AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1313140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1313140 MtrunA17_Chr8g0341531 99.213 254 2 0 1 254 1 254 0.0 510
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1313140 AT1G51730.1 70.445 247 71 2 1 246 1 246 8.09e-106 306

Find 66 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATATCGTCTGAAGATTTA+AGG 0.204105 8_4:+10906326 Msa1313140:CDS
TGGCGTGTGACAATGTATTA+AGG 0.299410 8_4:+10910867 Msa1313140:three_prime_UTR
AGGCATTCTTACATCTTCTT+TGG 0.306333 8_4:-10906800 None:intergenic
TATATGAACACAAAGACTAA+TGG 0.354098 8_4:+10910923 Msa1313140:three_prime_UTR
TTAGTTGGATTGGATTGAAT+TGG 0.375284 8_4:-10904292 None:intergenic
TTTAATCTGGAAGCACCTAT+TGG 0.387103 8_4:-10904630 None:intergenic
TTCATGTTAGAAATACATTC+TGG 0.390456 8_4:+10904587 Msa1313140:intron
CAGTCAGTGATTGATTGATT+AGG 0.390664 8_4:+10904212 Msa1313140:five_prime_UTR
AGCATTGGAAGCTATACTTA+TGG 0.397259 8_4:+10904462 Msa1313140:CDS
AGCTGTTGTCACGGAAGATT+TGG 0.403140 8_4:+10910495 Msa1313140:CDS
GTGGTTTAAGCACTTCCAAT+AGG 0.412630 8_4:+10904615 Msa1313140:CDS
TTCAAAAGCGGAGGTTCGTC+TGG 0.413109 8_4:-10906160 None:intergenic
ATATGAACACAAAGACTAAT+GGG 0.415701 8_4:+10910924 Msa1313140:three_prime_UTR
TCATGGTGAGTTAGTTGGAT+TGG 0.430928 8_4:-10904302 None:intergenic
ACCTGTCATGGTGAGTTAGT+TGG 0.434602 8_4:-10904307 None:intergenic
CCACAGGCATCTGAAAATCT+TGG 0.452799 8_4:+10906679 Msa1313140:intron
AGAAATGGAGATTGAAGCAT+TGG 0.464035 8_4:+10904447 Msa1313140:CDS
TTGAGGGAGTTTCCATCATG+AGG 0.477172 8_4:+10910795 Msa1313140:three_prime_UTR
CTACGCGCAAGAACAAGAAA+TGG 0.480177 8_4:+10904432 Msa1313140:CDS
AGATTTGGATGAGGAGGATG+AGG 0.480488 8_4:+10910510 Msa1313140:CDS
CCAGATTAAAATCACTGCTC+AGG 0.484543 8_4:+10904643 Msa1313140:CDS
TGCAATTTAACTTGCTCGCA+TGG 0.486262 8_4:-10910726 None:intergenic
GAAATACATTCTGGTGAAAG+TGG 0.495312 8_4:+10904596 Msa1313140:intron
ACTATACAAAACAGTTTGCA+AGG 0.496821 8_4:+10906304 Msa1313140:intron
TCCAACTAACTCACCATGAC+AGG 0.510196 8_4:+10904306 Msa1313140:exon
TGTATTCATTCATTCATCCC+TGG 0.514509 8_4:-10904177 None:intergenic
GACGAGTCAAATACTAATCC+AGG 0.514669 8_4:+10905953 Msa1313140:CDS
GAAAGACAAACTTCAACAAG+AGG 0.517470 8_4:+10906354 Msa1313140:CDS
ACTCTTTAGCTGAGCTAACA+AGG 0.518163 8_4:-10906720 None:intergenic
ATACTTATGGATGAATTCAA+AGG 0.522807 8_4:+10904475 Msa1313140:CDS
GATGATGATGAGGATTTCGA+AGG 0.528804 8_4:+10910547 Msa1313140:CDS
GGCAGACAGTGGTTTGAAAG+TGG 0.536978 8_4:+10908256 Msa1313140:CDS
TTAAAAGGTGTATTTGGCCA+GGG 0.542021 8_4:+10904160 None:intergenic
GCAATTGTACAGGAGGAAGA+TGG 0.544792 8_4:+10905929 Msa1313140:intron
GAAGTAGCAAGCACAGACTC+TGG 0.546961 8_4:-10908214 None:intergenic
CACGGAAGATTTGGATGAGG+AGG 0.550207 8_4:+10910504 Msa1313140:CDS
GACAGTGGTTTGAAAGTGGA+AGG 0.561439 8_4:+10908260 Msa1313140:CDS
TGAGGGAGTTTCCATCATGA+GGG 0.562768 8_4:+10910796 Msa1313140:three_prime_UTR
AGATTGAAGTGAAGGTGTAA+AGG 0.564919 8_4:-10904248 None:intergenic
CATTGACTTTGATGATGATG+AGG 0.578083 8_4:+10910537 Msa1313140:CDS
GTCTGTGCTTGCTACTTCGA+AGG 0.579213 8_4:+10908219 Msa1313140:CDS
TCTTAGATAGTGGTACCTCA+TGG 0.579437 8_4:+10907706 Msa1313140:intron
TGGTGATGCTGAAGCAGAAG+AGG 0.584742 8_4:+10906774 Msa1313140:CDS
GGCATCTGAAAATCTTGGCA+TGG 0.589383 8_4:+10906684 Msa1313140:intron
TCGAAGGAAAAGAAACTCAC+TGG 0.592415 8_4:+10908235 Msa1313140:CDS
GAAAGGTGCAGCTGTTGTCA+CGG 0.599442 8_4:+10910486 Msa1313140:intron
GTGGTTTGAAAGTGGAAGGA+TGG 0.600163 8_4:+10908264 Msa1313140:CDS
AGGGAGTTTCCATCATGAGG+GGG 0.611209 8_4:+10910798 Msa1313140:three_prime_UTR
TGCTCGCATGGAAGAATGTG+TGG 0.612004 8_4:-10910714 None:intergenic
AAATTTGGGAATACCTGTCA+TGG 0.615517 8_4:-10904319 None:intergenic
CTAAAGAGTGGTTGACTGAG+CGG 0.616560 8_4:+10906734 Msa1313140:CDS
TTGTTAGCTCAGCTAAAGAG+TGG 0.621613 8_4:+10906722 Msa1313140:CDS
GAGGGAGTTTCCATCATGAG+GGG 0.622813 8_4:+10910797 Msa1313140:three_prime_UTR
AGGTGTAAAGGTCGAAGAAG+AGG 0.625268 8_4:-10904236 None:intergenic
AAGTGTAAAGATTGAAGTGA+AGG 0.625529 8_4:-10904256 None:intergenic
TGTCACGGAAGATTTGGATG+AGG 0.632911 8_4:+10910501 Msa1313140:CDS
CTGCTCACATTCAAAAGCGG+AGG 0.633056 8_4:-10906169 None:intergenic
GACCTGCTCACATTCAAAAG+CGG 0.648261 8_4:-10906172 None:intergenic
ACAGTAACTGCTTCTCCATG+AGG 0.657064 8_4:-10907721 None:intergenic
AACTCCCTCAAAAGACAACA+AGG 0.666325 8_4:-10910783 None:intergenic
CTCTTTAGCTGAGCTAACAA+GGG 0.666399 8_4:-10906719 None:intergenic
TGATGCTGAAGCAGAAGAGG+CGG 0.674289 8_4:+10906777 Msa1313140:CDS
AGAAACTCACTGGCAGACAG+TGG 0.676924 8_4:+10908245 Msa1313140:CDS
CGGTATTGTGAAGACTCAGA+TGG 0.683666 8_4:+10906754 Msa1313140:CDS
TGAACACAAAGACTAATGGG+TGG 0.687410 8_4:+10910927 Msa1313140:three_prime_UTR
GGATGAATGAATGAATACAG+AGG 0.736890 8_4:+10904181 Msa1313140:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACATAATTTATATAACT+TGG - chr8_4:10905339-10905358 None:intergenic 10.0%
!! TAAAAATTGAGATAATTATT+AGG + chr8_4:10908451-10908470 Msa1313140:intron 10.0%
!!! TTGTTTTATAATTCAATAAA+TGG - chr8_4:10910262-10910281 None:intergenic 10.0%
!! ACAAAATAGAATATAAATTA+AGG - chr8_4:10910590-10910609 None:intergenic 10.0%
!!! ACTATTTTTATTTCTCAATT+TGG + chr8_4:10904536-10904555 Msa1313140:intron 15.0%
