AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0419620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0419620 MtrunA17_Chr3g0118181 100.000 90 0 0 1 90 1 90 2.03e-63 186
Msa0419620 MtrunA17_Chr3g0122981 69.318 88 27 0 1 88 1 88 1.31e-43 136
Msa0419620 MtrunA17_Chr7g0219981 51.220 82 40 0 5 86 3 84 2.74e-29 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0419620 AT3G48140.1 74.118 85 22 0 4 88 3 87 1.32e-44 139
Msa0419620 AT3G29970.1 51.220 82 40 0 5 86 3 84 8.38e-30 101
Msa0419620 AT3G29970.2 47.059 68 36 0 18 85 1 68 2.33e-20 77.4
Msa0419620 AT3G29970.3 47.059 68 36 0 18 85 1 68 2.33e-20 77.4

Find 64 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAGTTGCAATTTCTAATA+TGG 0.117516 3_2:-67751721 Msa0419620:three_prime_UTR
AGTATTATTGTCATGCATTT+AGG 0.207950 3_2:-67752001 Msa0419620:three_prime_UTR
AAGTCGCAACTAAGTTATTT+TGG 0.233090 3_2:-67752081 Msa0419620:exon
AAGAATTTATCTCGATTATA+TGG 0.253564 3_2:+67751596 None:intergenic
TATAATCGAGATAAATTCTT+AGG 0.256268 3_2:-67751593 Msa0419620:three_prime_UTR
CCGCATAGATGCAATGTTAT+TGG 0.285948 3_2:+67753483 None:intergenic
AAACATCAGTACCTGACTTC+AGG 0.347160 3_2:+67753102 None:intergenic
TGAGTTGCAATTTCTAATAT+GGG 0.347749 3_2:-67751720 Msa0419620:three_prime_UTR
AAAGTTACTTCTAGGGAAAC+TGG 0.375628 3_2:-67751816 Msa0419620:three_prime_UTR
CAACAATTAACGCAACAAAC+AGG 0.381334 3_2:+67751913 None:intergenic
CTCTTCAACCTTGATGATCT+AGG 0.393617 3_2:+67751851 None:intergenic
TACCCTCTGTTTGCTGCGGT+TGG 0.396092 3_2:-67753177 Msa0419620:CDS
CCACAGCATGCACGTTGTTC+AGG 0.401037 3_2:+67751952 None:intergenic
AGTTTATTTATTCTTACAAA+TGG 0.404953 3_2:+67753441 None:intergenic
CTGCGGTTGGAGCTGCTGTT+GGG 0.406881 3_2:-67753164 Msa0419620:CDS
GCTGCGGTTGGAGCTGCTGT+TGG 0.426937 3_2:-67753165 Msa0419620:CDS
TATAAATTTGTTCGGTGTGC+CGG 0.440486 3_2:-67751881 Msa0419620:three_prime_UTR
TTGAGGCCGGGCATAATCTC+TGG 0.440854 3_2:+67752122 None:intergenic
GCAGACATGCTTGTTAAAAC+TGG 0.453798 3_2:-67751757 Msa0419620:three_prime_UTR
AACATCAGTACCTGACTTCA+GGG 0.462667 3_2:+67753103 None:intergenic
AACAAGCAGTCTCGAGCTGC+AGG 0.464020 3_2:-67752218 Msa0419620:CDS
AGTGAAGAAGCTGTTGAGGC+CGG 0.469984 3_2:+67752109 None:intergenic
TCTTCTTCAACTGCTATCCA+TGG 0.475644 3_2:-67753314 Msa0419620:exon
ATAAATTTGTGATGTTGTCT+AGG 0.477019 3_2:-67751785 Msa0419620:three_prime_UTR
GATGCAATGTTATTGGTCAT+TGG 0.477084 3_2:+67753490 None:intergenic
TTTCAACAAAGTTACTTCTA+GGG 0.478418 3_2:-67751823 Msa0419620:three_prime_UTR
AACTTGCTTACTTGTCCGTA+TGG 0.481659 3_2:+67753521 None:intergenic
GTCTCGAGCTGCAGGAGTGT+TGG 0.483795 3_2:-67752210 Msa0419620:CDS
GATTGCAATTTGCAATGGAA+TGG 0.501934 3_2:+67753373 None:intergenic
CTTGTATTCTTGAGTACTCA+CGG 0.510994 3_2:+67751680 None:intergenic
TCAGATTACAAAGCAACTGC+AGG 0.511045 3_2:+67751656 None:intergenic
AATTTGCAATGGAATGGAAA+TGG 0.511319 3_2:+67753379 None:intergenic
GGGTCTGATCCAGCGATTGG+TGG 0.513757 3_2:+67753291 None:intergenic
AAATAACTTAGTTGCGACTT+GGG 0.516597 3_2:+67752084 None:intergenic
TTCTGTGTACTTCTCTCCCT+CGG 0.519035 3_2:+67752178 None:intergenic
CTCGGGTCTGATCCAGCGAT+TGG 0.519677 3_2:+67753288 None:intergenic
GTGAAGAAGCTGTTGAGGCC+GGG 0.521542 3_2:+67752110 None:intergenic
