AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0265210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0265210 MtrunA17_Chr2g0329741 94.583 240 9 1 1 240 1 236 3.79e-164 456
Msa0265210 MtrunA17_Chr2g0329741 79.167 48 10 0 241 288 105 152 1.11e-15 75.1
Msa0265210 MtrunA17_Chr4g0032231 32.663 199 116 4 37 226 55 244 1.22e-24 99.8
Msa0265210 MtrunA17_Chr1g0160481 27.160 162 109 2 53 211 36 191 5.43e-18 81.3
Msa0265210 MtrunA17_Chr3g0119081 27.160 162 109 2 53 211 40 195 8.62e-18 80.5
Msa0265210 MtrunA17_Chr1g0182521 30.702 114 65 1 129 242 485 584 5.65e-12 66.2
Msa0265210 MtrunA17_Chr3g0143411 29.661 118 82 1 86 203 243 359 7.18e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0265210 AT3G46870.1 34.091 176 104 3 52 224 72 238 2.90e-22 93.6
Msa0265210 AT5G09315.1 29.108 213 124 5 44 235 44 250 9.01e-20 87.0
Msa0265210 AT3G46870.2 31.915 188 104 4 52 224 72 250 5.57e-19 85.1
Msa0265210 AT4G39620.2 25.366 205 137 6 26 221 36 233 9.04e-14 71.6
Msa0265210 AT4G39620.1 25.366 205 137 6 26 221 36 233 1.16e-13 71.6
Msa0265210 AT1G62350.1 27.160 162 109 2 53 211 1 156 1.75e-13 68.2
Msa0265210 AT1G62350.2 27.160 162 109 2 53 211 57 212 3.41e-13 68.6
Msa0265210 AT3G18110.1 27.717 184 123 3 117 291 743 925 9.90e-12 65.9
Msa0265210 AT3G04760.1 29.054 148 98 2 86 230 189 332 7.05e-11 63.2
Msa0265210 AT2G15630.1 27.907 172 108 5 129 288 435 602 7.86e-11 63.2
Msa0265210 AT3G53170.2 27.805 205 128 6 18 218 49 237 8.36e-11 62.8
Msa0265210 AT3G53170.1 27.805 205 128 6 18 218 49 237 8.36e-11 62.8
Msa0265210 AT3G53170.3 27.805 205 128 6 18 218 49 237 8.77e-11 62.8

Find 72 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAACTTGAACGCTTTCTT+TGG 0.235310 2_2:+65437946 None:intergenic
ATGAAGGAAGATTGTGATTT+GGG 0.290404 2_2:+65438174 None:intergenic
ACTTTCTGAACAAATTTATC+AGG 0.290581 2_2:+65435818 None:intergenic
GCTTCTTCTGTTGTTGTTGT+TGG 0.303251 2_2:+65438036 None:intergenic
TACAGATCCATGAAGGCTTC+AGG 0.306225 2_2:-65435953 Msa0265210:CDS
TCATTGAACAACCTCGTATC+TGG 0.321501 2_2:+65436028 None:intergenic
TTCAATCGGGTGGTTGAAAC+TGG 0.331042 2_2:-65434785 Msa0265210:CDS
AATGAAGGAAGATTGTGATT+TGG 0.342371 2_2:+65438173 None:intergenic
CAAACACCCTGAAGCCTTCA+TGG 0.358156 2_2:+65435946 None:intergenic
TGACATTCACTATACTGATT+AGG 0.360015 2_2:-65435913 Msa0265210:CDS
TTGGTGGTGGTTGAATTTGA+GGG 0.360715 2_2:+65438055 None:intergenic
ATTAGGAATCTAATGAATAA+TGG 0.372286 2_2:-65435896 Msa0265210:CDS
TTCTGACACTATATTGTTGC+TGG 0.386533 2_2:-65436116 Msa0265210:CDS
TTCAATCAAGTTGTGGAAAA+GGG 0.393035 2_2:-65436058 Msa0265210:CDS
GAAGGCTTCAGGGTGTTTGC+CGG 0.397835 2_2:-65435942 Msa0265210:CDS
TCTTTGGAAATTACCATTGA+AGG 0.404903 2_2:+65437962 None:intergenic
GGTTGTTCAATGAGATGATC+GGG 0.409297 2_2:-65436018 Msa0265210:CDS