!!! TATTTATGTATTTAAGTTCT+TGG + chr8_4:10904696-10904715 Msa1313140:intron 15.0%
!!! ATTTATGTATTTAAGTTCTT+GGG + chr8_4:10904697-10904716 Msa1313140:intron 15.0%
!!! TATTTTTTTAATCAAATCTG+AGG + chr8_4:10905166-10905185 Msa1313140:intron 15.0%
!! TGAATTTCAATGAAATTATT+TGG + chr8_4:10905694-10905713 Msa1313140:intron 15.0%
!! AAGAAAATAATATATCAAAG+AGG - chr8_4:10905985-10906004 None:intergenic 15.0%
!! ACTAGTAGATAATATATATA+AGG + chr8_4:10907309-10907328 Msa1313140:intron 15.0%
!! TGTTAAAAACAAAAGAATTT+GGG - chr8_4:10908027-10908046 None:intergenic 15.0%
!! TTGTTAAAAACAAAAGAATT+TGG - chr8_4:10908028-10908047 None:intergenic 15.0%
!!! TAGTTGATAAAAAAAATTCT+TGG + chr8_4:10908409-10908428 Msa1313140:intron 15.0%
!!! TTGATAGTAATTTTTGAAAT+CGG + chr8_4:10908815-10908834 Msa1313140:intron 15.0%
!! GTTTGTATTAAGAATAAATA+GGG - chr8_4:10909000-10909019 None:intergenic 15.0%
!! TGTTTGTATTAAGAATAAAT+AGG - chr8_4:10909001-10909020 None:intergenic 15.0%
!!! TTATTCATTAATTAAGTTGT+CGG - chr8_4:10909031-10909050 None:intergenic 15.0%
!!! AAAGTCAATTTTAATATTCT+CGG + chr8_4:10909083-10909102 Msa1313140:intron 15.0%
!!! ATTTGTTTTTGTTATCATTA+AGG + chr8_4:10910821-10910840 Msa1313140:three_prime_UTR 15.0%
!! TAATGATGAAAAACCAAAAA+GGG - chr8_4:10904401-10904420 None:intergenic 20.0%
!! ATAATGATGAAAAACCAAAA+AGG - chr8_4:10904402-10904421 None:intergenic 20.0%
!! TACATAAATACACAAAAAGA+AGG - chr8_4:10904686-10904705 None:intergenic 20.0%
!! CTATTTGGTAAAATAATTTG+CGG + chr8_4:10904766-10904785 Msa1313140:intron 20.0%
!!! TTTTTTCAATTAAGATAACG+AGG + chr8_4:10904890-10904909 Msa1313140:intron 20.0%
!!! TTTTTCAATTAAGATAACGA+GGG + chr8_4:10904891-10904910 Msa1313140:intron 20.0%
!! TGTTTCTTCACTTATAAAAA+AGG + chr8_4:10905358-10905377 Msa1313140:intron 20.0%
!! TATAAAGTTGTAGATGTTTA+TGG + chr8_4:10905385-10905404 Msa1313140:intron 20.0%
!! ATAATGAAAAGTGAAAACAA+TGG - chr8_4:10905627-10905646 None:intergenic 20.0%
!! CATAACACAGATAAATATAA+GGG - chr8_4:10905910-10905929 None:intergenic 20.0%
!! TATATTATCAACCGTATATT+AGG - chr8_4:10906069-10906088 None:intergenic 20.0%
!!! TTGATAATATACAAAAGACA+TGG + chr8_4:10906078-10906097 Msa1313140:intron 20.0%
!!! TATATATTACTGTTGTTTGT+AGG + chr8_4:10906201-10906220 Msa1313140:intron 20.0%
!! ATGAAACAAAAACATATGTA+CGG - chr8_4:10906245-10906264 None:intergenic 20.0%
!! ATAAACAGAAAAACTGTATA+TGG - chr8_4:10906390-10906409 None:intergenic 20.0%
!! ATTAAGAAGTCTTTCAATTT+GGG - chr8_4:10906459-10906478 None:intergenic 20.0%
!! CAAATTGAAAGAATTCTTAA+TGG + chr8_4:10906516-10906535 Msa1313140:intron 20.0%
!! CTATATTCTTTAGTCATATA+TGG - chr8_4:10906935-10906954 None:intergenic 20.0%
!! AGAAGATTTATAAAAGATGA+GGG - chr8_4:10906981-10907000 None:intergenic 20.0%
!! TTGGATATGAAGTTTAATAA+GGG - chr8_4:10907100-10907119 None:intergenic 20.0%
!! TAGATAATATATATAAGGTG+TGG + chr8_4:10907314-10907333 Msa1313140:intron 20.0%
!! AATAGTCAGTGATATTTAAA+TGG + chr8_4:10908069-10908088 Msa1313140:intron 20.0%
!! TGTTAAAAACAAAAGGATTT+GGG - chr8_4:10908112-10908131 None:intergenic 20.0%
!! TTGTTAAAAACAAAAGGATT+TGG - chr8_4:10908113-10908132 None:intergenic 20.0%
!!! ACATAGAAAATGTCATTTTA+AGG - chr8_4:10908323-10908342 None:intergenic 20.0%
!! ATCTATGATTCAGAAAATTA+AGG + chr8_4:10908657-10908676 Msa1313140:intron 20.0%
!! TCTATGATTCAGAAAATTAA+GGG + chr8_4:10908658-10908677 Msa1313140:intron 20.0%
!! CAGAAAAAGAATAAAAACAA+AGG + chr8_4:10908766-10908785 Msa1313140:intron 20.0%
!! ATTAAGAATAAATAGGGAAA+GGG - chr8_4:10908994-10909013 None:intergenic 20.0%
!! TATTAAGAATAAATAGGGAA+AGG - chr8_4:10908995-10909014 None:intergenic 20.0%
!!! GAGAATATTAAAATTGACTT+TGG - chr8_4:10909084-10909103 None:intergenic 20.0%
!! TCATTAAGAGACATTATAAT+AGG - chr8_4:10909114-10909133 None:intergenic 20.0%
!!! ATGTATTCTATCTTTTGATT+GGG - chr8_4:10910027-10910046 None:intergenic 20.0%
!! TTTAGACATTATAATAGGAT+GGG - chr8_4:10910316-10910335 None:intergenic 20.0%
!! ATTTAGACATTATAATAGGA+TGG - chr8_4:10910317-10910336 None:intergenic 20.0%
!! TCTCATTTAGACATTATAAT+AGG - chr8_4:10910321-10910340 None:intergenic 20.0%
!! TATTATAATGTCTAAATGAG+AGG + chr8_4:10910320-10910339 Msa1313140:intron 20.0%
! AGAGTTGAAGATTGAAATTT+GGG - chr8_4:10904336-10904355 None:intergenic 25.0%
! TCAATGGAATAGAATGAAAT+TGG - chr8_4:10904359-10904378 None:intergenic 25.0%
! ATACTTATGGATGAATTCAA+AGG + chr8_4:10904475-10904494 Msa1313140:CDS 25.0%
! TTCATGTTAGAAATACATTC+TGG + chr8_4:10904587-10904606 Msa1313140:intron 25.0%
!!! ATGATTTTTTTACTCCATGT+AGG + chr8_4:10904741-10904760 Msa1313140:intron 25.0%
! ATAGTGTTTGGTAAAATTAG+CGG + chr8_4:10904808-10904827 Msa1313140:intron 25.0%
!!! CAACAACATAACTTTTTCTT+TGG - chr8_4:10905258-10905277 None:intergenic 25.0%
!!! TGAATTAGCATTTTAGCTAA+TGG + chr8_4:10905307-10905326 Msa1313140:intron 25.0%
!!! GAATTAGCATTTTAGCTAAT+GGG + chr8_4:10905308-10905327 Msa1313140:intron 25.0%
! TTATATCAGTCAAAGAAAGA+GGG - chr8_4:10905828-10905847 None:intergenic 25.0%
! ATTATATCAGTCAAAGAAAG+AGG - chr8_4:10905829-10905848 None:intergenic 25.0%
! GCATAACACAGATAAATATA+AGG - chr8_4:10905911-10905930 None:intergenic 25.0%
!! GTAGTTTTCTTCCTAATATA+CGG + chr8_4:10906055-10906074 Msa1313140:intron 25.0%
! CATTAAGAAGTCTTTCAATT+TGG - chr8_4:10906460-10906479 None:intergenic 25.0%
