Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169370 | XP_003590733.2 | 98.333 | 120 | 2 | 0 | 1 | 120 | 1 | 120 | 1.57e-80 | 242 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169370 | G7I2P6 | 98.333 | 120 | 2 | 0 | 1 | 120 | 1 | 120 | 7.49e-81 | 242 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044330 | Msa0169370 | 0.800199 | 1.612226e-48 | -8.615850e-47 |
| Msa0079180 | Msa0169370 | 0.829345 | 5.423349e-55 | -8.615850e-47 |
| Msa0169370 | Msa0388950 | 0.821793 | 3.343317e-53 | -8.615850e-47 |
| Msa0169370 | Msa0547320 | 0.800741 | 1.249895e-48 | -8.615850e-47 |
| Msa0169370 | Msa0849030 | 0.806876 | 6.649676e-50 | -8.615850e-47 |
| Msa0169370 | Msa0932560 | 0.821915 | 3.132087e-53 | -8.615850e-47 |
| Msa0169370 | Msa1313140 | 0.822153 | 2.758040e-53 | -8.615850e-47 |
| Msa0169370 | Msa1423870 | 0.822306 | 2.541969e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169370 | MtrunA17_Chr1g0186081 | 98.333 | 120 | 2 | 0 | 1 | 120 | 1 | 120 | 1.44e-84 | 242 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0169370 | AT1G48200.1 | 46.610 | 118 | 59 | 3 | 5 | 120 | 3 | 118 | 8.43e-25 | 91.3 |
Find 34 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGATCTCAGATCATTATTT+TGG | 0.166457 | 1_4:-52599276 | None:intergenic |
| AGTCTATTAGGAACACTCTT+TGG | 0.246535 | 1_4:+52596984 | Msa0169370:CDS |
| GTTTCGTTATTCAGTGAAAT+TGG | 0.261172 | 1_4:+52596485 | Msa0169370:five_prime_UTR |
| CCTAATAGACTTATTAGTTT+TGG | 0.276091 | 1_4:-52596972 | None:intergenic |
| CCAAAACTAATAAGTCTATT+AGG | 0.317343 | 1_4:+52596972 | Msa0169370:CDS |
| GCAAGGCTCTATGAAATTTA+CGG | 0.323891 | 1_4:+52597064 | Msa0169370:CDS |
| GTCTATTAGGAACACTCTTT+GGG | 0.365365 | 1_4:+52596985 | Msa0169370:CDS |
| TAGAGCCTTGCCAAGGGAAC+TGG | 0.374122 | 1_4:-52597052 | None:intergenic |
| CACAGTGATCAATGTTGGTT+TGG | 0.374270 | 1_4:+52596865 | Msa0169370:CDS |
| GAAAACTGACTTACAAGAAA+TGG | 0.387735 | 1_4:-52596566 | None:intergenic |
| ATAATGTAATTGTTTGCATA+AGG | 0.396584 | 1_4:+52599454 | Msa0169370:three_prime_UTR |
| TTAGGAACACTCTTTGGGAT+TGG | 0.416748 | 1_4:+52596990 | Msa0169370:CDS |
| CAAGAAATGGCGGCAGTCGC+TGG | 0.418221 | 1_4:-52596553 | None:intergenic |
| TGCCGAAGCAGCGTCTGATT+CGG | 0.436762 | 1_4:+52597027 | Msa0169370:CDS |
| AGCCGAATCAGACGCTGCTT+CGG | 0.457423 | 1_4:-52597029 | None:intergenic |
| CTGAGATCTGAATTGCTGTC+AGG | 0.465319 | 1_4:+52599289 | Msa0169370:exon |
| TGATTCGGCTCCAGTTCCCT+TGG | 0.500860 | 1_4:+52597042 | Msa0169370:CDS |
| CGGCTCCAGTTCCCTTGGCA+AGG | 0.507167 | 1_4:+52597047 | Msa0169370:CDS |
| GGATTAGCATCTTTCCTCAC+AGG | 0.533126 | 1_4:-52599242 | None:intergenic |
| TGAAGCTTTAGAAGCTGAGA+AGG | 0.533991 | 1_4:+52596940 | Msa0169370:CDS |
| TGGCAAGTAGATGTAGAACT+TGG | 0.534881 | 1_4:+52599402 | Msa0169370:three_prime_UTR |
| CAAGTAGATGTAGAACTTGG+AGG | 0.541262 | 1_4:+52599405 | Msa0169370:three_prime_UTR |
| CCAGGTGCAGATTGTTGAGG+AGG | 0.553259 | 1_4:-52597097 | None:intergenic |
| ACAGTGATCAATGTTGGTTT+GGG | 0.553382 | 1_4:+52596866 | Msa0169370:CDS |
| AGTAACACAGTGATCAATGT+TGG | 0.560249 | 1_4:+52596860 | Msa0169370:CDS |