GCCAAGACAATTAAAACATC+AGG 0.410998 2_2:+65437845 None:intergenic
GTTCAATCAAGTTGTGGAAA+AGG 0.412536 2_2:-65436059 Msa0265210:CDS
AGGAAGCTGGGTATGATAAA+TGG 0.414897 2_2:-65436153 Msa0265210:CDS
GTTGGTGGTGGTTGAATTTG+AGG 0.433884 2_2:+65438054 None:intergenic
TCTTCTGTTGTTGTTGTTGG+TGG 0.444947 2_2:+65438039 None:intergenic
TTATTTGCAAGTTGGTAATA+CGG 0.445470 2_2:-65435993 Msa0265210:CDS
AAACAAGAAACCACCTTCAA+TGG 0.451723 2_2:-65437975 Msa0265210:CDS
TTCTCAAGTCTAAATTGCTT+AGG 0.453872 2_2:-65437877 Msa0265210:CDS
GCAATTTAGACTTGAGAACT+TGG 0.462867 2_2:+65437882 None:intergenic
ATTATCAGTGATGAGGAAGC+TGG 0.464498 2_2:-65436166 Msa0265210:CDS
TCTGTTGTTGTTGTTGGTGG+TGG 0.470519 2_2:+65438042 None:intergenic
GAAAACTCACATGTTTCAGC+TGG 0.472944 2_2:+65435795 None:intergenic
GTGGTGGTTGAATTTGAGGG+TGG 0.473830 2_2:+65438058 None:intergenic
ACAGATCCATGAAGGCTTCA+GGG 0.478380 2_2:-65435952 Msa0265210:CDS
TTCTGACATGATACTGTTGT+TGG 0.482914 2_2:-65434843 Msa0265210:CDS
AGCAGGATATGATACATTGC+TGG 0.484807 2_2:-65434876 Msa0265210:CDS
TGGCAGAAGAGATGTTCAAT+CGG 0.498409 2_2:-65434799 Msa0265210:CDS
ATCGGGGTTTATTTGCAAGT+TGG 0.501108 2_2:-65436001 Msa0265210:CDS
ATAGTGAATGTCAATGAATC+CGG 0.502047 2_2:+65435923 None:intergenic
GAATAATGGAGAACATGAAC+TGG 0.504471 2_2:-65435882 Msa0265210:CDS
TGGTGGTTGAATTTGAGGGT+GGG 0.523618 2_2:+65438059 None:intergenic
ATTATTAGTGATGAGGAAGC+AGG 0.523985 2_2:-65434893 Msa0265210:CDS
GTTTGAAATATCCATGCGCT+TGG 0.525505 2_2:+65438094 None:intergenic
CCTTGAGAGATAAATGGAGT+TGG 0.528634 2_2:+65437804 None:intergenic
TCTGACATGATACTGTTGTT+GGG 0.538800 2_2:-65434842 Msa0265210:CDS
AGAGCTTATTATTAGTGATG+AGG 0.540145 2_2:-65434900 Msa0265210:CDS
AGGTTGTTCAATGAGATGAT+CGG 0.544532 2_2:-65436019 Msa0265210:CDS
GGCAGAAGAGATGTTCAATC+GGG 0.546816 2_2:-65434798 Msa0265210:CDS
TCTGACACTATATTGTTGCT+GGG 0.554494 2_2:-65436115 Msa0265210:CDS
CCAACTCCATTTATCTCTCA+AGG 0.557133 2_2:-65437804 Msa0265210:intron
TGGTAATACGGAGAAGGCGA+TGG 0.560110 2_2:-65435981 Msa0265210:CDS
GAGCGTGTTCAGTTGAATGA+AGG 0.565936 2_2:+65438158 None:intergenic
AAGCGCATGGATATTTCAAA+CGG 0.566841 2_2:-65438092 Msa0265210:CDS
CGAGTTTATTATCAGTGATG+AGG 0.571726 2_2:-65436173 Msa0265210:CDS
GCAAGTTGGTAATACGGAGA+AGG 0.574234 2_2:-65435987 Msa0265210:CDS
AGAGATGTTCAATCAAGTTG+TGG 0.585094 2_2:-65436065 Msa0265210:CDS
GGAGGTTTACAGATCCATGA+AGG 0.589588 2_2:-65435960 Msa0265210:CDS
TCAATCAAGTTGTGGAAAAG+GGG 0.591104 2_2:-65436057 Msa0265210:CDS
TTGGAAATTACCATTGAAGG+TGG 0.592079 2_2:+65437965 None:intergenic
TTATCAGTGATGAGGAAGCT+GGG 0.593218 2_2:-65436165 Msa0265210:CDS
AAAGAACAAGATGATTGAGA+TGG 0.594568 2_2:-65436092 Msa0265210:CDS
GAACAAGATGATTGAGATGG+CGG 0.602226 2_2:-65436089 Msa0265210:CDS
TGATACTAAGACCAAGCGCA+TGG 0.605391 2_2:-65438105 Msa0265210:CDS
GAAGGAAGATTGTGATTTGG+GGG 0.611317 2_2:+65438176 None:intergenic
