AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0388950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388950 MtrunA17_Chr8g0341531 99.213 254 2 0 1 254 1 254 0.0 510
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0388950 AT1G51730.1 70.445 247 71 2 1 246 1 246 8.09e-106 306

Find 66 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATATCGTCTGAAGATTTA+AGG 0.204105 3_1:+93498315 Msa0388950:CDS
TGGCGTGTGACAATGTATTA+AGG 0.299410 3_1:+93502857 Msa0388950:three_prime_UTR
AGGCATTCTTACATCTTCTT+TGG 0.306333 3_1:-93498789 None:intergenic
TATATGAACACAAAGACTAA+TGG 0.354098 3_1:+93502913 Msa0388950:three_prime_UTR
TTAGTTGGATTGGATTGAAT+TGG 0.375284 3_1:-93496281 None:intergenic
TTTAATCTGGAAGCACCTAT+TGG 0.387103 3_1:-93496619 None:intergenic
TTCATGTTAGAAATACATTC+TGG 0.390456 3_1:+93496576 Msa0388950:intron
CAGTCAGTGATTGATTGATT+AGG 0.390664 3_1:+93496201 Msa0388950:five_prime_UTR
AGCATTGGAAGCTATACTTA+TGG 0.397259 3_1:+93496451 Msa0388950:CDS
AGCTGTTGTCACGGAAGATT+TGG 0.403140 3_1:+93502485 Msa0388950:CDS
GTGGTTTAAGCACTTCCAAT+AGG 0.412630 3_1:+93496604 Msa0388950:CDS
TTCAAAAGCGGAGGTTCGTC+TGG 0.413109 3_1:-93498149 None:intergenic
ATATGAACACAAAGACTAAT+GGG 0.415701 3_1:+93502914 Msa0388950:three_prime_UTR
TCATGGTGAGTTAGTTGGAT+TGG 0.430928 3_1:-93496291 None:intergenic
ACCTGTCATGGTGAGTTAGT+TGG 0.434602 3_1:-93496296 None:intergenic
CCACAGGCATCTGAAAATCT+TGG 0.452799 3_1:+93498668 Msa0388950:intron
AGAAATGGAGATTGAAGCAT+TGG 0.464035 3_1:+93496436 Msa0388950:CDS
TTGAGGGAGTTTCCATCATG+AGG 0.477172 3_1:+93502785 Msa0388950:three_prime_UTR
CTACGCGCAAGAACAAGAAA+TGG 0.480177 3_1:+93496421 Msa0388950:CDS
AGATTTGGATGAGGAGGATG+AGG 0.480488 3_1:+93502500 Msa0388950:CDS
CCAGATTAAAATCACTGCTC+AGG 0.484543 3_1:+93496632 Msa0388950:CDS
TGCAATTTAACTTGCTCGCA+TGG 0.486262 3_1:-93502716 None:intergenic
GAAATACATTCTGGTGAAAG+TGG 0.495312 3_1:+93496585 Msa0388950:intron
ACTATACAAAACAGTTTGCA+AGG 0.496821 3_1:+93498293 Msa0388950:intron
TCCAACTAACTCACCATGAC+AGG 0.510196 3_1:+93496295 Msa0388950:exon
TGTATTCATTCATTCATCCC+TGG 0.514509 3_1:-93496166 None:intergenic
GACGAGTCAAATACTAATCC+AGG 0.514669 3_1:+93497942 Msa0388950:CDS
GAAAGACAAACTTCAACAAG+AGG 0.517470 3_1:+93498343 Msa0388950:CDS
ACTCTTTAGCTGAGCTAACA+AGG 0.518163 3_1:-93498709 None:intergenic
ATACTTATGGATGAATTCAA+AGG 0.522807 3_1:+93496464 Msa0388950:CDS
GATGATGATGAGGATTTCGA+AGG 0.528804 3_1:+93502537 Msa0388950:CDS
GGCAGACAGTGGTTTGAAAG+TGG 0.536978 3_1:+93500246 Msa0388950:CDS
TTAAAAGGTGTATTTGGCCA+GGG 0.542021 3_1:+93496149 None:intergenic
GCAATTGTACAGGAGGAAGA+TGG 0.544792 3_1:+93497918 Msa0388950:intron
GAAGTAGCAAGCACAGACTC+TGG 0.546961 3_1:-93500204 None:intergenic
CACGGAAGATTTGGATGAGG+AGG 0.550207 3_1:+93502494 Msa0388950:CDS
GACAGTGGTTTGAAAGTGGA+AGG 0.561439 3_1:+93500250 Msa0388950:CDS
TGAGGGAGTTTCCATCATGA+GGG 0.562768 3_1:+93502786 Msa0388950:three_prime_UTR
AGATTGAAGTGAAGGTGTAA+AGG 0.564919 3_1:-93496237 None:intergenic
CATTGACTTTGATGATGATG+AGG 0.578083 3_1:+93502527 Msa0388950:CDS
GTCTGTGCTTGCTACTTCGA+AGG 0.579213 3_1:+93500209 Msa0388950:CDS
