AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0252180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0252180 MtrunA17_Chr2g0310591 97.849 93 2 0 1 93 300 392 4.37e-59 185
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0252180 AT1G56180.1 83.871 93 15 0 1 93 297 389 1.15e-49 161

Find 53 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTATTTATTATTATTT+TGG 0.144406 2_2:-42888793 Msa0252180:three_prime_UTR
GCAGCTGAGGCTCTTATTTA+TGG 0.164924 2_2:-42889676 Msa0252180:CDS
CTTGCAGATGCCGCATGTTT+AGG 0.298757 2_2:-42889120 Msa0252180:three_prime_UTR
TAACCATGTTGGGTACAGTT+TGG 0.349640 2_2:+42889023 None:intergenic
GCAGTCTGAGTGCTGTAATT+AGG 0.353790 2_2:-42889370 Msa0252180:CDS
AACCATGTTGGGTACAGTTT+GGG 0.357705 2_2:+42889024 None:intergenic
CTTTCAAACAGAGCTGCTAT+TGG 0.375015 2_2:+42888729 None:intergenic
TCATTTGATTGACTCTGTTA+TGG 0.380808 2_2:+42889087 None:intergenic
ACAGAGCTGCTATTGGTGTT+GGG 0.381936 2_2:+42888736 None:intergenic
ATGTATTAGCAAAAGCTATT+AGG 0.387717 2_2:-42888844 Msa0252180:three_prime_UTR
AATCATGAGGAGGTTGGTCT+TGG 0.412710 2_2:-42888704 Msa0252180:three_prime_UTR
CACAATAACTTCATTTCCAC+TGG 0.415042 2_2:+42888989 None:intergenic
CAATGGATTTGACGTGGAAC+TGG 0.424918 2_2:-42889163 Msa0252180:three_prime_UTR
ATAATAAATAAAGAATATAT+AGG 0.426921 2_2:+42888801 None:intergenic
AACAGAGCTGCTATTGGTGT+TGG 0.435538 2_2:+42888735 None:intergenic
AATCTTATAATTTGCTCAAG+TGG 0.477761 2_2:-42889439 Msa0252180:CDS
ATTACATATCTAACCATGTT+GGG 0.482317 2_2:+42889013 None:intergenic
GCTAACCCGTATGCAACTTA+AGG 0.489576 2_2:+42889283 None:intergenic
AAATTGCCTTAAGTTGCATA+CGG 0.501610 2_2:-42889289 Msa0252180:three_prime_UTR
GGGGTTCACCACTCCAGTCA+TGG 0.502240 2_2:+42888756 None:intergenic
CTTATTTATGGTGAGGCAGA+GGG 0.507075 2_2:-42889664 Msa0252180:CDS
TTCAGCAGGTGACATTATTG+AGG 0.510679 2_2:-42889052 Msa0252180:three_prime_UTR
GCCTCCATTGTCTGTAGCAG+AGG 0.526930 2_2:-42889593 Msa0252180:intron
TGCTAATACATTATGGAACA+TGG 0.526936 2_2:+42888856 None:intergenic
CAGAGCTGCTATTGGTGTTG+GGG 0.527273 2_2:+42888737 None:intergenic
GGGTTATCACAGATTTGCAA+TGG 0.528271 2_2:-42889180 Msa0252180:three_prime_UTR
CCGAGCTGCTGTTAAAGCAT+TGG 0.528568 2_2:-42889402 Msa0252180:CDS
AATTGCCTTAAGTTGCATAC+GGG 0.528591 2_2:-42889288 Msa0252180:intron
TCTTATTTATGGTGAGGCAG+AGG 0.537919 2_2:-42889665 Msa0252180:CDS
CTTCTACTAGTAACCATGAC+TGG 0.540785 2_2:-42888769 Msa0252180:three_prime_UTR