TATCCATGGCCACCAATCGC+TGG 0.522115 3_2:-67753300 Msa0419620:exon
TCTGCATCAACCCTGAAGTC+AGG 0.524860 3_2:-67753113 Msa0419620:intron
AAAATAACTTAGTTGCGACT+TGG 0.526355 3_2:+67752083 None:intergenic
TCTCTGAGAGAGAAAGAGAA+TGG 0.528506 3_2:+67753402 None:intergenic
AAGATGATTGCAATTTGCAA+TGG 0.529414 3_2:+67753368 None:intergenic
GATAAATTCTTAGGATTGCA+CGG 0.531807 3_2:-67751584 Msa0419620:three_prime_UTR
GATGTTACGAACAAGTGAAA+AGG 0.535731 3_2:+67753134 None:intergenic
AGATCACCAGAGATTATGCC+CGG 0.537901 3_2:-67752128 Msa0419620:CDS
TTGTATTCTTGAGTACTCAC+GGG 0.562556 3_2:+67751681 None:intergenic
TGATGATCTAGGTTCGATAC+CGG 0.576141 3_2:+67751862 None:intergenic
TTTATCTCGATTATATGGAA+AGG 0.579344 3_2:+67751601 None:intergenic
GATCCAGCGATTGGTGGCCA+TGG 0.584846 3_2:+67753297 None:intergenic
CGCGGGTATCACTATCCATA+CGG 0.587673 3_2:-67753536 Msa0419620:five_prime_UTR
CTCCAACCGCAGCAAACAGA+GGG 0.612181 3_2:+67753175 None:intergenic
CCTGAACAACGTGCATGCTG+TGG 0.613414 3_2:-67751952 Msa0419620:three_prime_UTR
GTGTTGGAGAACTTTGCCGA+GGG 0.614956 3_2:-67752194 Msa0419620:CDS
AACAATTAACGCAACAAACA+GGG 0.625184 3_2:+67751914 None:intergenic
GGTATACCCTCTGTTTGCTG+CGG 0.632424 3_2:-67753181 Msa0419620:CDS
ACTCACGGGTGGTAACAAGC+TGG 0.637688 3_2:+67751695 None:intergenic
AGTGTTGGAGAACTTTGCCG+AGG 0.642190 3_2:-67752195 Msa0419620:CDS
GGTCAGTGAAGAAGCTGTTG+AGG 0.648101 3_2:+67752105 None:intergenic
GCTCCAACCGCAGCAAACAG+AGG 0.651727 3_2:+67753174 None:intergenic
TATTCTTGAGTACTCACGGG+TGG 0.653168 3_2:+67751684 None:intergenic
GTATCGAACCTAGATCATCA+AGG 0.676860 3_2:-67751859 Msa0419620:three_prime_UTR
CCAATAACATTGCATCTATG+CGG 0.692843 3_2:-67753483 Msa0419620:five_prime_UTR
CAATCGCTGGATCAGACCCG+AGG 0.698764 3_2:-67753287 Msa0419620:intron
AGTACACAGAACATTTGCTG+AGG 0.706764 3_2:-67752166 Msa0419620:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATATTAACAAAATTTAA+TGG - chr3_2:67752258-67752277 Msa0419620:intron 10.0%
!! AGATATTAACAAAATTTAAT+GGG - chr3_2:67752259-67752278 Msa0419620:intron 10.0%
!! TAGATATTAACAAAATTTAA+TGG - chr3_2:67752258-67752277 Msa0419620:intron 10.0%
!! AGATATTAACAAAATTTAAT+GGG - chr3_2:67752259-67752278 Msa0419620:intron 10.0%
!! AGTTTATTTATTCTTACAAA+TGG + chr3_2:67751685-67751704 None:intergenic 15.0%
!!! GAATATTCCTTTTTTATTTT+TGG - chr3_2:67752179-67752198 Msa0419620:CDS 15.0%
!! TTAATCTCTAATATCAAATA+GGG + chr3_2:67752510-67752529 None:intergenic 15.0%
!! ATTAATCTCTAATATCAAAT+AGG + chr3_2:67752511-67752530 None:intergenic 15.0%
!!! AGAGATTAATTTTTATTCAT+TGG - chr3_2:67752521-67752540 Msa0419620:intron 15.0%
!!! TGTAGTTTTATAAATTTGTT+CGG - chr3_2:67753234-67753253 Msa0419620:intron 15.0%
!! AGTTTATTTATTCTTACAAA+TGG + chr3_2:67751685-67751704 None:intergenic 15.0%
!!! GAATATTCCTTTTTTATTTT+TGG - chr3_2:67752179-67752198 Msa0419620:CDS 15.0%
!! TTAATCTCTAATATCAAATA+GGG + chr3_2:67752510-67752529 None:intergenic 15.0%
!! ATTAATCTCTAATATCAAAT+AGG + chr3_2:67752511-67752530 None:intergenic 15.0%
!!! AGAGATTAATTTTTATTCAT+TGG - chr3_2:67752521-67752540 Msa0419620:intron 15.0%
!!! TGTAGTTTTATAAATTTGTT+CGG - chr3_2:67753234-67753253 Msa0419620:intron 15.0%