! CAAATTGAAAGACTTCTTAA+TGG + chr8_4:10906458-10906477 Msa1313140:intron 25.0%
! TGGAAACATTGTATTCAAAA+TGG - chr8_4:10906542-10906561 None:intergenic 25.0%
! TATGCATATATACATAAAGG+TGG - chr8_4:10906562-10906581 None:intergenic 25.0%
! GCTTATGCATATATACATAA+AGG - chr8_4:10906565-10906584 None:intergenic 25.0%
! AAACTATCATTGTATACTGT+AGG - chr8_4:10906823-10906842 None:intergenic 25.0%
! GAAGATTTATAAAAGATGAG+GGG - chr8_4:10906980-10906999 None:intergenic 25.0%
! CAGAAGATTTATAAAAGATG+AGG - chr8_4:10906982-10907001 None:intergenic 25.0%
! CTTGGATATGAAGTTTAATA+AGG - chr8_4:10907101-10907120 None:intergenic 25.0%
! CTTATTAAACTTCATATCCA+AGG + chr8_4:10907099-10907118 Msa1313140:intron 25.0%
!! TGAATCTAGATTTTATGCTT+TGG + chr8_4:10907179-10907198 Msa1313140:intron 25.0%
!! TTGTCTTTGAAAACAAAGTT+GGG - chr8_4:10907254-10907273 None:intergenic 25.0%
!! ATTGTCTTTGAAAACAAAGT+TGG - chr8_4:10907255-10907274 None:intergenic 25.0%
!! ACTAGTCAACTTTTGTTAAA+GGG - chr8_4:10907295-10907314 None:intergenic 25.0%
!! TACTAGTCAACTTTTGTTAA+AGG - chr8_4:10907296-10907315 None:intergenic 25.0%
! AATATATATAAGGTGTGGTT+AGG + chr8_4:10907319-10907338 Msa1313140:intron 25.0%
! ATATATATAAGGTGTGGTTA+GGG + chr8_4:10907320-10907339 Msa1313140:intron 25.0%
! TAAAGTATAATCCTGTAGTT+CGG + chr8_4:10907500-10907519 Msa1313140:intron 25.0%
! ACATAGTCAGTGATATTTAA+AGG + chr8_4:10907983-10908002 Msa1313140:intron 25.0%
! CATAGTCAGTGATATTTAAA+GGG + chr8_4:10907984-10908003 Msa1313140:intron 25.0%
! AAAAACAAAAGAATTTGGGT+TGG - chr8_4:10908023-10908042 None:intergenic 25.0%
!! CTTCACTTGTTAAAAACAAA+AGG - chr8_4:10908034-10908053 None:intergenic 25.0%
! CATCAAGGTATAAATAGTAA+GGG - chr8_4:10908300-10908319 None:intergenic 25.0%
!! CAATTTTTAATGTCCCATTT+TGG - chr8_4:10908440-10908459 None:intergenic 25.0%
!! ATGATAATTTTATAGCTCAC+AGG - chr8_4:10908489-10908508 None:intergenic 25.0%
! CTATGATTCAGAAAATTAAG+GGG + chr8_4:10908659-10908678 Msa1313140:intron 25.0%
! TGAAACTTCACTGTAATTAT+TGG - chr8_4:10908867-10908886 None:intergenic 25.0%
! TAAGAGACATTATAATAGGA+GGG - chr8_4:10909110-10909129 None:intergenic 25.0%
! TTAAGAGACATTATAATAGG+AGG - chr8_4:10909111-10909130 None:intergenic 25.0%
! CAAAAATGTAGAAAAGATGA+AGG - chr8_4:10909395-10909414 None:intergenic 25.0%
! AGAGATCAAAAGAAAAATGA+AGG - chr8_4:10909440-10909459 None:intergenic 25.0%
!! AAACACTAAAACTCCATTTT+TGG + chr8_4:10909880-10909899 Msa1313140:intron 25.0%
! TGTACCAAAAACTTCAAAAT+CGG + chr8_4:10909908-10909927 Msa1313140:intron 25.0%
!! CATGTATTCTATCTTTTGAT+TGG - chr8_4:10910028-10910047 None:intergenic 25.0%
! TTCAGAATTGAATATTACAC+AGG + chr8_4:10910060-10910079 Msa1313140:intron 25.0%
!! GATATTATTAAAACTGGCTT+TGG - chr8_4:10910291-10910310 None:intergenic 25.0%
! TTTAACAAAGAATTGTTGAG+AGG - chr8_4:10910370-10910389 None:intergenic 25.0%
! ATCATTACATGTAAACTTTC+TGG - chr8_4:10910613-10910632 None:intergenic 25.0%
!!! TACATGTTTTATCTGTTTCT+TGG + chr8_4:10910637-10910656 Msa1313140:intron 25.0%
!! CGTTTCTATTTTGTAGTTAT+CGG + chr8_4:10910892-10910911 Msa1313140:three_prime_UTR 25.0%
! TATATGAACACAAAGACTAA+TGG + chr8_4:10910923-10910942 Msa1313140:three_prime_UTR 25.0%
! ATATGAACACAAAGACTAAT+GGG + chr8_4:10910924-10910943 Msa1313140:three_prime_UTR 25.0%
AAGTGTAAAGATTGAAGTGA+AGG - chr8_4:10904259-10904278 None:intergenic 30.0%
! TTAGTTGGATTGGATTGAAT+TGG - chr8_4:10904295-10904314 None:intergenic 30.0%
GAGAGTTGAAGATTGAAATT+TGG - chr8_4:10904337-10904356 None:intergenic 30.0%
! ATAAGCTAGCTTATAGTGTT+TGG + chr8_4:10904796-10904815 Msa1313140:intron 30.0%
GAAATGACATTGAAAAGACA+TGG + chr8_4:10904851-10904870 Msa1313140:intron 30.0%
ATTGAAAAGACATGGTTACT+TGG + chr8_4:10904859-10904878 Msa1313140:intron 30.0%
!! TAAATACCGAAAAGTGCTAT+GGG - chr8_4:10905113-10905132 None:intergenic 30.0%
! AAATCTGAGGAGTTGATTTA+TGG + chr8_4:10905179-10905198 Msa1313140:intron 30.0%
!! ACTTTTTCTTTGGTTATGCA+AGG - chr8_4:10905248-10905267 None:intergenic 30.0%
ATGTTTATGGAGAAGTTGAA+CGG + chr8_4:10905398-10905417 Msa1313140:intron 30.0%
TTAAGACTATCCATGACATA+AGG - chr8_4:10905509-10905528 None:intergenic 30.0%
TCAAACACAGATTGATTACA+TGG - chr8_4:10905557-10905576 None:intergenic 30.0%
! TATTTTCCTGTTGTATGTAC+TGG + chr8_4:10905670-10905689 Msa1313140:intron 30.0%
! TACAACAAGTTACTTTAAGC+TGG - chr8_4:10905745-10905764 None:intergenic 30.0%
!! ACTTGTTGTACACAATTTAG+TGG + chr8_4:10905755-10905774 Msa1313140:intron 30.0%
TGTTTGTGGATATAGAAGTT+CGG + chr8_4:10905785-10905804 Msa1313140:intron 30.0%
TCCTCACAATCACATAAATT+TGG + chr8_4:10905875-10905894 Msa1313140:intron 30.0%
TCCAAATTTATGTGATTGTG+AGG - chr8_4:10905879-10905898 None:intergenic 30.0%
ACAAAAACTGAAAGACAAGA+TGG - chr8_4:10906010-10906029 None:intergenic 30.0%
ACTATACAAAACAGTTTGCA+AGG + chr8_4:10906304-10906323 Msa1313140:intron 30.0%
GAATATCGTCTGAAGATTTA+AGG + chr8_4:10906326-10906345 Msa1313140:CDS 30.0%
! TGCAAGTATTGTACTCAAAA+TGG - chr8_4:10906484-10906503 None:intergenic 30.0%
ATAAAATCTAGATTCAGCCT+TGG - chr8_4:10907175-10907194 None:intergenic 30.0%
AAACAAAGTTGGGTTAAACA+CGG - chr8_4:10907244-10907263 None:intergenic 30.0%
! CAACTTTTGTTAAAGGGTAA+TGG - chr8_4:10907289-10907308 None:intergenic 30.0%
