AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1423870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1423870 MtrunA17_Chr8g0341531 99.213 254 2 0 1 254 1 254 0.0 510
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1423870 AT1G51730.1 70.445 247 71 2 1 246 1 246 8.09e-106 306

Find 66 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATATCGTCTGAAGATTTA+AGG 0.204105 tig0025581:+36261 Msa1423870:CDS
TGGCGTGTGACAATGTATTA+AGG 0.299410 tig0025581:+40803 Msa1423870:three_prime_UTR
AGGCATTCTTACATCTTCTT+TGG 0.306333 tig0025581:-36735 None:intergenic
TATATGAACACAAAGACTAA+TGG 0.354098 tig0025581:+40859 Msa1423870:three_prime_UTR
TTAGTTGGATTGGATTGAAT+TGG 0.375284 tig0025581:-34227 None:intergenic
TTTAATCTGGAAGCACCTAT+TGG 0.387103 tig0025581:-34565 None:intergenic
TTCATGTTAGAAATACATTC+TGG 0.390456 tig0025581:+34522 Msa1423870:intron
CAGTCAGTGATTGATTGATT+AGG 0.390664 tig0025581:+34147 Msa1423870:five_prime_UTR
AGCATTGGAAGCTATACTTA+TGG 0.397259 tig0025581:+34397 Msa1423870:CDS
AGCTGTTGTCACGGAAGATT+TGG 0.403140 tig0025581:+40431 Msa1423870:CDS
GTGGTTTAAGCACTTCCAAT+AGG 0.412630 tig0025581:+34550 Msa1423870:CDS
TTCAAAAGCGGAGGTTCGTC+TGG 0.413109 tig0025581:-36095 None:intergenic
ATATGAACACAAAGACTAAT+GGG 0.415701 tig0025581:+40860 Msa1423870:three_prime_UTR
TCATGGTGAGTTAGTTGGAT+TGG 0.430928 tig0025581:-34237 None:intergenic
ACCTGTCATGGTGAGTTAGT+TGG 0.434602 tig0025581:-34242 None:intergenic
CCACAGGCATCTGAAAATCT+TGG 0.452799 tig0025581:+36614 Msa1423870:intron
AGAAATGGAGATTGAAGCAT+TGG 0.464035 tig0025581:+34382 Msa1423870:CDS
TTGAGGGAGTTTCCATCATG+AGG 0.477172 tig0025581:+40731 Msa1423870:three_prime_UTR
CTACGCGCAAGAACAAGAAA+TGG 0.480177 tig0025581:+34367 Msa1423870:CDS
AGATTTGGATGAGGAGGATG+AGG 0.480488 tig0025581:+40446 Msa1423870:CDS
CCAGATTAAAATCACTGCTC+AGG 0.484543 tig0025581:+34578 Msa1423870:CDS
TGCAATTTAACTTGCTCGCA+TGG 0.486262 tig0025581:-40662 None:intergenic
GAAATACATTCTGGTGAAAG+TGG 0.495312 tig0025581:+34531 Msa1423870:intron
ACTATACAAAACAGTTTGCA+AGG 0.496821 tig0025581:+36239 Msa1423870:intron
TCCAACTAACTCACCATGAC+AGG 0.510196 tig0025581:+34241 Msa1423870:exon
TGTATTCATTCATTCATCCC+TGG 0.514509 tig0025581:-34112 None:intergenic
GACGAGTCAAATACTAATCC+AGG 0.514669 tig0025581:+35888 Msa1423870:CDS
GAAAGACAAACTTCAACAAG+AGG 0.517470 tig0025581:+36289 Msa1423870:CDS
ACTCTTTAGCTGAGCTAACA+AGG 0.518163 tig0025581:-36655 None:intergenic
ATACTTATGGATGAATTCAA+AGG 0.522807 tig0025581:+34410 Msa1423870:CDS
GATGATGATGAGGATTTCGA+AGG 0.528804 tig0025581:+40483 Msa1423870:CDS
GGCAGACAGTGGTTTGAAAG+TGG 0.536978 tig0025581:+38192 Msa1423870:CDS
TTAAAAGGTGTATTTGGCCA+GGG 0.542021 tig0025581:+34095 None:intergenic
GCAATTGTACAGGAGGAAGA+TGG 0.544792 tig0025581:+35864 Msa1423870:intron
GAAGTAGCAAGCACAGACTC+TGG 0.546961 tig0025581:-38150 None:intergenic
CACGGAAGATTTGGATGAGG+AGG 0.550207 tig0025581:+40440 Msa1423870:CDS
GACAGTGGTTTGAAAGTGGA+AGG 0.561439 tig0025581:+38196 Msa1423870:CDS
TGAGGGAGTTTCCATCATGA+GGG 0.562768 tig0025581:+40732 Msa1423870:three_prime_UTR
AGATTGAAGTGAAGGTGTAA+AGG 0.564919 tig0025581:-34183 None:intergenic
CATTGACTTTGATGATGATG+AGG 0.578083 tig0025581:+40473 Msa1423870:CDS
GTCTGTGCTTGCTACTTCGA+AGG 0.579213 tig0025581:+38155 Msa1423870:CDS
TCTTAGATAGTGGTACCTCA+TGG 0.579437 tig0025581:+37642 Msa1423870:intron
TGGTGATGCTGAAGCAGAAG+AGG 0.584742 tig0025581:+36709 Msa1423870:CDS
GGCATCTGAAAATCTTGGCA+TGG 0.589383 tig0025581:+36619 Msa1423870:intron
TCGAAGGAAAAGAAACTCAC+TGG 0.592415 tig0025581:+38171 Msa1423870:CDS
GAAAGGTGCAGCTGTTGTCA+CGG 0.599442 tig0025581:+40422 Msa1423870:intron
GTGGTTTGAAAGTGGAAGGA+TGG 0.600163 tig0025581:+38200 Msa1423870:CDS
AGGGAGTTTCCATCATGAGG+GGG 0.611209 tig0025581:+40734 Msa1423870:three_prime_UTR
TGCTCGCATGGAAGAATGTG+TGG 0.612004 tig0025581:-40650 None:intergenic
AAATTTGGGAATACCTGTCA+TGG 0.615517 tig0025581:-34254 None:intergenic
CTAAAGAGTGGTTGACTGAG+CGG 0.616560 tig0025581:+36669 Msa1423870:CDS
TTGTTAGCTCAGCTAAAGAG+TGG 0.621613 tig0025581:+36657 Msa1423870:CDS
GAGGGAGTTTCCATCATGAG+GGG 0.622813 tig0025581:+40733 Msa1423870:three_prime_UTR
AGGTGTAAAGGTCGAAGAAG+AGG 0.625268 tig0025581:-34171 None:intergenic
AAGTGTAAAGATTGAAGTGA+AGG 0.625529 tig0025581:-34191 None:intergenic
TGTCACGGAAGATTTGGATG+AGG 0.632911 tig0025581:+40437 Msa1423870:CDS
CTGCTCACATTCAAAAGCGG+AGG 0.633056 tig0025581:-36104 None:intergenic
GACCTGCTCACATTCAAAAG+CGG 0.648261 tig0025581:-36107 None:intergenic
ACAGTAACTGCTTCTCCATG+AGG 0.657064 tig0025581:-37657 None:intergenic
AACTCCCTCAAAAGACAACA+AGG 0.666325 tig0025581:-40719 None:intergenic
CTCTTTAGCTGAGCTAACAA+GGG 0.666399 tig0025581:-36654 None:intergenic
TGATGCTGAAGCAGAAGAGG+CGG 0.674289 tig0025581:+36712 Msa1423870:CDS
AGAAACTCACTGGCAGACAG+TGG 0.676924 tig0025581:+38181 Msa1423870:CDS
CGGTATTGTGAAGACTCAGA+TGG 0.683666 tig0025581:+36689 Msa1423870:CDS
TGAACACAAAGACTAATGGG+TGG 0.687410 tig0025581:+40863 Msa1423870:three_prime_UTR
GGATGAATGAATGAATACAG+AGG 0.736890 tig0025581:+34116 Msa1423870:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACATAATTTATATAACT+TGG - tig0025581:35274-35293 None:intergenic 10.0%