AAGGAACAAGATGATTGAGA+TGG 0.616432 2_2:-65434819 Msa0265210:CDS
AGAAGAGATGTTCAATCGGG+TGG 0.626222 2_2:-65434795 Msa0265210:CDS
TAATACGGAGAAGGCGATGG+AGG 0.641911 2_2:-65435978 Msa0265210:CDS
ACATGATACTGTTGTTGGGA+AGG 0.647551 2_2:-65434838 Msa0265210:CDS
GATGAAAATTGAAGTAGCAG+CGG 0.652533 2_2:+65438136 None:intergenic
TGAAGGAAGATTGTGATTTG+GGG 0.654826 2_2:+65438175 None:intergenic
AATATAGTGTCAGAATACAA+TGG 0.656425 2_2:+65436124 None:intergenic
GTTGTTCAATGAGATGATCG+GGG 0.665655 2_2:-65436017 Msa0265210:CDS
AAAGCAACAACAGTAGTATG+CGG 0.695765 2_2:-65438013 Msa0265210:CDS
GGTGGTTGAAACTGGAAACG+AGG 0.718348 2_2:-65434777 Msa0265210:CDS
AGGGGTTGAAACCAGATACG+AGG 0.767064 2_2:-65436039 Msa0265210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTAATAACAATGAGAA+AGG - chr2_2:65437627-65437646 Msa0265210:intron 15.0%
!! ATATTAATAACAATGAGAAA+GGG - chr2_2:65437628-65437647 Msa0265210:intron 15.0%
!!! TTTCAATTATATTGATGATT+TGG + chr2_2:65437840-65437859 None:intergenic 15.0%
!!! TTATGCACTTATTTTATTTG+AGG - chr2_2:65435276-65435295 Msa0265210:intron 20.0%
!! TAACTTATATGAAAATGAGA+TGG - chr2_2:65435415-65435434 Msa0265210:intron 20.0%
!!! GATATCATTTTCTATAAGAA+CGG + chr2_2:65435759-65435778 None:intergenic 20.0%
!! GCTAGAAAATTATTTCATTT+AGG - chr2_2:65435812-65435831 Msa0265210:CDS 20.0%
!! AATAATTTGATCATAGTTGA+CGG - chr2_2:65435857-65435876 Msa0265210:CDS 20.0%
!! ATAAGATAATAGTTTGACAT+TGG + chr2_2:65436181-65436200 None:intergenic 20.0%
!! GCTAGAAAATTATTTCATAT+AGG - chr2_2:65436460-65436479 Msa0265210:intron 20.0%
!! ATTAGGAATCTAATGAATAA+TGG - chr2_2:65437086-65437105 Msa0265210:intron 20.0%
!! ACAATTTGAGAAAATACAAA+TGG + chr2_2:65437924-65437943 None:intergenic 20.0%
!!! GTATTTTCTCAAATTGTTTT+TGG - chr2_2:65437927-65437946 Msa0265210:CDS 20.0%
!! TTCATTATTAATTGAAGCAT+AGG - chr2_2:65438055-65438074 Msa0265210:CDS 20.0%
!! TTTTTACCTTGAGAGATAAA+TGG + chr2_2:65435187-65435206 None:intergenic 25.0%
!!! TTGTTTCTAATAAGCTATCT+AGG - chr2_2:65435367-65435386 Msa0265210:intron 25.0%
!!! ATATTGACTTTGTTTGGAAT+TGG + chr2_2:65435517-65435536 None:intergenic 25.0%
!!! AGTTTGATATTGACTTTGTT+TGG + chr2_2:65435523-65435542 None:intergenic 25.0%
!!! GCTTTTTTCATAAGTTATTC+TGG - chr2_2:65435562-65435581 Msa0265210:intron 25.0%
! CAGTACTACTTAATACTTAT+AGG + chr2_2:65435890-65435909 None:intergenic 25.0%
! ACTGACACTTAAAAGATTAA+AGG - chr2_2:65435906-65435925 Msa0265210:CDS 25.0%
! CTTAAAAGATTAAAGGTCTT+AGG - chr2_2:65435913-65435932 Msa0265210:CDS 25.0%
! AATAATTTGATCGTAGTTGA+AGG - chr2_2:65436505-65436524 Msa0265210:intron 25.0%
! GATTAAAGGTCTTAAGAATT+AGG - chr2_2:65436561-65436580 Msa0265210:intron 25.0%
! TAGTTAGAATTATTAGCTAC+TGG + chr2_2:65436731-65436750 None:intergenic 25.0%