TCTTAGATAGTGGTACCTCA+TGG 0.579437 3_1:+93499696 Msa0388950:intron
TGGTGATGCTGAAGCAGAAG+AGG 0.584742 3_1:+93498763 Msa0388950:CDS
GGCATCTGAAAATCTTGGCA+TGG 0.589383 3_1:+93498673 Msa0388950:intron
TCGAAGGAAAAGAAACTCAC+TGG 0.592415 3_1:+93500225 Msa0388950:CDS
GAAAGGTGCAGCTGTTGTCA+CGG 0.599442 3_1:+93502476 Msa0388950:intron
GTGGTTTGAAAGTGGAAGGA+TGG 0.600163 3_1:+93500254 Msa0388950:CDS
AGGGAGTTTCCATCATGAGG+GGG 0.611209 3_1:+93502788 Msa0388950:three_prime_UTR
TGCTCGCATGGAAGAATGTG+TGG 0.612004 3_1:-93502704 None:intergenic
AAATTTGGGAATACCTGTCA+TGG 0.615517 3_1:-93496308 None:intergenic
CTAAAGAGTGGTTGACTGAG+CGG 0.616560 3_1:+93498723 Msa0388950:CDS
TTGTTAGCTCAGCTAAAGAG+TGG 0.621613 3_1:+93498711 Msa0388950:CDS
GAGGGAGTTTCCATCATGAG+GGG 0.622813 3_1:+93502787 Msa0388950:three_prime_UTR
AGGTGTAAAGGTCGAAGAAG+AGG 0.625268 3_1:-93496225 None:intergenic
AAGTGTAAAGATTGAAGTGA+AGG 0.625529 3_1:-93496245 None:intergenic
TGTCACGGAAGATTTGGATG+AGG 0.632911 3_1:+93502491 Msa0388950:CDS
CTGCTCACATTCAAAAGCGG+AGG 0.633056 3_1:-93498158 None:intergenic
GACCTGCTCACATTCAAAAG+CGG 0.648261 3_1:-93498161 None:intergenic
ACAGTAACTGCTTCTCCATG+AGG 0.657064 3_1:-93499711 None:intergenic
AACTCCCTCAAAAGACAACA+AGG 0.666325 3_1:-93502773 None:intergenic
CTCTTTAGCTGAGCTAACAA+GGG 0.666399 3_1:-93498708 None:intergenic
TGATGCTGAAGCAGAAGAGG+CGG 0.674289 3_1:+93498766 Msa0388950:CDS
AGAAACTCACTGGCAGACAG+TGG 0.676924 3_1:+93500235 Msa0388950:CDS
CGGTATTGTGAAGACTCAGA+TGG 0.683666 3_1:+93498743 Msa0388950:CDS
TGAACACAAAGACTAATGGG+TGG 0.687410 3_1:+93502917 Msa0388950:three_prime_UTR
GGATGAATGAATGAATACAG+AGG 0.736890 3_1:+93496170 Msa0388950:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACATAATTTATATAACT+TGG - chr3_1:93497328-93497347 None:intergenic 10.0%
!! TAAAAATTGAGATAATTATT+AGG + chr3_1:93500441-93500460 Msa0388950:intron 10.0%
!!! TTGTTTTATAATTCAATAAA+TGG - chr3_1:93502252-93502271 None:intergenic 10.0%
!! ACAAAATAGAATATAAATTA+AGG - chr3_1:93502580-93502599 None:intergenic 10.0%
!!! ACTATTTTTATTTCTCAATT+TGG + chr3_1:93496525-93496544 Msa0388950:intron 15.0%
!!! TATTTATGTATTTAAGTTCT+TGG + chr3_1:93496685-93496704 Msa0388950:intron 15.0%
!!! ATTTATGTATTTAAGTTCTT+GGG + chr3_1:93496686-93496705 Msa0388950:intron 15.0%
!!! TATTTTTTTAATCAAATCTG+AGG + chr3_1:93497155-93497174 Msa0388950:intron 15.0%
!! TGAATTTCAATGAAATTATT+TGG + chr3_1:93497683-93497702 Msa0388950:intron 15.0%
!! AAGAAAATAATATATCAAAG+AGG - chr3_1:93497974-93497993 None:intergenic 15.0%
!! ACTAGTAGATAATATATATA+AGG + chr3_1:93499298-93499317 Msa0388950:intron 15.0%
!! TGTTAAAAACAAAAGAATTT+GGG - chr3_1:93500017-93500036 None:intergenic 15.0%
!! TTGTTAAAAACAAAAGAATT+TGG - chr3_1:93500018-93500037 None:intergenic 15.0%
!!! TAGTTGATAAAAAAAATTCT+TGG + chr3_1:93500399-93500418 Msa0388950:intron 15.0%
!!! TTGATAGTAATTTTTGAAAT+CGG + chr3_1:93500805-93500824 Msa0388950:intron 15.0%
!! GTTTGTATTAAGAATAAATA+GGG - chr3_1:93500990-93501009 None:intergenic 15.0%
!! TGTTTGTATTAAGAATAAAT+AGG - chr3_1:93500991-93501010 None:intergenic 15.0%
