AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0511720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511720 MtrunA17_Chr3g0118181 100.000 90 0 0 1 90 1 90 2.03e-63 186
Msa0511720 MtrunA17_Chr3g0122981 69.318 88 27 0 1 88 1 88 1.31e-43 136
Msa0511720 MtrunA17_Chr7g0219981 51.220 82 40 0 5 86 3 84 2.74e-29 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511720 AT3G48140.1 74.118 85 22 0 4 88 3 87 1.32e-44 139
Msa0511720 AT3G29970.1 51.220 82 40 0 5 86 3 84 8.38e-30 101
Msa0511720 AT3G29970.2 47.059 68 36 0 18 85 1 68 2.33e-20 77.4
Msa0511720 AT3G29970.3 47.059 68 36 0 18 85 1 68 2.33e-20 77.4

Find 60 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAGTTGCAATTTCTAATA+TGG 0.117516 3_4:-61344901 Msa0511720:three_prime_UTR
AGTATTATTGTCATGCATTT+AGG 0.207950 3_4:-61345181 Msa0511720:three_prime_UTR
TATAATTGAGATAAATTCTT+AGG 0.227251 3_4:-61344771 Msa0511720:three_prime_UTR
AAGTCGCAACTAAGTTATTT+TGG 0.233090 3_4:-61345261 Msa0511720:exon
AAGAATTTATCTCAATTATA+TGG 0.243677 3_4:+61344774 None:intergenic
CCGCATAGATGCAATGTTAT+TGG 0.285948 3_4:+61346658 None:intergenic
CCACAGCATGCATGCTGTTC+AGG 0.293719 3_4:+61345132 None:intergenic
AAACATCAGTACCTGACTTC+AGG 0.347160 3_4:+61346277 None:intergenic
TGAGTTGCAATTTCTAATAT+GGG 0.347749 3_4:-61344900 Msa0511720:three_prime_UTR
AAAGTTACTTCTAGGGAAAC+TGG 0.375628 3_4:-61344996 Msa0511720:three_prime_UTR
CAACAATTAACGCAACAATC+AGG 0.386272 3_4:+61345093 None:intergenic
CTCTTCAACCTTGATGATCT+AGG 0.393617 3_4:+61345031 None:intergenic
TACCCTCTGTTTGCTGCGGT+TGG 0.396092 3_4:-61346352 Msa0511720:CDS
AGTTTATTTATTCTTACAAA+TGG 0.404953 3_4:+61346616 None:intergenic
CTGCGGTTGGAGCTGCTGTT+GGG 0.406881 3_4:-61346339 Msa0511720:CDS
GCTGCGGTTGGAGCTGCTGT+TGG 0.426937 3_4:-61346340 Msa0511720:CDS
TATAAATTTGTTCGGTGTGC+CGG 0.440486 3_4:-61345061 Msa0511720:three_prime_UTR
TTGAGGCCGGGCATAATCTC+TGG 0.440854 3_4:+61345302 None:intergenic
GCAGACATGCTTGTTAAAAC+TGG 0.453798 3_4:-61344937 Msa0511720:three_prime_UTR
AACATCAGTACCTGACTTCA+GGG 0.462667 3_4:+61346278 None:intergenic
AACAAGCAGTCTCGAGCTGC+AGG 0.464020 3_4:-61345398 Msa0511720:CDS
AGTGAAGAAGCTGTTGAGGC+CGG 0.469984 3_4:+61345289 None:intergenic
TCTTCTTCAACTGCTATCCA+TGG 0.475644 3_4:-61346489 Msa0511720:exon
ATAAATTTGTGATGTTGTCT+AGG 0.477019 3_4:-61344965 Msa0511720:three_prime_UTR
GATGCAATGTTATTGGTCAT+TGG 0.477084 3_4:+61346665 None:intergenic
TTTCAACAAAGTTACTTCTA+GGG 0.478418 3_4:-61345003 Msa0511720:three_prime_UTR
AACTTGCTTACTTGTCCGTA+TGG 0.481659 3_4:+61346696 None:intergenic
GTCTCGAGCTGCAGGAGTGT+TGG 0.483795 3_4:-61345390 Msa0511720:CDS
GATTGCAATTTGCAATGGAA+TGG 0.501934 3_4:+61346548 None:intergenic
GATAAATTCTTAGGATTGCA+CGG 0.505322 3_4:-61344762 Msa0511720:three_prime_UTR
TCAGATTACAAAGCAACTGC+AGG 0.511045 3_4:+61344834 None:intergenic
AATTTGCAATGGAATGGAAA+TGG 0.511319 3_4:+61346554 None:intergenic
GGGTCTGATCCAGCGATTGG+TGG 0.513757 3_4:+61346466 None:intergenic
AAATAACTTAGTTGCGACTT+GGG 0.516597 3_4:+61345264 None:intergenic
TTCTGTGTACTTCTCTCCCT+CGG 0.519035 3_4:+61345358 None:intergenic
CTCGGGTCTGATCCAGCGAT+TGG 0.519677 3_4:+61346463 None:intergenic