| CCTCCTCAACAATCTGCACC+TGG | 0.565711 | 1_4:+52597097 | Msa0169370:CDS |
| AGGAAAGATGCTAATCCAGC+TGG | 0.568309 | 1_4:+52599248 | Msa0169370:CDS |
| CAGGTGCAGATTGTTGAGGA+GGG | 0.595816 | 1_4:-52597096 | None:intergenic |
| TGTTGCAGAGATAGAGACGA+AGG | 0.602128 | 1_4:-52596518 | None:intergenic |
| TTACCAGGTGCAGATTGTTG+AGG | 0.618119 | 1_4:-52597100 | None:intergenic |
| AATTTCATAGAGCCTTGCCA+AGG | 0.629006 | 1_4:-52597059 | None:intergenic |
| AACTGACTTACAAGAAATGG+CGG | 0.646844 | 1_4:-52596563 | None:intergenic |
| ATTTCATAGAGCCTTGCCAA+GGG | 0.656909 | 1_4:-52597058 | None:intergenic |
| AGGTGCAGATTGTTGAGGAG+GGG | 0.665795 | 1_4:-52597095 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCATATTATTTTTTCAT+TGG | + | chr1_4:52599382-52599401 | Msa0169370:three_prime_UTR | 10.0% |
| !! | GTATAATAAAATATCTAACT+TGG | - | chr1_4:52599117-52599136 | None:intergenic | 15.0% |
| !! | AATTAGGGTTATGAAAAATT+AGG | + | chr1_4:52596673-52596692 | Msa0169370:intron | 20.0% |
| !! | CAATGATAGAAAAAACAAAA+GGG | - | chr1_4:52596749-52596768 | None:intergenic | 20.0% |
| !!! | CTTTTGTTTTTTCTATCATT+GGG | + | chr1_4:52596748-52596767 | Msa0169370:intron | 20.0% |
| !! | AATGATTGTATGCATTTATA+TGG | + | chr1_4:52597187-52597206 | Msa0169370:intron | 20.0% |
| !! | CCAAAATATTAATTTCATCA+GGG | - | chr1_4:52597851-52597870 | None:intergenic | 20.0% |
| !! | ACCAAAATATTAATTTCATC+AGG | - | chr1_4:52597852-52597871 | None:intergenic | 20.0% |
| !!! | ATGTATGTTGATTGTTATAA+AGG | + | chr1_4:52597900-52597919 | Msa0169370:intron | 20.0% |
| !!! | GATATTTTATTATACCAATC+AGG | + | chr1_4:52599122-52599141 | Msa0169370:intron | 20.0% |
| !! | ATAATGTAATTGTTTGCATA+AGG | + | chr1_4:52599454-52599473 | Msa0169370:three_prime_UTR | 20.0% |
| ! | TGTCAAAGCATGAAAAAATT+AGG | + | chr1_4:52596657-52596676 | Msa0169370:intron | 25.0% |
| ! | GTCAAAGCATGAAAAAATTA+GGG | + | chr1_4:52596658-52596677 | Msa0169370:intron | 25.0% |
| ! | CCAATGATAGAAAAAACAAA+AGG | - | chr1_4:52596750-52596769 | None:intergenic | 25.0% |
| !!! | CCTTTTGTTTTTTCTATCAT+TGG | + | chr1_4:52596747-52596766 | Msa0169370:intron | 25.0% |
| !!! | CCTAATAGACTTATTAGTTT+TGG | - | chr1_4:52596975-52596994 | None:intergenic | 25.0% |
| ! | CCAAAACTAATAAGTCTATT+AGG | + | chr1_4:52596972-52596991 | Msa0169370:CDS | 25.0% |
| ! | AGAGATAAAAACAAATTACC+AGG | - | chr1_4:52597118-52597137 | None:intergenic | 25.0% |
| ! | TATCATTAACCAATTCAATG+AGG | + | chr1_4:52597148-52597167 | Msa0169370:intron | 25.0% |
| !!! | AGGTTTCTACAATCATTTTT+CGG | + | chr1_4:52597267-52597286 | Msa0169370:intron | 25.0% |
| ! | AATTTGATGAATTGTTTGAG+AGG | + | chr1_4:52597383-52597402 | Msa0169370:intron | 25.0% |
| ! | ATTTGATGAATTGTTTGAGA+GGG | + | chr1_4:52597384-52597403 | Msa0169370:intron | 25.0% |
| ! | AAAAGAAAACCTGAAAACAA+TGG | + | chr1_4:52597800-52597819 | Msa0169370:intron | 25.0% |
| !! | CCCTGATGAAATTAATATTT+TGG | + | chr1_4:52597848-52597867 | Msa0169370:intron | 25.0% |
| ! | TGATTGTTATAAAGGTCATT+TGG | + | chr1_4:52597908-52597927 | Msa0169370:intron | 25.0% |
| ! | TTATAAAGGTCATTTGGATA+AGG | + | chr1_4:52597914-52597933 | Msa0169370:intron | 25.0% |