!!! TTATTCATTAATTAAGTTGT+CGG - chr3_1:93501021-93501040 None:intergenic 15.0%
!!! AAAGTCAATTTTAATATTCT+CGG + chr3_1:93501073-93501092 Msa0388950:intron 15.0%
!!! ATTTGTTTTTGTTATCATTA+AGG + chr3_1:93502811-93502830 Msa0388950:three_prime_UTR 15.0%
!! TAATGATGAAAAACCAAAAA+GGG - chr3_1:93496390-93496409 None:intergenic 20.0%
!! ATAATGATGAAAAACCAAAA+AGG - chr3_1:93496391-93496410 None:intergenic 20.0%
!! TACATAAATACACAAAAAGA+AGG - chr3_1:93496675-93496694 None:intergenic 20.0%
!! CTATTTGGTAAAATAATTTG+CGG + chr3_1:93496755-93496774 Msa0388950:intron 20.0%
!!! TTTTTTCAATTAAGATAACG+AGG + chr3_1:93496879-93496898 Msa0388950:intron 20.0%
!!! TTTTTCAATTAAGATAACGA+GGG + chr3_1:93496880-93496899 Msa0388950:intron 20.0%
!! TGTTTCTTCACTTATAAAAA+AGG + chr3_1:93497347-93497366 Msa0388950:intron 20.0%
!! TATAAAGTTGTAGATGTTTA+TGG + chr3_1:93497374-93497393 Msa0388950:intron 20.0%
!! ATAATGAAAAGTGAAAACAA+TGG - chr3_1:93497616-93497635 None:intergenic 20.0%
!! CATAACACAGATAAATATAA+GGG - chr3_1:93497899-93497918 None:intergenic 20.0%
!! TATATTATCAACCGTATATT+AGG - chr3_1:93498058-93498077 None:intergenic 20.0%
!!! TTGATAATATACAAAAGACA+TGG + chr3_1:93498067-93498086 Msa0388950:intron 20.0%
!!! TATATATTACTGTTGTTTGT+AGG + chr3_1:93498190-93498209 Msa0388950:intron 20.0%
!! ATGAAACAAAAACATATGTA+CGG - chr3_1:93498234-93498253 None:intergenic 20.0%
!! ATAAACAGAAAAACTGTATA+TGG - chr3_1:93498379-93498398 None:intergenic 20.0%
!! ATTAAGAAGTCTTTCAATTT+GGG - chr3_1:93498448-93498467 None:intergenic 20.0%
!! CAAATTGAAAGAATTCTTAA+TGG + chr3_1:93498505-93498524 Msa0388950:intron 20.0%
!! CTATATTCTTTAGTCATATA+TGG - chr3_1:93498924-93498943 None:intergenic 20.0%
!! AGAAGATTTATAAAAGATGA+GGG - chr3_1:93498970-93498989 None:intergenic 20.0%
!! TTGGATATGAAGTTTAATAA+GGG - chr3_1:93499089-93499108 None:intergenic 20.0%
!! TAGATAATATATATAAGGTG+TGG + chr3_1:93499303-93499322 Msa0388950:intron 20.0%
!! AATAGTCAGTGATATTTAAA+TGG + chr3_1:93500059-93500078 Msa0388950:intron 20.0%
!! TGTTAAAAACAAAAGGATTT+GGG - chr3_1:93500102-93500121 None:intergenic 20.0%
!! TTGTTAAAAACAAAAGGATT+TGG - chr3_1:93500103-93500122 None:intergenic 20.0%
!!! ACATAGAAAATGTCATTTTA+AGG - chr3_1:93500313-93500332 None:intergenic 20.0%
!! ATCTATGATTCAGAAAATTA+AGG + chr3_1:93500647-93500666 Msa0388950:intron 20.0%
!! TCTATGATTCAGAAAATTAA+GGG + chr3_1:93500648-93500667 Msa0388950:intron 20.0%
!! CAGAAAAAGAATAAAAACAA+AGG + chr3_1:93500756-93500775 Msa0388950:intron 20.0%
!! ATTAAGAATAAATAGGGAAA+GGG - chr3_1:93500984-93501003 None:intergenic 20.0%
!! TATTAAGAATAAATAGGGAA+AGG - chr3_1:93500985-93501004 None:intergenic 20.0%
!!! GAGAATATTAAAATTGACTT+TGG - chr3_1:93501074-93501093 None:intergenic 20.0%
!! TCATTAAGAGACATTATAAT+AGG - chr3_1:93501104-93501123 None:intergenic 20.0%
!!! ATGTATTCTATCTTTTGATT+GGG - chr3_1:93502017-93502036 None:intergenic 20.0%
!! TTTAGACATTATAATAGGAT+GGG - chr3_1:93502306-93502325 None:intergenic 20.0%
!! ATTTAGACATTATAATAGGA+TGG - chr3_1:93502307-93502326 None:intergenic 20.0%
!! TCTCATTTAGACATTATAAT+AGG - chr3_1:93502311-93502330 None:intergenic 20.0%