!! GGATTTGATAATTGTAACAT+AGG - chr2_2:65436782-65436801 Msa0265210:intron 25.0%
! AATATAGTGTCAGAATACAA+TGG + chr2_2:65436861-65436880 None:intergenic 25.0%
!!! TTATTTGCAAGTTGGTAATA+CGG - chr2_2:65436989-65437008 Msa0265210:intron 25.0%
! ACTTTCTGAACAAATTTATC+AGG + chr2_2:65437167-65437186 None:intergenic 25.0%
!! ATGTGAGTTTTCAAATTGTA+TGG - chr2_2:65437198-65437217 Msa0265210:intron 25.0%
! TAAATTTGTAGTGTCTTGTA+TGG - chr2_2:65437256-65437275 Msa0265210:intron 25.0%
! AAATTTGTAGTGTCTTGTAT+GGG - chr2_2:65437257-65437276 Msa0265210:intron 25.0%
!! TTCATTTTCATCATTTCTAC+TGG - chr2_2:65437398-65437417 Msa0265210:intron 25.0%
! CAACAAGCATAAAAGTAATT+TGG + chr2_2:65437469-65437488 None:intergenic 25.0%
!!! CAAATTACTTTTATGCTTGT+TGG - chr2_2:65437467-65437486 Msa0265210:intron 25.0%
! AGTACAAATGATCTTATCAA+CGG + chr2_2:65437598-65437617 None:intergenic 25.0%
! TTTCCTTATTGCGAAAATAA+TGG - chr2_2:65437688-65437707 Msa0265210:intron 25.0%
ATGAAGGAAGATTGTGATTT+GGG + chr2_2:65434811-65434830 None:intergenic 30.0%
AATGAAGGAAGATTGTGATT+TGG + chr2_2:65434812-65434831 None:intergenic 30.0%
!!! GTTTCTTGTTTTTGCATGAA+CGG + chr2_2:65434998-65435017 None:intergenic 30.0%
! TCTTTGGAAATTACCATTGA+AGG + chr2_2:65435023-65435042 None:intergenic 30.0%
AATAACTTGAACGCTTTCTT+TGG + chr2_2:65435039-65435058 None:intergenic 30.0%
! AACTTGGTTGAGTTTTTCTT+CGG + chr2_2:65435087-65435106 None:intergenic 30.0%
TTCTCAAGTCTAAATTGCTT+AGG - chr2_2:65435105-65435124 Msa0265210:intron 30.0%
ATCACAATTAAAACCCTGTT+TGG - chr2_2:65435206-65435225 Msa0265210:intron 30.0%
ATTAAAACCCTGTTTGGTTA+AGG - chr2_2:65435212-65435231 Msa0265210:intron 30.0%
ACAAGTTGCAAACAACTTAT+AGG + chr2_2:65435351-65435370 None:intergenic 30.0%
TTCTAATAAGCTATCTAGGA+CGG - chr2_2:65435371-65435390 Msa0265210:intron 30.0%
AATAAGCTGAAAACTACTCA+CGG - chr2_2:65435597-65435616 Msa0265210:intron 30.0%
GTTAGTCACTAGTGTAATTA+GGG + chr2_2:65435713-65435732 None:intergenic 30.0%
AGTTAGTCACTAGTGTAATT+AGG + chr2_2:65435714-65435733 None:intergenic 30.0%
ATTAAAGGTCTTAGGATTGA+AGG - chr2_2:65435921-65435940 Msa0265210:CDS 30.0%
CTAATTAGGGTTGTTTGAAT+TGG + chr2_2:65436348-65436367 None:intergenic 30.0%
! GTTAGTCACTAGTCTAATTA+GGG + chr2_2:65436361-65436380 None:intergenic 30.0%
! AGTTAGTCACTAGTCTAATT+AGG + chr2_2:65436362-65436381 None:intergenic 30.0%
CAACAGAACTTCTAATTAGT+TGG + chr2_2:65436429-65436448 None:intergenic 30.0%
GAAGGATATTAACCTATATG+TGG - chr2_2:65436523-65436542 Msa0265210:intron 30.0%
! ACCTTTAATCTTTCAAGTGT+CGG + chr2_2:65436551-65436570 None:intergenic 30.0%
GTCTTAAGAATTAGGATTGA+AGG - chr2_2:65436569-65436588 Msa0265210:intron 30.0%
TATTACTGGTGTTTATGTGT+GGG - chr2_2:65436633-65436652 Msa0265210:intron 30.0%
AAAGAACAAGATGATTGAGA+TGG - chr2_2:65436890-65436909 Msa0265210:intron 30.0%