AAAGAGAATCATGAGGAGGT+TGG 0.542701 2_2:-42888710 Msa0252180:three_prime_UTR
AAGACCTCTGCTACAGACAA+TGG 0.575943 2_2:+42889589 None:intergenic
TGTAAAAGAAAACTTATGCA+CGG 0.580796 2_2:+42888934 None:intergenic
CCAATGCTTTAACAGCAGCT+CGG 0.580868 2_2:+42889402 None:intergenic
GTCTGAGTGCTGTAATTAGG+AGG 0.596484 2_2:-42889367 Msa0252180:CDS
ATCCCAAACTGTACCCAACA+TGG 0.597262 2_2:-42889026 Msa0252180:three_prime_UTR
TATTACATATCTAACCATGT+TGG 0.600334 2_2:+42889012 None:intergenic
TGAGGCTCTTATTTATGGTG+AGG 0.600518 2_2:-42889671 Msa0252180:CDS
GTCTAATCAAGCACGATGGT+CGG 0.601939 2_2:-42889468 Msa0252180:CDS
ATTTATGGTGAGGCAGAGGG+TGG 0.624370 2_2:-42889661 Msa0252180:CDS
TGACTCTGTTATGGTAGACA+AGG 0.635020 2_2:+42889096 None:intergenic
AATGATAGCTGAGTTTAGAG+TGG 0.636089 2_2:-42888964 Msa0252180:three_prime_UTR
GATTTGCAATGGATTTGACG+TGG 0.641494 2_2:-42889169 Msa0252180:three_prime_UTR
GCTGTTAAAGCATTGGAAAG+TGG 0.642904 2_2:-42889395 Msa0252180:CDS
TGCTGTAATTAGGAGGATCG+AGG 0.654984 2_2:-42889360 Msa0252180:CDS
TTTGAAAGAGAATCATGAGG+AGG 0.658466 2_2:-42888714 Msa0252180:three_prime_UTR
ACCTCTGCTACAGACAATGG+AGG 0.669231 2_2:+42889592 None:intergenic
ACTAGTAACCATGACTGGAG+TGG 0.671598 2_2:-42888764 Msa0252180:three_prime_UTR
GGTTAGATATGTAATACCAG+TGG 0.691584 2_2:-42889005 Msa0252180:three_prime_UTR
TAGACAAGGTCCTAAACATG+CGG 0.702874 2_2:+42889110 None:intergenic
CTGTTTGAAAGAGAATCATG+AGG 0.702982 2_2:-42888717 Msa0252180:three_prime_UTR
GTTAAAGCATTGGAAAGTGG+TGG 0.709004 2_2:-42889392 Msa0252180:CDS
AGATGTCTAATCAAGCACGA+TGG 0.749964 2_2:-42889472 Msa0252180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTACAAATTATAGAAAA+TGG - chr2_2:42889497-42889516 Msa0252180:intron 15.0%
!!! CTTTTACAAATTATAGAAAA+TGG - chr2_2:42889497-42889516 Msa0252180:intron 15.0%
!!! TAGGTAAAATACTTTTACAA+AGG + chr2_2:42889599-42889618 None:intergenic 20.0%
!!! TAGGTAAAATACTTTTACAA+AGG + chr2_2:42889599-42889618 None:intergenic 20.0%
!!! GGATCTTTTGATTTTTTCAT+CGG - chr2_2:42888882-42888901 Msa0252180:three_prime_UTR 25.0%
! TGTTTATTGCAAGAATGTTA+AGG + chr2_2:42888925-42888944 None:intergenic 25.0%
!!! AATCTTATAATTTGCTCAAG+TGG - chr2_2:42888977-42888996 Msa0252180:three_prime_UTR 25.0%
!!! AGTTACTCACTTTTTCTTTT+CGG - chr2_2:42889174-42889193 Msa0252180:three_prime_UTR 25.0%
!!! AATTTGCTGTTCATTTTATC+TGG - chr2_2:42889209-42889228 Msa0252180:intron 25.0%
!!! ATTTGCTGTTCATTTTATCT+GGG - chr2_2:42889210-42889229 Msa0252180:intron 25.0%