TATATATAAGGTGTGGTTAG+GGG + chr8_4:10907321-10907340 Msa1313140:intron 30.0%
AAAGTATAATCCTGTAGTTC+GGG + chr8_4:10907501-10907520 Msa1313140:intron 30.0%
GTTAGTAGTATTAGCAAAAG+TGG + chr8_4:10907523-10907542 Msa1313140:intron 30.0%
! AGTTACTGTCGAAACATTTT+TGG + chr8_4:10907735-10907754 Msa1313140:CDS 30.0%
TACAACAAGAGCAACAATAA+GGG - chr8_4:10907813-10907832 None:intergenic 30.0%
ATACAACAAGAGCAACAATA+AGG - chr8_4:10907814-10907833 None:intergenic 30.0%
AGGGAGAGTTTAAAAGAAAA+TGG + chr8_4:10907914-10907933 Msa1313140:intron 30.0%
GGGAGAGTTTAAAAGAAAAT+GGG + chr8_4:10907915-10907934 Msa1313140:intron 30.0%
AGAGTTTAAAAGAAAATGGG+TGG + chr8_4:10907918-10907937 Msa1313140:intron 30.0%
GAGTTTAAAAGAAAATGGGT+GGG + chr8_4:10907919-10907938 Msa1313140:intron 30.0%
AAAAACAAAAGGATTTGGGT+TGG - chr8_4:10908108-10908127 None:intergenic 30.0%
TTAACAAGTGAAGTCATTGA+AGG + chr8_4:10908041-10908060 Msa1313140:intron 30.0%
GCATCAAGGTATAAATAGTA+AGG - chr8_4:10908301-10908320 None:intergenic 30.0%
!!! AATGTCATTTTAAGGCATCA+AGG - chr8_4:10908315-10908334 None:intergenic 30.0%
!!! ACGTGTATTTTAGTCATAAG+TGG - chr8_4:10908370-10908389 None:intergenic 30.0%
! TTTTTAATGTCCCATTTTGG+AGG - chr8_4:10908437-10908456 None:intergenic 30.0%
TCATCTTGTAATCAAGTGAA+CGG - chr8_4:10908526-10908545 None:intergenic 30.0%
CAGTTTATTACTTTAACCTC+TGG + chr8_4:10908688-10908707 Msa1313140:intron 30.0%
CAAAGGAAAATAGTAACACT+AGG + chr8_4:10908783-10908802 Msa1313140:intron 30.0%
GTGAAGTTTCAAATGAGATA+AGG + chr8_4:10908876-10908895 Msa1313140:intron 30.0%
!! GAAGGTATTGAGTTGTTATT+GGG - chr8_4:10908950-10908969 None:intergenic 30.0%
!! AGAAGGTATTGAGTTGTTAT+TGG - chr8_4:10908951-10908970 None:intergenic 30.0%
AAGAGACATTATAATAGGAG+GGG - chr8_4:10909109-10909128 None:intergenic 30.0%
TACTTCTAATTATAGAACCC+TGG - chr8_4:10909207-10909226 None:intergenic 30.0%
! TGCGTTTTCAGTTCTTTAAA+TGG + chr8_4:10909504-10909523 Msa1313140:intron 30.0%
AATTGAATCAGAGTCATTGA+AGG - chr8_4:10909613-10909632 None:intergenic 30.0%
AGTTGCTCTTCATAGAATAT+AGG + chr8_4:10909635-10909654 Msa1313140:intron 30.0%
AATTATACCAGTGCAACTAT+CGG + chr8_4:10909741-10909760 Msa1313140:intron 30.0%
TGAAGAAAAAGATGCATAGT+GGG - chr8_4:10909858-10909877 None:intergenic 30.0%
ATGAAGAAAAAGATGCATAG+TGG - chr8_4:10909859-10909878 None:intergenic 30.0%
!! TTTGTACCTGTTTCTATCAA+CGG - chr8_4:10909945-10909964 None:intergenic 30.0%
TAGAATACATGCATAAACAC+TGG + chr8_4:10910037-10910056 Msa1313140:intron 30.0%
ATTGAATATTACACAGGAAC+TGG + chr8_4:10910066-10910085 Msa1313140:intron 30.0%
GAAATACATAGACATGGTTT+CGG + chr8_4:10910088-10910107 Msa1313140:intron 30.0%
TGGGACGATATTATTAAAAC+TGG - chr8_4:10910297-10910316 None:intergenic 30.0%
AAGTTAACCTAGTGCAAAAA+AGG + chr8_4:10910413-10910432 Msa1313140:intron 30.0%
!!! AACAAAACCTTTTTTGCACT+AGG - chr8_4:10910423-10910442 None:intergenic 30.0%
! TTTTGTGTTTGTTCACAGAA+AGG + chr8_4:10910469-10910488 Msa1313140:intron 30.0%
! GAGTATTTAGCAGATGTTTT+TGG + chr8_4:10910847-10910866 Msa1313140:three_prime_UTR 30.0%
! TATTGCATGATACTTTTGCA+TGG - chr8_4:10911012-10911031 None:intergenic 30.0%
TGTATTCATTCATTCATCCC+TGG - chr8_4:10904180-10904199 None:intergenic 35.0%
GGATGAATGAATGAATACAG+AGG + chr8_4:10904181-10904200 Msa1313140:five_prime_UTR 35.0%
CAGTCAGTGATTGATTGATT+AGG + chr8_4:10904212-10904231 Msa1313140:five_prime_UTR 35.0%
! AGATTGAAGTGAAGGTGTAA+AGG - chr8_4:10904251-10904270 None:intergenic 35.0%
AAATTTGGGAATACCTGTCA+TGG - chr8_4:10904322-10904341 None:intergenic 35.0%
! ACCAAAAAGGGTTAGCAAAA+CGG - chr8_4:10904389-10904408 None:intergenic 35.0%
AGAAATGGAGATTGAAGCAT+TGG + chr8_4:10904447-10904466 Msa1313140:CDS 35.0%
! AGCATTGGAAGCTATACTTA+TGG + chr8_4:10904462-10904481 Msa1313140:CDS 35.0%
GAAATACATTCTGGTGAAAG+TGG + chr8_4:10904596-10904615 Msa1313140:intron 35.0%
!! TTTAATCTGGAAGCACCTAT+TGG - chr8_4:10904633-10904652 None:intergenic 35.0%
TTTACCAAATAGAGCCTACA+TGG - chr8_4:10904758-10904777 None:intergenic 35.0%
AGACTATCGAAAACTGCTAT+AGG + chr8_4:10904964-10904983 Msa1313140:intron 35.0%
ACAAGCTCATGAGAAAACTA+CGG + chr8_4:10905003-10905022 Msa1313140:intron 35.0%
!! GTAAATACCGAAAAGTGCTA+TGG - chr8_4:10905114-10905133 None:intergenic 35.0%
TGTTTATGGAGAAGTTGAAC+GGG + chr8_4:10905399-10905418 Msa1313140:intron 35.0%
CTCTTGGTATTTATCCAAAC+TGG + chr8_4:10905483-10905502 Msa1313140:intron 35.0%
ATTCATCCAGTACATACAAC+AGG - chr8_4:10905679-10905698 None:intergenic 35.0%
CAAAGAAAGAGGGAAAGTAA+TGG - chr8_4:10905818-10905837 None:intergenic 35.0%
TTTATGTGATTGTGAGGAAG+AGG - chr8_4:10905873-10905892 None:intergenic 35.0%
TCTGTGTTATGCAATTGTAC+AGG + chr8_4:10905919-10905938 Msa1313140:intron 35.0%
ATATCAAAGAGGAAGAAACC+TGG - chr8_4:10905974-10905993 None:intergenic 35.0%
GAAAGACAAACTTCAACAAG+AGG + chr8_4:10906354-10906373 Msa1313140:CDS 35.0%
TTTGAGTACAATACTTGCAC+TGG + chr8_4:10906485-10906504 Msa1313140:intron 35.0%
!! ATTTGTTGTGCATACTTGTC+AGG + chr8_4:10906626-10906645 Msa1313140:intron 35.0%
AGGCATTCTTACATCTTCTT+TGG - chr8_4:10906803-10906822 None:intergenic 35.0%
! ATTTCCGAGCATTTGTTACA+TGG + chr8_4:10906899-10906918 Msa1313140:intron 35.0%
CATCGATGTTAGAAGGATTA+AGG + chr8_4:10907008-10907027 Msa1313140:intron 35.0%