!! AAGAAGATAACAAAAACAAA+GGG + chr3_2:67751784-67751803 None:intergenic 20.0%
!! TATACCTATAACAAAAAAGA+TGG + chr3_2:67751928-67751947 None:intergenic 20.0%
!! CTAATCGGATAATTAATTAA+TGG + chr3_2:67752148-67752167 None:intergenic 20.0%
!! AGGAAAACCAAAAATAAAAA+AGG + chr3_2:67752189-67752208 None:intergenic 20.0%
!! ACAAATTGTGAAAATTTAAG+CGG + chr3_2:67752235-67752254 None:intergenic 20.0%
!! GATACATGAGTTATTTAATT+TGG + chr3_2:67752332-67752351 None:intergenic 20.0%
!! AATTAAATAACTCATGTATC+TGG - chr3_2:67752332-67752351 Msa0419620:intron 20.0%
!!! TCCTAAAAATCACTTTTTTA+AGG + chr3_2:67752380-67752399 None:intergenic 20.0%
!!! GATTAATTTTTATTCATTGG+AGG - chr3_2:67752524-67752543 Msa0419620:intron 20.0%
!!! TTATTTTGGATTAATAACAG+TGG - chr3_2:67753056-67753075 Msa0419620:intron 20.0%
!! AAGAATTTATCTCGATTATA+TGG + chr3_2:67753530-67753549 None:intergenic 20.0%
!! TATAATCGAGATAAATTCTT+AGG - chr3_2:67753530-67753549 Msa0419620:five_prime_UTR 20.0%
!! AAGAAGATAACAAAAACAAA+GGG + chr3_2:67751784-67751803 None:intergenic 20.0%
!! TATACCTATAACAAAAAAGA+TGG + chr3_2:67751928-67751947 None:intergenic 20.0%
!! CTAATCGGATAATTAATTAA+TGG + chr3_2:67752148-67752167 None:intergenic 20.0%
!! AGGAAAACCAAAAATAAAAA+AGG + chr3_2:67752189-67752208 None:intergenic 20.0%
!! ACAAATTGTGAAAATTTAAG+CGG + chr3_2:67752235-67752254 None:intergenic 20.0%
!! GATACATGAGTTATTTAATT+TGG + chr3_2:67752332-67752351 None:intergenic 20.0%
!! AATTAAATAACTCATGTATC+TGG - chr3_2:67752332-67752351 Msa0419620:intron 20.0%
!!! TCCTAAAAATCACTTTTTTA+AGG + chr3_2:67752380-67752399 None:intergenic 20.0%
!!! GATTAATTTTTATTCATTGG+AGG - chr3_2:67752524-67752543 Msa0419620:intron 20.0%
!!! TTATTTTGGATTAATAACAG+TGG - chr3_2:67753056-67753075 Msa0419620:intron 20.0%
!! AAGAATTTATCTCGATTATA+TGG + chr3_2:67753530-67753549 None:intergenic 20.0%
!! TATAATCGAGATAAATTCTT+AGG - chr3_2:67753530-67753549 Msa0419620:five_prime_UTR 20.0%
! AGAAGATAACAAAAACAAAG+GGG + chr3_2:67751783-67751802 None:intergenic 25.0%
! GAAGAAGATAACAAAAACAA+AGG + chr3_2:67751785-67751804 None:intergenic 25.0%
!!! TTCACCATCTTTTTTGTTAT+AGG - chr3_2:67751921-67751940 Msa0419620:three_prime_UTR 25.0%
!!! TGATTGATTTTTCTCTTCTT+TGG - chr3_2:67752074-67752093 Msa0419620:exon 25.0%
! ATTCCATCATGTTTACTAAT+CGG + chr3_2:67752163-67752182 None:intergenic 25.0%
!! GCCTTAAAAAAGTGATTTTT+AGG - chr3_2:67752376-67752395 Msa0419620:intron 25.0%
! TTTGCACAAATAACGTTTAA+TGG - chr3_2:67752463-67752482 Msa0419620:intron 25.0%
!!! AATGGTGATTTTAAAGTTGT+TGG - chr3_2:67752481-67752500 Msa0419620:intron 25.0%
! TGAGATATAACTTAAAAGAG+TGG - chr3_2:67752600-67752619 Msa0419620:intron 25.0%
!! AATGAAAACTTTTATCTCAC+AGG - chr3_2:67752790-67752809 Msa0419620:intron 25.0%
!! ATGAAAACTTTTATCTCACA+GGG - chr3_2:67752791-67752810 Msa0419620:intron 25.0%
!!! TTGTTGTTTAATTTTTAGCC+AGG - chr3_2:67752823-67752842 Msa0419620:intron 25.0%
!!! TTTAATTTTTAGCCAGGATT+TGG - chr3_2:67752829-67752848 Msa0419620:intron 25.0%
!! ATGTATGTTTGTTCTTTTGA+TGG - chr3_2:67752872-67752891 Msa0419620:intron 25.0%
!! TGTATGTTTGTTCTTTTGAT+GGG - chr3_2:67752873-67752892 Msa0419620:intron 25.0%
! AGTATTATTGTCATGCATTT+AGG - chr3_2:67753122-67753141 Msa0419620:CDS 25.0%