GTGAAGAAGCTGTTGAGGCC+GGG 0.521542 3_4:+61345290 None:intergenic
TATCCATGGCCACCAATCGC+TGG 0.522115 3_4:-61346475 Msa0511720:exon
TCTGCATCAACCCTGAAGTC+AGG 0.524860 3_4:-61346288 Msa0511720:intron
AAAATAACTTAGTTGCGACT+TGG 0.526355 3_4:+61345263 None:intergenic
TCTCTGAGAGAGAAAGAGAA+TGG 0.528506 3_4:+61346577 None:intergenic
AAGATGATTGCAATTTGCAA+TGG 0.529414 3_4:+61346543 None:intergenic
TTTATCTCAATTATATGGAA+AGG 0.534034 3_4:+61344779 None:intergenic
GATGTTACGAACAAGTGAAA+AGG 0.535731 3_4:+61346309 None:intergenic
AGATCACCAGAGATTATGCC+CGG 0.537901 3_4:-61345308 Msa0511720:CDS
TGATGATCTAGGTTCGATAC+CGG 0.576141 3_4:+61345042 None:intergenic
CCTGAACAGCATGCATGCTG+TGG 0.577143 3_4:-61345132 Msa0511720:three_prime_UTR
AACAATTAACGCAACAATCA+GGG 0.580922 3_4:+61345094 None:intergenic
GATCCAGCGATTGGTGGCCA+TGG 0.584846 3_4:+61346472 None:intergenic
CGCGGGTATCACTATCCATA+CGG 0.587673 3_4:-61346711 Msa0511720:five_prime_UTR
CTCCAACCGCAGCAAACAGA+GGG 0.612181 3_4:+61346350 None:intergenic
GTGTTGGAGAACTTTGCCGA+GGG 0.614956 3_4:-61345374 Msa0511720:CDS
GGTATACCCTCTGTTTGCTG+CGG 0.632424 3_4:-61346356 Msa0511720:CDS
AGTGTTGGAGAACTTTGCCG+AGG 0.642190 3_4:-61345375 Msa0511720:CDS
GGTCAGTGAAGAAGCTGTTG+AGG 0.648101 3_4:+61345285 None:intergenic
GCTCCAACCGCAGCAAACAG+AGG 0.651727 3_4:+61346349 None:intergenic
GTATCGAACCTAGATCATCA+AGG 0.676860 3_4:-61345039 Msa0511720:three_prime_UTR
CCAATAACATTGCATCTATG+CGG 0.692843 3_4:-61346658 Msa0511720:five_prime_UTR
CAATCGCTGGATCAGACCCG+AGG 0.698764 3_4:-61346462 Msa0511720:intron
AGTACACAGAACATTTGCTG+AGG 0.706764 3_4:-61345346 Msa0511720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATATTAACAAAATTTAA+TGG - chr3_4:61345439-61345458 Msa0511720:intron 10.0%
!! AGATATTAACAAAATTTAAT+GGG - chr3_4:61345440-61345459 Msa0511720:intron 10.0%
!! TAGATATTAACAAAATTTAA+TGG - chr3_4:61345439-61345458 Msa0511720:intron 10.0%
!! AGATATTAACAAAATTTAAT+GGG - chr3_4:61345440-61345459 Msa0511720:intron 10.0%
!! AGTTTATTTATTCTTACAAA+TGG + chr3_4:61344863-61344882 None:intergenic 15.0%
!!! GAATATTCCTTTTTTATTTT+TGG - chr3_4:61345360-61345379 Msa0511720:CDS 15.0%
!! TTAATCTCTAATATCAAATA+GGG + chr3_4:61345683-61345702 None:intergenic 15.0%
!! ATTAATCTCTAATATCAAAT+AGG + chr3_4:61345684-61345703 None:intergenic 15.0%
!!! AGAGATTAATTTTTATTCAT+TGG - chr3_4:61345694-61345713 Msa0511720:intron 15.0%
!!! TGTAGTTTTATAAATTTGTT+CGG - chr3_4:61346407-61346426 Msa0511720:intron 15.0%
!! AAGAATTTATCTCAATTATA+TGG + chr3_4:61346705-61346724 None:intergenic 15.0%
!! TATAATTGAGATAAATTCTT+AGG - chr3_4:61346705-61346724 Msa0511720:five_prime_UTR 15.0%
!! AGTTTATTTATTCTTACAAA+TGG + chr3_4:61344863-61344882 None:intergenic 15.0%
!!! GAATATTCCTTTTTTATTTT+TGG - chr3_4:61345360-61345379 Msa0511720:CDS 15.0%
!! TTAATCTCTAATATCAAATA+GGG + chr3_4:61345683-61345702 None:intergenic 15.0%
!! ATTAATCTCTAATATCAAAT+AGG + chr3_4:61345684-61345703 None:intergenic 15.0%
!!! AGAGATTAATTTTTATTCAT+TGG - chr3_4:61345694-61345713 Msa0511720:intron 15.0%
!!! TGTAGTTTTATAAATTTGTT+CGG - chr3_4:61346407-61346426 Msa0511720:intron 15.0%