!! TAAAAATTGAGATAATTATT+AGG + tig0025581:38387-38406 Msa1423870:intron 10.0%
!!! TTGTTTTATAATTCAATAAA+TGG - tig0025581:40198-40217 None:intergenic 10.0%
!! ACAAAATAGAATATAAATTA+AGG - tig0025581:40526-40545 None:intergenic 10.0%
!!! ACTATTTTTATTTCTCAATT+TGG + tig0025581:34471-34490 Msa1423870:intron 15.0%
!!! TATTTATGTATTTAAGTTCT+TGG + tig0025581:34631-34650 Msa1423870:intron 15.0%
!!! ATTTATGTATTTAAGTTCTT+GGG + tig0025581:34632-34651 Msa1423870:intron 15.0%
!!! TATTTTTTTAATCAAATCTG+AGG + tig0025581:35101-35120 Msa1423870:intron 15.0%
!! TGAATTTCAATGAAATTATT+TGG + tig0025581:35629-35648 Msa1423870:intron 15.0%
!! AAGAAAATAATATATCAAAG+AGG - tig0025581:35920-35939 None:intergenic 15.0%
!! ACTAGTAGATAATATATATA+AGG + tig0025581:37244-37263 Msa1423870:intron 15.0%
!! TGTTAAAAACAAAAGAATTT+GGG - tig0025581:37963-37982 None:intergenic 15.0%
!! TTGTTAAAAACAAAAGAATT+TGG - tig0025581:37964-37983 None:intergenic 15.0%
!!! TAGTTGATAAAAAAAATTCT+TGG + tig0025581:38345-38364 Msa1423870:intron 15.0%
!!! TTGATAGTAATTTTTGAAAT+CGG + tig0025581:38751-38770 Msa1423870:intron 15.0%
!! GTTTGTATTAAGAATAAATA+GGG - tig0025581:38936-38955 None:intergenic 15.0%
!! TGTTTGTATTAAGAATAAAT+AGG - tig0025581:38937-38956 None:intergenic 15.0%
!!! TTATTCATTAATTAAGTTGT+CGG - tig0025581:38967-38986 None:intergenic 15.0%
!!! AAAGTCAATTTTAATATTCT+CGG + tig0025581:39019-39038 Msa1423870:intron 15.0%
!!! ATTTGTTTTTGTTATCATTA+AGG + tig0025581:40757-40776 Msa1423870:three_prime_UTR 15.0%
!! TAATGATGAAAAACCAAAAA+GGG - tig0025581:34336-34355 None:intergenic 20.0%
!! ATAATGATGAAAAACCAAAA+AGG - tig0025581:34337-34356 None:intergenic 20.0%
!! TACATAAATACACAAAAAGA+AGG - tig0025581:34621-34640 None:intergenic 20.0%
!! CTATTTGGTAAAATAATTTG+CGG + tig0025581:34701-34720 Msa1423870:intron 20.0%
!!! TTTTTTCAATTAAGATAACG+AGG + tig0025581:34825-34844 Msa1423870:intron 20.0%
!!! TTTTTCAATTAAGATAACGA+GGG + tig0025581:34826-34845 Msa1423870:intron 20.0%
!! TGTTTCTTCACTTATAAAAA+AGG + tig0025581:35293-35312 Msa1423870:intron 20.0%
!! TATAAAGTTGTAGATGTTTA+TGG + tig0025581:35320-35339 Msa1423870:intron 20.0%
!! ATAATGAAAAGTGAAAACAA+TGG - tig0025581:35562-35581 None:intergenic 20.0%
!! CATAACACAGATAAATATAA+GGG - tig0025581:35845-35864 None:intergenic 20.0%
!! TATATTATCAACCGTATATT+AGG - tig0025581:36004-36023 None:intergenic 20.0%
!!! TTGATAATATACAAAAGACA+TGG + tig0025581:36013-36032 Msa1423870:intron 20.0%
!!! TATATATTACTGTTGTTTGT+AGG + tig0025581:36136-36155 Msa1423870:intron 20.0%
!! ATGAAACAAAAACATATGTA+CGG - tig0025581:36180-36199 None:intergenic 20.0%
!! ATAAACAGAAAAACTGTATA+TGG - tig0025581:36325-36344 None:intergenic 20.0%
!! ATTAAGAAGTCTTTCAATTT+GGG - tig0025581:36394-36413 None:intergenic 20.0%
!! CAAATTGAAAGAATTCTTAA+TGG + tig0025581:36451-36470 Msa1423870:intron 20.0%
!! CTATATTCTTTAGTCATATA+TGG - tig0025581:36870-36889 None:intergenic 20.0%
!! AGAAGATTTATAAAAGATGA+GGG - tig0025581:36916-36935 None:intergenic 20.0%
!! TTGGATATGAAGTTTAATAA+GGG - tig0025581:37035-37054 None:intergenic 20.0%
!! TAGATAATATATATAAGGTG+TGG + tig0025581:37249-37268 Msa1423870:intron 20.0%
!! AATAGTCAGTGATATTTAAA+TGG + tig0025581:38005-38024 Msa1423870:intron 20.0%
!! TGTTAAAAACAAAAGGATTT+GGG - tig0025581:38048-38067 None:intergenic 20.0%
!! TTGTTAAAAACAAAAGGATT+TGG - tig0025581:38049-38068 None:intergenic 20.0%
!!! ACATAGAAAATGTCATTTTA+AGG - tig0025581:38259-38278 None:intergenic 20.0%
!! ATCTATGATTCAGAAAATTA+AGG + tig0025581:38593-38612 Msa1423870:intron 20.0%
!! TCTATGATTCAGAAAATTAA+GGG + tig0025581:38594-38613 Msa1423870:intron 20.0%
!! CAGAAAAAGAATAAAAACAA+AGG + tig0025581:38702-38721 Msa1423870:intron 20.0%
!! ATTAAGAATAAATAGGGAAA+GGG - tig0025581:38930-38949 None:intergenic 20.0%
!! TATTAAGAATAAATAGGGAA+AGG - tig0025581:38931-38950 None:intergenic 20.0%
!!! GAGAATATTAAAATTGACTT+TGG - tig0025581:39020-39039 None:intergenic 20.0%
!! TCATTAAGAGACATTATAAT+AGG - tig0025581:39050-39069 None:intergenic 20.0%
!!! ATGTATTCTATCTTTTGATT+GGG - tig0025581:39963-39982 None:intergenic 20.0%
!! TTTAGACATTATAATAGGAT+GGG - tig0025581:40252-40271 None:intergenic 20.0%
!! ATTTAGACATTATAATAGGA+TGG - tig0025581:40253-40272 None:intergenic 20.0%
!! TCTCATTTAGACATTATAAT+AGG - tig0025581:40257-40276 None:intergenic 20.0%
!! TATTATAATGTCTAAATGAG+AGG + tig0025581:40256-40275 Msa1423870:intron 20.0%
! AGAGTTGAAGATTGAAATTT+GGG - tig0025581:34271-34290 None:intergenic 25.0%
! TCAATGGAATAGAATGAAAT+TGG - tig0025581:34294-34313 None:intergenic 25.0%
! ATACTTATGGATGAATTCAA+AGG + tig0025581:34410-34429 Msa1423870:CDS 25.0%
! TTCATGTTAGAAATACATTC+TGG + tig0025581:34522-34541 Msa1423870:intron 25.0%
!!! ATGATTTTTTTACTCCATGT+AGG + tig0025581:34676-34695 Msa1423870:intron 25.0%
! ATAGTGTTTGGTAAAATTAG+CGG + tig0025581:34743-34762 Msa1423870:intron 25.0%
!!! CAACAACATAACTTTTTCTT+TGG - tig0025581:35193-35212 None:intergenic 25.0%
!!! TGAATTAGCATTTTAGCTAA+TGG + tig0025581:35242-35261 Msa1423870:intron 25.0%
!!! GAATTAGCATTTTAGCTAAT+GGG + tig0025581:35243-35262 Msa1423870:intron 25.0%
! TTATATCAGTCAAAGAAAGA+GGG - tig0025581:35763-35782 None:intergenic 25.0%