! TTCAATCAAGTTGTGGAAAA+GGG - chr2_2:65436924-65436943 Msa0265210:intron 30.0%
ATAGTGAATGTCAATGAATC+CGG + chr2_2:65437062-65437081 None:intergenic 30.0%
! TGACATTCACTATACTGATT+AGG - chr2_2:65437069-65437088 Msa0265210:intron 30.0%
CAAGTACATCACAAACTATA+AGG + chr2_2:65437236-65437255 None:intergenic 30.0%
TATCTAATTTCCTGCATTGA+TGG - chr2_2:65437358-65437377 Msa0265210:intron 30.0%
! ATCTAATTTCCTGCATTGAT+GGG - chr2_2:65437359-65437378 Msa0265210:intron 30.0%
! ATTTTCATCATTTCTACTGG+AGG - chr2_2:65437401-65437420 Msa0265210:intron 30.0%
!! ATTACTTTTATGCTTGTTGG+CGG - chr2_2:65437470-65437489 Msa0265210:intron 30.0%
TACATCAATACAACCGAAAT+TGG + chr2_2:65437502-65437521 None:intergenic 30.0%
AGCATCACTAGTATATAGAT+TGG + chr2_2:65437572-65437591 None:intergenic 30.0%
! ACACCATTATTTTCGCAATA+AGG + chr2_2:65437694-65437713 None:intergenic 30.0%
!! TAATGGTGTAGAATTTTAGC+TGG - chr2_2:65437705-65437724 Msa0265210:intron 30.0%
GAGAAAATACAAATGGTTGA+AGG + chr2_2:65437917-65437936 None:intergenic 30.0%
AGAGCTTATTATTAGTGATG+AGG - chr2_2:65438082-65438101 Msa0265210:CDS 30.0%
TGAAGGAAGATTGTGATTTG+GGG + chr2_2:65434810-65434829 None:intergenic 35.0%
GATGAAAATTGAAGTAGCAG+CGG + chr2_2:65434849-65434868 None:intergenic 35.0%
AAGCGCATGGATATTTCAAA+CGG - chr2_2:65434890-65434909 Msa0265210:CDS 35.0%
AAAGCAACAACAGTAGTATG+CGG - chr2_2:65434969-65434988 Msa0265210:intron 35.0%
AAACAAGAAACCACCTTCAA+TGG - chr2_2:65435007-65435026 Msa0265210:intron 35.0%
TTGGAAATTACCATTGAAGG+TGG + chr2_2:65435020-65435039 None:intergenic 35.0%
GCAATTTAGACTTGAGAACT+TGG + chr2_2:65435103-65435122 None:intergenic 35.0%
!!! GCCTGATGTTTTAATTGTCT+TGG - chr2_2:65435136-65435155 Msa0265210:intron 35.0%
GCCAAGACAATTAAAACATC+AGG + chr2_2:65435140-65435159 None:intergenic 35.0%
GCTTAAACCTTAACCAAACA+GGG + chr2_2:65435222-65435241 None:intergenic 35.0%
TGCTTAAACCTTAACCAAAC+AGG + chr2_2:65435223-65435242 None:intergenic 35.0%
CAGCAGAACTTCTAATTAGT+TGG + chr2_2:65435781-65435800 None:intergenic 35.0%
ACAGACATAGAAATGATCGA+AGG + chr2_2:65435983-65436002 None:intergenic 35.0%
! CAACTTGCTTCCAATTAACT+AGG - chr2_2:65436038-65436057 Msa0265210:CDS 35.0%
TTGCTTCCAATTAACTAGGA+TGG - chr2_2:65436042-65436061 Msa0265210:CDS 35.0%
TGCTTCCAATTAACTAGGAT+GGG - chr2_2:65436043-65436062 Msa0265210:CDS 35.0%
CATAACCCATCCTAGTTAAT+TGG + chr2_2:65436051-65436070 None:intergenic 35.0%
!! CAATTAACTAGGATGGGTTA+TGG - chr2_2:65436049-65436068 Msa0265210:CDS 35.0%
ACCGACACTTGAAAGATTAA+AGG - chr2_2:65436547-65436566 Msa0265210:intron 35.0%
! ATTAGGATTGAAGGTGTGTT+TGG - chr2_2:65436578-65436597 Msa0265210:intron 35.0%
! AAGCAGTCACAAAGTATTAC+TGG - chr2_2:65436619-65436638 Msa0265210:intron 35.0%
GTATTACTGGTGTTTATGTG+TGG - chr2_2:65436632-65436651 Msa0265210:intron 35.0%
CGAGTTTATTATCAGTGATG+AGG - chr2_2:65436809-65436828 Msa0265210:intron 35.0%