| !! | TTTCTCTTACAATTAGCTTA+CGG | - | chr1_4:52598206-52598225 | None:intergenic | 25.0% |
| !!! | TTATCGTTTAGCTTTTCTAT+GGG | - | chr1_4:52598265-52598284 | None:intergenic | 25.0% |
| !!! | AGTTTGAAAAGCTTGTTTTT+TGG | + | chr1_4:52598385-52598404 | Msa0169370:intron | 25.0% |
| !! | GGTAAAATTTGAGAACTTTT+GGG | + | chr1_4:52598614-52598633 | Msa0169370:intron | 25.0% |
| ! | ATATTTGAGTCTATTGTTCA+TGG | + | chr1_4:52598682-52598701 | Msa0169370:intron | 25.0% |
| ! | TATTTGAGTCTATTGTTCAT+GGG | + | chr1_4:52598683-52598702 | Msa0169370:intron | 25.0% |
| ! | ATTGTTCATGGGTATAAATT+AGG | + | chr1_4:52598694-52598713 | Msa0169370:intron | 25.0% |
| ! | AAAAATTGAATTACATCTGG+AGG | - | chr1_4:52598815-52598834 | None:intergenic | 25.0% |
| !! | TCCAGATGTAATTCAATTTT+TGG | + | chr1_4:52598814-52598833 | Msa0169370:intron | 25.0% |
| !! | CCAGATGTAATTCAATTTTT+GGG | + | chr1_4:52598815-52598834 | Msa0169370:intron | 25.0% |
| ! | TAATATTTGGTTACACGTTT+CGG | - | chr1_4:52598841-52598860 | None:intergenic | 25.0% |
| ! | CCATGTAAAAGAAATTTACA+CGG | - | chr1_4:52599054-52599073 | None:intergenic | 25.0% |
| !!! | ATAAAGTATTTTCTGAGAGT+AGG | + | chr1_4:52599345-52599364 | Msa0169370:three_prime_UTR | 25.0% |
| GTTTCGTTATTCAGTGAAAT+TGG | + | chr1_4:52596485-52596504 | Msa0169370:five_prime_UTR | 30.0% | |
| ! | GAAAACTGACTTACAAGAAA+TGG | - | chr1_4:52596569-52596588 | None:intergenic | 30.0% |
| ! | TTTTCATGCTTTGACATGAA+CGG | - | chr1_4:52596653-52596672 | None:intergenic | 30.0% |
| !! | TTTCTATCATTGGGTTGAAA+TGG | + | chr1_4:52596757-52596776 | Msa0169370:intron | 30.0% |
| !! | TTCTATCATTGGGTTGAAAT+GGG | + | chr1_4:52596758-52596777 | Msa0169370:intron | 30.0% |
| TTTCTCTCCTGAAATCAAAA+AGG | - | chr1_4:52596789-52596808 | None:intergenic | 30.0% | |
| GATTTCAGGAGAGAAAAAAA+TGG | + | chr1_4:52596793-52596812 | Msa0169370:intron | 30.0% | |
| ATAACTCACAGGAAACTATA+TGG | - | chr1_4:52597295-52597314 | None:intergenic | 30.0% | |
| TCACAGGAAACTATATACAA+AGG | - | chr1_4:52597319-52597338 | None:intergenic | 30.0% | |
| CTATAACACTTGTAGCATAA+CGG | - | chr1_4:52597459-52597478 | None:intergenic | 30.0% | |
| ATAACAGTGACAACAAAACT+AGG | - | chr1_4:52597586-52597605 | None:intergenic | 30.0% | |
| !!! | TAGTTTTGTTGTCACTGTTA+TGG | + | chr1_4:52597585-52597604 | Msa0169370:intron | 30.0% |
| CACTGTTATGGTAATTATTC+AGG | + | chr1_4:52597597-52597616 | Msa0169370:intron | 30.0% | |
| ! | TCTGTTCAGTTTTTCCAAAT+TGG | - | chr1_4:52597651-52597670 | None:intergenic | 30.0% |
| GATATTACAGTTGAATGACT+AGG | + | chr1_4:52597691-52597710 | Msa0169370:intron | 30.0% | |
| !!! | TGTTTTCAGGTTTTCTTTTC+TGG | - | chr1_4:52597799-52597818 | None:intergenic | 30.0% |
| TAACAATCAACATACATGCT+GGG | - | chr1_4:52597897-52597916 | None:intergenic | 30.0% | |
| ATAACAATCAACATACATGC+TGG | - | chr1_4:52597898-52597917 | None:intergenic | 30.0% | |
| ! | ATGACAAGATACTTTGAGAA+AGG | + | chr1_4:52598105-52598124 | Msa0169370:intron | 30.0% |
| !!! | TATCGTTTAGCTTTTCTATG+GGG | - | chr1_4:52598264-52598283 | None:intergenic | 30.0% |