! ACTATGACTTTCACTAGTCT+AGG - chr8_4:10907071-10907090 None:intergenic 35.0%
ACTTCATATCCAAGGTTCAT+TGG + chr8_4:10907107-10907126 Msa1313140:intron 35.0%
!!! AAGATCACTGATTTTCACCA+AGG + chr8_4:10907155-10907174 Msa1313140:intron 35.0%
AACAAAGTTGGGTTAAACAC+GGG - chr8_4:10907243-10907262 None:intergenic 35.0%
CTTCAATTGTGTTAAACCTC+TGG + chr8_4:10907364-10907383 Msa1313140:intron 35.0%
! AAATGTTGCTTGGAAAAAGC+TGG + chr8_4:10907658-10907677 Msa1313140:intron 35.0%
CCACTATCTAAGAATGTTGA+AGG - chr8_4:10907699-10907718 None:intergenic 35.0%
CCTTCAACATTCTTAGATAG+TGG + chr8_4:10907696-10907715 Msa1313140:intron 35.0%
ACAACAAGAGCAACAATAAG+GGG - chr8_4:10907812-10907831 None:intergenic 35.0%
GCAATCATGACAAATTGGTT+TGG - chr8_4:10908185-10908204 None:intergenic 35.0%
AACCAATTTGTCATGATTGC+AGG + chr8_4:10908185-10908204 Msa1313140:intron 35.0%
TTACAAGATGACCATACTAG+TGG + chr8_4:10908535-10908554 Msa1313140:intron 35.0%
!! TCCTGGCTTTTGAATTTGTT+AGG + chr8_4:10908566-10908585 Msa1313140:intron 35.0%
TCCTAACAAATTCAAAAGCC+AGG - chr8_4:10908570-10908589 None:intergenic 35.0%
! TAGACTAGTTGGATAGAAAC+TGG + chr8_4:10908633-10908652 Msa1313140:intron 35.0%
!! TTTTGAGAATCATTCTCCAG+AGG - chr8_4:10908707-10908726 None:intergenic 35.0%
GAGAATGATTCTCAAAACAG+AGG + chr8_4:10908710-10908729 Msa1313140:intron 35.0%
TTTCAAATGAGATAAGGCAC+AGG + chr8_4:10908882-10908901 Msa1313140:intron 35.0%
TTCAAATGAGATAAGGCACA+GGG + chr8_4:10908883-10908902 Msa1313140:intron 35.0%
! GTATTGAGTTGTTATTGGGT+GGG - chr8_4:10908946-10908965 None:intergenic 35.0%
!!! ACAAGGTGAAACTTTTTTGG+GGG - chr8_4:10909154-10909173 None:intergenic 35.0%
!!! GACAAGGTGAAACTTTTTTG+GGG - chr8_4:10909155-10909174 None:intergenic 35.0%
!!! GGACAAGGTGAAACTTTTTT+GGG - chr8_4:10909156-10909175 None:intergenic 35.0%
!!! AGGACAAGGTGAAACTTTTT+TGG - chr8_4:10909157-10909176 None:intergenic 35.0%
GTGAAGGAAAAGGAAATGAA+GGG - chr8_4:10909531-10909550 None:intergenic 35.0%
AGTGAAGGAAAAGGAAATGA+AGG - chr8_4:10909532-10909551 None:intergenic 35.0%
GAGAATGAAAGTGAAGGAAA+AGG - chr8_4:10909541-10909560 None:intergenic 35.0%
GTAGAAGAGAATGAAAGTGA+AGG - chr8_4:10909547-10909566 None:intergenic 35.0%
CGTTATTGCTCGCATTTATT+TGG - chr8_4:10909691-10909710 None:intergenic 35.0%
GGTATAATTGACGTCATAAC+AGG - chr8_4:10909730-10909749 None:intergenic 35.0%
TTGGTACATCATGCCAAAAA+TGG - chr8_4:10909896-10909915 None:intergenic 35.0%
!!! AGCACCGATTTTGAAGTTTT+TGG - chr8_4:10909915-10909934 None:intergenic 35.0%
!! TTGTACCTGTTTCTATCAAC+GGG - chr8_4:10909944-10909963 None:intergenic 35.0%
GACTTGTATTGAGAAATCTC+TGG + chr8_4:10909989-10910008 Msa1313140:intron 35.0%
GAACTGGAAATACATAGACA+TGG + chr8_4:10910082-10910101 Msa1313140:intron 35.0%
TAGAGTGTGGTTATTTGAGT+GGG - chr8_4:10910137-10910156 None:intergenic 35.0%
TTAGAGTGTGGTTATTTGAG+TGG - chr8_4:10910138-10910157 None:intergenic 35.0%
GTTATCAAGAAGTTAGAGTG+TGG - chr8_4:10910150-10910169 None:intergenic 35.0%
!! ATCCTTTCGCTATTTCTTCT+TGG + chr8_4:10910179-10910198 Msa1313140:intron 35.0%
AACCAAGAAGAAATAGCGAA+AGG - chr8_4:10910184-10910203 None:intergenic 35.0%
!! CATTGACTTTGATGATGATG+AGG + chr8_4:10910537-10910556 Msa1313140:CDS 35.0%
!! CTTTCCTTGTTGTCTTTTGA+GGG + chr8_4:10910779-10910798 Msa1313140:three_prime_UTR 35.0%
TCATGGTGAGTTAGTTGGAT+TGG - chr8_4:10904305-10904324 None:intergenic 40.0%
! ACCGTTTTGCTAACCCTTTT+TGG + chr8_4:10904385-10904404 Msa1313140:intron 40.0%
GTGGTTTAAGCACTTCCAAT+AGG + chr8_4:10904615-10904634 Msa1313140:CDS 40.0%
!! CCTGAGCAGTGATTTTAATC+TGG - chr8_4:10904646-10904665 None:intergenic 40.0%
CCAGATTAAAATCACTGCTC+AGG + chr8_4:10904643-10904662 Msa1313140:CDS 40.0%
!! TCTTGGGCATGCTTTTAGTT+CGG + chr8_4:10904713-10904732 Msa1313140:intron 40.0%
TACTCCATGTAGGCTCTATT+TGG + chr8_4:10904751-10904770 Msa1313140:intron 40.0%
!! AAAAGTGCTATGGGTCTGTT+TGG - chr8_4:10905104-10905123 None:intergenic 40.0%
! AACAGACCCATAGCACTTTT+CGG + chr8_4:10905104-10905123 Msa1313140:intron 40.0%
! GTTGCTGTTGTTGAAGTCTA+TGG + chr8_4:10905277-10905296 Msa1313140:intron 40.0%
GTGAAAAGTCACGATTCTCT+TGG + chr8_4:10905467-10905486 Msa1313140:intron 40.0%
TTAGTGGAGTTCAGTGTTTG+TGG + chr8_4:10905771-10905790 Msa1313140:intron 40.0%
GTGTTATGCAATTGTACAGG+AGG + chr8_4:10905922-10905941 Msa1313140:intron 40.0%
GACGAGTCAAATACTAATCC+AGG + chr8_4:10905953-10905972 Msa1313140:CDS 40.0%
! TTTTGTTGCAGCTCAACAAC+TGG + chr8_4:10906108-10906127 Msa1313140:intron 40.0%
GTACGGCAGTTGACATTAAT+TGG - chr8_4:10906228-10906247 None:intergenic 40.0%
GTTTATTGCTTGAGCTGAAC+TGG + chr8_4:10906404-10906423 Msa1313140:intron 40.0%
ATCTTGAGTTCCATACCCAT+AGG - chr8_4:10906608-10906627 None:intergenic 40.0%
TGTGCATACTTGTCAGGTTA+TGG + chr8_4:10906632-10906651 Msa1313140:intron 40.0%
ATGCAAAACTTGTGTTCCAC+AGG + chr8_4:10906663-10906682 Msa1313140:intron 40.0%
CTCTTTAGCTGAGCTAACAA+GGG - chr8_4:10906722-10906741 None:intergenic 40.0%
ACTCTTTAGCTGAGCTAACA+AGG - chr8_4:10906723-10906742 None:intergenic 40.0%
TTGTTAGCTCAGCTAAAGAG+TGG + chr8_4:10906722-10906741 Msa1313140:CDS 40.0%
ACGACCATGTAACAAATGCT+CGG - chr8_4:10906906-10906925 None:intergenic 40.0%
GAAGCTTCATCGATGTTAGA+AGG + chr8_4:10907001-10907020 Msa1313140:intron 40.0%
AGGATTAAGGTTGCATGACA+TGG + chr8_4:10907021-10907040 Msa1313140:intron 40.0%