!! GAATAATTTTATGTTTCAGC+AGG - chr2_2:42889350-42889369 Msa0252180:CDS 25.0%
! ATTACATATCTAACCATGTT+GGG + chr2_2:42889406-42889425 None:intergenic 25.0%
! TATTACATATCTAACCATGT+TGG + chr2_2:42889407-42889426 None:intergenic 25.0%
! TGTAAAAGAAAACTTATGCA+CGG + chr2_2:42889485-42889504 None:intergenic 25.0%
!! TAGCTTTTGCTAATACATTA+TGG + chr2_2:42889570-42889589 None:intergenic 25.0%
! ATGTATTAGCAAAAGCTATT+AGG - chr2_2:42889572-42889591 Msa0252180:intron 25.0%
!!! GGATCTTTTGATTTTTTCAT+CGG - chr2_2:42888882-42888901 Msa0252180:three_prime_UTR 25.0%
! TGTTTATTGCAAGAATGTTA+AGG + chr2_2:42888925-42888944 None:intergenic 25.0%
!!! AATCTTATAATTTGCTCAAG+TGG - chr2_2:42888977-42888996 Msa0252180:three_prime_UTR 25.0%
!!! AGTTACTCACTTTTTCTTTT+CGG - chr2_2:42889174-42889193 Msa0252180:three_prime_UTR 25.0%
!!! AATTTGCTGTTCATTTTATC+TGG - chr2_2:42889209-42889228 Msa0252180:intron 25.0%
!!! ATTTGCTGTTCATTTTATCT+GGG - chr2_2:42889210-42889229 Msa0252180:intron 25.0%
!! GAATAATTTTATGTTTCAGC+AGG - chr2_2:42889350-42889369 Msa0252180:CDS 25.0%
! ATTACATATCTAACCATGTT+GGG + chr2_2:42889406-42889425 None:intergenic 25.0%
! TATTACATATCTAACCATGT+TGG + chr2_2:42889407-42889426 None:intergenic 25.0%
! TGTAAAAGAAAACTTATGCA+CGG + chr2_2:42889485-42889504 None:intergenic 25.0%
!! TAGCTTTTGCTAATACATTA+TGG + chr2_2:42889570-42889589 None:intergenic 25.0%
! ATGTATTAGCAAAAGCTATT+AGG - chr2_2:42889572-42889591 Msa0252180:intron 25.0%
! AAATTGCCTTAAGTTGCATA+CGG - chr2_2:42889127-42889146 Msa0252180:three_prime_UTR 30.0%
! TCATTTGATTGACTCTGTTA+TGG + chr2_2:42889332-42889351 None:intergenic 30.0%
TGCTAATACATTATGGAACA+TGG + chr2_2:42889563-42889582 None:intergenic 30.0%
! AAATTGCCTTAAGTTGCATA+CGG - chr2_2:42889127-42889146 Msa0252180:three_prime_UTR 30.0%
! TCATTTGATTGACTCTGTTA+TGG + chr2_2:42889332-42889351 None:intergenic 30.0%
TGCTAATACATTATGGAACA+TGG + chr2_2:42889563-42889582 None:intergenic 30.0%
!! TACTGTATGGTACTTTTTGC+TGG - chr2_2:42888713-42888732 Msa0252180:three_prime_UTR 35.0%
! TTGCTCTGGTTTAAATTTGC+TGG - chr2_2:42888861-42888880 Msa0252180:three_prime_UTR 35.0%
! AATTGCCTTAAGTTGCATAC+GGG - chr2_2:42889128-42889147 Msa0252180:three_prime_UTR 35.0%
!! TGTTCATTTTATCTGGGACA+GGG - chr2_2:42889216-42889235 Msa0252180:intron 35.0%
GGTTAGATATGTAATACCAG+TGG - chr2_2:42889411-42889430 Msa0252180:CDS 35.0%
CACAATAACTTCATTTCCAC+TGG + chr2_2:42889430-42889449 None:intergenic 35.0%