!! AAGAATTTATCTCAATTATA+TGG + chr3_4:61346705-61346724 None:intergenic 15.0%
!! TATAATTGAGATAAATTCTT+AGG - chr3_4:61346705-61346724 Msa0511720:five_prime_UTR 15.0%
!! AAGAAGATAACAAAAACAAA+GGG + chr3_4:61344962-61344981 None:intergenic 20.0%
!! TATACCTATAACAAAAAAGA+TGG + chr3_4:61345106-61345125 None:intergenic 20.0%
!! CTAATCGGATAATTAATTAA+TGG + chr3_4:61345329-61345348 None:intergenic 20.0%
!! AGGAAAACCAAAAATAAAAA+AGG + chr3_4:61345370-61345389 None:intergenic 20.0%
!! ACAAATTGTGAAAATTTAAG+CGG + chr3_4:61345416-61345435 None:intergenic 20.0%
!! GATACATGAGTTATTTAATT+TGG + chr3_4:61345514-61345533 None:intergenic 20.0%
!! AATTAAATAACTCATGTATC+TGG - chr3_4:61345514-61345533 Msa0511720:intron 20.0%
!!! TGATTAACTAAGTGATTTTT+AGG - chr3_4:61345549-61345568 Msa0511720:intron 20.0%
!!! GATTAATTTTTATTCATTGG+AGG - chr3_4:61345697-61345716 Msa0511720:intron 20.0%
!!! TTATTTTGGATTAATAACAG+TGG - chr3_4:61346229-61346248 Msa0511720:intron 20.0%
!! TTTATCTCAATTATATGGAA+AGG + chr3_4:61346700-61346719 None:intergenic 20.0%
!! AAGAAGATAACAAAAACAAA+GGG + chr3_4:61344962-61344981 None:intergenic 20.0%
!! TATACCTATAACAAAAAAGA+TGG + chr3_4:61345106-61345125 None:intergenic 20.0%
!! CTAATCGGATAATTAATTAA+TGG + chr3_4:61345329-61345348 None:intergenic 20.0%
!! AGGAAAACCAAAAATAAAAA+AGG + chr3_4:61345370-61345389 None:intergenic 20.0%
!! ACAAATTGTGAAAATTTAAG+CGG + chr3_4:61345416-61345435 None:intergenic 20.0%
!! GATACATGAGTTATTTAATT+TGG + chr3_4:61345514-61345533 None:intergenic 20.0%
!! AATTAAATAACTCATGTATC+TGG - chr3_4:61345514-61345533 Msa0511720:intron 20.0%
!!! TGATTAACTAAGTGATTTTT+AGG - chr3_4:61345549-61345568 Msa0511720:intron 20.0%
!!! GATTAATTTTTATTCATTGG+AGG - chr3_4:61345697-61345716 Msa0511720:intron 20.0%
!!! TTATTTTGGATTAATAACAG+TGG - chr3_4:61346229-61346248 Msa0511720:intron 20.0%
!! TTTATCTCAATTATATGGAA+AGG + chr3_4:61346700-61346719 None:intergenic 20.0%
! AGAAGATAACAAAAACAAAG+GGG + chr3_4:61344961-61344980 None:intergenic 25.0%
! GAAGAAGATAACAAAAACAA+AGG + chr3_4:61344963-61344982 None:intergenic 25.0%
!!! TTCACCATCTTTTTTGTTAT+AGG - chr3_4:61345099-61345118 Msa0511720:three_prime_UTR 25.0%
!!! TGATTGATTTTTCTCTTCTT+TGG - chr3_4:61345252-61345271 Msa0511720:exon 25.0%
! ATTCCATCATGTTTACTAAT+CGG + chr3_4:61345344-61345363 None:intergenic 25.0%
! TTTGCTCAAATAACGTTTAA+TGG - chr3_4:61345636-61345655 Msa0511720:intron 25.0%
!!! AATGGTGATTTTAAAGTTGT+TGG - chr3_4:61345654-61345673 Msa0511720:intron 25.0%
! TGAGATATAACTTAAAAGAG+TGG - chr3_4:61345773-61345792 Msa0511720:intron 25.0%
!! AATGAAAACTTTTATCTCAC+AGG - chr3_4:61345963-61345982 Msa0511720:intron 25.0%
!! ATGAAAACTTTTATCTCACA+GGG - chr3_4:61345964-61345983 Msa0511720:intron 25.0%
!!! TTGTTGTTTAATTTTTAGCC+AGG - chr3_4:61345996-61346015 Msa0511720:intron 25.0%
!!! TTTAATTTTTAGCCAGGATT+TGG - chr3_4:61346002-61346021 Msa0511720:intron 25.0%
!! ATGTATGTTTGTTCTTTTGA+TGG - chr3_4:61346045-61346064 Msa0511720:intron 25.0%
!! TGTATGTTTGTTCTTTTGAT+GGG - chr3_4:61346046-61346065 Msa0511720:intron 25.0%
! AGTATTATTGTCATGCATTT+AGG - chr3_4:61346295-61346314 Msa0511720:CDS 25.0%