!! TTTTCAACAAAGTTACTTCT+AGG - chr3_2:67753299-67753318 Msa0419620:exon 25.0%
! TTTCAACAAAGTTACTTCTA+GGG - chr3_2:67753300-67753319 Msa0419620:exon 25.0%
! ATAAATTTGTGATGTTGTCT+AGG - chr3_2:67753338-67753357 Msa0419620:five_prime_UTR 25.0%
! TGAGTTGCAATTTCTAATAT+GGG - chr3_2:67753403-67753422 Msa0419620:five_prime_UTR 25.0%
! TTTATCTCGATTATATGGAA+AGG + chr3_2:67753525-67753544 None:intergenic 25.0%
! AGAAGATAACAAAAACAAAG+GGG + chr3_2:67751783-67751802 None:intergenic 25.0%
! GAAGAAGATAACAAAAACAA+AGG + chr3_2:67751785-67751804 None:intergenic 25.0%
!!! TTCACCATCTTTTTTGTTAT+AGG - chr3_2:67751921-67751940 Msa0419620:three_prime_UTR 25.0%
!!! TGATTGATTTTTCTCTTCTT+TGG - chr3_2:67752074-67752093 Msa0419620:exon 25.0%
! ATTCCATCATGTTTACTAAT+CGG + chr3_2:67752163-67752182 None:intergenic 25.0%
!! GCCTTAAAAAAGTGATTTTT+AGG - chr3_2:67752376-67752395 Msa0419620:intron 25.0%
! TTTGCACAAATAACGTTTAA+TGG - chr3_2:67752463-67752482 Msa0419620:intron 25.0%
!!! AATGGTGATTTTAAAGTTGT+TGG - chr3_2:67752481-67752500 Msa0419620:intron 25.0%
! TGAGATATAACTTAAAAGAG+TGG - chr3_2:67752600-67752619 Msa0419620:intron 25.0%
!! AATGAAAACTTTTATCTCAC+AGG - chr3_2:67752790-67752809 Msa0419620:intron 25.0%
!! ATGAAAACTTTTATCTCACA+GGG - chr3_2:67752791-67752810 Msa0419620:intron 25.0%
!!! TTGTTGTTTAATTTTTAGCC+AGG - chr3_2:67752823-67752842 Msa0419620:intron 25.0%
!!! TTTAATTTTTAGCCAGGATT+TGG - chr3_2:67752829-67752848 Msa0419620:intron 25.0%
!! ATGTATGTTTGTTCTTTTGA+TGG - chr3_2:67752872-67752891 Msa0419620:intron 25.0%
!! TGTATGTTTGTTCTTTTGAT+GGG - chr3_2:67752873-67752892 Msa0419620:intron 25.0%
! AGTATTATTGTCATGCATTT+AGG - chr3_2:67753122-67753141 Msa0419620:CDS 25.0%
!! TTTTCAACAAAGTTACTTCT+AGG - chr3_2:67753299-67753318 Msa0419620:exon 25.0%
! TTTCAACAAAGTTACTTCTA+GGG - chr3_2:67753300-67753319 Msa0419620:exon 25.0%
! ATAAATTTGTGATGTTGTCT+AGG - chr3_2:67753338-67753357 Msa0419620:five_prime_UTR 25.0%
! TGAGTTGCAATTTCTAATAT+GGG - chr3_2:67753403-67753422 Msa0419620:five_prime_UTR 25.0%
! TTTATCTCGATTATATGGAA+AGG + chr3_2:67753525-67753544 None:intergenic 25.0%
AATTTGCAATGGAATGGAAA+TGG + chr3_2:67751747-67751766 None:intergenic 30.0%
AAGATGATTGCAATTTGCAA+TGG + chr3_2:67751758-67751777 None:intergenic 30.0%
ACGAAATGCAAAGTAGTAAA+TGG + chr3_2:67751887-67751906 None:intergenic 30.0%
TATCCGATTAGTAAACATGA+TGG - chr3_2:67752157-67752176 Msa0419620:CDS 30.0%
CATCATATCATTTCTCAGAT+AGG + chr3_2:67752209-67752228 None:intergenic 30.0%
!!! TTTGTTCTTTTGATGGGTTT+AGG - chr3_2:67752879-67752898 Msa0419620:intron 30.0%
!!! TTGTTCTTTTGATGGGTTTA+GGG - chr3_2:67752880-67752899 Msa0419620:intron 30.0%
AAATAACTTAGTTGCGACTT+GGG + chr3_2:67753042-67753061 None:intergenic 30.0%
AAAATAACTTAGTTGCGACT+TGG + chr3_2:67753043-67753062 None:intergenic 30.0%
! AAGTCGCAACTAAGTTATTT+TGG - chr3_2:67753042-67753061 Msa0419620:intron 30.0%
AACAATTAACGCAACAAACA+GGG + chr3_2:67753212-67753231 None:intergenic 30.0%
CTGAGTTGCAATTTCTAATA+TGG - chr3_2:67753402-67753421 Msa0419620:five_prime_UTR 30.0%
GATAAATTCTTAGGATTGCA+CGG - chr3_2:67753539-67753558 Msa0419620:five_prime_UTR 30.0%
AATTTGCAATGGAATGGAAA+TGG + chr3_2:67751747-67751766 None:intergenic 30.0%