!! TATTATAATGTCTAAATGAG+AGG + chr3_1:93502310-93502329 Msa0388950:intron 20.0%
! AGAGTTGAAGATTGAAATTT+GGG - chr3_1:93496325-93496344 None:intergenic 25.0%
! TCAATGGAATAGAATGAAAT+TGG - chr3_1:93496348-93496367 None:intergenic 25.0%
! ATACTTATGGATGAATTCAA+AGG + chr3_1:93496464-93496483 Msa0388950:CDS 25.0%
! TTCATGTTAGAAATACATTC+TGG + chr3_1:93496576-93496595 Msa0388950:intron 25.0%
!!! ATGATTTTTTTACTCCATGT+AGG + chr3_1:93496730-93496749 Msa0388950:intron 25.0%
! ATAGTGTTTGGTAAAATTAG+CGG + chr3_1:93496797-93496816 Msa0388950:intron 25.0%
!!! CAACAACATAACTTTTTCTT+TGG - chr3_1:93497247-93497266 None:intergenic 25.0%
!!! TGAATTAGCATTTTAGCTAA+TGG + chr3_1:93497296-93497315 Msa0388950:intron 25.0%
!!! GAATTAGCATTTTAGCTAAT+GGG + chr3_1:93497297-93497316 Msa0388950:intron 25.0%
! TTATATCAGTCAAAGAAAGA+GGG - chr3_1:93497817-93497836 None:intergenic 25.0%
! ATTATATCAGTCAAAGAAAG+AGG - chr3_1:93497818-93497837 None:intergenic 25.0%
! GCATAACACAGATAAATATA+AGG - chr3_1:93497900-93497919 None:intergenic 25.0%
!! GTAGTTTTCTTCCTAATATA+CGG + chr3_1:93498044-93498063 Msa0388950:intron 25.0%
! CATTAAGAAGTCTTTCAATT+TGG - chr3_1:93498449-93498468 None:intergenic 25.0%
! CAAATTGAAAGACTTCTTAA+TGG + chr3_1:93498447-93498466 Msa0388950:intron 25.0%
! TGGAAACATTGTATTCAAAA+TGG - chr3_1:93498531-93498550 None:intergenic 25.0%
! TATGCATATATACATAAAGG+TGG - chr3_1:93498551-93498570 None:intergenic 25.0%
! GCTTATGCATATATACATAA+AGG - chr3_1:93498554-93498573 None:intergenic 25.0%
! AAACTATCATTGTATACTGT+AGG - chr3_1:93498812-93498831 None:intergenic 25.0%
! GAAGATTTATAAAAGATGAG+GGG - chr3_1:93498969-93498988 None:intergenic 25.0%
! CAGAAGATTTATAAAAGATG+AGG - chr3_1:93498971-93498990 None:intergenic 25.0%
! CTTGGATATGAAGTTTAATA+AGG - chr3_1:93499090-93499109 None:intergenic 25.0%
! CTTATTAAACTTCATATCCA+AGG + chr3_1:93499088-93499107 Msa0388950:intron 25.0%
!! TGAATCTAGATTTTATGCTT+TGG + chr3_1:93499168-93499187 Msa0388950:intron 25.0%
!! TTGTCTTTGAAAACAAAGTT+GGG - chr3_1:93499243-93499262 None:intergenic 25.0%
!! ATTGTCTTTGAAAACAAAGT+TGG - chr3_1:93499244-93499263 None:intergenic 25.0%
!! ACTAGTCAACTTTTGTTAAA+GGG - chr3_1:93499284-93499303 None:intergenic 25.0%
!! TACTAGTCAACTTTTGTTAA+AGG - chr3_1:93499285-93499304 None:intergenic 25.0%
! AATATATATAAGGTGTGGTT+AGG + chr3_1:93499308-93499327 Msa0388950:intron 25.0%
! ATATATATAAGGTGTGGTTA+GGG + chr3_1:93499309-93499328 Msa0388950:intron 25.0%
! TAAAGTATAATCCTGTAGTT+CGG + chr3_1:93499489-93499508 Msa0388950:intron 25.0%
! ACATAGTCAGTGATATTTAA+AGG + chr3_1:93499973-93499992 Msa0388950:intron 25.0%
! CATAGTCAGTGATATTTAAA+GGG + chr3_1:93499974-93499993 Msa0388950:intron 25.0%
! AAAAACAAAAGAATTTGGGT+TGG - chr3_1:93500013-93500032 None:intergenic 25.0%
!! CTTCACTTGTTAAAAACAAA+AGG - chr3_1:93500024-93500043 None:intergenic 25.0%
! CATCAAGGTATAAATAGTAA+GGG - chr3_1:93500290-93500309 None:intergenic 25.0%
!! CAATTTTTAATGTCCCATTT+TGG - chr3_1:93500430-93500449 None:intergenic 25.0%
!! ATGATAATTTTATAGCTCAC+AGG - chr3_1:93500479-93500498 None:intergenic 25.0%