!! TTTTCAACAAAGTTACTTCT+AGG - chr3_4:61346472-61346491 Msa0511720:CDS 25.0%
! TTTCAACAAAGTTACTTCTA+GGG - chr3_4:61346473-61346492 Msa0511720:CDS 25.0%
! ATAAATTTGTGATGTTGTCT+AGG - chr3_4:61346511-61346530 Msa0511720:five_prime_UTR 25.0%
! TGAGTTGCAATTTCTAATAT+GGG - chr3_4:61346576-61346595 Msa0511720:five_prime_UTR 25.0%
! AGAAGATAACAAAAACAAAG+GGG + chr3_4:61344961-61344980 None:intergenic 25.0%
! GAAGAAGATAACAAAAACAA+AGG + chr3_4:61344963-61344982 None:intergenic 25.0%
!!! TTCACCATCTTTTTTGTTAT+AGG - chr3_4:61345099-61345118 Msa0511720:three_prime_UTR 25.0%
!!! TGATTGATTTTTCTCTTCTT+TGG - chr3_4:61345252-61345271 Msa0511720:exon 25.0%
! ATTCCATCATGTTTACTAAT+CGG + chr3_4:61345344-61345363 None:intergenic 25.0%
! TTTGCTCAAATAACGTTTAA+TGG - chr3_4:61345636-61345655 Msa0511720:intron 25.0%
!!! AATGGTGATTTTAAAGTTGT+TGG - chr3_4:61345654-61345673 Msa0511720:intron 25.0%
! TGAGATATAACTTAAAAGAG+TGG - chr3_4:61345773-61345792 Msa0511720:intron 25.0%
!! AATGAAAACTTTTATCTCAC+AGG - chr3_4:61345963-61345982 Msa0511720:intron 25.0%
!! ATGAAAACTTTTATCTCACA+GGG - chr3_4:61345964-61345983 Msa0511720:intron 25.0%
!!! TTGTTGTTTAATTTTTAGCC+AGG - chr3_4:61345996-61346015 Msa0511720:intron 25.0%
!!! TTTAATTTTTAGCCAGGATT+TGG - chr3_4:61346002-61346021 Msa0511720:intron 25.0%
!! ATGTATGTTTGTTCTTTTGA+TGG - chr3_4:61346045-61346064 Msa0511720:intron 25.0%
!! TGTATGTTTGTTCTTTTGAT+GGG - chr3_4:61346046-61346065 Msa0511720:intron 25.0%
! AGTATTATTGTCATGCATTT+AGG - chr3_4:61346295-61346314 Msa0511720:CDS 25.0%
!! TTTTCAACAAAGTTACTTCT+AGG - chr3_4:61346472-61346491 Msa0511720:CDS 25.0%
! TTTCAACAAAGTTACTTCTA+GGG - chr3_4:61346473-61346492 Msa0511720:CDS 25.0%
! ATAAATTTGTGATGTTGTCT+AGG - chr3_4:61346511-61346530 Msa0511720:five_prime_UTR 25.0%
! TGAGTTGCAATTTCTAATAT+GGG - chr3_4:61346576-61346595 Msa0511720:five_prime_UTR 25.0%
AATTTGCAATGGAATGGAAA+TGG + chr3_4:61344925-61344944 None:intergenic 30.0%
AAGATGATTGCAATTTGCAA+TGG + chr3_4:61344936-61344955 None:intergenic 30.0%
ACGAAATGCAAAGTAGTAAA+TGG + chr3_4:61345065-61345084 None:intergenic 30.0%
TATCCGATTAGTAAACATGA+TGG - chr3_4:61345338-61345357 Msa0511720:CDS 30.0%
CATCATATCATTTCTCAGAT+AGG + chr3_4:61345390-61345409 None:intergenic 30.0%
!!! TTTGTTCTTTTGATGGGTTT+AGG - chr3_4:61346052-61346071 Msa0511720:intron 30.0%
!!! TTGTTCTTTTGATGGGTTTA+GGG - chr3_4:61346053-61346072 Msa0511720:intron 30.0%
AAATAACTTAGTTGCGACTT+GGG + chr3_4:61346215-61346234 None:intergenic 30.0%
AAAATAACTTAGTTGCGACT+TGG + chr3_4:61346216-61346235 None:intergenic 30.0%
! AAGTCGCAACTAAGTTATTT+TGG - chr3_4:61346215-61346234 Msa0511720:intron 30.0%
AACAATTAACGCAACAATCA+GGG + chr3_4:61346385-61346404 None:intergenic 30.0%
CTGAGTTGCAATTTCTAATA+TGG - chr3_4:61346575-61346594 Msa0511720:five_prime_UTR 30.0%
!! TGTATTCTTTTGAGTACTCA+CGG + chr3_4:61346619-61346638 None:intergenic 30.0%
GATAAATTCTTAGGATTGCA+CGG - chr3_4:61346714-61346733 Msa0511720:five_prime_UTR 30.0%
AATTTGCAATGGAATGGAAA+TGG + chr3_4:61344925-61344944 None:intergenic 30.0%
AAGATGATTGCAATTTGCAA+TGG + chr3_4:61344936-61344955 None:intergenic 30.0%
ACGAAATGCAAAGTAGTAAA+TGG + chr3_4:61345065-61345084 None:intergenic 30.0%