AAGATGATTGCAATTTGCAA+TGG + chr3_2:67751758-67751777 None:intergenic 30.0%
ACGAAATGCAAAGTAGTAAA+TGG + chr3_2:67751887-67751906 None:intergenic 30.0%
TATCCGATTAGTAAACATGA+TGG - chr3_2:67752157-67752176 Msa0419620:CDS 30.0%
CATCATATCATTTCTCAGAT+AGG + chr3_2:67752209-67752228 None:intergenic 30.0%
!!! TTTGTTCTTTTGATGGGTTT+AGG - chr3_2:67752879-67752898 Msa0419620:intron 30.0%
!!! TTGTTCTTTTGATGGGTTTA+GGG - chr3_2:67752880-67752899 Msa0419620:intron 30.0%
AAATAACTTAGTTGCGACTT+GGG + chr3_2:67753042-67753061 None:intergenic 30.0%
AAAATAACTTAGTTGCGACT+TGG + chr3_2:67753043-67753062 None:intergenic 30.0%
! AAGTCGCAACTAAGTTATTT+TGG - chr3_2:67753042-67753061 Msa0419620:intron 30.0%
AACAATTAACGCAACAAACA+GGG + chr3_2:67753212-67753231 None:intergenic 30.0%
CTGAGTTGCAATTTCTAATA+TGG - chr3_2:67753402-67753421 Msa0419620:five_prime_UTR 30.0%
GATAAATTCTTAGGATTGCA+CGG - chr3_2:67753539-67753558 Msa0419620:five_prime_UTR 30.0%
GATGCAATGTTATTGGTCAT+TGG + chr3_2:67751636-67751655 None:intergenic 35.0%
CCAATAACATTGCATCTATG+CGG - chr3_2:67751640-67751659 Msa0419620:three_prime_UTR 35.0%
GATTGCAATTTGCAATGGAA+TGG + chr3_2:67751753-67751772 None:intergenic 35.0%
TGGCAAAATACAGATCGAAA+AGG + chr3_2:67751867-67751886 None:intergenic 35.0%
TTGCATTTCGTAAGAGAGTT+AGG - chr3_2:67751896-67751915 Msa0419620:three_prime_UTR 35.0%
TGCATTTCGTAAGAGAGTTA+GGG - chr3_2:67751897-67751916 Msa0419620:three_prime_UTR 35.0%
GATGTTACGAACAAGTGAAA+AGG + chr3_2:67751992-67752011 None:intergenic 35.0%
! GAGTTTGACTTATCTCAGAT+CGG - chr3_2:67752096-67752115 Msa0419620:CDS 35.0%
ACTCATGTATCTGGACTAAA+TGG - chr3_2:67752341-67752360 Msa0419620:intron 35.0%
GACAAATCAGCTTCAATCAT+CGG + chr3_2:67752425-67752444 None:intergenic 35.0%
AACTTAAAAGAGTGGCATCA+TGG - chr3_2:67752608-67752627 Msa0419620:intron 35.0%
AAATCCATGATATGTTTGCC+TGG - chr3_2:67752688-67752707 Msa0419620:intron 35.0%
! TGGTGTTTGAAGGAGTATAA+TGG - chr3_2:67752849-67752868 Msa0419620:intron 35.0%
CAACAATTAACGCAACAAAC+AGG + chr3_2:67753213-67753232 None:intergenic 35.0%
!! TATAAATTTGTTCGGTGTGC+CGG - chr3_2:67753242-67753261 Msa0419620:intron 35.0%
! AAAGTTACTTCTAGGGAAAC+TGG - chr3_2:67753307-67753326 Msa0419620:exon 35.0%
TTGTATTCTTGAGTACTCAC+GGG + chr3_2:67753445-67753464 None:intergenic 35.0%
CTTGTATTCTTGAGTACTCA+CGG + chr3_2:67753446-67753465 None:intergenic 35.0%
GATGCAATGTTATTGGTCAT+TGG + chr3_2:67751636-67751655 None:intergenic 35.0%
CCAATAACATTGCATCTATG+CGG - chr3_2:67751640-67751659 Msa0419620:three_prime_UTR 35.0%
GATTGCAATTTGCAATGGAA+TGG + chr3_2:67751753-67751772 None:intergenic 35.0%
TGGCAAAATACAGATCGAAA+AGG + chr3_2:67751867-67751886 None:intergenic 35.0%
TTGCATTTCGTAAGAGAGTT+AGG - chr3_2:67751896-67751915 Msa0419620:three_prime_UTR 35.0%
TGCATTTCGTAAGAGAGTTA+GGG - chr3_2:67751897-67751916 Msa0419620:three_prime_UTR 35.0%
GATGTTACGAACAAGTGAAA+AGG + chr3_2:67751992-67752011 None:intergenic 35.0%
! GAGTTTGACTTATCTCAGAT+CGG - chr3_2:67752096-67752115 Msa0419620:CDS 35.0%
ACTCATGTATCTGGACTAAA+TGG - chr3_2:67752341-67752360 Msa0419620:intron 35.0%
GACAAATCAGCTTCAATCAT+CGG + chr3_2:67752425-67752444 None:intergenic 35.0%