! ATTATATCAGTCAAAGAAAG+AGG - tig0025581:35764-35783 None:intergenic 25.0%
! GCATAACACAGATAAATATA+AGG - tig0025581:35846-35865 None:intergenic 25.0%
!! GTAGTTTTCTTCCTAATATA+CGG + tig0025581:35990-36009 Msa1423870:intron 25.0%
! CATTAAGAAGTCTTTCAATT+TGG - tig0025581:36395-36414 None:intergenic 25.0%
! CAAATTGAAAGACTTCTTAA+TGG + tig0025581:36393-36412 Msa1423870:intron 25.0%
! TGGAAACATTGTATTCAAAA+TGG - tig0025581:36477-36496 None:intergenic 25.0%
! TATGCATATATACATAAAGG+TGG - tig0025581:36497-36516 None:intergenic 25.0%
! GCTTATGCATATATACATAA+AGG - tig0025581:36500-36519 None:intergenic 25.0%
! AAACTATCATTGTATACTGT+AGG - tig0025581:36758-36777 None:intergenic 25.0%
! GAAGATTTATAAAAGATGAG+GGG - tig0025581:36915-36934 None:intergenic 25.0%
! CAGAAGATTTATAAAAGATG+AGG - tig0025581:36917-36936 None:intergenic 25.0%
! CTTGGATATGAAGTTTAATA+AGG - tig0025581:37036-37055 None:intergenic 25.0%
! CTTATTAAACTTCATATCCA+AGG + tig0025581:37034-37053 Msa1423870:intron 25.0%
!! TGAATCTAGATTTTATGCTT+TGG + tig0025581:37114-37133 Msa1423870:intron 25.0%
!! TTGTCTTTGAAAACAAAGTT+GGG - tig0025581:37189-37208 None:intergenic 25.0%
!! ATTGTCTTTGAAAACAAAGT+TGG - tig0025581:37190-37209 None:intergenic 25.0%
!! ACTAGTCAACTTTTGTTAAA+GGG - tig0025581:37230-37249 None:intergenic 25.0%
!! TACTAGTCAACTTTTGTTAA+AGG - tig0025581:37231-37250 None:intergenic 25.0%
! AATATATATAAGGTGTGGTT+AGG + tig0025581:37254-37273 Msa1423870:intron 25.0%
! ATATATATAAGGTGTGGTTA+GGG + tig0025581:37255-37274 Msa1423870:intron 25.0%
! TAAAGTATAATCCTGTAGTT+CGG + tig0025581:37435-37454 Msa1423870:intron 25.0%
! ACATAGTCAGTGATATTTAA+AGG + tig0025581:37919-37938 Msa1423870:intron 25.0%
! CATAGTCAGTGATATTTAAA+GGG + tig0025581:37920-37939 Msa1423870:intron 25.0%
! AAAAACAAAAGAATTTGGGT+TGG - tig0025581:37959-37978 None:intergenic 25.0%
!! CTTCACTTGTTAAAAACAAA+AGG - tig0025581:37970-37989 None:intergenic 25.0%
! CATCAAGGTATAAATAGTAA+GGG - tig0025581:38236-38255 None:intergenic 25.0%
!! CAATTTTTAATGTCCCATTT+TGG - tig0025581:38376-38395 None:intergenic 25.0%
!! ATGATAATTTTATAGCTCAC+AGG - tig0025581:38425-38444 None:intergenic 25.0%
! CTATGATTCAGAAAATTAAG+GGG + tig0025581:38595-38614 Msa1423870:intron 25.0%
! TGAAACTTCACTGTAATTAT+TGG - tig0025581:38803-38822 None:intergenic 25.0%
! TAAGAGACATTATAATAGGA+GGG - tig0025581:39046-39065 None:intergenic 25.0%
! TTAAGAGACATTATAATAGG+AGG - tig0025581:39047-39066 None:intergenic 25.0%
! CAAAAATGTAGAAAAGATGA+AGG - tig0025581:39331-39350 None:intergenic 25.0%
! AGAGATCAAAAGAAAAATGA+AGG - tig0025581:39376-39395 None:intergenic 25.0%
!! AAACACTAAAACTCCATTTT+TGG + tig0025581:39816-39835 Msa1423870:intron 25.0%
! TGTACCAAAAACTTCAAAAT+CGG + tig0025581:39844-39863 Msa1423870:intron 25.0%
!! CATGTATTCTATCTTTTGAT+TGG - tig0025581:39964-39983 None:intergenic 25.0%
! TTCAGAATTGAATATTACAC+AGG + tig0025581:39996-40015 Msa1423870:intron 25.0%
!! GATATTATTAAAACTGGCTT+TGG - tig0025581:40227-40246 None:intergenic 25.0%
! TTTAACAAAGAATTGTTGAG+AGG - tig0025581:40306-40325 None:intergenic 25.0%
! ATCATTACATGTAAACTTTC+TGG - tig0025581:40549-40568 None:intergenic 25.0%
!!! TACATGTTTTATCTGTTTCT+TGG + tig0025581:40573-40592 Msa1423870:intron 25.0%
!! CGTTTCTATTTTGTAGTTAT+CGG + tig0025581:40828-40847 Msa1423870:three_prime_UTR 25.0%
! TATATGAACACAAAGACTAA+TGG + tig0025581:40859-40878 Msa1423870:three_prime_UTR 25.0%
! ATATGAACACAAAGACTAAT+GGG + tig0025581:40860-40879 Msa1423870:three_prime_UTR 25.0%
AAGTGTAAAGATTGAAGTGA+AGG - tig0025581:34194-34213 None:intergenic 30.0%
! TTAGTTGGATTGGATTGAAT+TGG - tig0025581:34230-34249 None:intergenic 30.0%
GAGAGTTGAAGATTGAAATT+TGG - tig0025581:34272-34291 None:intergenic 30.0%
! ATAAGCTAGCTTATAGTGTT+TGG + tig0025581:34731-34750 Msa1423870:intron 30.0%
GAAATGACATTGAAAAGACA+TGG + tig0025581:34786-34805 Msa1423870:intron 30.0%
ATTGAAAAGACATGGTTACT+TGG + tig0025581:34794-34813 Msa1423870:intron 30.0%
!! TAAATACCGAAAAGTGCTAT+GGG - tig0025581:35048-35067 None:intergenic 30.0%
! AAATCTGAGGAGTTGATTTA+TGG + tig0025581:35114-35133 Msa1423870:intron 30.0%
!! ACTTTTTCTTTGGTTATGCA+AGG - tig0025581:35183-35202 None:intergenic 30.0%
ATGTTTATGGAGAAGTTGAA+CGG + tig0025581:35333-35352 Msa1423870:intron 30.0%
TTAAGACTATCCATGACATA+AGG - tig0025581:35444-35463 None:intergenic 30.0%
TCAAACACAGATTGATTACA+TGG - tig0025581:35492-35511 None:intergenic 30.0%
! TATTTTCCTGTTGTATGTAC+TGG + tig0025581:35605-35624 Msa1423870:intron 30.0%
! TACAACAAGTTACTTTAAGC+TGG - tig0025581:35680-35699 None:intergenic 30.0%
!! ACTTGTTGTACACAATTTAG+TGG + tig0025581:35690-35709 Msa1423870:intron 30.0%
TGTTTGTGGATATAGAAGTT+CGG + tig0025581:35720-35739 Msa1423870:intron 30.0%
TCCTCACAATCACATAAATT+TGG + tig0025581:35810-35829 Msa1423870:intron 30.0%
TCCAAATTTATGTGATTGTG+AGG - tig0025581:35814-35833 None:intergenic 30.0%
ACAAAAACTGAAAGACAAGA+TGG - tig0025581:35945-35964 None:intergenic 30.0%
ACTATACAAAACAGTTTGCA+AGG + tig0025581:36239-36258 Msa1423870:intron 30.0%
GAATATCGTCTGAAGATTTA+AGG + tig0025581:36261-36280 Msa1423870:CDS 30.0%
! TGCAAGTATTGTACTCAAAA+TGG - tig0025581:36419-36438 None:intergenic 30.0%