| !!! | GTTATCGTTTAGCTTTTCTA+TGG | - | chr1_4:52598266-52598285 | None:intergenic | 30.0% |
| ! | ATTGAGTATTTCTACTGTTG+TGG | + | chr1_4:52598335-52598354 | Msa0169370:intron | 30.0% |
| ATGCCTTAAAATCTCATCAA+AGG | + | chr1_4:52598360-52598379 | Msa0169370:intron | 30.0% | |
| TGCCTTAAAATCTCATCAAA+GGG | + | chr1_4:52598361-52598380 | Msa0169370:intron | 30.0% | |
| ! | TTCCCTTTGATGAGATTTTA+AGG | - | chr1_4:52598366-52598385 | None:intergenic | 30.0% |
| TGAGAAAAACAGCTTGAATA+AGG | - | chr1_4:52598552-52598571 | None:intergenic | 30.0% | |
| ! | GGGTAAAATTTGAGAACTTT+TGG | + | chr1_4:52598613-52598632 | Msa0169370:intron | 30.0% |
| !!! | AACTTTTGGGTTAGATTCTA+GGG | + | chr1_4:52598627-52598646 | Msa0169370:intron | 30.0% |
| TGTAAGAAACTCATTGATAG+TGG | + | chr1_4:52598771-52598790 | Msa0169370:intron | 30.0% | |
| CCCAAAAATTGAATTACATC+TGG | - | chr1_4:52598818-52598837 | None:intergenic | 30.0% | |
| GAGGAACAAACACTAATATT+TGG | - | chr1_4:52598854-52598873 | None:intergenic | 30.0% | |
| AGAACAAAGATAATGAGAAG+AGG | - | chr1_4:52598873-52598892 | None:intergenic | 30.0% | |
| TTTGTTCTTTGCTTTGATTG+TGG | + | chr1_4:52598885-52598904 | Msa0169370:intron | 30.0% | |
| !! | TGTGGATTTGTTATACACAT+AGG | + | chr1_4:52598903-52598922 | Msa0169370:intron | 30.0% |
| !!! | TTCTGGTTAGTTTTGACAAA+GGG | + | chr1_4:52599009-52599028 | Msa0169370:intron | 30.0% |
| ! | CCGTGTAAATTTCTTTTACA+TGG | + | chr1_4:52599051-52599070 | Msa0169370:intron | 30.0% |
| TTTACTACTGCTTTACAAGA+TGG | - | chr1_4:52599077-52599096 | None:intergenic | 30.0% | |
| ATCTTGTAAAGCAGTAGTAA+AGG | + | chr1_4:52599076-52599095 | Msa0169370:intron | 30.0% | |
| ATTATACCAATCAGGTGAAT+TGG | + | chr1_4:52599130-52599149 | Msa0169370:intron | 30.0% | |
| ATAGGTAAGAAATCATGACA+TGG | - | chr1_4:52599191-52599210 | None:intergenic | 30.0% | |
| ACCTATAATTACTTCTGTTG+TGG | + | chr1_4:52599205-52599224 | Msa0169370:intron | 30.0% | |
| ACCACAACAGAAGTAATTAT+AGG | - | chr1_4:52599209-52599228 | None:intergenic | 30.0% | |
| ! | CAGATCTCAGATCATTATTT+TGG | - | chr1_4:52599279-52599298 | None:intergenic | 30.0% |
| ! | AACTGACTTACAAGAAATGG+CGG | - | chr1_4:52596566-52596585 | None:intergenic | 35.0% |
| ! | GTTGAGTTTGAAGTGATGTT+AGG | - | chr1_4:52596594-52596613 | None:intergenic | 35.0% |
| AGTAACACAGTGATCAATGT+TGG | + | chr1_4:52596860-52596879 | Msa0169370:CDS | 35.0% | |
| !! | ACAGTGATCAATGTTGGTTT+GGG | + | chr1_4:52596866-52596885 | Msa0169370:CDS | 35.0% |
| AGTCTATTAGGAACACTCTT+TGG | + | chr1_4:52596984-52597003 | Msa0169370:CDS | 35.0% | |
| GTCTATTAGGAACACTCTTT+GGG | + | chr1_4:52596985-52597004 | Msa0169370:CDS | 35.0% | |
| GCAAGGCTCTATGAAATTTA+CGG | + | chr1_4:52597064-52597083 | Msa0169370:CDS | 35.0% | |
| TAACCAATTCAATGAGGCAA+TGG | + | chr1_4:52597154-52597173 | Msa0169370:intron | 35.0% | |
| ! | TATACAAAGGCATAACTCAC+AGG | - | chr1_4:52597306-52597325 | None:intergenic | 35.0% |
| CACATACTCATCAAACACAA+AGG | - | chr1_4:52597348-52597367 | None:intergenic | 35.0% | |
| CCACTATTTGACAACATTGA+GGG | + | chr1_4:52597558-52597577 | Msa0169370:intron | 35.0% | |
| TAGGATATTACTGTAACACG+AGG | + | chr1_4:52597710-52597729 | Msa0169370:intron | 35.0% | |