AACTTAAAAGAGTGGCATCA+TGG - chr3_2:67752608-67752627 Msa0419620:intron 35.0%
AAATCCATGATATGTTTGCC+TGG - chr3_2:67752688-67752707 Msa0419620:intron 35.0%
! TGGTGTTTGAAGGAGTATAA+TGG - chr3_2:67752849-67752868 Msa0419620:intron 35.0%
CAACAATTAACGCAACAAAC+AGG + chr3_2:67753213-67753232 None:intergenic 35.0%
!! TATAAATTTGTTCGGTGTGC+CGG - chr3_2:67753242-67753261 Msa0419620:intron 35.0%
! AAAGTTACTTCTAGGGAAAC+TGG - chr3_2:67753307-67753326 Msa0419620:exon 35.0%
TTGTATTCTTGAGTACTCAC+GGG + chr3_2:67753445-67753464 None:intergenic 35.0%
CTTGTATTCTTGAGTACTCA+CGG + chr3_2:67753446-67753465 None:intergenic 35.0%
! AACTTGCTTACTTGTCCGTA+TGG + chr3_2:67751605-67751624 None:intergenic 40.0%
CCGCATAGATGCAATGTTAT+TGG + chr3_2:67751643-67751662 None:intergenic 40.0%
! TCTCTGAGAGAGAAAGAGAA+TGG + chr3_2:67751724-67751743 None:intergenic 40.0%
TCTTCTTCAACTGCTATCCA+TGG - chr3_2:67751809-67751828 Msa0419620:three_prime_UTR 40.0%
AACATCAGTACCTGACTTCA+GGG + chr3_2:67752023-67752042 None:intergenic 40.0%
AAACATCAGTACCTGACTTC+AGG + chr3_2:67752024-67752043 None:intergenic 40.0%
AAGTCGCTTATAGAGAGAGT+AGG + chr3_2:67752300-67752319 None:intergenic 40.0%
TCAACCAGGCAAACATATCA+TGG + chr3_2:67752695-67752714 None:intergenic 40.0%
CTGGTTGAGTGAAATGAAGT+CGG - chr3_2:67752707-67752726 Msa0419620:intron 40.0%
! AGTACACAGAACATTTGCTG+AGG - chr3_2:67752957-67752976 Msa0419620:intron 40.0%
TGATGATCTAGGTTCGATAC+CGG + chr3_2:67753264-67753283 None:intergenic 40.0%
GTATCGAACCTAGATCATCA+AGG - chr3_2:67753264-67753283 Msa0419620:intron 40.0%
! CTCTTCAACCTTGATGATCT+AGG + chr3_2:67753275-67753294 None:intergenic 40.0%
! GCAGACATGCTTGTTAAAAC+TGG - chr3_2:67753366-67753385 Msa0419620:five_prime_UTR 40.0%
TCAGATTACAAAGCAACTGC+AGG + chr3_2:67753470-67753489 None:intergenic 40.0%
! AACTTGCTTACTTGTCCGTA+TGG + chr3_2:67751605-67751624 None:intergenic 40.0%
CCGCATAGATGCAATGTTAT+TGG + chr3_2:67751643-67751662 None:intergenic 40.0%
! TCTCTGAGAGAGAAAGAGAA+TGG + chr3_2:67751724-67751743 None:intergenic 40.0%
TCTTCTTCAACTGCTATCCA+TGG - chr3_2:67751809-67751828 Msa0419620:three_prime_UTR 40.0%
AACATCAGTACCTGACTTCA+GGG + chr3_2:67752023-67752042 None:intergenic 40.0%
AAACATCAGTACCTGACTTC+AGG + chr3_2:67752024-67752043 None:intergenic 40.0%
AAGTCGCTTATAGAGAGAGT+AGG + chr3_2:67752300-67752319 None:intergenic 40.0%
TCAACCAGGCAAACATATCA+TGG + chr3_2:67752695-67752714 None:intergenic 40.0%
CTGGTTGAGTGAAATGAAGT+CGG - chr3_2:67752707-67752726 Msa0419620:intron 40.0%
! AGTACACAGAACATTTGCTG+AGG - chr3_2:67752957-67752976 Msa0419620:intron 40.0%
TGATGATCTAGGTTCGATAC+CGG + chr3_2:67753264-67753283 None:intergenic 40.0%
GTATCGAACCTAGATCATCA+AGG - chr3_2:67753264-67753283 Msa0419620:intron 40.0%
! CTCTTCAACCTTGATGATCT+AGG + chr3_2:67753275-67753294 None:intergenic 40.0%
! GCAGACATGCTTGTTAAAAC+TGG - chr3_2:67753366-67753385 Msa0419620:five_prime_UTR 40.0%
TCAGATTACAAAGCAACTGC+AGG + chr3_2:67753470-67753489 None:intergenic 40.0%
AGATCGAAAAGGACTCACCT+CGG + chr3_2:67751856-67751875 None:intergenic 45.0%
CGACTTCATTTCACTCAACC+AGG + chr3_2:67752709-67752728 None:intergenic 45.0%
!! AGCCAGGATTTGGTGTTTGA+AGG - chr3_2:67752839-67752858 Msa0419620:intron 45.0%