TATCCGATTAGTAAACATGA+TGG - chr3_4:61345338-61345357 Msa0511720:CDS 30.0%
CATCATATCATTTCTCAGAT+AGG + chr3_4:61345390-61345409 None:intergenic 30.0%
!!! TTTGTTCTTTTGATGGGTTT+AGG - chr3_4:61346052-61346071 Msa0511720:intron 30.0%
!!! TTGTTCTTTTGATGGGTTTA+GGG - chr3_4:61346053-61346072 Msa0511720:intron 30.0%
AAATAACTTAGTTGCGACTT+GGG + chr3_4:61346215-61346234 None:intergenic 30.0%
AAAATAACTTAGTTGCGACT+TGG + chr3_4:61346216-61346235 None:intergenic 30.0%
! AAGTCGCAACTAAGTTATTT+TGG - chr3_4:61346215-61346234 Msa0511720:intron 30.0%
AACAATTAACGCAACAATCA+GGG + chr3_4:61346385-61346404 None:intergenic 30.0%
CTGAGTTGCAATTTCTAATA+TGG - chr3_4:61346575-61346594 Msa0511720:five_prime_UTR 30.0%
!! TGTATTCTTTTGAGTACTCA+CGG + chr3_4:61346619-61346638 None:intergenic 30.0%
GATAAATTCTTAGGATTGCA+CGG - chr3_4:61346714-61346733 Msa0511720:five_prime_UTR 30.0%
GATGCAATGTTATTGGTCAT+TGG + chr3_4:61344814-61344833 None:intergenic 35.0%
CCAATAACATTGCATCTATG+CGG - chr3_4:61344818-61344837 Msa0511720:three_prime_UTR 35.0%
GATTGCAATTTGCAATGGAA+TGG + chr3_4:61344931-61344950 None:intergenic 35.0%
TGGCAAAATACAGATCGAAA+AGG + chr3_4:61345045-61345064 None:intergenic 35.0%
TTGCATTTCGTAAGAGAGTT+AGG - chr3_4:61345074-61345093 Msa0511720:three_prime_UTR 35.0%
TGCATTTCGTAAGAGAGTTA+GGG - chr3_4:61345075-61345094 Msa0511720:three_prime_UTR 35.0%
GATGTTACGAACAAGTGAAA+AGG + chr3_4:61345170-61345189 None:intergenic 35.0%
! GAGTTTGACTTATCTCAGAT+CGG - chr3_4:61345274-61345293 Msa0511720:CDS 35.0%
ACTCATGTATCTGGACTAAA+TGG - chr3_4:61345523-61345542 Msa0511720:intron 35.0%
GACAAATCAGCTTCAATCAT+CGG + chr3_4:61345598-61345617 None:intergenic 35.0%
AACTTAAAAGAGTGGCATCA+TGG - chr3_4:61345781-61345800 Msa0511720:intron 35.0%
AAATCCATGATATGTTTGCC+TGG - chr3_4:61345861-61345880 Msa0511720:intron 35.0%
CAACAATTAACGCAACAATC+AGG + chr3_4:61346386-61346405 None:intergenic 35.0%
!! TATAAATTTGTTCGGTGTGC+CGG - chr3_4:61346415-61346434 Msa0511720:intron 35.0%
! AAAGTTACTTCTAGGGAAAC+TGG - chr3_4:61346480-61346499 Msa0511720:exon 35.0%
!! GTATTCTTTTGAGTACTCAC+GGG + chr3_4:61346618-61346637 None:intergenic 35.0%
GATGCAATGTTATTGGTCAT+TGG + chr3_4:61344814-61344833 None:intergenic 35.0%
CCAATAACATTGCATCTATG+CGG - chr3_4:61344818-61344837 Msa0511720:three_prime_UTR 35.0%
GATTGCAATTTGCAATGGAA+TGG + chr3_4:61344931-61344950 None:intergenic 35.0%
TGGCAAAATACAGATCGAAA+AGG + chr3_4:61345045-61345064 None:intergenic 35.0%
TTGCATTTCGTAAGAGAGTT+AGG - chr3_4:61345074-61345093 Msa0511720:three_prime_UTR 35.0%
TGCATTTCGTAAGAGAGTTA+GGG - chr3_4:61345075-61345094 Msa0511720:three_prime_UTR 35.0%
GATGTTACGAACAAGTGAAA+AGG + chr3_4:61345170-61345189 None:intergenic 35.0%
! GAGTTTGACTTATCTCAGAT+CGG - chr3_4:61345274-61345293 Msa0511720:CDS 35.0%
ACTCATGTATCTGGACTAAA+TGG - chr3_4:61345523-61345542 Msa0511720:intron 35.0%
GACAAATCAGCTTCAATCAT+CGG + chr3_4:61345598-61345617 None:intergenic 35.0%
AACTTAAAAGAGTGGCATCA+TGG - chr3_4:61345781-61345800 Msa0511720:intron 35.0%
AAATCCATGATATGTTTGCC+TGG - chr3_4:61345861-61345880 Msa0511720:intron 35.0%