! CTATGATTCAGAAAATTAAG+GGG + chr3_1:93500649-93500668 Msa0388950:intron 25.0%
! TGAAACTTCACTGTAATTAT+TGG - chr3_1:93500857-93500876 None:intergenic 25.0%
! TAAGAGACATTATAATAGGA+GGG - chr3_1:93501100-93501119 None:intergenic 25.0%
! TTAAGAGACATTATAATAGG+AGG - chr3_1:93501101-93501120 None:intergenic 25.0%
! CAAAAATGTAGAAAAGATGA+AGG - chr3_1:93501385-93501404 None:intergenic 25.0%
! AGAGATCAAAAGAAAAATGA+AGG - chr3_1:93501430-93501449 None:intergenic 25.0%
!! AAACACTAAAACTCCATTTT+TGG + chr3_1:93501870-93501889 Msa0388950:intron 25.0%
! TGTACCAAAAACTTCAAAAT+CGG + chr3_1:93501898-93501917 Msa0388950:intron 25.0%
!! CATGTATTCTATCTTTTGAT+TGG - chr3_1:93502018-93502037 None:intergenic 25.0%
! TTCAGAATTGAATATTACAC+AGG + chr3_1:93502050-93502069 Msa0388950:intron 25.0%
!! GATATTATTAAAACTGGCTT+TGG - chr3_1:93502281-93502300 None:intergenic 25.0%
! TTTAACAAAGAATTGTTGAG+AGG - chr3_1:93502360-93502379 None:intergenic 25.0%
! ATCATTACATGTAAACTTTC+TGG - chr3_1:93502603-93502622 None:intergenic 25.0%
!!! TACATGTTTTATCTGTTTCT+TGG + chr3_1:93502627-93502646 Msa0388950:intron 25.0%
!! CGTTTCTATTTTGTAGTTAT+CGG + chr3_1:93502882-93502901 Msa0388950:three_prime_UTR 25.0%
! TATATGAACACAAAGACTAA+TGG + chr3_1:93502913-93502932 Msa0388950:three_prime_UTR 25.0%
! ATATGAACACAAAGACTAAT+GGG + chr3_1:93502914-93502933 Msa0388950:three_prime_UTR 25.0%
AAGTGTAAAGATTGAAGTGA+AGG - chr3_1:93496248-93496267 None:intergenic 30.0%
! TTAGTTGGATTGGATTGAAT+TGG - chr3_1:93496284-93496303 None:intergenic 30.0%
GAGAGTTGAAGATTGAAATT+TGG - chr3_1:93496326-93496345 None:intergenic 30.0%
! ATAAGCTAGCTTATAGTGTT+TGG + chr3_1:93496785-93496804 Msa0388950:intron 30.0%
GAAATGACATTGAAAAGACA+TGG + chr3_1:93496840-93496859 Msa0388950:intron 30.0%
ATTGAAAAGACATGGTTACT+TGG + chr3_1:93496848-93496867 Msa0388950:intron 30.0%
!! TAAATACCGAAAAGTGCTAT+GGG - chr3_1:93497102-93497121 None:intergenic 30.0%
! AAATCTGAGGAGTTGATTTA+TGG + chr3_1:93497168-93497187 Msa0388950:intron 30.0%
!! ACTTTTTCTTTGGTTATGCA+AGG - chr3_1:93497237-93497256 None:intergenic 30.0%
ATGTTTATGGAGAAGTTGAA+CGG + chr3_1:93497387-93497406 Msa0388950:intron 30.0%
TTAAGACTATCCATGACATA+AGG - chr3_1:93497498-93497517 None:intergenic 30.0%
TCAAACACAGATTGATTACA+TGG - chr3_1:93497546-93497565 None:intergenic 30.0%
! TATTTTCCTGTTGTATGTAC+TGG + chr3_1:93497659-93497678 Msa0388950:intron 30.0%
! TACAACAAGTTACTTTAAGC+TGG - chr3_1:93497734-93497753 None:intergenic 30.0%
!! ACTTGTTGTACACAATTTAG+TGG + chr3_1:93497744-93497763 Msa0388950:intron 30.0%
TGTTTGTGGATATAGAAGTT+CGG + chr3_1:93497774-93497793 Msa0388950:intron 30.0%
TCCTCACAATCACATAAATT+TGG + chr3_1:93497864-93497883 Msa0388950:intron 30.0%
TCCAAATTTATGTGATTGTG+AGG - chr3_1:93497868-93497887 None:intergenic 30.0%
ACAAAAACTGAAAGACAAGA+TGG - chr3_1:93497999-93498018 None:intergenic 30.0%
ACTATACAAAACAGTTTGCA+AGG + chr3_1:93498293-93498312 Msa0388950:intron 30.0%
GAATATCGTCTGAAGATTTA+AGG + chr3_1:93498315-93498334 Msa0388950:CDS 30.0%
! TGCAAGTATTGTACTCAAAA+TGG - chr3_1:93498473-93498492 None:intergenic 30.0%