CTCCTTCAAACACCAAATCC+TGG + chr3_2:67752844-67752863 None:intergenic 45.0%
TTCTGTGTACTTCTCTCCCT+CGG + chr3_2:67752948-67752967 None:intergenic 45.0%
AGATCACCAGAGATTATGCC+CGG - chr3_2:67752995-67753014 Msa0419620:intron 45.0%
TATTCTTGAGTACTCACGGG+TGG + chr3_2:67753442-67753461 None:intergenic 45.0%
AGATCGAAAAGGACTCACCT+CGG + chr3_2:67751856-67751875 None:intergenic 45.0%
CGACTTCATTTCACTCAACC+AGG + chr3_2:67752709-67752728 None:intergenic 45.0%
!! AGCCAGGATTTGGTGTTTGA+AGG - chr3_2:67752839-67752858 Msa0419620:intron 45.0%
CTCCTTCAAACACCAAATCC+TGG + chr3_2:67752844-67752863 None:intergenic 45.0%
TTCTGTGTACTTCTCTCCCT+CGG + chr3_2:67752948-67752967 None:intergenic 45.0%
AGATCACCAGAGATTATGCC+CGG - chr3_2:67752995-67753014 Msa0419620:intron 45.0%
TATTCTTGAGTACTCACGGG+TGG + chr3_2:67753442-67753461 None:intergenic 45.0%
CGCGGGTATCACTATCCATA+CGG - chr3_2:67751587-67751606 Msa0419620:three_prime_UTR 50.0%
GATCGAAAAGGACTCACCTC+GGG + chr3_2:67751855-67751874 None:intergenic 50.0%
! GGTATACCCTCTGTTTGCTG+CGG - chr3_2:67751942-67751961 Msa0419620:three_prime_UTR 50.0%
TCTGCATCAACCCTGAAGTC+AGG - chr3_2:67752010-67752029 Msa0419620:three_prime_UTR 50.0%
! AGTGTTGGAGAACTTTGCCG+AGG - chr3_2:67752928-67752947 Msa0419620:intron 50.0%
GTGTTGGAGAACTTTGCCGA+GGG - chr3_2:67752929-67752948 Msa0419620:intron 50.0%
AGTGAAGAAGCTGTTGAGGC+CGG + chr3_2:67753017-67753036 None:intergenic 50.0%
GGTCAGTGAAGAAGCTGTTG+AGG + chr3_2:67753021-67753040 None:intergenic 50.0%
CGCGGGTATCACTATCCATA+CGG - chr3_2:67751587-67751606 Msa0419620:three_prime_UTR 50.0%
GATCGAAAAGGACTCACCTC+GGG + chr3_2:67751855-67751874 None:intergenic 50.0%
! GGTATACCCTCTGTTTGCTG+CGG - chr3_2:67751942-67751961 Msa0419620:three_prime_UTR 50.0%
TCTGCATCAACCCTGAAGTC+AGG - chr3_2:67752010-67752029 Msa0419620:three_prime_UTR 50.0%
! AGTGTTGGAGAACTTTGCCG+AGG - chr3_2:67752928-67752947 Msa0419620:intron 50.0%
GTGTTGGAGAACTTTGCCGA+GGG - chr3_2:67752929-67752948 Msa0419620:intron 50.0%
AGTGAAGAAGCTGTTGAGGC+CGG + chr3_2:67753017-67753036 None:intergenic 50.0%
GGTCAGTGAAGAAGCTGTTG+AGG + chr3_2:67753021-67753040 None:intergenic 50.0%
TATCCATGGCCACCAATCGC+TGG - chr3_2:67751823-67751842 Msa0419620:three_prime_UTR 55.0%
! TACCCTCTGTTTGCTGCGGT+TGG - chr3_2:67751946-67751965 Msa0419620:three_prime_UTR 55.0%
CTCCAACCGCAGCAAACAGA+GGG + chr3_2:67751951-67751970 None:intergenic 55.0%
AACAAGCAGTCTCGAGCTGC+AGG - chr3_2:67752905-67752924 Msa0419620:intron 55.0%
TTGAGGCCGGGCATAATCTC+TGG + chr3_2:67753004-67753023 None:intergenic 55.0%
GTGAAGAAGCTGTTGAGGCC+GGG + chr3_2:67753016-67753035 None:intergenic 55.0%
CCACAGCATGCACGTTGTTC+AGG + chr3_2:67753174-67753193 None:intergenic 55.0%
CCTGAACAACGTGCATGCTG+TGG - chr3_2:67753171-67753190 Msa0419620:CDS 55.0%
ACTCACGGGTGGTAACAAGC+TGG + chr3_2:67753431-67753450 None:intergenic 55.0%
TATCCATGGCCACCAATCGC+TGG - chr3_2:67751823-67751842 Msa0419620:three_prime_UTR 55.0%
! TACCCTCTGTTTGCTGCGGT+TGG - chr3_2:67751946-67751965 Msa0419620:three_prime_UTR 55.0%
CTCCAACCGCAGCAAACAGA+GGG + chr3_2:67751951-67751970 None:intergenic 55.0%
AACAAGCAGTCTCGAGCTGC+AGG - chr3_2:67752905-67752924 Msa0419620:intron 55.0%