ATAAAATCTAGATTCAGCCT+TGG - tig0025581:37110-37129 None:intergenic 30.0%
AAACAAAGTTGGGTTAAACA+CGG - tig0025581:37179-37198 None:intergenic 30.0%
! CAACTTTTGTTAAAGGGTAA+TGG - tig0025581:37224-37243 None:intergenic 30.0%
TATATATAAGGTGTGGTTAG+GGG + tig0025581:37256-37275 Msa1423870:intron 30.0%
AAAGTATAATCCTGTAGTTC+GGG + tig0025581:37436-37455 Msa1423870:intron 30.0%
GTTAGTAGTATTAGCAAAAG+TGG + tig0025581:37458-37477 Msa1423870:intron 30.0%
! AGTTACTGTCGAAACATTTT+TGG + tig0025581:37671-37690 Msa1423870:CDS 30.0%
TACAACAAGAGCAACAATAA+GGG - tig0025581:37749-37768 None:intergenic 30.0%
ATACAACAAGAGCAACAATA+AGG - tig0025581:37750-37769 None:intergenic 30.0%
AGGGAGAGTTTAAAAGAAAA+TGG + tig0025581:37850-37869 Msa1423870:intron 30.0%
GGGAGAGTTTAAAAGAAAAT+GGG + tig0025581:37851-37870 Msa1423870:intron 30.0%
AGAGTTTAAAAGAAAATGGG+TGG + tig0025581:37854-37873 Msa1423870:intron 30.0%
GAGTTTAAAAGAAAATGGGT+GGG + tig0025581:37855-37874 Msa1423870:intron 30.0%
AAAAACAAAAGGATTTGGGT+TGG - tig0025581:38044-38063 None:intergenic 30.0%
TTAACAAGTGAAGTCATTGA+AGG + tig0025581:37977-37996 Msa1423870:intron 30.0%
GCATCAAGGTATAAATAGTA+AGG - tig0025581:38237-38256 None:intergenic 30.0%
!!! AATGTCATTTTAAGGCATCA+AGG - tig0025581:38251-38270 None:intergenic 30.0%
!!! ACGTGTATTTTAGTCATAAG+TGG - tig0025581:38306-38325 None:intergenic 30.0%
! TTTTTAATGTCCCATTTTGG+AGG - tig0025581:38373-38392 None:intergenic 30.0%
TCATCTTGTAATCAAGTGAA+CGG - tig0025581:38462-38481 None:intergenic 30.0%
CAGTTTATTACTTTAACCTC+TGG + tig0025581:38624-38643 Msa1423870:intron 30.0%
CAAAGGAAAATAGTAACACT+AGG + tig0025581:38719-38738 Msa1423870:intron 30.0%
GTGAAGTTTCAAATGAGATA+AGG + tig0025581:38812-38831 Msa1423870:intron 30.0%
!! GAAGGTATTGAGTTGTTATT+GGG - tig0025581:38886-38905 None:intergenic 30.0%
!! AGAAGGTATTGAGTTGTTAT+TGG - tig0025581:38887-38906 None:intergenic 30.0%
AAGAGACATTATAATAGGAG+GGG - tig0025581:39045-39064 None:intergenic 30.0%
TACTTCTAATTATAGAACCC+TGG - tig0025581:39143-39162 None:intergenic 30.0%
! TGCGTTTTCAGTTCTTTAAA+TGG + tig0025581:39440-39459 Msa1423870:intron 30.0%
AATTGAATCAGAGTCATTGA+AGG - tig0025581:39549-39568 None:intergenic 30.0%
AGTTGCTCTTCATAGAATAT+AGG + tig0025581:39571-39590 Msa1423870:intron 30.0%
AATTATACCAGTGCAACTAT+CGG + tig0025581:39677-39696 Msa1423870:intron 30.0%
TGAAGAAAAAGATGCATAGT+GGG - tig0025581:39794-39813 None:intergenic 30.0%
ATGAAGAAAAAGATGCATAG+TGG - tig0025581:39795-39814 None:intergenic 30.0%
!! TTTGTACCTGTTTCTATCAA+CGG - tig0025581:39881-39900 None:intergenic 30.0%
TAGAATACATGCATAAACAC+TGG + tig0025581:39973-39992 Msa1423870:intron 30.0%
ATTGAATATTACACAGGAAC+TGG + tig0025581:40002-40021 Msa1423870:intron 30.0%
GAAATACATAGACATGGTTT+CGG + tig0025581:40024-40043 Msa1423870:intron 30.0%
TGGGACGATATTATTAAAAC+TGG - tig0025581:40233-40252 None:intergenic 30.0%
AAGTTAACCTAGTGCAAAAA+AGG + tig0025581:40349-40368 Msa1423870:intron 30.0%
!!! AACAAAACCTTTTTTGCACT+AGG - tig0025581:40359-40378 None:intergenic 30.0%
! TTTTGTGTTTGTTCACAGAA+AGG + tig0025581:40405-40424 Msa1423870:intron 30.0%
! GAGTATTTAGCAGATGTTTT+TGG + tig0025581:40783-40802 Msa1423870:three_prime_UTR 30.0%
! TATTGCATGATACTTTTGCA+TGG - tig0025581:40948-40967 None:intergenic 30.0%
TGTATTCATTCATTCATCCC+TGG - tig0025581:34115-34134 None:intergenic 35.0%
GGATGAATGAATGAATACAG+AGG + tig0025581:34116-34135 Msa1423870:five_prime_UTR 35.0%
CAGTCAGTGATTGATTGATT+AGG + tig0025581:34147-34166 Msa1423870:five_prime_UTR 35.0%
! AGATTGAAGTGAAGGTGTAA+AGG - tig0025581:34186-34205 None:intergenic 35.0%
AAATTTGGGAATACCTGTCA+TGG - tig0025581:34257-34276 None:intergenic 35.0%
! ACCAAAAAGGGTTAGCAAAA+CGG - tig0025581:34324-34343 None:intergenic 35.0%
AGAAATGGAGATTGAAGCAT+TGG + tig0025581:34382-34401 Msa1423870:CDS 35.0%
! AGCATTGGAAGCTATACTTA+TGG + tig0025581:34397-34416 Msa1423870:CDS 35.0%
GAAATACATTCTGGTGAAAG+TGG + tig0025581:34531-34550 Msa1423870:intron 35.0%
!! TTTAATCTGGAAGCACCTAT+TGG - tig0025581:34568-34587 None:intergenic 35.0%
TTTACCAAATAGAGCCTACA+TGG - tig0025581:34693-34712 None:intergenic 35.0%
AGACTATCGAAAACTGCTAT+AGG + tig0025581:34899-34918 Msa1423870:intron 35.0%
ACAAGCTCATGAGAAAACTA+CGG + tig0025581:34938-34957 Msa1423870:intron 35.0%
!! GTAAATACCGAAAAGTGCTA+TGG - tig0025581:35049-35068 None:intergenic 35.0%
TGTTTATGGAGAAGTTGAAC+GGG + tig0025581:35334-35353 Msa1423870:intron 35.0%
CTCTTGGTATTTATCCAAAC+TGG + tig0025581:35418-35437 Msa1423870:intron 35.0%
ATTCATCCAGTACATACAAC+AGG - tig0025581:35614-35633 None:intergenic 35.0%
CAAAGAAAGAGGGAAAGTAA+TGG - tig0025581:35753-35772 None:intergenic 35.0%
TTTATGTGATTGTGAGGAAG+AGG - tig0025581:35808-35827 None:intergenic 35.0%
TCTGTGTTATGCAATTGTAC+AGG + tig0025581:35854-35873 Msa1423870:intron 35.0%
ATATCAAAGAGGAAGAAACC+TGG - tig0025581:35909-35928 None:intergenic 35.0%
GAAAGACAAACTTCAACAAG+AGG + tig0025581:36289-36308 Msa1423870:CDS 35.0%
TTTGAGTACAATACTTGCAC+TGG + tig0025581:36420-36439 Msa1423870:intron 35.0%
!! ATTTGTTGTGCATACTTGTC+AGG + tig0025581:36561-36580 Msa1423870:intron 35.0%
AGGCATTCTTACATCTTCTT+TGG - tig0025581:36738-36757 None:intergenic 35.0%