ATAAAATCTAGATTCAGCCT+TGG - chr3_1:93499164-93499183 None:intergenic 30.0%
AAACAAAGTTGGGTTAAACA+CGG - chr3_1:93499233-93499252 None:intergenic 30.0%
! CAACTTTTGTTAAAGGGTAA+TGG - chr3_1:93499278-93499297 None:intergenic 30.0%
TATATATAAGGTGTGGTTAG+GGG + chr3_1:93499310-93499329 Msa0388950:intron 30.0%
AAAGTATAATCCTGTAGTTC+GGG + chr3_1:93499490-93499509 Msa0388950:intron 30.0%
GTTAGTAGTATTAGCAAAAG+TGG + chr3_1:93499512-93499531 Msa0388950:intron 30.0%
! AGTTACTGTCGAAACATTTT+TGG + chr3_1:93499725-93499744 Msa0388950:CDS 30.0%
TACAACAAGAGCAACAATAA+GGG - chr3_1:93499803-93499822 None:intergenic 30.0%
ATACAACAAGAGCAACAATA+AGG - chr3_1:93499804-93499823 None:intergenic 30.0%
AGGGAGAGTTTAAAAGAAAA+TGG + chr3_1:93499904-93499923 Msa0388950:intron 30.0%
GGGAGAGTTTAAAAGAAAAT+GGG + chr3_1:93499905-93499924 Msa0388950:intron 30.0%
AGAGTTTAAAAGAAAATGGG+TGG + chr3_1:93499908-93499927 Msa0388950:intron 30.0%
GAGTTTAAAAGAAAATGGGT+GGG + chr3_1:93499909-93499928 Msa0388950:intron 30.0%
AAAAACAAAAGGATTTGGGT+TGG - chr3_1:93500098-93500117 None:intergenic 30.0%
TTAACAAGTGAAGTCATTGA+AGG + chr3_1:93500031-93500050 Msa0388950:intron 30.0%
GCATCAAGGTATAAATAGTA+AGG - chr3_1:93500291-93500310 None:intergenic 30.0%
!!! AATGTCATTTTAAGGCATCA+AGG - chr3_1:93500305-93500324 None:intergenic 30.0%
!!! ACGTGTATTTTAGTCATAAG+TGG - chr3_1:93500360-93500379 None:intergenic 30.0%
! TTTTTAATGTCCCATTTTGG+AGG - chr3_1:93500427-93500446 None:intergenic 30.0%
TCATCTTGTAATCAAGTGAA+CGG - chr3_1:93500516-93500535 None:intergenic 30.0%
CAGTTTATTACTTTAACCTC+TGG + chr3_1:93500678-93500697 Msa0388950:intron 30.0%
CAAAGGAAAATAGTAACACT+AGG + chr3_1:93500773-93500792 Msa0388950:intron 30.0%
GTGAAGTTTCAAATGAGATA+AGG + chr3_1:93500866-93500885 Msa0388950:intron 30.0%
!! GAAGGTATTGAGTTGTTATT+GGG - chr3_1:93500940-93500959 None:intergenic 30.0%
!! AGAAGGTATTGAGTTGTTAT+TGG - chr3_1:93500941-93500960 None:intergenic 30.0%
AAGAGACATTATAATAGGAG+GGG - chr3_1:93501099-93501118 None:intergenic 30.0%
TACTTCTAATTATAGAACCC+TGG - chr3_1:93501197-93501216 None:intergenic 30.0%
! TGCGTTTTCAGTTCTTTAAA+TGG + chr3_1:93501494-93501513 Msa0388950:intron 30.0%
AATTGAATCAGAGTCATTGA+AGG - chr3_1:93501603-93501622 None:intergenic 30.0%
AGTTGCTCTTCATAGAATAT+AGG + chr3_1:93501625-93501644 Msa0388950:intron 30.0%
AATTATACCAGTGCAACTAT+CGG + chr3_1:93501731-93501750 Msa0388950:intron 30.0%
TGAAGAAAAAGATGCATAGT+GGG - chr3_1:93501848-93501867 None:intergenic 30.0%
ATGAAGAAAAAGATGCATAG+TGG - chr3_1:93501849-93501868 None:intergenic 30.0%
!! TTTGTACCTGTTTCTATCAA+CGG - chr3_1:93501935-93501954 None:intergenic 30.0%
TAGAATACATGCATAAACAC+TGG + chr3_1:93502027-93502046 Msa0388950:intron 30.0%
ATTGAATATTACACAGGAAC+TGG + chr3_1:93502056-93502075 Msa0388950:intron 30.0%
GAAATACATAGACATGGTTT+CGG + chr3_1:93502078-93502097 Msa0388950:intron 30.0%
TGGGACGATATTATTAAAAC+TGG - chr3_1:93502287-93502306 None:intergenic 30.0%
AAGTTAACCTAGTGCAAAAA+AGG + chr3_1:93502403-93502422 Msa0388950:intron 30.0%
!!! AACAAAACCTTTTTTGCACT+AGG - chr3_1:93502413-93502432 None:intergenic 30.0%