TTGAGGCCGGGCATAATCTC+TGG + chr3_2:67753004-67753023 None:intergenic 55.0%
GTGAAGAAGCTGTTGAGGCC+GGG + chr3_2:67753016-67753035 None:intergenic 55.0%
CCACAGCATGCACGTTGTTC+AGG + chr3_2:67753174-67753193 None:intergenic 55.0%
CCTGAACAACGTGCATGCTG+TGG - chr3_2:67753171-67753190 Msa0419620:CDS 55.0%
ACTCACGGGTGGTAACAAGC+TGG + chr3_2:67753431-67753450 None:intergenic 55.0%
! GATCCAGCGATTGGTGGCCA+TGG + chr3_2:67751829-67751848 None:intergenic 60.0%
GGGTCTGATCCAGCGATTGG+TGG + chr3_2:67751835-67751854 None:intergenic 60.0%
CTCGGGTCTGATCCAGCGAT+TGG + chr3_2:67751838-67751857 None:intergenic 60.0%
CAATCGCTGGATCAGACCCG+AGG - chr3_2:67751836-67751855 Msa0419620:three_prime_UTR 60.0%
GCTCCAACCGCAGCAAACAG+AGG + chr3_2:67751952-67751971 None:intergenic 60.0%
CTGCGGTTGGAGCTGCTGTT+GGG - chr3_2:67751959-67751978 Msa0419620:three_prime_UTR 60.0%
! GTCTCGAGCTGCAGGAGTGT+TGG - chr3_2:67752913-67752932 Msa0419620:intron 60.0%
! GATCCAGCGATTGGTGGCCA+TGG + chr3_2:67751829-67751848 None:intergenic 60.0%
GGGTCTGATCCAGCGATTGG+TGG + chr3_2:67751835-67751854 None:intergenic 60.0%
CTCGGGTCTGATCCAGCGAT+TGG + chr3_2:67751838-67751857 None:intergenic 60.0%
CAATCGCTGGATCAGACCCG+AGG - chr3_2:67751836-67751855 Msa0419620:three_prime_UTR 60.0%
GCTCCAACCGCAGCAAACAG+AGG + chr3_2:67751952-67751971 None:intergenic 60.0%
CTGCGGTTGGAGCTGCTGTT+GGG - chr3_2:67751959-67751978 Msa0419620:three_prime_UTR 60.0%
! GTCTCGAGCTGCAGGAGTGT+TGG - chr3_2:67752913-67752932 Msa0419620:intron 60.0%
GCTGCGGTTGGAGCTGCTGT+TGG - chr3_2:67751958-67751977 Msa0419620:three_prime_UTR 65.0%
GCTGCGGTTGGAGCTGCTGT+TGG - chr3_2:67751958-67751977 Msa0419620:three_prime_UTR 65.0%
TACCCGCGTCACTCAGCCCG+AGG + chr3_2:67751575-67751594 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 67751574 67753571 67751574 ID=Msa0419620;Name=Msa0419620
chr3_2 mRNA 67751574 67753571 67751574 ID=Msa0419620-mRNA-1;Parent=Msa0419620;Name=Msa0419620-mRNA-1;_AED=0.01;_eAED=0.01;_QI=254|1|1|1|1|1|3|517|90
chr3_2 exon 67751574 67752244 67751574 ID=Msa0419620-mRNA-1:exon:15829;Parent=Msa0419620-mRNA-1
chr3_2 exon 67753114 67753202 67753114 ID=Msa0419620-mRNA-1:exon:15828;Parent=Msa0419620-mRNA-1
chr3_2 exon 67753288 67753571 67753288 ID=Msa0419620-mRNA-1:exon:15827;Parent=Msa0419620-mRNA-1
chr3_2 five_prime_UTR 67753318 67753571 67753318 ID=Msa0419620-mRNA-1:five_prime_utr;Parent=Msa0419620-mRNA-1
chr3_2 CDS 67753288 67753317 67753288 ID=Msa0419620-mRNA-1:cds;Parent=Msa0419620-mRNA-1
chr3_2 CDS 67753114 67753202 67753114 ID=Msa0419620-mRNA-1:cds;Parent=Msa0419620-mRNA-1
chr3_2 CDS 67752091 67752244 67752091 ID=Msa0419620-mRNA-1:cds;Parent=Msa0419620-mRNA-1
chr3_2 three_prime_UTR 67751574 67752090 67751574 ID=Msa0419620-mRNA-1:three_prime_utr;Parent=Msa0419620-mRNA-1
Gene Sequence

>Msa0419620

ATGGCCACCAATCGCTGGATCAGACCCGAGGTATACCCTCTGTTTGCTGCGGTTGGAGCTGCTGTTGGGATCTGTGCCTTTTCACTTGTTCGTAACATCTGCATCAACCCTGAAGTCAGGGTGAACAAGCAGTCTCGAGCTGCAGGAGTGTTGGAGAACTTTGCCGAGGGAGAGAAGTACACAGAACATTTGCTGAGGAAGTTTTCACGCAACAGATCACCAGAGATTATGCCCGGCCTCAACAGCTTCTTCACTGACCCAAGTCGCAACTAA

Protein sequence

>Msa0419620

MATNRWIRPEVYPLFAAVGAAVGICAFSLVRNICINPEVRVNKQSRAAGVLENFAEGEKYTEHLLRKFSRNRSPEIMPGLNSFFTDPSRN*