AATGATAGCTGAGTTTAGAG+TGG - chr2_2:42889452-42889471 Msa0252180:CDS 35.0%
CTGTTTGAAAGAGAATCATG+AGG - chr2_2:42889699-42889718 Msa0252180:CDS 35.0%
TTTGAAAGAGAATCATGAGG+AGG - chr2_2:42889702-42889721 Msa0252180:exon 35.0%
!! TACTGTATGGTACTTTTTGC+TGG - chr2_2:42888713-42888732 Msa0252180:three_prime_UTR 35.0%
! TTGCTCTGGTTTAAATTTGC+TGG - chr2_2:42888861-42888880 Msa0252180:three_prime_UTR 35.0%
! AATTGCCTTAAGTTGCATAC+GGG - chr2_2:42889128-42889147 Msa0252180:three_prime_UTR 35.0%
!! TGTTCATTTTATCTGGGACA+GGG - chr2_2:42889216-42889235 Msa0252180:intron 35.0%
GGTTAGATATGTAATACCAG+TGG - chr2_2:42889411-42889430 Msa0252180:CDS 35.0%
CACAATAACTTCATTTCCAC+TGG + chr2_2:42889430-42889449 None:intergenic 35.0%
AATGATAGCTGAGTTTAGAG+TGG - chr2_2:42889452-42889471 Msa0252180:CDS 35.0%
CTGTTTGAAAGAGAATCATG+AGG - chr2_2:42889699-42889718 Msa0252180:CDS 35.0%
TTTGAAAGAGAATCATGAGG+AGG - chr2_2:42889702-42889721 Msa0252180:exon 35.0%
! TGAGGCTCTTATTTATGGTG+AGG - chr2_2:42888745-42888764 Msa0252180:three_prime_UTR 40.0%
! TCTTATTTATGGTGAGGCAG+AGG - chr2_2:42888751-42888770 Msa0252180:three_prime_UTR 40.0%
CTTATTTATGGTGAGGCAGA+GGG - chr2_2:42888752-42888771 Msa0252180:three_prime_UTR 40.0%
AGATGTCTAATCAAGCACGA+TGG - chr2_2:42888944-42888963 Msa0252180:three_prime_UTR 40.0%
!! GCTGTTAAAGCATTGGAAAG+TGG - chr2_2:42889021-42889040 Msa0252180:three_prime_UTR 40.0%
!! GTTAAAGCATTGGAAAGTGG+TGG - chr2_2:42889024-42889043 Msa0252180:three_prime_UTR 40.0%
!! CTGTTCATTTTATCTGGGAC+AGG - chr2_2:42889215-42889234 Msa0252180:intron 40.0%
GGGTTATCACAGATTTGCAA+TGG - chr2_2:42889236-42889255 Msa0252180:intron 40.0%
! GATTTGCAATGGATTTGACG+TGG - chr2_2:42889247-42889266 Msa0252180:intron 40.0%
TAGACAAGGTCCTAAACATG+CGG + chr2_2:42889309-42889328 None:intergenic 40.0%
TGACTCTGTTATGGTAGACA+AGG + chr2_2:42889323-42889342 None:intergenic 40.0%
TTCAGCAGGTGACATTATTG+AGG - chr2_2:42889364-42889383 Msa0252180:CDS 40.0%
AACCATGTTGGGTACAGTTT+GGG + chr2_2:42889395-42889414 None:intergenic 40.0%
TAACCATGTTGGGTACAGTT+TGG + chr2_2:42889396-42889415 None:intergenic 40.0%
CTTCTACTAGTAACCATGAC+TGG - chr2_2:42889647-42889666 Msa0252180:CDS 40.0%
CTTTCAAACAGAGCTGCTAT+TGG + chr2_2:42889690-42889709 None:intergenic 40.0%
AAAGAGAATCATGAGGAGGT+TGG - chr2_2:42889706-42889725 Msa0252180:exon 40.0%
! TGAGGCTCTTATTTATGGTG+AGG - chr2_2:42888745-42888764 Msa0252180:three_prime_UTR 40.0%