CAACAATTAACGCAACAATC+AGG + chr3_4:61346386-61346405 None:intergenic 35.0%
!! TATAAATTTGTTCGGTGTGC+CGG - chr3_4:61346415-61346434 Msa0511720:intron 35.0%
! AAAGTTACTTCTAGGGAAAC+TGG - chr3_4:61346480-61346499 Msa0511720:exon 35.0%
!! GTATTCTTTTGAGTACTCAC+GGG + chr3_4:61346618-61346637 None:intergenic 35.0%
! AACTTGCTTACTTGTCCGTA+TGG + chr3_4:61344783-61344802 None:intergenic 40.0%
CCGCATAGATGCAATGTTAT+TGG + chr3_4:61344821-61344840 None:intergenic 40.0%
! TCTCTGAGAGAGAAAGAGAA+TGG + chr3_4:61344902-61344921 None:intergenic 40.0%
TCTTCTTCAACTGCTATCCA+TGG - chr3_4:61344987-61345006 Msa0511720:three_prime_UTR 40.0%
AACATCAGTACCTGACTTCA+GGG + chr3_4:61345201-61345220 None:intergenic 40.0%
AAACATCAGTACCTGACTTC+AGG + chr3_4:61345202-61345221 None:intergenic 40.0%
AAGTCGCTTATAGAGAGAGT+AGG + chr3_4:61345482-61345501 None:intergenic 40.0%
TCAACCAGGCAAACATATCA+TGG + chr3_4:61345868-61345887 None:intergenic 40.0%
CTGGTTGAGTGAAATGAAGT+CGG - chr3_4:61345880-61345899 Msa0511720:intron 40.0%
TGGTGTTTGAAGGAGGATAA+TGG - chr3_4:61346022-61346041 Msa0511720:intron 40.0%
! AGTACACAGAACATTTGCTG+AGG - chr3_4:61346130-61346149 Msa0511720:intron 40.0%
TGATGATCTAGGTTCGATAC+CGG + chr3_4:61346437-61346456 None:intergenic 40.0%
GTATCGAACCTAGATCATCA+AGG - chr3_4:61346437-61346456 Msa0511720:intron 40.0%
! CTCTTCAACCTTGATGATCT+AGG + chr3_4:61346448-61346467 None:intergenic 40.0%
! GCAGACATGCTTGTTAAAAC+TGG - chr3_4:61346539-61346558 Msa0511720:five_prime_UTR 40.0%
TCAGATTACAAAGCAACTGC+AGG + chr3_4:61346645-61346664 None:intergenic 40.0%
! AACTTGCTTACTTGTCCGTA+TGG + chr3_4:61344783-61344802 None:intergenic 40.0%
CCGCATAGATGCAATGTTAT+TGG + chr3_4:61344821-61344840 None:intergenic 40.0%
! TCTCTGAGAGAGAAAGAGAA+TGG + chr3_4:61344902-61344921 None:intergenic 40.0%
TCTTCTTCAACTGCTATCCA+TGG - chr3_4:61344987-61345006 Msa0511720:three_prime_UTR 40.0%
AACATCAGTACCTGACTTCA+GGG + chr3_4:61345201-61345220 None:intergenic 40.0%
AAACATCAGTACCTGACTTC+AGG + chr3_4:61345202-61345221 None:intergenic 40.0%
AAGTCGCTTATAGAGAGAGT+AGG + chr3_4:61345482-61345501 None:intergenic 40.0%
TCAACCAGGCAAACATATCA+TGG + chr3_4:61345868-61345887 None:intergenic 40.0%
CTGGTTGAGTGAAATGAAGT+CGG - chr3_4:61345880-61345899 Msa0511720:intron 40.0%
TGGTGTTTGAAGGAGGATAA+TGG - chr3_4:61346022-61346041 Msa0511720:intron 40.0%
! AGTACACAGAACATTTGCTG+AGG - chr3_4:61346130-61346149 Msa0511720:intron 40.0%
TGATGATCTAGGTTCGATAC+CGG + chr3_4:61346437-61346456 None:intergenic 40.0%
GTATCGAACCTAGATCATCA+AGG - chr3_4:61346437-61346456 Msa0511720:intron 40.0%
! CTCTTCAACCTTGATGATCT+AGG + chr3_4:61346448-61346467 None:intergenic 40.0%
! GCAGACATGCTTGTTAAAAC+TGG - chr3_4:61346539-61346558 Msa0511720:five_prime_UTR 40.0%
TCAGATTACAAAGCAACTGC+AGG + chr3_4:61346645-61346664 None:intergenic 40.0%
AGATCGAAAAGGACTCACCT+CGG + chr3_4:61345034-61345053 None:intergenic 45.0%
CGACTTCATTTCACTCAACC+AGG + chr3_4:61345882-61345901 None:intergenic 45.0%
!! AGCCAGGATTTGGTGTTTGA+AGG - chr3_4:61346012-61346031 Msa0511720:intron 45.0%
CTCCTTCAAACACCAAATCC+TGG + chr3_4:61346017-61346036 None:intergenic 45.0%
!! CAGGATTTGGTGTTTGAAGG+AGG - chr3_4:61346015-61346034 Msa0511720:intron 45.0%