! ATTTCCGAGCATTTGTTACA+TGG + tig0025581:36834-36853 Msa1423870:intron 35.0%
CATCGATGTTAGAAGGATTA+AGG + tig0025581:36943-36962 Msa1423870:intron 35.0%
! ACTATGACTTTCACTAGTCT+AGG - tig0025581:37006-37025 None:intergenic 35.0%
ACTTCATATCCAAGGTTCAT+TGG + tig0025581:37042-37061 Msa1423870:intron 35.0%
!!! AAGATCACTGATTTTCACCA+AGG + tig0025581:37090-37109 Msa1423870:intron 35.0%
AACAAAGTTGGGTTAAACAC+GGG - tig0025581:37178-37197 None:intergenic 35.0%
CTTCAATTGTGTTAAACCTC+TGG + tig0025581:37299-37318 Msa1423870:intron 35.0%
! AAATGTTGCTTGGAAAAAGC+TGG + tig0025581:37594-37613 Msa1423870:intron 35.0%
CCACTATCTAAGAATGTTGA+AGG - tig0025581:37635-37654 None:intergenic 35.0%
CCTTCAACATTCTTAGATAG+TGG + tig0025581:37632-37651 Msa1423870:intron 35.0%
ACAACAAGAGCAACAATAAG+GGG - tig0025581:37748-37767 None:intergenic 35.0%
GCAATCATGACAAATTGGTT+TGG - tig0025581:38121-38140 None:intergenic 35.0%
AACCAATTTGTCATGATTGC+AGG + tig0025581:38121-38140 Msa1423870:intron 35.0%
TTACAAGATGACCATACTAG+TGG + tig0025581:38471-38490 Msa1423870:intron 35.0%
!! TCCTGGCTTTTGAATTTGTT+AGG + tig0025581:38502-38521 Msa1423870:intron 35.0%
TCCTAACAAATTCAAAAGCC+AGG - tig0025581:38506-38525 None:intergenic 35.0%
! TAGACTAGTTGGATAGAAAC+TGG + tig0025581:38569-38588 Msa1423870:intron 35.0%
!! TTTTGAGAATCATTCTCCAG+AGG - tig0025581:38643-38662 None:intergenic 35.0%
GAGAATGATTCTCAAAACAG+AGG + tig0025581:38646-38665 Msa1423870:intron 35.0%
TTTCAAATGAGATAAGGCAC+AGG + tig0025581:38818-38837 Msa1423870:intron 35.0%
TTCAAATGAGATAAGGCACA+GGG + tig0025581:38819-38838 Msa1423870:intron 35.0%
! GTATTGAGTTGTTATTGGGT+GGG - tig0025581:38882-38901 None:intergenic 35.0%
!!! ACAAGGTGAAACTTTTTTGG+GGG - tig0025581:39090-39109 None:intergenic 35.0%
!!! GACAAGGTGAAACTTTTTTG+GGG - tig0025581:39091-39110 None:intergenic 35.0%
!!! GGACAAGGTGAAACTTTTTT+GGG - tig0025581:39092-39111 None:intergenic 35.0%
!!! AGGACAAGGTGAAACTTTTT+TGG - tig0025581:39093-39112 None:intergenic 35.0%
GTGAAGGAAAAGGAAATGAA+GGG - tig0025581:39467-39486 None:intergenic 35.0%
AGTGAAGGAAAAGGAAATGA+AGG - tig0025581:39468-39487 None:intergenic 35.0%
GAGAATGAAAGTGAAGGAAA+AGG - tig0025581:39477-39496 None:intergenic 35.0%
GTAGAAGAGAATGAAAGTGA+AGG - tig0025581:39483-39502 None:intergenic 35.0%
CGTTATTGCTCGCATTTATT+TGG - tig0025581:39627-39646 None:intergenic 35.0%
GGTATAATTGACGTCATAAC+AGG - tig0025581:39666-39685 None:intergenic 35.0%
TTGGTACATCATGCCAAAAA+TGG - tig0025581:39832-39851 None:intergenic 35.0%
!!! AGCACCGATTTTGAAGTTTT+TGG - tig0025581:39851-39870 None:intergenic 35.0%
!! TTGTACCTGTTTCTATCAAC+GGG - tig0025581:39880-39899 None:intergenic 35.0%
GACTTGTATTGAGAAATCTC+TGG + tig0025581:39925-39944 Msa1423870:intron 35.0%
GAACTGGAAATACATAGACA+TGG + tig0025581:40018-40037 Msa1423870:intron 35.0%
TAGAGTGTGGTTATTTGAGT+GGG - tig0025581:40073-40092 None:intergenic 35.0%
TTAGAGTGTGGTTATTTGAG+TGG - tig0025581:40074-40093 None:intergenic 35.0%
GTTATCAAGAAGTTAGAGTG+TGG - tig0025581:40086-40105 None:intergenic 35.0%
!! ATCCTTTCGCTATTTCTTCT+TGG + tig0025581:40115-40134 Msa1423870:intron 35.0%
AACCAAGAAGAAATAGCGAA+AGG - tig0025581:40120-40139 None:intergenic 35.0%
!! CATTGACTTTGATGATGATG+AGG + tig0025581:40473-40492 Msa1423870:CDS 35.0%
!! CTTTCCTTGTTGTCTTTTGA+GGG + tig0025581:40715-40734 Msa1423870:three_prime_UTR 35.0%
TCATGGTGAGTTAGTTGGAT+TGG - tig0025581:34240-34259 None:intergenic 40.0%
! ACCGTTTTGCTAACCCTTTT+TGG + tig0025581:34320-34339 Msa1423870:intron 40.0%
GTGGTTTAAGCACTTCCAAT+AGG + tig0025581:34550-34569 Msa1423870:CDS 40.0%
!! CCTGAGCAGTGATTTTAATC+TGG - tig0025581:34581-34600 None:intergenic 40.0%
CCAGATTAAAATCACTGCTC+AGG + tig0025581:34578-34597 Msa1423870:CDS 40.0%
!! TCTTGGGCATGCTTTTAGTT+CGG + tig0025581:34648-34667 Msa1423870:intron 40.0%
TACTCCATGTAGGCTCTATT+TGG + tig0025581:34686-34705 Msa1423870:intron 40.0%
!! AAAAGTGCTATGGGTCTGTT+TGG - tig0025581:35039-35058 None:intergenic 40.0%
! AACAGACCCATAGCACTTTT+CGG + tig0025581:35039-35058 Msa1423870:intron 40.0%
! GTTGCTGTTGTTGAAGTCTA+TGG + tig0025581:35212-35231 Msa1423870:intron 40.0%
GTGAAAAGTCACGATTCTCT+TGG + tig0025581:35402-35421 Msa1423870:intron 40.0%
TTAGTGGAGTTCAGTGTTTG+TGG + tig0025581:35706-35725 Msa1423870:intron 40.0%
GTGTTATGCAATTGTACAGG+AGG + tig0025581:35857-35876 Msa1423870:intron 40.0%
GACGAGTCAAATACTAATCC+AGG + tig0025581:35888-35907 Msa1423870:CDS 40.0%
! TTTTGTTGCAGCTCAACAAC+TGG + tig0025581:36043-36062 Msa1423870:intron 40.0%
GTACGGCAGTTGACATTAAT+TGG - tig0025581:36163-36182 None:intergenic 40.0%
GTTTATTGCTTGAGCTGAAC+TGG + tig0025581:36339-36358 Msa1423870:intron 40.0%
ATCTTGAGTTCCATACCCAT+AGG - tig0025581:36543-36562 None:intergenic 40.0%
TGTGCATACTTGTCAGGTTA+TGG + tig0025581:36567-36586 Msa1423870:intron 40.0%
ATGCAAAACTTGTGTTCCAC+AGG + tig0025581:36598-36617 Msa1423870:intron 40.0%
CTCTTTAGCTGAGCTAACAA+GGG - tig0025581:36657-36676 None:intergenic 40.0%
ACTCTTTAGCTGAGCTAACA+AGG - tig0025581:36658-36677 None:intergenic 40.0%
TTGTTAGCTCAGCTAAAGAG+TGG + tig0025581:36657-36676 Msa1423870:CDS 40.0%
ACGACCATGTAACAAATGCT+CGG - tig0025581:36841-36860 None:intergenic 40.0%