! TCTTATTTATGGTGAGGCAG+AGG - chr2_2:42888751-42888770 Msa0252180:three_prime_UTR 40.0%
CTTATTTATGGTGAGGCAGA+GGG - chr2_2:42888752-42888771 Msa0252180:three_prime_UTR 40.0%
AGATGTCTAATCAAGCACGA+TGG - chr2_2:42888944-42888963 Msa0252180:three_prime_UTR 40.0%
!! GCTGTTAAAGCATTGGAAAG+TGG - chr2_2:42889021-42889040 Msa0252180:three_prime_UTR 40.0%
!! GTTAAAGCATTGGAAAGTGG+TGG - chr2_2:42889024-42889043 Msa0252180:three_prime_UTR 40.0%
!! CTGTTCATTTTATCTGGGAC+AGG - chr2_2:42889215-42889234 Msa0252180:intron 40.0%
GGGTTATCACAGATTTGCAA+TGG - chr2_2:42889236-42889255 Msa0252180:intron 40.0%
! GATTTGCAATGGATTTGACG+TGG - chr2_2:42889247-42889266 Msa0252180:intron 40.0%
TAGACAAGGTCCTAAACATG+CGG + chr2_2:42889309-42889328 None:intergenic 40.0%
TGACTCTGTTATGGTAGACA+AGG + chr2_2:42889323-42889342 None:intergenic 40.0%
TTCAGCAGGTGACATTATTG+AGG - chr2_2:42889364-42889383 Msa0252180:CDS 40.0%
AACCATGTTGGGTACAGTTT+GGG + chr2_2:42889395-42889414 None:intergenic 40.0%
TAACCATGTTGGGTACAGTT+TGG + chr2_2:42889396-42889415 None:intergenic 40.0%
CTTCTACTAGTAACCATGAC+TGG - chr2_2:42889647-42889666 Msa0252180:CDS 40.0%
CTTTCAAACAGAGCTGCTAT+TGG + chr2_2:42889690-42889709 None:intergenic 40.0%
AAAGAGAATCATGAGGAGGT+TGG - chr2_2:42889706-42889725 Msa0252180:exon 40.0%
! GCAGCTGAGGCTCTTATTTA+TGG - chr2_2:42888740-42888759 Msa0252180:three_prime_UTR 45.0%
AAGACCTCTGCTACAGACAA+TGG + chr2_2:42888830-42888849 None:intergenic 45.0%
TAAACCAGAGCAACCAGTTG+TGG + chr2_2:42888854-42888873 None:intergenic 45.0%
GTCTAATCAAGCACGATGGT+CGG - chr2_2:42888948-42888967 Msa0252180:three_prime_UTR 45.0%
CCAATGCTTTAACAGCAGCT+CGG + chr2_2:42889017-42889036 None:intergenic 45.0%
! GCAGTCTGAGTGCTGTAATT+AGG - chr2_2:42889046-42889065 Msa0252180:three_prime_UTR 45.0%
! GTCTGAGTGCTGTAATTAGG+AGG - chr2_2:42889049-42889068 Msa0252180:three_prime_UTR 45.0%
TGCTGTAATTAGGAGGATCG+AGG - chr2_2:42889056-42889075 Msa0252180:three_prime_UTR 45.0%
GCTAACCCGTATGCAACTTA+AGG + chr2_2:42889136-42889155 None:intergenic 45.0%
! CAATGGATTTGACGTGGAAC+TGG - chr2_2:42889253-42889272 Msa0252180:intron 45.0%
ATCCCAAACTGTACCCAACA+TGG - chr2_2:42889390-42889409 Msa0252180:CDS 45.0%
ACTAGTAACCATGACTGGAG+TGG - chr2_2:42889652-42889671 Msa0252180:CDS 45.0%
! ACAGAGCTGCTATTGGTGTT+GGG + chr2_2:42889683-42889702 None:intergenic 45.0%
AACAGAGCTGCTATTGGTGT+TGG + chr2_2:42889684-42889703 None:intergenic 45.0%