TTCTGACACTATATTGTTGC+TGG - chr2_2:65436866-65436885 Msa0265210:intron 35.0%
TCTGACACTATATTGTTGCT+GGG - chr2_2:65436867-65436886 Msa0265210:intron 35.0%
! AGAGATGTTCAATCAAGTTG+TGG - chr2_2:65436917-65436936 Msa0265210:intron 35.0%
! GTTCAATCAAGTTGTGGAAA+AGG - chr2_2:65436923-65436942 Msa0265210:intron 35.0%
! TCAATCAAGTTGTGGAAAAG+GGG - chr2_2:65436925-65436944 Msa0265210:intron 35.0%
AGGTTGTTCAATGAGATGAT+CGG - chr2_2:65436963-65436982 Msa0265210:intron 35.0%
! GAATAATGGAGAACATGAAC+TGG - chr2_2:65437100-65437119 Msa0265210:intron 35.0%
!!! AGATTGACGTGTCTCTTTTT+TGG + chr2_2:65437335-65437354 None:intergenic 35.0%
AAAAAAGAGACACGTCAATC+TGG - chr2_2:65437334-65437353 Msa0265210:intron 35.0%
! TCTAATTTCCTGCATTGATG+GGG - chr2_2:65437360-65437379 Msa0265210:intron 35.0%
GAAATTGTAGCTCAAATGTC+TGG + chr2_2:65437447-65437466 None:intergenic 35.0%
ATGTAGTGTGTGAATGTGAT+AGG - chr2_2:65437517-65437536 Msa0265210:intron 35.0%
TGAATGTGATAGGTACTAAC+TGG - chr2_2:65437527-65437546 Msa0265210:intron 35.0%
ATTATTAGTGATGAGGAAGC+AGG - chr2_2:65438089-65438108 Msa0265210:CDS 35.0%
TTCTGACATGATACTGTTGT+TGG - chr2_2:65438139-65438158 Msa0265210:five_prime_UTR 35.0%
TCTGACATGATACTGTTGTT+GGG - chr2_2:65438140-65438159 Msa0265210:five_prime_UTR 35.0%
AAGGAACAAGATGATTGAGA+TGG - chr2_2:65438163-65438182 Msa0265210:five_prime_UTR 35.0%
! GAAGGAAGATTGTGATTTGG+GGG + chr2_2:65434809-65434828 None:intergenic 40.0%
! GTTTGAAATATCCATGCGCT+TGG + chr2_2:65434891-65434910 None:intergenic 40.0%
!! TTGGTGGTGGTTGAATTTGA+GGG + chr2_2:65434930-65434949 None:intergenic 40.0%
! TCTTCTGTTGTTGTTGTTGG+TGG + chr2_2:65434946-65434965 None:intergenic 40.0%
! GCTTCTTCTGTTGTTGTTGT+TGG + chr2_2:65434949-65434968 None:intergenic 40.0%
!!! TCTTGTTTTTGCATGAACGG+AGG + chr2_2:65434995-65435014 None:intergenic 40.0%
CCTTGAGAGATAAATGGAGT+TGG + chr2_2:65435181-65435200 None:intergenic 40.0%
CCAACTCCATTTATCTCTCA+AGG - chr2_2:65435178-65435197 Msa0265210:intron 40.0%
! CTTAGGATTGAAGGTGTGTT+TGG - chr2_2:65435930-65435949 Msa0265210:CDS 40.0%
ATTATCAGTGATGAGGAAGC+TGG - chr2_2:65436816-65436835 Msa0265210:intron 40.0%
TTATCAGTGATGAGGAAGCT+GGG - chr2_2:65436817-65436836 Msa0265210:intron 40.0%
AGGAAGCTGGGTATGATAAA+TGG - chr2_2:65436829-65436848 Msa0265210:intron 40.0%
GAACAAGATGATTGAGATGG+CGG - chr2_2:65436893-65436912 Msa0265210:intron 40.0%
TCATTGAACAACCTCGTATC+TGG + chr2_2:65436957-65436976 None:intergenic 40.0%
GGTTGTTCAATGAGATGATC+GGG - chr2_2:65436964-65436983 Msa0265210:intron 40.0%
GTTGTTCAATGAGATGATCG+GGG - chr2_2:65436965-65436984 Msa0265210:intron 40.0%
ATCGGGGTTTATTTGCAAGT+TGG - chr2_2:65436981-65437000 Msa0265210:intron 40.0%
GAAAACTCACATGTTTCAGC+TGG + chr2_2:65437190-65437209 None:intergenic 40.0%
GTCTTGTATGGGAAGAGTAA+TGG - chr2_2:65437268-65437287 Msa0265210:intron 40.0%