GAAGCTTCATCGATGTTAGA+AGG + tig0025581:36936-36955 Msa1423870:intron 40.0%
AGGATTAAGGTTGCATGACA+TGG + tig0025581:36956-36975 Msa1423870:intron 40.0%
GACATGGCAGGATACTTATT+AGG + tig0025581:36972-36991 Msa1423870:intron 40.0%
! TTTCACTAGTCTAGGCACAT+TGG - tig0025581:36998-37017 None:intergenic 40.0%
ACTCACTAACCAATGAACCT+TGG - tig0025581:37054-37073 None:intergenic 40.0%
! ATTGTGTTAAACCTCTGGAG+TGG + tig0025581:37304-37323 Msa1423870:intron 40.0%
!! TTGTGTTAAACCTCTGGAGT+GGG + tig0025581:37305-37324 Msa1423870:intron 40.0%
TCATGATGCTCATCTACCAT+GGG - tig0025581:37374-37393 None:intergenic 40.0%
ATCATGATGCTCATCTACCA+TGG - tig0025581:37375-37394 None:intergenic 40.0%
ATACTACTAACCCGAACTAC+AGG - tig0025581:37449-37468 None:intergenic 40.0%
CACCACGTAAGAATAACAGA+AGG - tig0025581:37503-37522 None:intergenic 40.0%
!! TTCGTCTCTGAAATGTTGCT+TGG + tig0025581:37584-37603 Msa1423870:intron 40.0%
! TCTTAGATAGTGGTACCTCA+TGG + tig0025581:37642-37661 Msa1423870:intron 40.0%
!!! CTGTCGAAACATTTTTGGCA+TGG + tig0025581:37676-37695 Msa1423870:CDS 40.0%
!!! TCGAAACATTTTTGGCATGG+AGG + tig0025581:37679-37698 Msa1423870:CDS 40.0%
!!! CGAAACATTTTTGGCATGGA+GGG + tig0025581:37680-37699 Msa1423870:CDS 40.0%
TGTGACACCTGATTATCAGT+AGG + tig0025581:37798-37817 Msa1423870:intron 40.0%
GTGACACCTGATTATCAGTA+GGG + tig0025581:37799-37818 Msa1423870:intron 40.0%
! AGTAGGGCTAGGGATTTTAA+GGG + tig0025581:37815-37834 Msa1423870:intron 40.0%
AGCCTGCAATCATGACAAAT+TGG - tig0025581:38126-38145 None:intergenic 40.0%
TCGAAGGAAAAGAAACTCAC+TGG + tig0025581:38171-38190 Msa1423870:CDS 40.0%
!! AATTCTTGGTGCCTCCAAAA+TGG + tig0025581:38359-38378 Msa1423870:intron 40.0%
!! ATTCTTGGTGCCTCCAAAAT+GGG + tig0025581:38360-38379 Msa1423870:intron 40.0%
TAACCACACGTTAGACTAGT+TGG + tig0025581:38558-38577 Msa1423870:intron 40.0%
! TATCCAACTAGTCTAACGTG+TGG - tig0025581:38564-38583 None:intergenic 40.0%
! GGTATTGAGTTGTTATTGGG+TGG - tig0025581:38883-38902 None:intergenic 40.0%
!!! CAAGGTGAAACTTTTTTGGG+GGG - tig0025581:39089-39108 None:intergenic 40.0%
AAAAGTTTCACCTTGTCCTC+AGG + tig0025581:39094-39113 Msa1423870:intron 40.0%
AAAGTTTCACCTTGTCCTCA+GGG + tig0025581:39095-39114 Msa1423870:intron 40.0%
TGTGTGGTTACGAGGTAATT+TGG - tig0025581:39203-39222 None:intergenic 40.0%
CTGAAAACGCACAAAGAAGA+GGG - tig0025581:39431-39450 None:intergenic 40.0%
ACTGAAAACGCACAAAGAAG+AGG - tig0025581:39432-39451 None:intergenic 40.0%
GCATTTCAAGCCAGAATATC+AGG - tig0025581:39605-39624 None:intergenic 40.0%
TGACGTCATAACAGGTTAGT+TGG - tig0025581:39658-39677 None:intergenic 40.0%
! TGATACCCGTTGATAGAAAC+AGG + tig0025581:39872-39891 Msa1423870:intron 40.0%
AGAGAACCAAACTCTAACCA+TGG - tig0025581:40050-40069 None:intergenic 40.0%
! GATGATGATGAGGATTTCGA+AGG + tig0025581:40483-40502 Msa1423870:CDS 40.0%
!! TGCAATTTAACTTGCTCGCA+TGG - tig0025581:40665-40684 None:intergenic 40.0%
!! GCTTTCCTTGTTGTCTTTTG+AGG + tig0025581:40714-40733 Msa1423870:three_prime_UTR 40.0%
AACTCCCTCAAAAGACAACA+AGG - tig0025581:40722-40741 None:intergenic 40.0%
AAAACAAATCCCCCTCATGA+TGG - tig0025581:40746-40765 None:intergenic 40.0%
TGGCGTGTGACAATGTATTA+AGG + tig0025581:40803-40822 Msa1423870:three_prime_UTR 40.0%
TGAACACAAAGACTAATGGG+TGG + tig0025581:40863-40882 Msa1423870:three_prime_UTR 40.0%
AGGTGTAAAGGTCGAAGAAG+AGG - tig0025581:34174-34193 None:intergenic 45.0%
TCCAACTAACTCACCATGAC+AGG + tig0025581:34241-34260 Msa1423870:exon 45.0%
ACCTGTCATGGTGAGTTAGT+TGG - tig0025581:34245-34264 None:intergenic 45.0%
!! GCAAAACGGTGTCGTTTCAA+TGG - tig0025581:34310-34329 None:intergenic 45.0%
CTACGCGCAAGAACAAGAAA+TGG + tig0025581:34367-34386 Msa1423870:CDS 45.0%
!! TCCAAACTGGCCTTATGTCA+TGG + tig0025581:35431-35450 Msa1423870:intron 45.0%
TCCATGACATAAGGCCAGTT+TGG - tig0025581:35435-35454 None:intergenic 45.0%
GCAATTGTACAGGAGGAAGA+TGG + tig0025581:35864-35883 Msa1423870:intron 45.0%
GACCTGCTCACATTCAAAAG+CGG - tig0025581:36110-36129 None:intergenic 45.0%
! CCAAGATTTTCAGATGCCTG+TGG - tig0025581:36617-36636 None:intergenic 45.0%
CCACAGGCATCTGAAAATCT+TGG + tig0025581:36614-36633 Msa1423870:intron 45.0%
GGCATCTGAAAATCTTGGCA+TGG + tig0025581:36619-36638 Msa1423870:intron 45.0%
CTAAAGAGTGGTTGACTGAG+CGG + tig0025581:36669-36688 Msa1423870:CDS 45.0%
CGGTATTGTGAAGACTCAGA+TGG + tig0025581:36689-36708 Msa1423870:CDS 45.0%
TTAAGGTTGCATGACATGGC+AGG + tig0025581:36960-36979 Msa1423870:intron 45.0%
!! GGTTAGTGAGTGCTGAGTAA+TGG + tig0025581:37063-37082 Msa1423870:intron 45.0%
ATTGAAGTGCAATCCAACCC+TGG - tig0025581:37286-37305 None:intergenic 45.0%
!! TGTGTTAAACCTCTGGAGTG+GGG + tig0025581:37306-37325 Msa1423870:intron 45.0%
CGCCTTCTGTTATTCTTACG+TGG + tig0025581:37498-37517 Msa1423870:intron 45.0%
ACAGTAACTGCTTCTCCATG+AGG - tig0025581:37660-37679 None:intergenic 45.0%
!!! CATTTTTGGCATGGAGGGAA+AGG + tig0025581:37685-37704 Msa1423870:CDS 45.0%
GCAACAATAAGGGGCTTACT+TGG - tig0025581:37739-37758 None:intergenic 45.0%
ACCTGATTATCAGTAGGGCT+AGG + tig0025581:37804-37823 Msa1423870:intron 45.0%
CCTGATTATCAGTAGGGCTA+GGG + tig0025581:37805-37824 Msa1423870:intron 45.0%