GACATGGCAGGATACTTATT+AGG + chr8_4:10907037-10907056 Msa1313140:intron 40.0%
! TTTCACTAGTCTAGGCACAT+TGG - chr8_4:10907063-10907082 None:intergenic 40.0%
ACTCACTAACCAATGAACCT+TGG - chr8_4:10907119-10907138 None:intergenic 40.0%
! ATTGTGTTAAACCTCTGGAG+TGG + chr8_4:10907369-10907388 Msa1313140:intron 40.0%
!! TTGTGTTAAACCTCTGGAGT+GGG + chr8_4:10907370-10907389 Msa1313140:intron 40.0%
TCATGATGCTCATCTACCAT+GGG - chr8_4:10907439-10907458 None:intergenic 40.0%
ATCATGATGCTCATCTACCA+TGG - chr8_4:10907440-10907459 None:intergenic 40.0%
ATACTACTAACCCGAACTAC+AGG - chr8_4:10907514-10907533 None:intergenic 40.0%
CACCACGTAAGAATAACAGA+AGG - chr8_4:10907568-10907587 None:intergenic 40.0%
!! TTCGTCTCTGAAATGTTGCT+TGG + chr8_4:10907648-10907667 Msa1313140:intron 40.0%
! TCTTAGATAGTGGTACCTCA+TGG + chr8_4:10907706-10907725 Msa1313140:intron 40.0%
!!! CTGTCGAAACATTTTTGGCA+TGG + chr8_4:10907740-10907759 Msa1313140:CDS 40.0%
!!! TCGAAACATTTTTGGCATGG+AGG + chr8_4:10907743-10907762 Msa1313140:CDS 40.0%
!!! CGAAACATTTTTGGCATGGA+GGG + chr8_4:10907744-10907763 Msa1313140:CDS 40.0%
TGTGACACCTGATTATCAGT+AGG + chr8_4:10907862-10907881 Msa1313140:intron 40.0%
GTGACACCTGATTATCAGTA+GGG + chr8_4:10907863-10907882 Msa1313140:intron 40.0%
! AGTAGGGCTAGGGATTTTAA+GGG + chr8_4:10907879-10907898 Msa1313140:intron 40.0%
AGCCTGCAATCATGACAAAT+TGG - chr8_4:10908190-10908209 None:intergenic 40.0%
TCGAAGGAAAAGAAACTCAC+TGG + chr8_4:10908235-10908254 Msa1313140:CDS 40.0%
!! AATTCTTGGTGCCTCCAAAA+TGG + chr8_4:10908423-10908442 Msa1313140:intron 40.0%
!! ATTCTTGGTGCCTCCAAAAT+GGG + chr8_4:10908424-10908443 Msa1313140:intron 40.0%
TAACCACACGTTAGACTAGT+TGG + chr8_4:10908622-10908641 Msa1313140:intron 40.0%
! TATCCAACTAGTCTAACGTG+TGG - chr8_4:10908628-10908647 None:intergenic 40.0%
! GGTATTGAGTTGTTATTGGG+TGG - chr8_4:10908947-10908966 None:intergenic 40.0%
!!! CAAGGTGAAACTTTTTTGGG+GGG - chr8_4:10909153-10909172 None:intergenic 40.0%
AAAAGTTTCACCTTGTCCTC+AGG + chr8_4:10909158-10909177 Msa1313140:intron 40.0%
AAAGTTTCACCTTGTCCTCA+GGG + chr8_4:10909159-10909178 Msa1313140:intron 40.0%
TGTGTGGTTACGAGGTAATT+TGG - chr8_4:10909267-10909286 None:intergenic 40.0%
CTGAAAACGCACAAAGAAGA+GGG - chr8_4:10909495-10909514 None:intergenic 40.0%
ACTGAAAACGCACAAAGAAG+AGG - chr8_4:10909496-10909515 None:intergenic 40.0%
GCATTTCAAGCCAGAATATC+AGG - chr8_4:10909669-10909688 None:intergenic 40.0%
TGACGTCATAACAGGTTAGT+TGG - chr8_4:10909722-10909741 None:intergenic 40.0%
! TGATACCCGTTGATAGAAAC+AGG + chr8_4:10909936-10909955 Msa1313140:intron 40.0%
AGAGAACCAAACTCTAACCA+TGG - chr8_4:10910114-10910133 None:intergenic 40.0%
! GATGATGATGAGGATTTCGA+AGG + chr8_4:10910547-10910566 Msa1313140:CDS 40.0%
!! TGCAATTTAACTTGCTCGCA+TGG - chr8_4:10910729-10910748 None:intergenic 40.0%
!! GCTTTCCTTGTTGTCTTTTG+AGG + chr8_4:10910778-10910797 Msa1313140:three_prime_UTR 40.0%
AACTCCCTCAAAAGACAACA+AGG - chr8_4:10910786-10910805 None:intergenic 40.0%
AAAACAAATCCCCCTCATGA+TGG - chr8_4:10910810-10910829 None:intergenic 40.0%
TGGCGTGTGACAATGTATTA+AGG + chr8_4:10910867-10910886 Msa1313140:three_prime_UTR 40.0%
TGAACACAAAGACTAATGGG+TGG + chr8_4:10910927-10910946 Msa1313140:three_prime_UTR 40.0%
AGGTGTAAAGGTCGAAGAAG+AGG - chr8_4:10904239-10904258 None:intergenic 45.0%
TCCAACTAACTCACCATGAC+AGG + chr8_4:10904306-10904325 Msa1313140:exon 45.0%
ACCTGTCATGGTGAGTTAGT+TGG - chr8_4:10904310-10904329 None:intergenic 45.0%
!! GCAAAACGGTGTCGTTTCAA+TGG - chr8_4:10904375-10904394 None:intergenic 45.0%
CTACGCGCAAGAACAAGAAA+TGG + chr8_4:10904432-10904451 Msa1313140:CDS 45.0%
!! TCCAAACTGGCCTTATGTCA+TGG + chr8_4:10905496-10905515 Msa1313140:intron 45.0%
TCCATGACATAAGGCCAGTT+TGG - chr8_4:10905500-10905519 None:intergenic 45.0%
GCAATTGTACAGGAGGAAGA+TGG + chr8_4:10905929-10905948 Msa1313140:intron 45.0%
GACCTGCTCACATTCAAAAG+CGG - chr8_4:10906175-10906194 None:intergenic 45.0%
! CCAAGATTTTCAGATGCCTG+TGG - chr8_4:10906682-10906701 None:intergenic 45.0%
CCACAGGCATCTGAAAATCT+TGG + chr8_4:10906679-10906698 Msa1313140:intron 45.0%
GGCATCTGAAAATCTTGGCA+TGG + chr8_4:10906684-10906703 Msa1313140:intron 45.0%
CTAAAGAGTGGTTGACTGAG+CGG + chr8_4:10906734-10906753 Msa1313140:CDS 45.0%
CGGTATTGTGAAGACTCAGA+TGG + chr8_4:10906754-10906773 Msa1313140:CDS 45.0%
TTAAGGTTGCATGACATGGC+AGG + chr8_4:10907025-10907044 Msa1313140:intron 45.0%
!! GGTTAGTGAGTGCTGAGTAA+TGG + chr8_4:10907128-10907147 Msa1313140:intron 45.0%
ATTGAAGTGCAATCCAACCC+TGG - chr8_4:10907351-10907370 None:intergenic 45.0%
!! TGTGTTAAACCTCTGGAGTG+GGG + chr8_4:10907371-10907390 Msa1313140:intron 45.0%
CGCCTTCTGTTATTCTTACG+TGG + chr8_4:10907563-10907582 Msa1313140:intron 45.0%
ACAGTAACTGCTTCTCCATG+AGG - chr8_4:10907724-10907743 None:intergenic 45.0%
!!! CATTTTTGGCATGGAGGGAA+AGG + chr8_4:10907749-10907768 Msa1313140:CDS 45.0%
GCAACAATAAGGGGCTTACT+TGG - chr8_4:10907803-10907822 None:intergenic 45.0%
ACCTGATTATCAGTAGGGCT+AGG + chr8_4:10907868-10907887 Msa1313140:intron 45.0%
CCTGATTATCAGTAGGGCTA+GGG + chr8_4:10907869-10907888 Msa1313140:intron 45.0%
! CAGTAGGGCTAGGGATTTTA+AGG + chr8_4:10907878-10907897 Msa1313140:intron 45.0%
TTTAAGGGCTTACGCATCTC+AGG + chr8_4:10907894-10907913 Msa1313140:intron 45.0%