! TTTTGTGTTTGTTCACAGAA+AGG + chr3_1:93502459-93502478 Msa0388950:intron 30.0%
! GAGTATTTAGCAGATGTTTT+TGG + chr3_1:93502837-93502856 Msa0388950:three_prime_UTR 30.0%
! TATTGCATGATACTTTTGCA+TGG - chr3_1:93503002-93503021 None:intergenic 30.0%
TGTATTCATTCATTCATCCC+TGG - chr3_1:93496169-93496188 None:intergenic 35.0%
GGATGAATGAATGAATACAG+AGG + chr3_1:93496170-93496189 Msa0388950:five_prime_UTR 35.0%
CAGTCAGTGATTGATTGATT+AGG + chr3_1:93496201-93496220 Msa0388950:five_prime_UTR 35.0%
! AGATTGAAGTGAAGGTGTAA+AGG - chr3_1:93496240-93496259 None:intergenic 35.0%
AAATTTGGGAATACCTGTCA+TGG - chr3_1:93496311-93496330 None:intergenic 35.0%
! ACCAAAAAGGGTTAGCAAAA+CGG - chr3_1:93496378-93496397 None:intergenic 35.0%
AGAAATGGAGATTGAAGCAT+TGG + chr3_1:93496436-93496455 Msa0388950:CDS 35.0%
! AGCATTGGAAGCTATACTTA+TGG + chr3_1:93496451-93496470 Msa0388950:CDS 35.0%
GAAATACATTCTGGTGAAAG+TGG + chr3_1:93496585-93496604 Msa0388950:intron 35.0%
!! TTTAATCTGGAAGCACCTAT+TGG - chr3_1:93496622-93496641 None:intergenic 35.0%
TTTACCAAATAGAGCCTACA+TGG - chr3_1:93496747-93496766 None:intergenic 35.0%
AGACTATCGAAAACTGCTAT+AGG + chr3_1:93496953-93496972 Msa0388950:intron 35.0%
ACAAGCTCATGAGAAAACTA+CGG + chr3_1:93496992-93497011 Msa0388950:intron 35.0%
!! GTAAATACCGAAAAGTGCTA+TGG - chr3_1:93497103-93497122 None:intergenic 35.0%
TGTTTATGGAGAAGTTGAAC+GGG + chr3_1:93497388-93497407 Msa0388950:intron 35.0%
CTCTTGGTATTTATCCAAAC+TGG + chr3_1:93497472-93497491 Msa0388950:intron 35.0%
ATTCATCCAGTACATACAAC+AGG - chr3_1:93497668-93497687 None:intergenic 35.0%
CAAAGAAAGAGGGAAAGTAA+TGG - chr3_1:93497807-93497826 None:intergenic 35.0%
TTTATGTGATTGTGAGGAAG+AGG - chr3_1:93497862-93497881 None:intergenic 35.0%
TCTGTGTTATGCAATTGTAC+AGG + chr3_1:93497908-93497927 Msa0388950:intron 35.0%
ATATCAAAGAGGAAGAAACC+TGG - chr3_1:93497963-93497982 None:intergenic 35.0%
GAAAGACAAACTTCAACAAG+AGG + chr3_1:93498343-93498362 Msa0388950:CDS 35.0%
TTTGAGTACAATACTTGCAC+TGG + chr3_1:93498474-93498493 Msa0388950:intron 35.0%
!! ATTTGTTGTGCATACTTGTC+AGG + chr3_1:93498615-93498634 Msa0388950:intron 35.0%
AGGCATTCTTACATCTTCTT+TGG - chr3_1:93498792-93498811 None:intergenic 35.0%
! ATTTCCGAGCATTTGTTACA+TGG + chr3_1:93498888-93498907 Msa0388950:intron 35.0%
CATCGATGTTAGAAGGATTA+AGG + chr3_1:93498997-93499016 Msa0388950:intron 35.0%
! ACTATGACTTTCACTAGTCT+AGG - chr3_1:93499060-93499079 None:intergenic 35.0%
ACTTCATATCCAAGGTTCAT+TGG + chr3_1:93499096-93499115 Msa0388950:intron 35.0%
!!! AAGATCACTGATTTTCACCA+AGG + chr3_1:93499144-93499163 Msa0388950:intron 35.0%
AACAAAGTTGGGTTAAACAC+GGG - chr3_1:93499232-93499251 None:intergenic 35.0%
CTTCAATTGTGTTAAACCTC+TGG + chr3_1:93499353-93499372 Msa0388950:intron 35.0%
! AAATGTTGCTTGGAAAAAGC+TGG + chr3_1:93499648-93499667 Msa0388950:intron 35.0%
CCACTATCTAAGAATGTTGA+AGG - chr3_1:93499689-93499708 None:intergenic 35.0%
CCTTCAACATTCTTAGATAG+TGG + chr3_1:93499686-93499705 Msa0388950:intron 35.0%
ACAACAAGAGCAACAATAAG+GGG - chr3_1:93499802-93499821 None:intergenic 35.0%