!! AATCATGAGGAGGTTGGTCT+TGG - chr2_2:42889712-42889731 Msa0252180:exon 45.0%
!! ATCATGAGGAGGTTGGTCTT+GGG - chr2_2:42889713-42889732 Msa0252180:exon 45.0%
! GCAGCTGAGGCTCTTATTTA+TGG - chr2_2:42888740-42888759 Msa0252180:three_prime_UTR 45.0%
AAGACCTCTGCTACAGACAA+TGG + chr2_2:42888830-42888849 None:intergenic 45.0%
TAAACCAGAGCAACCAGTTG+TGG + chr2_2:42888854-42888873 None:intergenic 45.0%
GTCTAATCAAGCACGATGGT+CGG - chr2_2:42888948-42888967 Msa0252180:three_prime_UTR 45.0%
CCAATGCTTTAACAGCAGCT+CGG + chr2_2:42889017-42889036 None:intergenic 45.0%
! GCAGTCTGAGTGCTGTAATT+AGG - chr2_2:42889046-42889065 Msa0252180:three_prime_UTR 45.0%
! GTCTGAGTGCTGTAATTAGG+AGG - chr2_2:42889049-42889068 Msa0252180:three_prime_UTR 45.0%
TGCTGTAATTAGGAGGATCG+AGG - chr2_2:42889056-42889075 Msa0252180:three_prime_UTR 45.0%
GCTAACCCGTATGCAACTTA+AGG + chr2_2:42889136-42889155 None:intergenic 45.0%
! CAATGGATTTGACGTGGAAC+TGG - chr2_2:42889253-42889272 Msa0252180:intron 45.0%
ATCCCAAACTGTACCCAACA+TGG - chr2_2:42889390-42889409 Msa0252180:CDS 45.0%
ACTAGTAACCATGACTGGAG+TGG - chr2_2:42889652-42889671 Msa0252180:CDS 45.0%
! ACAGAGCTGCTATTGGTGTT+GGG + chr2_2:42889683-42889702 None:intergenic 45.0%
AACAGAGCTGCTATTGGTGT+TGG + chr2_2:42889684-42889703 None:intergenic 45.0%
!! ATAATAAATAAAGAATATAT+AGG + chr2_2:42889618-42889637 None:intergenic 5.0%
!!! TTCTTTATTTATTATTATTT+TGG - chr2_2:42889623-42889642 Msa0252180:CDS 5.0%
!! ATAATAAATAAAGAATATAT+AGG + chr2_2:42889618-42889637 None:intergenic 5.0%
!!! TTCTTTATTTATTATTATTT+TGG - chr2_2:42889623-42889642 Msa0252180:CDS 5.0%
! TTTTGCTGGCATTGCAGCTG+AGG - chr2_2:42888727-42888746 Msa0252180:three_prime_UTR 50.0%
ATTTATGGTGAGGCAGAGGG+TGG - chr2_2:42888755-42888774 Msa0252180:three_prime_UTR 50.0%
ACCTCTGCTACAGACAATGG+AGG + chr2_2:42888827-42888846 None:intergenic 50.0%
AGCAGAGGTCTTTCCACAAC+TGG - chr2_2:42888838-42888857 Msa0252180:three_prime_UTR 50.0%
CTTTCCACAACTGGTTGCTC+TGG - chr2_2:42888847-42888866 Msa0252180:three_prime_UTR 50.0%
CCGAGCTGCTGTTAAAGCAT+TGG - chr2_2:42889014-42889033 Msa0252180:three_prime_UTR 50.0%
CTTGCAGATGCCGCATGTTT+AGG - chr2_2:42889296-42889315 Msa0252180:three_prime_UTR 50.0%
!! CAGAGCTGCTATTGGTGTTG+GGG + chr2_2:42889682-42889701 None:intergenic 50.0%
!! TCATGAGGAGGTTGGTCTTG+GGG - chr2_2:42889714-42889733 Msa0252180:exon 50.0%
! TTTTGCTGGCATTGCAGCTG+AGG - chr2_2:42888727-42888746 Msa0252180:three_prime_UTR 50.0%