| !! | TTTCTTTTCTGGCGAAATCT+TGG | - | chr1_4:52597788-52597807 | None:intergenic | 35.0% |
| AGCTGAGATAAAAACGTGAT+GGG | + | chr1_4:52597995-52598014 | Msa0169370:intron | 35.0% | |
| TCACTTCAAGAGTTTAGAAG+AGG | - | chr1_4:52598229-52598248 | None:intergenic | 35.0% | |
| !!! | ATCGTTTAGCTTTTCTATGG+GGG | - | chr1_4:52598263-52598282 | None:intergenic | 35.0% |
| AAACAGCTTGAATAAGGTTC+AGG | - | chr1_4:52598546-52598565 | None:intergenic | 35.0% | |
| !! | TCTCATTTGTTGTGCAATCT+CGG | + | chr1_4:52598567-52598586 | Msa0169370:intron | 35.0% |
| ! | ACCAAAAGAGGACACTTTTA+GGG | + | chr1_4:52598593-52598612 | Msa0169370:intron | 35.0% |
| !!! | GAACTTTTGGGTTAGATTCT+AGG | + | chr1_4:52598626-52598645 | Msa0169370:intron | 35.0% |
| TTGTTATACACATAGGTTGC+TGG | + | chr1_4:52598910-52598929 | Msa0169370:intron | 35.0% | |
| TGCTTGCATTGTTTGTGTAT+TGG | + | chr1_4:52598957-52598976 | Msa0169370:intron | 35.0% | |
| AGATGAGGAGCAAATAACAA+TGG | - | chr1_4:52598986-52599005 | None:intergenic | 35.0% | |
| AACTAACCAGAACAAAGATG+AGG | - | chr1_4:52599001-52599020 | None:intergenic | 35.0% | |
| !!! | GTTCTGGTTAGTTTTGACAA+AGG | + | chr1_4:52599008-52599027 | Msa0169370:intron | 35.0% |
| CACGGTAGTTGTTGTAAATT+TGG | - | chr1_4:52599036-52599055 | None:intergenic | 35.0% | |
| CAGTAGTAAAGGTTTGATGT+TGG | + | chr1_4:52599087-52599106 | Msa0169370:intron | 35.0% | |
| !!! | TCTCAGATCATTATTTTGGC+TGG | - | chr1_4:52599275-52599294 | None:intergenic | 35.0% |
| !!! | GGTCACTCCTTTTTGATTTC+AGG | + | chr1_4:52596779-52596798 | Msa0169370:intron | 40.0% |
| ! | CACAGTGATCAATGTTGGTT+TGG | + | chr1_4:52596865-52596884 | Msa0169370:CDS | 40.0% |
| !!! | GGTGCTGTTTTTGCAATTCT+GGG | + | chr1_4:52596887-52596906 | Msa0169370:CDS | 40.0% |
| !! | TGAAGCTTTAGAAGCTGAGA+AGG | + | chr1_4:52596940-52596959 | Msa0169370:CDS | 40.0% |
| !! | TTAGGAACACTCTTTGGGAT+TGG | + | chr1_4:52596990-52597009 | Msa0169370:CDS | 40.0% |
| ATTTCATAGAGCCTTGCCAA+GGG | - | chr1_4:52597061-52597080 | None:intergenic | 40.0% | |
| AATTTCATAGAGCCTTGCCA+AGG | - | chr1_4:52597062-52597081 | None:intergenic | 40.0% | |
| CTTCCATTGCCTCATTGAAT+TGG | - | chr1_4:52597160-52597179 | None:intergenic | 40.0% | |
| ATTCAATGAGGCAATGGAAG+TGG | + | chr1_4:52597160-52597179 | Msa0169370:intron | 40.0% | |
| ! | TCATTGCTAGCTTGCATGAT+AGG | + | chr1_4:52597247-52597266 | Msa0169370:intron | 40.0% |
| ! | AACACAAAGGCATAACTCAC+AGG | - | chr1_4:52597335-52597354 | None:intergenic | 40.0% |
| AGTTCGCAATTGACAACACT+AGG | - | chr1_4:52597411-52597430 | None:intergenic | 40.0% | |
| TTGCGAACTGCAGAAAATAG+CGG | + | chr1_4:52597422-52597441 | Msa0169370:intron | 40.0% | |
| GCCACTATTTGACAACATTG+AGG | + | chr1_4:52597557-52597576 | Msa0169370:intron | 40.0% | |
| CCCTCAATGTTGTCAAATAG+TGG | - | chr1_4:52597561-52597580 | None:intergenic | 40.0% | |
| CTTAGCCCAAAATCAGGTTA+GGG | + | chr1_4:52597823-52597842 | Msa0169370:intron | 40.0% | |
| CTGGGAGCTTAGATATCATA+TGG | - | chr1_4:52597879-52597898 | None:intergenic | 40.0% | |
| ! | CTACACAACAACCGATTCAT+TGG | + | chr1_4:52597964-52597983 | Msa0169370:intron | 40.0% |