TTCTGTGTACTTCTCTCCCT+CGG + chr3_4:61346121-61346140 None:intergenic 45.0%
AGATCACCAGAGATTATGCC+CGG - chr3_4:61346168-61346187 Msa0511720:intron 45.0%
!! TTCTTTTGAGTACTCACGGG+TGG + chr3_4:61346615-61346634 None:intergenic 45.0%
AGATCGAAAAGGACTCACCT+CGG + chr3_4:61345034-61345053 None:intergenic 45.0%
CGACTTCATTTCACTCAACC+AGG + chr3_4:61345882-61345901 None:intergenic 45.0%
!! AGCCAGGATTTGGTGTTTGA+AGG - chr3_4:61346012-61346031 Msa0511720:intron 45.0%
CTCCTTCAAACACCAAATCC+TGG + chr3_4:61346017-61346036 None:intergenic 45.0%
!! CAGGATTTGGTGTTTGAAGG+AGG - chr3_4:61346015-61346034 Msa0511720:intron 45.0%
TTCTGTGTACTTCTCTCCCT+CGG + chr3_4:61346121-61346140 None:intergenic 45.0%
AGATCACCAGAGATTATGCC+CGG - chr3_4:61346168-61346187 Msa0511720:intron 45.0%
!! TTCTTTTGAGTACTCACGGG+TGG + chr3_4:61346615-61346634 None:intergenic 45.0%
CGCGGGTATCACTATCCATA+CGG - chr3_4:61344765-61344784 Msa0511720:three_prime_UTR 50.0%
GATCGAAAAGGACTCACCTC+GGG + chr3_4:61345033-61345052 None:intergenic 50.0%
! GGTATACCCTCTGTTTGCTG+CGG - chr3_4:61345120-61345139 Msa0511720:three_prime_UTR 50.0%
TCTGCATCAACCCTGAAGTC+AGG - chr3_4:61345188-61345207 Msa0511720:three_prime_UTR 50.0%
! AGTGTTGGAGAACTTTGCCG+AGG - chr3_4:61346101-61346120 Msa0511720:intron 50.0%
GTGTTGGAGAACTTTGCCGA+GGG - chr3_4:61346102-61346121 Msa0511720:intron 50.0%
AGTGAAGAAGCTGTTGAGGC+CGG + chr3_4:61346190-61346209 None:intergenic 50.0%
GGTCAGTGAAGAAGCTGTTG+AGG + chr3_4:61346194-61346213 None:intergenic 50.0%
CGCGGGTATCACTATCCATA+CGG - chr3_4:61344765-61344784 Msa0511720:three_prime_UTR 50.0%
GATCGAAAAGGACTCACCTC+GGG + chr3_4:61345033-61345052 None:intergenic 50.0%
! GGTATACCCTCTGTTTGCTG+CGG - chr3_4:61345120-61345139 Msa0511720:three_prime_UTR 50.0%
TCTGCATCAACCCTGAAGTC+AGG - chr3_4:61345188-61345207 Msa0511720:three_prime_UTR 50.0%
! AGTGTTGGAGAACTTTGCCG+AGG - chr3_4:61346101-61346120 Msa0511720:intron 50.0%
GTGTTGGAGAACTTTGCCGA+GGG - chr3_4:61346102-61346121 Msa0511720:intron 50.0%
AGTGAAGAAGCTGTTGAGGC+CGG + chr3_4:61346190-61346209 None:intergenic 50.0%
GGTCAGTGAAGAAGCTGTTG+AGG + chr3_4:61346194-61346213 None:intergenic 50.0%
TATCCATGGCCACCAATCGC+TGG - chr3_4:61345001-61345020 Msa0511720:three_prime_UTR 55.0%
! TACCCTCTGTTTGCTGCGGT+TGG - chr3_4:61345124-61345143 Msa0511720:three_prime_UTR 55.0%
CTCCAACCGCAGCAAACAGA+GGG + chr3_4:61345129-61345148 None:intergenic 55.0%
AACAAGCAGTCTCGAGCTGC+AGG - chr3_4:61346078-61346097 Msa0511720:intron 55.0%
TTGAGGCCGGGCATAATCTC+TGG + chr3_4:61346177-61346196 None:intergenic 55.0%
GTGAAGAAGCTGTTGAGGCC+GGG + chr3_4:61346189-61346208 None:intergenic 55.0%
CCACAGCATGCATGCTGTTC+AGG + chr3_4:61346347-61346366 None:intergenic 55.0%
CCTGAACAGCATGCATGCTG+TGG - chr3_4:61346344-61346363 Msa0511720:CDS 55.0%
TATCCATGGCCACCAATCGC+TGG - chr3_4:61345001-61345020 Msa0511720:three_prime_UTR 55.0%
! TACCCTCTGTTTGCTGCGGT+TGG - chr3_4:61345124-61345143 Msa0511720:three_prime_UTR 55.0%
CTCCAACCGCAGCAAACAGA+GGG + chr3_4:61345129-61345148 None:intergenic 55.0%
AACAAGCAGTCTCGAGCTGC+AGG - chr3_4:61346078-61346097 Msa0511720:intron 55.0%