ATTTATGGTGAGGCAGAGGG+TGG - chr2_2:42888755-42888774 Msa0252180:three_prime_UTR 50.0%
ACCTCTGCTACAGACAATGG+AGG + chr2_2:42888827-42888846 None:intergenic 50.0%
AGCAGAGGTCTTTCCACAAC+TGG - chr2_2:42888838-42888857 Msa0252180:three_prime_UTR 50.0%
CTTTCCACAACTGGTTGCTC+TGG - chr2_2:42888847-42888866 Msa0252180:three_prime_UTR 50.0%
CCGAGCTGCTGTTAAAGCAT+TGG - chr2_2:42889014-42889033 Msa0252180:three_prime_UTR 50.0%
CTTGCAGATGCCGCATGTTT+AGG - chr2_2:42889296-42889315 Msa0252180:three_prime_UTR 50.0%
!! CAGAGCTGCTATTGGTGTTG+GGG + chr2_2:42889682-42889701 None:intergenic 50.0%
GCCTCCATTGTCTGTAGCAG+AGG - chr2_2:42888823-42888842 Msa0252180:three_prime_UTR 55.0%
GCCTCCATTGTCTGTAGCAG+AGG - chr2_2:42888823-42888842 Msa0252180:three_prime_UTR 55.0%
GGGGTTCACCACTCCAGTCA+TGG + chr2_2:42889663-42889682 None:intergenic 60.0%
GGGGTTCACCACTCCAGTCA+TGG + chr2_2:42889663-42889682 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 42888704 42889734 42888704 ID=Msa0252180;Name=Msa0252180
chr2_2 mRNA 42888704 42889734 42888704 ID=Msa0252180-mRNA-1;Parent=Msa0252180;Name=Msa0252180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=15|1|1|1|0.5|0.66|3|546|93
chr2_2 exon 42888704 42889201 42888704 ID=Msa0252180-mRNA-1:exon:13367;Parent=Msa0252180-mRNA-1
chr2_2 exon 42889289 42889492 42889289 ID=Msa0252180-mRNA-1:exon:13366;Parent=Msa0252180-mRNA-1
chr2_2 exon 42889594 42889734 42889594 ID=Msa0252180-mRNA-1:exon:13365;Parent=Msa0252180-mRNA-1
chr2_2 five_prime_UTR 42889720 42889734 42889720 ID=Msa0252180-mRNA-1:five_prime_utr;Parent=Msa0252180-mRNA-1
chr2_2 CDS 42889594 42889719 42889594 ID=Msa0252180-mRNA-1:cds;Parent=Msa0252180-mRNA-1
chr2_2 CDS 42889337 42889492 42889337 ID=Msa0252180-mRNA-1:cds;Parent=Msa0252180-mRNA-1
chr2_2 three_prime_UTR 42889289 42889336 42889289 ID=Msa0252180-mRNA-1:three_prime_utr;Parent=Msa0252180-mRNA-1
chr2_2 three_prime_UTR 42888704 42889201 42888704 ID=Msa0252180-mRNA-1:three_prime_utr;Parent=Msa0252180-mRNA-1
Gene Sequence

>Msa0252180

ATGGTACTTTTTGCTGGCATTGCAGCTGAGGCTCTTATTTATGGTGAGGCAGAGGGTGGAGAAAATGATGAAAATCTATTTAGAAGCGTCTGTCTTCTTCTTGAGCCTCCATTGTCTGTAGCAGAGATGTCTAATCAAGCACGATGGTCGGTTTTGCAATCTTATAATTTGCTCAAGTGGCATAAAGCTGCACACCGAGCTGCTGTTAAAGCATTGGAAAGTGGTGGCAGTCTGAGTGCTGTAATTAGGAGGATCGAGGAGACATTGTATTCTGAAAAATGA

Protein sequence

>Msa0252180

MVLFAGIAAEALIYGEAEGGENDENLFRSVCLLLEPPLSVAEMSNQARWSVLQSYNLLKWHKAAHRAAVKALESGGSLSAVIRRIEETLYSEK*