| GCTGGAAGTTTCCAATGAAT+CGG | - | chr1_4:52597978-52597997 | None:intergenic | 40.0% | |
| ! | CATCACGTTTTTATCTCAGC+TGG | - | chr1_4:52597996-52598015 | None:intergenic | 40.0% |
| CAGCTGAGATAAAAACGTGA+TGG | + | chr1_4:52597994-52598013 | Msa0169370:intron | 40.0% | |
| GCTGAGATAAAAACGTGATG+GGG | + | chr1_4:52597996-52598015 | Msa0169370:intron | 40.0% | |
| CTGAGATAAAAACGTGATGG+GGG | + | chr1_4:52597997-52598016 | Msa0169370:intron | 40.0% | |
| ! | TAAAAACGTGATGGGGGAAA+TGG | + | chr1_4:52598003-52598022 | Msa0169370:intron | 40.0% |
| ! | AAAAACGTGATGGGGGAAAT+GGG | + | chr1_4:52598004-52598023 | Msa0169370:intron | 40.0% |
| TGAATAAGGTTCAGGATCTG+AGG | - | chr1_4:52598538-52598557 | None:intergenic | 40.0% | |
| !! | CTCATTTGTTGTGCAATCTC+GGG | + | chr1_4:52598568-52598587 | Msa0169370:intron | 40.0% |
| ! | GACCAAAAGAGGACACTTTT+AGG | + | chr1_4:52598592-52598611 | Msa0169370:intron | 40.0% |
| !!! | ACCCTAAAAGTGTCCTCTTT+TGG | - | chr1_4:52598597-52598616 | None:intergenic | 40.0% |
| !! | TTTGGGTTAGATTCTAGGGT+TGG | + | chr1_4:52598631-52598650 | Msa0169370:intron | 40.0% |
| TTTGCTCCTCATCTTTGTTC+TGG | + | chr1_4:52598992-52599011 | Msa0169370:intron | 40.0% | |
| GATTCACCAATTCACCTGAT+TGG | - | chr1_4:52599139-52599158 | None:intergenic | 40.0% | |
| ! | TCCACATTTTCGATGCACAA+TGG | + | chr1_4:52599157-52599176 | Msa0169370:intron | 40.0% |
| TCCATTGTGCATCGAAAATG+TGG | - | chr1_4:52599161-52599180 | None:intergenic | 40.0% | |
| ! | ACTTCTGTTGTGGTTTTTCC+AGG | + | chr1_4:52599215-52599234 | Msa0169370:intron | 40.0% |
| ! | TAGAAGCTTTTAGCGTTGCA+AGG | + | chr1_4:52599316-52599335 | Msa0169370:three_prime_UTR | 40.0% |
| TGGCAAGTAGATGTAGAACT+TGG | + | chr1_4:52599402-52599421 | Msa0169370:three_prime_UTR | 40.0% | |
| CAAGTAGATGTAGAACTTGG+AGG | + | chr1_4:52599405-52599424 | Msa0169370:three_prime_UTR | 40.0% | |
| TGTTGCAGAGATAGAGACGA+AGG | - | chr1_4:52596521-52596540 | None:intergenic | 45.0% | |
| !!! | GGGTGCTGTTTTTGCAATTC+TGG | + | chr1_4:52596886-52596905 | Msa0169370:CDS | 45.0% |
| TTACCAGGTGCAGATTGTTG+AGG | - | chr1_4:52597103-52597122 | None:intergenic | 45.0% | |
| TATCTTGTCTCAGTGTCACG+AGG | + | chr1_4:52597624-52597643 | Msa0169370:intron | 45.0% | |
| ! | TGGGCTAAGCCATTGTTTTC+AGG | - | chr1_4:52597812-52597831 | None:intergenic | 45.0% |
| CAATGGCTTAGCCCAAAATC+AGG | + | chr1_4:52597817-52597836 | Msa0169370:intron | 45.0% | |
| GCTTAGCCCAAAATCAGGTT+AGG | + | chr1_4:52597822-52597841 | Msa0169370:intron | 45.0% | |
| TGGAGGTAAACCAGTAGTTG+AGG | + | chr1_4:52598049-52598068 | Msa0169370:intron | 45.0% | |
| ACATTTCGCTCCTCAACTAC+TGG | - | chr1_4:52598062-52598081 | None:intergenic | 45.0% | |
| !! | TCTAGGGTTGGTAAACACCT+TGG | + | chr1_4:52598643-52598662 | Msa0169370:intron | 45.0% |
| ! | GTTGGTAAACACCTTGGACT+TGG | + | chr1_4:52598649-52598668 | Msa0169370:intron | 45.0% |
| ! | TTTTTCGCTCTCCAAGTCCA+AGG | - | chr1_4:52598663-52598682 | None:intergenic | 45.0% |
| ATTACATCTGGAGGAGAGAG+CGG | - | chr1_4:52598806-52598825 | None:intergenic | 45.0% | |
| ! | TTTTTCCAGGAGATCCTGTG+AGG | + | chr1_4:52599228-52599247 | Msa0169370:intron | 45.0% |