! AACTGGCATGGTTAGTTAGT+TGG - chr2_2:65437544-65437563 Msa0265210:intron 40.0%
AACTGCAAATGTACACAGAC+AGG + chr2_2:65437768-65437787 None:intergenic 40.0%
! TTGGTGTTTATGTGCCGATA+TGG - chr2_2:65437946-65437965 Msa0265210:CDS 40.0%
! TTATGTGCCGATATGGTGTA+TGG - chr2_2:65437953-65437972 Msa0265210:CDS 40.0%
! GTGAAGCATTAACACATACC+TGG + chr2_2:65437982-65438001 None:intergenic 40.0%
! GACTTAGAGTGATTAGCTAC+TGG + chr2_2:65438024-65438043 None:intergenic 40.0%
AGCAGGATATGATACATTGC+TGG - chr2_2:65438106-65438125 Msa0265210:CDS 40.0%
ACATGATACTGTTGTTGGGA+AGG - chr2_2:65438144-65438163 Msa0265210:five_prime_UTR 40.0%
TGGCAGAAGAGATGTTCAAT+CGG - chr2_2:65438183-65438202 Msa0265210:five_prime_UTR 40.0%
ATTTGGGGGAAGAGAGGTTT+CGG + chr2_2:65434795-65434814 None:intergenic 45.0%
! ATTGTGATTTGGGGGAAGAG+AGG + chr2_2:65434801-65434820 None:intergenic 45.0%
GAGCGTGTTCAGTTGAATGA+AGG + chr2_2:65434827-65434846 None:intergenic 45.0%
TGATACTAAGACCAAGCGCA+TGG - chr2_2:65434877-65434896 Msa0265210:CDS 45.0%
TGGTGGTTGAATTTGAGGGT+GGG + chr2_2:65434926-65434945 None:intergenic 45.0%
!! GTTGGTGGTGGTTGAATTTG+AGG + chr2_2:65434931-65434950 None:intergenic 45.0%
! TCTGTTGTTGTTGTTGGTGG+TGG + chr2_2:65434943-65434962 None:intergenic 45.0%
!! CAAGTGTCGGTACCACATAT+AGG + chr2_2:65436538-65436557 None:intergenic 45.0%
!! GCAAGTTGGTAATACGGAGA+AGG - chr2_2:65436995-65437014 Msa0265210:intron 45.0%
GGAGGTTTACAGATCCATGA+AGG - chr2_2:65437022-65437041 Msa0265210:intron 45.0%
TACAGATCCATGAAGGCTTC+AGG - chr2_2:65437029-65437048 Msa0265210:intron 45.0%
ACAGATCCATGAAGGCTTCA+GGG - chr2_2:65437030-65437049 Msa0265210:intron 45.0%
AAGTAGAACCCCATCAATGC+AGG + chr2_2:65437371-65437390 None:intergenic 45.0%
TACTGGAGGAGATTCACACT+GGG - chr2_2:65437415-65437434 Msa0265210:intron 45.0%
GTGATAGGTACTAACTGGCA+TGG - chr2_2:65437532-65437551 Msa0265210:intron 45.0%
AAATGTCTCCTAACTCCCAC+TGG - chr2_2:65437863-65437882 Msa0265210:CDS 45.0%
TGTCTTCGTCAAACACCAGT+GGG + chr2_2:65437881-65437900 None:intergenic 45.0%
CTGGACACCATACACCATAT+CGG + chr2_2:65437963-65437982 None:intergenic 45.0%
GGCAGAAGAGATGTTCAATC+GGG - chr2_2:65438184-65438203 Msa0265210:five_prime_UTR 45.0%
AGAAGAGATGTTCAATCGGG+TGG - chr2_2:65438187-65438206 Msa0265210:five_prime_UTR 45.0%
TTCAATCGGGTGGTTGAAAC+TGG - chr2_2:65438197-65438216 Msa0265210:five_prime_UTR 45.0%
!!! TTATTTTTTCATTTTAATTT+TGG - chr2_2:65436761-65436780 Msa0265210:intron 5.0%
GTGGTGGTTGAATTTGAGGG+TGG + chr2_2:65434927-65434946 None:intergenic 50.0%
AGGGGTTGAAACCAGATACG+AGG - chr2_2:65436943-65436962 Msa0265210:intron 50.0%
TGGTAATACGGAGAAGGCGA+TGG - chr2_2:65437001-65437020 Msa0265210:intron 50.0%
TAATACGGAGAAGGCGATGG+AGG - chr2_2:65437004-65437023 Msa0265210:intron 50.0%