TTGAGGCCGGGCATAATCTC+TGG + chr3_4:61346177-61346196 None:intergenic 55.0%
GTGAAGAAGCTGTTGAGGCC+GGG + chr3_4:61346189-61346208 None:intergenic 55.0%
CCACAGCATGCATGCTGTTC+AGG + chr3_4:61346347-61346366 None:intergenic 55.0%
CCTGAACAGCATGCATGCTG+TGG - chr3_4:61346344-61346363 Msa0511720:CDS 55.0%
! GATCCAGCGATTGGTGGCCA+TGG + chr3_4:61345007-61345026 None:intergenic 60.0%
GGGTCTGATCCAGCGATTGG+TGG + chr3_4:61345013-61345032 None:intergenic 60.0%
CTCGGGTCTGATCCAGCGAT+TGG + chr3_4:61345016-61345035 None:intergenic 60.0%
CAATCGCTGGATCAGACCCG+AGG - chr3_4:61345014-61345033 Msa0511720:three_prime_UTR 60.0%
GCTCCAACCGCAGCAAACAG+AGG + chr3_4:61345130-61345149 None:intergenic 60.0%
CTGCGGTTGGAGCTGCTGTT+GGG - chr3_4:61345137-61345156 Msa0511720:three_prime_UTR 60.0%
! GTCTCGAGCTGCAGGAGTGT+TGG - chr3_4:61346086-61346105 Msa0511720:intron 60.0%
! GATCCAGCGATTGGTGGCCA+TGG + chr3_4:61345007-61345026 None:intergenic 60.0%
GGGTCTGATCCAGCGATTGG+TGG + chr3_4:61345013-61345032 None:intergenic 60.0%
CTCGGGTCTGATCCAGCGAT+TGG + chr3_4:61345016-61345035 None:intergenic 60.0%
CAATCGCTGGATCAGACCCG+AGG - chr3_4:61345014-61345033 Msa0511720:three_prime_UTR 60.0%
GCTCCAACCGCAGCAAACAG+AGG + chr3_4:61345130-61345149 None:intergenic 60.0%
CTGCGGTTGGAGCTGCTGTT+GGG - chr3_4:61345137-61345156 Msa0511720:three_prime_UTR 60.0%
! GTCTCGAGCTGCAGGAGTGT+TGG - chr3_4:61346086-61346105 Msa0511720:intron 60.0%
GCTGCGGTTGGAGCTGCTGT+TGG - chr3_4:61345136-61345155 Msa0511720:three_prime_UTR 65.0%
GCTGCGGTTGGAGCTGCTGT+TGG - chr3_4:61345136-61345155 Msa0511720:three_prime_UTR 65.0%
TACCCGCGTCACTCAGCCCG+AGG + chr3_4:61344753-61344772 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 61344752 61346746 61344752 ID=Msa0511720;Name=Msa0511720
chr3_4 mRNA 61344752 61346746 61344752 ID=Msa0511720-mRNA-1;Parent=Msa0511720;Name=Msa0511720-mRNA-1;_AED=0.01;_eAED=0.01;_QI=254|1|1|1|1|1|3|519|90
chr3_4 exon 61344752 61345424 61344752 ID=Msa0511720-mRNA-1:exon:14942;Parent=Msa0511720-mRNA-1
chr3_4 exon 61346289 61346377 61346289 ID=Msa0511720-mRNA-1:exon:14941;Parent=Msa0511720-mRNA-1
chr3_4 exon 61346463 61346746 61346463 ID=Msa0511720-mRNA-1:exon:14940;Parent=Msa0511720-mRNA-1
chr3_4 five_prime_UTR 61346493 61346746 61346493 ID=Msa0511720-mRNA-1:five_prime_utr;Parent=Msa0511720-mRNA-1
chr3_4 CDS 61346463 61346492 61346463 ID=Msa0511720-mRNA-1:cds;Parent=Msa0511720-mRNA-1
chr3_4 CDS 61346289 61346377 61346289 ID=Msa0511720-mRNA-1:cds;Parent=Msa0511720-mRNA-1
chr3_4 CDS 61345271 61345424 61345271 ID=Msa0511720-mRNA-1:cds;Parent=Msa0511720-mRNA-1
chr3_4 three_prime_UTR 61344752 61345270 61344752 ID=Msa0511720-mRNA-1:three_prime_utr;Parent=Msa0511720-mRNA-1
Gene Sequence

>Msa0511720

ATGGCCACCAATCGCTGGATCAGACCCGAGGTATACCCTCTGTTTGCTGCGGTTGGAGCTGCTGTTGGGATCTGTGCCTTTTCACTTGTTCGTAACATCTGCATCAACCCTGAAGTCAGGGTGAACAAGCAGTCTCGAGCTGCAGGAGTGTTGGAGAACTTTGCCGAGGGAGAGAAGTACACAGAACATTTGCTGAGGAAGTTTTCACGCAACAGATCACCAGAGATTATGCCCGGCCTCAACAGCTTCTTCACTGACCCAAGTCGCAACTAA

Protein sequence

>Msa0511720

MATNRWIRPEVYPLFAAVGAAVGICAFSLVRNICINPEVRVNKQSRAAGVLENFAEGEKYTEHLLRKFSRNRSPEIMPGLNSFFTDPSRN*