| ! | GGATTAGCATCTTTCCTCAC+AGG | - | chr1_4:52599245-52599264 | None:intergenic | 45.0% |
| AGGAAAGATGCTAATCCAGC+TGG | + | chr1_4:52599248-52599267 | Msa0169370:CDS | 45.0% | |
| !!! | ATTATTTTGGCTGGACCAGC+TGG | - | chr1_4:52599266-52599285 | None:intergenic | 45.0% |
| CTGAGATCTGAATTGCTGTC+AGG | + | chr1_4:52599289-52599308 | Msa0169370:exon | 45.0% | |
| AGGTGCAGATTGTTGAGGAG+GGG | - | chr1_4:52597098-52597117 | None:intergenic | 50.0% | |
| CAGGTGCAGATTGTTGAGGA+GGG | - | chr1_4:52597099-52597118 | None:intergenic | 50.0% | |
| CAGTGTCACGAGGTCCAATT+TGG | + | chr1_4:52597634-52597653 | Msa0169370:intron | 50.0% | |
| ! | GGGCTCCCTAACCTGATTTT+GGG | - | chr1_4:52597831-52597850 | None:intergenic | 50.0% |
| ! | AGGGCTCCCTAACCTGATTT+TGG | - | chr1_4:52597832-52597851 | None:intergenic | 50.0% |
| ATGGGGGAAATGGGAAATCG+AGG | + | chr1_4:52598013-52598032 | Msa0169370:intron | 50.0% | |
| TGGGGGAAATGGGAAATCGA+GGG | + | chr1_4:52598014-52598033 | Msa0169370:intron | 50.0% | |
| ATCGAGGGAGAAAGCAGGAT+TGG | + | chr1_4:52598029-52598048 | Msa0169370:intron | 50.0% | |
| CAATCTCGGGAGACCAAAAG+AGG | + | chr1_4:52598581-52598600 | Msa0169370:intron | 50.0% | |
| TCTTTCCTCACAGGATCTCC+TGG | - | chr1_4:52599236-52599255 | None:intergenic | 50.0% | |
| TGCCGAAGCAGCGTCTGATT+CGG | + | chr1_4:52597027-52597046 | Msa0169370:CDS | 55.0% | |
| AGCCGAATCAGACGCTGCTT+CGG | - | chr1_4:52597032-52597051 | None:intergenic | 55.0% | |
| ! | TGATTCGGCTCCAGTTCCCT+TGG | + | chr1_4:52597042-52597061 | Msa0169370:CDS | 55.0% |
| TAGAGCCTTGCCAAGGGAAC+TGG | - | chr1_4:52597055-52597074 | None:intergenic | 55.0% | |
| CCAGGTGCAGATTGTTGAGG+AGG | - | chr1_4:52597100-52597119 | None:intergenic | 55.0% | |
| CCTCCTCAACAATCTGCACC+TGG | + | chr1_4:52597097-52597116 | Msa0169370:CDS | 55.0% | |
| GGGAAATCGAGGGAGAAAGC+AGG | + | chr1_4:52598024-52598043 | Msa0169370:intron | 55.0% | |
| GAGGGAGAAAGCAGGATTGG+AGG | + | chr1_4:52598032-52598051 | Msa0169370:intron | 55.0% | |
| CAAGAAATGGCGGCAGTCGC+TGG | - | chr1_4:52596556-52596575 | None:intergenic | 60.0% | |
| TAGCTATTGCCCCACCCGCA+AGG | + | chr1_4:52598409-52598428 | Msa0169370:intron | 60.0% | |
| TCCCAGTAGGGGCTGCAAAG+CGG | + | chr1_4:52598433-52598452 | Msa0169370:intron | 60.0% | |
| ACACCACTGCCTCACCCACA+AGG | + | chr1_4:52598464-52598483 | Msa0169370:intron | 60.0% | |
| GCCTCACCCACAAGGTGGTT+AGG | + | chr1_4:52598472-52598491 | Msa0169370:intron | 60.0% | |
| GCCTAACCACCTTGTGGGTG+AGG | - | chr1_4:52598476-52598495 | None:intergenic | 60.0% | |
| ACCCACAAGGTGGTTAGGCC+TGG | + | chr1_4:52598477-52598496 | Msa0169370:intron | 60.0% | |
| GCCAGGCCTAACCACCTTGT+GGG | - | chr1_4:52598481-52598500 | None:intergenic | 60.0% | |
| AGCCAGGCCTAACCACCTTG+TGG | - | chr1_4:52598482-52598501 | None:intergenic | 60.0% | |
| CGGCTCCAGTTCCCTTGGCA+AGG | + | chr1_4:52597047-52597066 | Msa0169370:CDS | 65.0% | |
| TACTGGGAGCCTTGCGGGTG+GGG | - | chr1_4:52598421-52598440 | None:intergenic | 65.0% | |
| CTACTGGGAGCCTTGCGGGT+GGG | - | chr1_4:52598422-52598441 | None:intergenic | 65.0% | |