CAAACACCCTGAAGCCTTCA+TGG + chr2_2:65437039-65437058 None:intergenic 50.0%
CTACTGGAGGAGATTCACAC+TGG - chr2_2:65437414-65437433 Msa0265210:intron 50.0%
GTCAAACACCAGTGGGAGTT+AGG + chr2_2:65437874-65437893 None:intergenic 50.0%
GTGTCTTCGTCAAACACCAG+TGG + chr2_2:65437882-65437901 None:intergenic 50.0%
CGATATGGTGTATGGTGTCC+AGG - chr2_2:65437961-65437980 Msa0265210:CDS 50.0%
GGTGGTTGAAACTGGAAACG+AGG - chr2_2:65438205-65438224 Msa0265210:five_prime_UTR 50.0%
! GAAGGCTTCAGGGTGTTTGC+CGG - chr2_2:65437040-65437059 Msa0265210:intron 55.0%
TTGGCGGCGACTGCCAATTT+CGG - chr2_2:65437486-65437505 Msa0265210:intron 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 65434766 65438238 65434766 ID=Msa0265210;Name=Msa0265210
chr2_2 mRNA 65434766 65438238 65434766 ID=Msa0265210-mRNA-1;Parent=Msa0265210;Name=Msa0265210-mRNA-1;_AED=0.31;_eAED=0.31;_QI=110|0.5|0.66|1|1|1|3|0|293
chr2_2 exon 65434766 65434927 65434766 ID=Msa0265210-mRNA-1:exon:20591;Parent=Msa0265210-mRNA-1
chr2_2 exon 65435805 65436200 65435805 ID=Msa0265210-mRNA-1:exon:20590;Parent=Msa0265210-mRNA-1
chr2_2 exon 65437805 65438238 65437805 ID=Msa0265210-mRNA-1:exon:20589;Parent=Msa0265210-mRNA-1
chr2_2 five_prime_UTR 65438129 65438238 65438129 ID=Msa0265210-mRNA-1:five_prime_utr;Parent=Msa0265210-mRNA-1
chr2_2 CDS 65437805 65438128 65437805 ID=Msa0265210-mRNA-1:cds;Parent=Msa0265210-mRNA-1
chr2_2 CDS 65435805 65436200 65435805 ID=Msa0265210-mRNA-1:cds;Parent=Msa0265210-mRNA-1
chr2_2 CDS 65434766 65434927 65434766 ID=Msa0265210-mRNA-1:cds;Parent=Msa0265210-mRNA-1
Gene Sequence

>Msa0265210

ATGATACTAAGACCAAGCGCATGGATATTTCAAACGGAATTGCTTTTCCCACCCTCAAATTCAACCACCACCAACAACAACAACAGAAGAAGCAAAGCAACAACAGTAGTATGCGGCCTCCGTTCATGCAAAAACAAGAAACCACCTTCAATGGTAATTTCCAAAGAAAGCGTTCAAGTTATTCACGCTCTCAAACTCGCTAAAAATTCCGAAGAAAAACTCAACCAAGTTCTCAAGTCTAAATTGCTTAGGTTATTGAAGCCTGATGTTTTAATTGTCTTGGCTGAATTGCATAGACAAAACCAACTCCATTTATCTCTCAAGGTTTTCGAGTTTATTATCAGTGATGAGGAAGCTGGGTATGATAAATGGCTGCTGCCATTGTATTCTGACACTATATTGTTGCTGGGAAAGAACAAGATGATTGAGATGGCGGAAGAGATGTTCAATCAAGTTGTGGAAAAGGGGTTGAAACCAGATACGAGGTTGTTCAATGAGATGATCGGGGTTTATTTGCAAGTTGGTAATACGGAGAAGGCGATGGAGGTTTACAGATCCATGAAGGCTTCAGGGTGTTTGCCGGATTCATTGACATTCACTATACTGATTAGGAATCTAATGAATAATGGAGAACATGAACTGGTTGAAACTTTGAAAAAAGAGAGTTTTGACTATGTCAATAAACCTGATAAATTTGTTCAGAAAGTCCAGCTGAAACATGTTTTAGAGCTTATTATTAGTGATGAGGAAGCAGGATATGATACATTGCTGGAACAGTTGTATTCTGACATGATACTGTTGTTGGGAAGGAACAAGATGATTGAGATGGCAGAAGAGATGTTCAATCGGGTGGTTGAAACTGGAAACGAGGTTGTTAAATGA

Protein sequence

>Msa0265210

MILRPSAWIFQTELLFPPSNSTTTNNNNRRSKATTVVCGLRSCKNKKPPSMVISKESVQVIHALKLAKNSEEKLNQVLKSKLLRLLKPDVLIVLAELHRQNQLHLSLKVFEFIISDEEAGYDKWLLPLYSDTILLLGKNKMIEMAEEMFNQVVEKGLKPDTRLFNEMIGVYLQVGNTEKAMEVYRSMKASGCLPDSLTFTILIRNLMNNGEHELVETLKKESFDYVNKPDKFVQKVQLKHVLELIISDEEAGYDTLLEQLYSDMILLLGRNKMIEMAEEMFNRVVETGNEVVK*