TTAAGGGCTTACGCATCTCA+GGG + chr8_4:10907895-10907914 Msa1313140:intron 45.0%
GACAGTGGTTTGAAAGTGGA+AGG + chr8_4:10908260-10908279 Msa1313140:CDS 45.0%
GTGGTTTGAAAGTGGAAGGA+TGG + chr8_4:10908264-10908283 Msa1313140:CDS 45.0%
GGACGCATTAACCACTAGTA+TGG - chr8_4:10908549-10908568 None:intergenic 45.0%
TACTAGTGGTTAATGCGTCC+TGG + chr8_4:10908549-10908568 Msa1313140:intron 45.0%
!! GGCATAGTGGGTTATCTAGA+AGG - chr8_4:10908968-10908987 None:intergenic 45.0%
TCTAGATAACCCACTATGCC+TGG + chr8_4:10908968-10908987 Msa1313140:intron 45.0%
GAATAAATAGGGAAAGGGCC+AGG - chr8_4:10908989-10909008 None:intergenic 45.0%
GGTTGCATTAGTGTCTACCA+GGG + chr8_4:10909187-10909206 Msa1313140:intron 45.0%
AGAAGTAGAGTGACAGAGCA+TGG + chr8_4:10909220-10909239 Msa1313140:intron 45.0%
GTGGTTACGAGGTAATTTGG+TGG - chr8_4:10909264-10909283 None:intergenic 45.0%
! ACGACTTTTGTGTGGTTACG+AGG - chr8_4:10909275-10909294 None:intergenic 45.0%
CGTAACCACACAAAAGTCGT+TGG + chr8_4:10909275-10909294 Msa1313140:intron 45.0%
! CAGTTATAGGCTTTTGTCGC+TGG - chr8_4:10909305-10909324 None:intergenic 45.0%
CAGCGACAAAAGCCTATAAC+TGG + chr8_4:10909303-10909322 Msa1313140:intron 45.0%
CGACAAAAGCCTATAACTGG+CGG + chr8_4:10909306-10909325 Msa1313140:intron 45.0%
TCAGAGTCATTGAAGGCTCA+CGG - chr8_4:10909606-10909625 None:intergenic 45.0%
GGCAATACGTCCTGATATTC+TGG + chr8_4:10909656-10909675 Msa1313140:intron 45.0%
CGTAACTTCAACACCTCTGT+CGG + chr8_4:10909779-10909798 Msa1313140:intron 45.0%
AAAGAGGGAAACATCAGAGG+AGG - chr8_4:10909810-10909829 None:intergenic 45.0%
GGAAAAGAGGGAAACATCAG+AGG - chr8_4:10909813-10909832 None:intergenic 45.0%
GAGGAACGTTTCGGAAAAGA+GGG - chr8_4:10909825-10909844 None:intergenic 45.0%
TGAGGAACGTTTCGGAAAAG+AGG - chr8_4:10909826-10909845 None:intergenic 45.0%
! GCTAGCATTGAGGAACGTTT+CGG - chr8_4:10909834-10909853 None:intergenic 45.0%
TTTCGGCCATGGTTAGAGTT+TGG + chr8_4:10910105-10910124 Msa1313140:intron 45.0%
AGCTGTTGTCACGGAAGATT+TGG + chr8_4:10910495-10910514 Msa1313140:CDS 45.0%
TGTCACGGAAGATTTGGATG+AGG + chr8_4:10910501-10910520 Msa1313140:CDS 45.0%
AGATTTGGATGAGGAGGATG+AGG + chr8_4:10910510-10910529 Msa1313140:CDS 45.0%
TTGAGGGAGTTTCCATCATG+AGG + chr8_4:10910795-10910814 Msa1313140:three_prime_UTR 45.0%
TGAGGGAGTTTCCATCATGA+GGG + chr8_4:10910796-10910815 Msa1313140:three_prime_UTR 45.0%
!!! TTTTATTAAAATAAATAGAT+GGG - chr8_4:10904514-10904533 None:intergenic 5.0%
!!! TTTTTATTAAAATAAATAGA+TGG - chr8_4:10904515-10904534 None:intergenic 5.0%
TTCAAAAGCGGAGGTTCGTC+TGG - chr8_4:10906163-10906182 None:intergenic 50.0%
CTGCTCACATTCAAAAGCGG+AGG - chr8_4:10906172-10906191 None:intergenic 50.0%
!! CTCCGCTTTTGAATGTGAGC+AGG + chr8_4:10906170-10906189 Msa1313140:CDS 50.0%
TCATGCTGCGCAATGACCTA+TGG + chr8_4:10906589-10906608 Msa1313140:intron 50.0%
CATGCTGCGCAATGACCTAT+GGG + chr8_4:10906590-10906609 Msa1313140:intron 50.0%
TGCGCAATGACCTATGGGTA+TGG + chr8_4:10906595-10906614 Msa1313140:intron 50.0%
! TGGTGATGCTGAAGCAGAAG+AGG + chr8_4:10906774-10906793 Msa1313140:CDS 50.0%
TGATGCTGAAGCAGAAGAGG+CGG + chr8_4:10906777-10906796 Msa1313140:CDS 50.0%
TCCAGTTATTGCCATGCCCA+TGG + chr8_4:10907420-10907439 Msa1313140:intron 50.0%
ACCATGGGCATGGCAATAAC+TGG - chr8_4:10907424-10907443 None:intergenic 50.0%
ATGCTCATCTACCATGGGCA+TGG - chr8_4:10907434-10907453 None:intergenic 50.0%
CCCTAGCCCTACTGATAATC+AGG - chr8_4:10907872-10907891 None:intergenic 50.0%
GAAGTAGCAAGCACAGACTC+TGG - chr8_4:10908217-10908236 None:intergenic 50.0%
! GTCTGTGCTTGCTACTTCGA+AGG + chr8_4:10908219-10908238 Msa1313140:CDS 50.0%
AGAAACTCACTGGCAGACAG+TGG + chr8_4:10908245-10908264 Msa1313140:CDS 50.0%
GGCAGACAGTGGTTTGAAAG+TGG + chr8_4:10908256-10908275 Msa1313140:CDS 50.0%
TTGGCGTGCATGCAACATTC+TGG - chr8_4:10908848-10908867 None:intergenic 50.0%
! GAGTTGTTATTGGGTGGGAG+AGG - chr8_4:10908941-10908960 None:intergenic 50.0%
TAATGCAACCCTTCACCCTG+AGG - chr8_4:10909177-10909196 None:intergenic 50.0%
GGGTTGCATTAGTGTCTACC+AGG + chr8_4:10909186-10909205 Msa1313140:intron 50.0%
! GAGCACCAACGACTTTTGTG+TGG - chr8_4:10909283-10909302 None:intergenic 50.0%
AGCCTATAACTGGCGGAGAA+TGG + chr8_4:10909313-10909332 Msa1313140:intron 50.0%
GTCCATTCTCCGCCAGTTAT+AGG - chr8_4:10909318-10909337 None:intergenic 50.0%
! TAACTGGCGGAGAATGGACT+CGG + chr8_4:10909319-10909338 Msa1313140:intron 50.0%
! GAATGGACTCGGCAACGAAA+TGG + chr8_4:10909330-10909349 Msa1313140:intron 50.0%
ATGAAGGAGTCCCTTCCTGT+GGG - chr8_4:10909379-10909398 None:intergenic 50.0%
GTGTTCACCGATAGTTGCAC+TGG - chr8_4:10909751-10909770 None:intergenic 50.0%
!! GAGGTGTTGAAGTTACGCAG+AGG - chr8_4:10909776-10909795 None:intergenic 50.0%
!! CATAGTGGGTGCTAGCATTG+AGG - chr8_4:10909844-10909863 None:intergenic 50.0%
CATAGACATGGTTTCGGCCA+TGG + chr8_4:10910094-10910113 Msa1313140:intron 50.0%
! GAAAGGTGCAGCTGTTGTCA+CGG + chr8_4:10910486-10910505 Msa1313140:intron 50.0%
CACGGAAGATTTGGATGAGG+AGG + chr8_4:10910504-10910523 Msa1313140:CDS 50.0%
TGCTCGCATGGAAGAATGTG+TGG - chr8_4:10910717-10910736 None:intergenic 50.0%
GAGGGAGTTTCCATCATGAG+GGG + chr8_4:10910797-10910816 Msa1313140:three_prime_UTR 50.0%
AGGGAGTTTCCATCATGAGG+GGG + chr8_4:10910798-10910817 Msa1313140:three_prime_UTR 50.0%