| CACCCGCAAGGCTCCCAGTA+GGG | + | chr1_4:52598421-52598440 | Msa0169370:intron | 65.0% | |
| ACCCGCAAGGCTCCCAGTAG+GGG | + | chr1_4:52598422-52598441 | Msa0169370:intron | 65.0% | |
| AGCCCCTACTGGGAGCCTTG+CGG | - | chr1_4:52598427-52598446 | None:intergenic | 65.0% | |
| CCCGCTTTGCAGCCCCTACT+GGG | - | chr1_4:52598437-52598456 | None:intergenic | 65.0% | |
| CCCAGTAGGGGCTGCAAAGC+GGG | + | chr1_4:52598434-52598453 | Msa0169370:intron | 65.0% | |
| ACCCGCTTTGCAGCCCCTAC+TGG | - | chr1_4:52598438-52598457 | None:intergenic | 65.0% | |
| AGTAGGGGCTGCAAAGCGGG+TGG | + | chr1_4:52598437-52598456 | Msa0169370:intron | 65.0% | |
| CCACCTTGTGGGTGAGGCAG+TGG | - | chr1_4:52598470-52598489 | None:intergenic | 65.0% | |
| CCACTGCCTCACCCACAAGG+TGG | + | chr1_4:52598467-52598486 | Msa0169370:intron | 65.0% | |
| ! | GATCTGAGGCAGCCGCCTCA+CGG | - | chr1_4:52598524-52598543 | None:intergenic | 65.0% |
| CTGGAGGAGAGAGCGGCTCT+CGG | - | chr1_4:52598799-52598818 | None:intergenic | 65.0% | |
| CCTACTGGGAGCCTTGCGGG+TGG | - | chr1_4:52598423-52598442 | None:intergenic | 70.0% | |
| CCACCCGCAAGGCTCCCAGT+AGG | + | chr1_4:52598420-52598439 | Msa0169370:intron | 70.0% | |
| GCCCCTACTGGGAGCCTTGC+GGG | - | chr1_4:52598426-52598445 | None:intergenic | 70.0% | |
| GGTGGTTAGGCCTGGCTGCG+AGG | + | chr1_4:52598485-52598504 | Msa0169370:intron | 70.0% | |
| GGTTAGGCCTGGCTGCGAGG+CGG | + | chr1_4:52598488-52598507 | Msa0169370:intron | 70.0% | |
| GGACGGAGCCATCCGTGAGG+CGG | + | chr1_4:52598509-52598528 | Msa0169370:intron | 70.0% | |
| TGAGGCAGCCGCCTCACGGA+TGG | - | chr1_4:52598520-52598539 | None:intergenic | 70.0% | |
| AGGCCTGGCTGCGAGGCGGA+CGG | + | chr1_4:52598492-52598511 | Msa0169370:intron | 75.0% | |
| GGCGGACGGAGCCATCCGTG+AGG | + | chr1_4:52598506-52598525 | Msa0169370:intron | 75.0% | |
| ! | GCTCCGTCCGCCTCGCAGCC+AGG | - | chr1_4:52598498-52598517 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 52596466 | 52599496 | 52596466 | ID=Msa0169370;Name=Msa0169370 |
| chr1_4 | mRNA | 52596466 | 52599496 | 52596466 | ID=Msa0169370-mRNA-1;Parent=Msa0169370;Name=Msa0169370-mRNA-1;_AED=0.00;_eAED=0.00;_QI=120|1|1|1|0.5|0.33|3|204|120 |
| chr1_4 | exon | 52596466 | 52596574 | 52596466 | ID=Msa0169370-mRNA-1:exon:15632;Parent=Msa0169370-mRNA-1 |
| chr1_4 | exon | 52596801 | 52597118 | 52596801 | ID=Msa0169370-mRNA-1:exon:15633;Parent=Msa0169370-mRNA-1 |
| chr1_4 | exon | 52599237 | 52599496 | 52599237 | ID=Msa0169370-mRNA-1:exon:15634;Parent=Msa0169370-mRNA-1 |
| chr1_4 | five_prime_UTR | 52596466 | 52596574 | 52596466 | ID=Msa0169370-mRNA-1:five_prime_utr;Parent=Msa0169370-mRNA-1 |
| chr1_4 | five_prime_UTR | 52596801 | 52596811 | 52596801 | ID=Msa0169370-mRNA-1:five_prime_utr;Parent=Msa0169370-mRNA-1 |
| chr1_4 | CDS | 52596812 | 52597118 | 52596812 | ID=Msa0169370-mRNA-1:cds;Parent=Msa0169370-mRNA-1 |
| chr1_4 | CDS | 52599237 | 52599292 | 52599237 | ID=Msa0169370-mRNA-1:cds;Parent=Msa0169370-mRNA-1 |
| chr1_4 | three_prime_UTR | 52599293 | 52599496 | 52599293 | ID=Msa0169370-mRNA-1:three_prime_utr;Parent=Msa0169370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