! CAGTAGGGCTAGGGATTTTA+AGG + tig0025581:37814-37833 Msa1423870:intron 45.0%
TTTAAGGGCTTACGCATCTC+AGG + tig0025581:37830-37849 Msa1423870:intron 45.0%
TTAAGGGCTTACGCATCTCA+GGG + tig0025581:37831-37850 Msa1423870:intron 45.0%
GACAGTGGTTTGAAAGTGGA+AGG + tig0025581:38196-38215 Msa1423870:CDS 45.0%
GTGGTTTGAAAGTGGAAGGA+TGG + tig0025581:38200-38219 Msa1423870:CDS 45.0%
GGACGCATTAACCACTAGTA+TGG - tig0025581:38485-38504 None:intergenic 45.0%
TACTAGTGGTTAATGCGTCC+TGG + tig0025581:38485-38504 Msa1423870:intron 45.0%
!! GGCATAGTGGGTTATCTAGA+AGG - tig0025581:38904-38923 None:intergenic 45.0%
TCTAGATAACCCACTATGCC+TGG + tig0025581:38904-38923 Msa1423870:intron 45.0%
GAATAAATAGGGAAAGGGCC+AGG - tig0025581:38925-38944 None:intergenic 45.0%
GGTTGCATTAGTGTCTACCA+GGG + tig0025581:39123-39142 Msa1423870:intron 45.0%
AGAAGTAGAGTGACAGAGCA+TGG + tig0025581:39156-39175 Msa1423870:intron 45.0%
GTGGTTACGAGGTAATTTGG+TGG - tig0025581:39200-39219 None:intergenic 45.0%
! ACGACTTTTGTGTGGTTACG+AGG - tig0025581:39211-39230 None:intergenic 45.0%
CGTAACCACACAAAAGTCGT+TGG + tig0025581:39211-39230 Msa1423870:intron 45.0%
! CAGTTATAGGCTTTTGTCGC+TGG - tig0025581:39241-39260 None:intergenic 45.0%
CAGCGACAAAAGCCTATAAC+TGG + tig0025581:39239-39258 Msa1423870:intron 45.0%
CGACAAAAGCCTATAACTGG+CGG + tig0025581:39242-39261 Msa1423870:intron 45.0%
TCAGAGTCATTGAAGGCTCA+CGG - tig0025581:39542-39561 None:intergenic 45.0%
GGCAATACGTCCTGATATTC+TGG + tig0025581:39592-39611 Msa1423870:intron 45.0%
CGTAACTTCAACACCTCTGT+CGG + tig0025581:39715-39734 Msa1423870:intron 45.0%
AAAGAGGGAAACATCAGAGG+AGG - tig0025581:39746-39765 None:intergenic 45.0%
GGAAAAGAGGGAAACATCAG+AGG - tig0025581:39749-39768 None:intergenic 45.0%
GAGGAACGTTTCGGAAAAGA+GGG - tig0025581:39761-39780 None:intergenic 45.0%
TGAGGAACGTTTCGGAAAAG+AGG - tig0025581:39762-39781 None:intergenic 45.0%
! GCTAGCATTGAGGAACGTTT+CGG - tig0025581:39770-39789 None:intergenic 45.0%
TTTCGGCCATGGTTAGAGTT+TGG + tig0025581:40041-40060 Msa1423870:intron 45.0%
AGCTGTTGTCACGGAAGATT+TGG + tig0025581:40431-40450 Msa1423870:CDS 45.0%
TGTCACGGAAGATTTGGATG+AGG + tig0025581:40437-40456 Msa1423870:CDS 45.0%
AGATTTGGATGAGGAGGATG+AGG + tig0025581:40446-40465 Msa1423870:CDS 45.0%
TTGAGGGAGTTTCCATCATG+AGG + tig0025581:40731-40750 Msa1423870:three_prime_UTR 45.0%
TGAGGGAGTTTCCATCATGA+GGG + tig0025581:40732-40751 Msa1423870:three_prime_UTR 45.0%
!!! TTTTATTAAAATAAATAGAT+GGG - tig0025581:34449-34468 None:intergenic 5.0%
!!! TTTTTATTAAAATAAATAGA+TGG - tig0025581:34450-34469 None:intergenic 5.0%
TTCAAAAGCGGAGGTTCGTC+TGG - tig0025581:36098-36117 None:intergenic 50.0%
CTGCTCACATTCAAAAGCGG+AGG - tig0025581:36107-36126 None:intergenic 50.0%
!! CTCCGCTTTTGAATGTGAGC+AGG + tig0025581:36105-36124 Msa1423870:CDS 50.0%
TCATGCTGCGCAATGACCTA+TGG + tig0025581:36524-36543 Msa1423870:intron 50.0%
CATGCTGCGCAATGACCTAT+GGG + tig0025581:36525-36544 Msa1423870:intron 50.0%
TGCGCAATGACCTATGGGTA+TGG + tig0025581:36530-36549 Msa1423870:intron 50.0%
! TGGTGATGCTGAAGCAGAAG+AGG + tig0025581:36709-36728 Msa1423870:CDS 50.0%
TGATGCTGAAGCAGAAGAGG+CGG + tig0025581:36712-36731 Msa1423870:CDS 50.0%
TCCAGTTATTGCCATGCCCA+TGG + tig0025581:37355-37374 Msa1423870:intron 50.0%
ACCATGGGCATGGCAATAAC+TGG - tig0025581:37359-37378 None:intergenic 50.0%
ATGCTCATCTACCATGGGCA+TGG - tig0025581:37369-37388 None:intergenic 50.0%
CCCTAGCCCTACTGATAATC+AGG - tig0025581:37808-37827 None:intergenic 50.0%
GAAGTAGCAAGCACAGACTC+TGG - tig0025581:38153-38172 None:intergenic 50.0%
! GTCTGTGCTTGCTACTTCGA+AGG + tig0025581:38155-38174 Msa1423870:CDS 50.0%
AGAAACTCACTGGCAGACAG+TGG + tig0025581:38181-38200 Msa1423870:CDS 50.0%
GGCAGACAGTGGTTTGAAAG+TGG + tig0025581:38192-38211 Msa1423870:CDS 50.0%
TTGGCGTGCATGCAACATTC+TGG - tig0025581:38784-38803 None:intergenic 50.0%
! GAGTTGTTATTGGGTGGGAG+AGG - tig0025581:38877-38896 None:intergenic 50.0%
TAATGCAACCCTTCACCCTG+AGG - tig0025581:39113-39132 None:intergenic 50.0%
GGGTTGCATTAGTGTCTACC+AGG + tig0025581:39122-39141 Msa1423870:intron 50.0%
! GAGCACCAACGACTTTTGTG+TGG - tig0025581:39219-39238 None:intergenic 50.0%
AGCCTATAACTGGCGGAGAA+TGG + tig0025581:39249-39268 Msa1423870:intron 50.0%
GTCCATTCTCCGCCAGTTAT+AGG - tig0025581:39254-39273 None:intergenic 50.0%
! TAACTGGCGGAGAATGGACT+CGG + tig0025581:39255-39274 Msa1423870:intron 50.0%
! GAATGGACTCGGCAACGAAA+TGG + tig0025581:39266-39285 Msa1423870:intron 50.0%
ATGAAGGAGTCCCTTCCTGT+GGG - tig0025581:39315-39334 None:intergenic 50.0%
GTGTTCACCGATAGTTGCAC+TGG - tig0025581:39687-39706 None:intergenic 50.0%
!! GAGGTGTTGAAGTTACGCAG+AGG - tig0025581:39712-39731 None:intergenic 50.0%
!! CATAGTGGGTGCTAGCATTG+AGG - tig0025581:39780-39799 None:intergenic 50.0%
CATAGACATGGTTTCGGCCA+TGG + tig0025581:40030-40049 Msa1423870:intron 50.0%
! GAAAGGTGCAGCTGTTGTCA+CGG + tig0025581:40422-40441 Msa1423870:intron 50.0%
CACGGAAGATTTGGATGAGG+AGG + tig0025581:40440-40459 Msa1423870:CDS 50.0%
TGCTCGCATGGAAGAATGTG+TGG - tig0025581:40653-40672 None:intergenic 50.0%
GAGGGAGTTTCCATCATGAG+GGG + tig0025581:40733-40752 Msa1423870:three_prime_UTR 50.0%
AGGGAGTTTCCATCATGAGG+GGG + tig0025581:40734-40753 Msa1423870:three_prime_UTR 50.0%