!! GTGTGGTTAGGGGTGTTCCA+GGG + chr8_4:10907331-10907350 Msa1313140:intron 55.0%
TCACCTTGTCCTCAGGGTGA+AGG + chr8_4:10909165-10909184 Msa1313140:intron 55.0%
CACCTTGTCCTCAGGGTGAA+GGG + chr8_4:10909166-10909185 Msa1313140:intron 55.0%
AACCCTTCACCCTGAGGACA+AGG - chr8_4:10909171-10909190 None:intergenic 55.0%
TGACAGAGCATGGCAGCAGT+AGG + chr8_4:10909230-10909249 Msa1313140:intron 55.0%
TGGACTCGGCAACGAAATGG+CGG + chr8_4:10909333-10909352 Msa1313140:intron 55.0%
GCAACGAAATGGCGGTTGGA+TGG + chr8_4:10909341-10909360 Msa1313140:intron 55.0%
TGGCGGTTGGATGGACACTA+TGG + chr8_4:10909350-10909369 Msa1313140:intron 55.0%
ACTATGGTGCCCCACAGGAA+GGG + chr8_4:10909366-10909385 Msa1313140:intron 55.0%
TGAAGGAGTCCCTTCCTGTG+GGG - chr8_4:10909378-10909397 None:intergenic 55.0%
GATGAAGGAGTCCCTTCCTG+TGG - chr8_4:10909380-10909399 None:intergenic 55.0%
GCTCACGGTTCATGCGATGA+AGG - chr8_4:10909591-10909610 None:intergenic 55.0%
AGAGGAGGAGAAACCGACAG+AGG - chr8_4:10909795-10909814 None:intergenic 55.0%
!! GGTGTGGTTAGGGGTGTTCC+AGG + chr8_4:10907330-10907349 Msa1313140:intron 60.0%
!! GGTTAGGGGTGTTCCAGGGT+TGG + chr8_4:10907335-10907354 Msa1313140:intron 60.0%
ACACACACACCCCACTCCAG+AGG - chr8_4:10907383-10907402 None:intergenic 60.0%
GGGAAAGGGCCAGGCATAGT+GGG - chr8_4:10908980-10908999 None:intergenic 60.0%
AGGGAAAGGGCCAGGCATAG+TGG - chr8_4:10908981-10909000 None:intergenic 60.0%
CTCGGCAACGAAATGGCGGT+TGG + chr8_4:10909337-10909356 Msa1313140:intron 60.0%
TGGACACTATGGTGCCCCAC+AGG + chr8_4:10909361-10909380 Msa1313140:intron 60.0%
CACTATGGTGCCCCACAGGA+AGG + chr8_4:10909365-10909384 Msa1313140:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 10904175 10911047 10904175 ID=Msa1313140;Name=Msa1313140
chr8_4 mRNA 10904175 10911047 10904175 ID=Msa1313140-mRNA-1;Parent=Msa1313140;Name=Msa1313140-mRNA-1;_AED=0.13;_eAED=0.13;_QI=146|1|1|1|1|1|11|305|254
chr8_4 exon 10904175 10904327 10904175 ID=Msa1313140-mRNA-1:exon:4029;Parent=Msa1313140-mRNA-1
chr8_4 exon 10904431 10904496 10904431 ID=Msa1313140-mRNA-1:exon:4030;Parent=Msa1313140-mRNA-1
chr8_4 exon 10904597 10904664 10904597 ID=Msa1313140-mRNA-1:exon:4031;Parent=Msa1313140-mRNA-1
chr8_4 exon 10905941 10905974 10905941 ID=Msa1313140-mRNA-1:exon:4032;Parent=Msa1313140-mRNA-1
chr8_4 exon 10906119 10906191 10906119 ID=Msa1313140-mRNA-1:exon:4033;Parent=Msa1313140-mRNA-1
chr8_4 exon 10906318 10906375 10906318 ID=Msa1313140-mRNA-1:exon:4034;Parent=Msa1313140-mRNA-1
chr8_4 exon 10906685 10906810 10906685 ID=Msa1313140-mRNA-1:exon:4035;Parent=Msa1313140-mRNA-1
chr8_4 exon 10907712 10907803 10907712 ID=Msa1313140-mRNA-1:exon:4036;Parent=Msa1313140-mRNA-1
chr8_4 exon 10908207 10908285 10908207 ID=Msa1313140-mRNA-1:exon:4037;Parent=Msa1313140-mRNA-1
chr8_4 exon 10910487 10910568 10910487 ID=Msa1313140-mRNA-1:exon:4038;Parent=Msa1313140-mRNA-1
chr8_4 exon 10910663 10911047 10910663 ID=Msa1313140-mRNA-1:exon:4039;Parent=Msa1313140-mRNA-1
chr8_4 five_prime_UTR 10904175 10904320 10904175 ID=Msa1313140-mRNA-1:five_prime_utr;Parent=Msa1313140-mRNA-1
chr8_4 CDS 10904321 10904327 10904321 ID=Msa1313140-mRNA-1:cds;Parent=Msa1313140-mRNA-1
chr8_4 CDS 10904431 10904496 10904431 ID=Msa1313140-mRNA-1:cds;Parent=Msa1313140-mRNA-1
chr8_4 CDS 10904597 10904664 10904597 ID=Msa1313140-mRNA-1:cds;Parent=Msa1313140-mRNA-1
chr8_4 CDS 10905941 10905974 10905941 ID=Msa1313140-mRNA-1:cds;Parent=Msa1313140-mRNA-1
chr8_4 CDS 10906119 10906191 10906119 ID=Msa1313140-mRNA-1:cds;Parent=Msa1313140-mRNA-1
chr8_4 CDS 10906318 10906375 10906318 ID=Msa1313140-mRNA-1:cds;Parent=Msa1313140-mRNA-1
chr8_4 CDS 10906685 10906810 10906685 ID=Msa1313140-mRNA-1:cds;Parent=Msa1313140-mRNA-1
chr8_4 CDS 10907712 10907803 10907712 ID=Msa1313140-mRNA-1:cds;Parent=Msa1313140-mRNA-1
chr8_4 CDS 10908207 10908285 10908207 ID=Msa1313140-mRNA-1:cds;Parent=Msa1313140-mRNA-1
chr8_4 CDS 10910487 10910568 10910487 ID=Msa1313140-mRNA-1:cds;Parent=Msa1313140-mRNA-1
chr8_4 CDS 10910663 10910742 10910663 ID=Msa1313140-mRNA-1:cds;Parent=Msa1313140-mRNA-1
chr8_4 three_prime_UTR 10910743 10911047 10910743 ID=Msa1313140-mRNA-1:three_prime_utr;Parent=Msa1313140-mRNA-1
Gene Sequence

>Msa1313140

ATGACAGACTACGCGCAAGAACAAGAAATGGAGATTGAAGCATTGGAAGCTATACTTATGGATGAATTCAAAGAAATACATTCTGGTGAAAGTGGTTTAAGCACTTCCAATAGGTGCTTCCAGATTAAAATCACTGCTCAGGAGGAAGATGGAGACGAGTCAAATACTAATCCAGCTCAACAACTGGCTTTGATCTTCGCGCACACAGAAAAATATCCAGACGAACCTCCGCTTTTGAATGTGAGCAGTTTGCAAGGAATATCGTCTGAAGATTTAAGGATTTTGAAAGACAAACTTCAACAAGAGGCATCTGAAAATCTTGGCATGGCTATGATTTACACCCTTGTTAGCTCAGCTAAAGAGTGGTTGACTGAGCGGTATTGTGAAGACTCAGATGGTGATGCTGAAGCAGAAGAGGCGGCCAAAGAAGATATAGTGGTACCTCATGGAGAAGCAGTTACTGTCGAAACATTTTTGGCATGGAGGGAAAGGTTTGAAGCTGAACTAGCACTTGAACGAGCCAAGCTAATGCCAGAGTCTGTGCTTGCTACTTCGAAGGAAAAGAAACTCACTGGCAGACAGTGGTTTGAAAGTGGAAGGATGAAAGGTGCAGCTGTTGTCACGGAAGATTTGGATGAGGAGGATGAGGAAGACATTGACTTTGATGATGATGAGGATTTCGAAGATGATGAAGATGATATGCTTGAGCATTATCTAGCTGAAAAATCTGATTCATCCACACATTCTTCCATGCGAGCAAGTTAA

Protein sequence

>Msa1313140

MTDYAQEQEMEIEALEAILMDEFKEIHSGESGLSTSNRCFQIKITAQEEDGDESNTNPAQQLALIFAHTEKYPDEPPLLNVSSLQGISSEDLRILKDKLQQEASENLGMAMIYTLVSSAKEWLTERYCEDSDGDAEAEEAAKEDIVVPHGEAVTVETFLAWRERFEAELALERAKLMPESVLATSKEKKLTGRQWFESGRMKGAAVVTEDLDEEDEEDIDFDDDEDFEDDEDDMLEHYLAEKSDSSTHSSMRAS*