!! GTGTGGTTAGGGGTGTTCCA+GGG + tig0025581:37266-37285 Msa1423870:intron 55.0%
TCACCTTGTCCTCAGGGTGA+AGG + tig0025581:39101-39120 Msa1423870:intron 55.0%
CACCTTGTCCTCAGGGTGAA+GGG + tig0025581:39102-39121 Msa1423870:intron 55.0%
AACCCTTCACCCTGAGGACA+AGG - tig0025581:39107-39126 None:intergenic 55.0%
TGACAGAGCATGGCAGCAGT+AGG + tig0025581:39166-39185 Msa1423870:intron 55.0%
TGGACTCGGCAACGAAATGG+CGG + tig0025581:39269-39288 Msa1423870:intron 55.0%
GCAACGAAATGGCGGTTGGA+TGG + tig0025581:39277-39296 Msa1423870:intron 55.0%
TGGCGGTTGGATGGACACTA+TGG + tig0025581:39286-39305 Msa1423870:intron 55.0%
ACTATGGTGCCCCACAGGAA+GGG + tig0025581:39302-39321 Msa1423870:intron 55.0%
TGAAGGAGTCCCTTCCTGTG+GGG - tig0025581:39314-39333 None:intergenic 55.0%
GATGAAGGAGTCCCTTCCTG+TGG - tig0025581:39316-39335 None:intergenic 55.0%
GCTCACGGTTCATGCGATGA+AGG - tig0025581:39527-39546 None:intergenic 55.0%
AGAGGAGGAGAAACCGACAG+AGG - tig0025581:39731-39750 None:intergenic 55.0%
!! GGTGTGGTTAGGGGTGTTCC+AGG + tig0025581:37265-37284 Msa1423870:intron 60.0%
!! GGTTAGGGGTGTTCCAGGGT+TGG + tig0025581:37270-37289 Msa1423870:intron 60.0%
ACACACACACCCCACTCCAG+AGG - tig0025581:37318-37337 None:intergenic 60.0%
GGGAAAGGGCCAGGCATAGT+GGG - tig0025581:38916-38935 None:intergenic 60.0%
AGGGAAAGGGCCAGGCATAG+TGG - tig0025581:38917-38936 None:intergenic 60.0%
CTCGGCAACGAAATGGCGGT+TGG + tig0025581:39273-39292 Msa1423870:intron 60.0%
TGGACACTATGGTGCCCCAC+AGG + tig0025581:39297-39316 Msa1423870:intron 60.0%
CACTATGGTGCCCCACAGGA+AGG + tig0025581:39301-39320 Msa1423870:intron 60.0%
Chromosome Type Strat End Strand Name
tig0025581 gene 34110 40983 34110 ID=Msa1423870;Name=Msa1423870
tig0025581 mRNA 34110 40983 34110 ID=Msa1423870-mRNA-1;Parent=Msa1423870;Name=Msa1423870-mRNA-1;_AED=0.13;_eAED=0.13;_QI=146|1|1|1|1|1|11|305|254
tig0025581 exon 34110 34262 34110 ID=Msa1423870-mRNA-1:exon:3439;Parent=Msa1423870-mRNA-1
tig0025581 exon 34366 34431 34366 ID=Msa1423870-mRNA-1:exon:3440;Parent=Msa1423870-mRNA-1
tig0025581 exon 34532 34599 34532 ID=Msa1423870-mRNA-1:exon:3441;Parent=Msa1423870-mRNA-1
tig0025581 exon 35876 35909 35876 ID=Msa1423870-mRNA-1:exon:3442;Parent=Msa1423870-mRNA-1
tig0025581 exon 36054 36126 36054 ID=Msa1423870-mRNA-1:exon:3443;Parent=Msa1423870-mRNA-1
tig0025581 exon 36253 36310 36253 ID=Msa1423870-mRNA-1:exon:3444;Parent=Msa1423870-mRNA-1
tig0025581 exon 36620 36745 36620 ID=Msa1423870-mRNA-1:exon:3445;Parent=Msa1423870-mRNA-1
tig0025581 exon 37648 37739 37648 ID=Msa1423870-mRNA-1:exon:3446;Parent=Msa1423870-mRNA-1
tig0025581 exon 38143 38221 38143 ID=Msa1423870-mRNA-1:exon:3447;Parent=Msa1423870-mRNA-1
tig0025581 exon 40423 40504 40423 ID=Msa1423870-mRNA-1:exon:3448;Parent=Msa1423870-mRNA-1
tig0025581 exon 40599 40983 40599 ID=Msa1423870-mRNA-1:exon:3449;Parent=Msa1423870-mRNA-1
tig0025581 five_prime_UTR 34110 34255 34110 ID=Msa1423870-mRNA-1:five_prime_utr;Parent=Msa1423870-mRNA-1
tig0025581 CDS 34256 34262 34256 ID=Msa1423870-mRNA-1:cds;Parent=Msa1423870-mRNA-1
tig0025581 CDS 34366 34431 34366 ID=Msa1423870-mRNA-1:cds;Parent=Msa1423870-mRNA-1
tig0025581 CDS 34532 34599 34532 ID=Msa1423870-mRNA-1:cds;Parent=Msa1423870-mRNA-1
tig0025581 CDS 35876 35909 35876 ID=Msa1423870-mRNA-1:cds;Parent=Msa1423870-mRNA-1
tig0025581 CDS 36054 36126 36054 ID=Msa1423870-mRNA-1:cds;Parent=Msa1423870-mRNA-1
tig0025581 CDS 36253 36310 36253 ID=Msa1423870-mRNA-1:cds;Parent=Msa1423870-mRNA-1
tig0025581 CDS 36620 36745 36620 ID=Msa1423870-mRNA-1:cds;Parent=Msa1423870-mRNA-1
tig0025581 CDS 37648 37739 37648 ID=Msa1423870-mRNA-1:cds;Parent=Msa1423870-mRNA-1
tig0025581 CDS 38143 38221 38143 ID=Msa1423870-mRNA-1:cds;Parent=Msa1423870-mRNA-1
tig0025581 CDS 40423 40504 40423 ID=Msa1423870-mRNA-1:cds;Parent=Msa1423870-mRNA-1
tig0025581 CDS 40599 40678 40599 ID=Msa1423870-mRNA-1:cds;Parent=Msa1423870-mRNA-1
tig0025581 three_prime_UTR 40679 40983 40679 ID=Msa1423870-mRNA-1:three_prime_utr;Parent=Msa1423870-mRNA-1
Gene Sequence

>Msa1423870

ATGACAGACTACGCGCAAGAACAAGAAATGGAGATTGAAGCATTGGAAGCTATACTTATGGATGAATTCAAAGAAATACATTCTGGTGAAAGTGGTTTAAGCACTTCCAATAGGTGCTTCCAGATTAAAATCACTGCTCAGGAGGAAGATGGAGACGAGTCAAATACTAATCCAGCTCAACAACTGGCTTTGATCTTCGCGCACACAGAAAAATATCCAGACGAACCTCCGCTTTTGAATGTGAGCAGTTTGCAAGGAATATCGTCTGAAGATTTAAGGATTTTGAAAGACAAACTTCAACAAGAGGCATCTGAAAATCTTGGCATGGCTATGATTTACACCCTTGTTAGCTCAGCTAAAGAGTGGTTGACTGAGCGGTATTGTGAAGACTCAGATGGTGATGCTGAAGCAGAAGAGGCGGCCAAAGAAGATATAGTGGTACCTCATGGAGAAGCAGTTACTGTCGAAACATTTTTGGCATGGAGGGAAAGGTTTGAAGCTGAACTAGCACTTGAACGAGCCAAGCTAATGCCAGAGTCTGTGCTTGCTACTTCGAAGGAAAAGAAACTCACTGGCAGACAGTGGTTTGAAAGTGGAAGGATGAAAGGTGCAGCTGTTGTCACGGAAGATTTGGATGAGGAGGATGAGGAAGACATTGACTTTGATGATGATGAGGATTTCGAAGATGATGAAGATGATATGCTTGAGCATTATCTAGCTGAAAAATCTGATTCATCCACACATTCTTCCATGCGAGCAAGTTAA

Protein sequence

>Msa1423870

MTDYAQEQEMEIEALEAILMDEFKEIHSGESGLSTSNRCFQIKITAQEEDGDESNTNPAQQLALIFAHTEKYPDEPPLLNVSSLQGISSEDLRILKDKLQQEASENLGMAMIYTLVSSAKEWLTERYCEDSDGDAEAEEAAKEDIVVPHGEAVTVETFLAWRERFEAELALERAKLMPESVLATSKEKKLTGRQWFESGRMKGAAVVTEDLDEEDEEDIDFDDDEDFEDDEDDMLEHYLAEKSDSSTHSSMRAS*