GCAATCATGACAAATTGGTT+TGG - chr3_1:93500175-93500194 None:intergenic 35.0%
AACCAATTTGTCATGATTGC+AGG + chr3_1:93500175-93500194 Msa0388950:intron 35.0%
TTACAAGATGACCATACTAG+TGG + chr3_1:93500525-93500544 Msa0388950:intron 35.0%
!! TCCTGGCTTTTGAATTTGTT+AGG + chr3_1:93500556-93500575 Msa0388950:intron 35.0%
TCCTAACAAATTCAAAAGCC+AGG - chr3_1:93500560-93500579 None:intergenic 35.0%
! TAGACTAGTTGGATAGAAAC+TGG + chr3_1:93500623-93500642 Msa0388950:intron 35.0%
!! TTTTGAGAATCATTCTCCAG+AGG - chr3_1:93500697-93500716 None:intergenic 35.0%
GAGAATGATTCTCAAAACAG+AGG + chr3_1:93500700-93500719 Msa0388950:intron 35.0%
TTTCAAATGAGATAAGGCAC+AGG + chr3_1:93500872-93500891 Msa0388950:intron 35.0%
TTCAAATGAGATAAGGCACA+GGG + chr3_1:93500873-93500892 Msa0388950:intron 35.0%
! GTATTGAGTTGTTATTGGGT+GGG - chr3_1:93500936-93500955 None:intergenic 35.0%
!!! ACAAGGTGAAACTTTTTTGG+GGG - chr3_1:93501144-93501163 None:intergenic 35.0%
!!! GACAAGGTGAAACTTTTTTG+GGG - chr3_1:93501145-93501164 None:intergenic 35.0%
!!! GGACAAGGTGAAACTTTTTT+GGG - chr3_1:93501146-93501165 None:intergenic 35.0%
!!! AGGACAAGGTGAAACTTTTT+TGG - chr3_1:93501147-93501166 None:intergenic 35.0%
GTGAAGGAAAAGGAAATGAA+GGG - chr3_1:93501521-93501540 None:intergenic 35.0%
AGTGAAGGAAAAGGAAATGA+AGG - chr3_1:93501522-93501541 None:intergenic 35.0%
GAGAATGAAAGTGAAGGAAA+AGG - chr3_1:93501531-93501550 None:intergenic 35.0%
GTAGAAGAGAATGAAAGTGA+AGG - chr3_1:93501537-93501556 None:intergenic 35.0%
CGTTATTGCTCGCATTTATT+TGG - chr3_1:93501681-93501700 None:intergenic 35.0%
GGTATAATTGACGTCATAAC+AGG - chr3_1:93501720-93501739 None:intergenic 35.0%
TTGGTACATCATGCCAAAAA+TGG - chr3_1:93501886-93501905 None:intergenic 35.0%
!!! AGCACCGATTTTGAAGTTTT+TGG - chr3_1:93501905-93501924 None:intergenic 35.0%
!! TTGTACCTGTTTCTATCAAC+GGG - chr3_1:93501934-93501953 None:intergenic 35.0%
GACTTGTATTGAGAAATCTC+TGG + chr3_1:93501979-93501998 Msa0388950:intron 35.0%
GAACTGGAAATACATAGACA+TGG + chr3_1:93502072-93502091 Msa0388950:intron 35.0%
TAGAGTGTGGTTATTTGAGT+GGG - chr3_1:93502127-93502146 None:intergenic 35.0%
TTAGAGTGTGGTTATTTGAG+TGG - chr3_1:93502128-93502147 None:intergenic 35.0%
GTTATCAAGAAGTTAGAGTG+TGG - chr3_1:93502140-93502159 None:intergenic 35.0%
!! ATCCTTTCGCTATTTCTTCT+TGG + chr3_1:93502169-93502188 Msa0388950:intron 35.0%
AACCAAGAAGAAATAGCGAA+AGG - chr3_1:93502174-93502193 None:intergenic 35.0%
!! CATTGACTTTGATGATGATG+AGG + chr3_1:93502527-93502546 Msa0388950:CDS 35.0%
!! CTTTCCTTGTTGTCTTTTGA+GGG + chr3_1:93502769-93502788 Msa0388950:three_prime_UTR 35.0%
TCATGGTGAGTTAGTTGGAT+TGG - chr3_1:93496294-93496313 None:intergenic 40.0%
! ACCGTTTTGCTAACCCTTTT+TGG + chr3_1:93496374-93496393 Msa0388950:intron 40.0%
GTGGTTTAAGCACTTCCAAT+AGG + chr3_1:93496604-93496623 Msa0388950:CDS 40.0%
!! CCTGAGCAGTGATTTTAATC+TGG - chr3_1:93496635-93496654 None:intergenic 40.0%
CCAGATTAAAATCACTGCTC+AGG + chr3_1:93496632-93496651 Msa0388950:CDS 40.0%
!! TCTTGGGCATGCTTTTAGTT+CGG + chr3_1:93496702-93496721 Msa0388950:intron 40.0%
TACTCCATGTAGGCTCTATT+TGG + chr3_1:93496740-93496759 Msa0388950:intron 40.0%
!! AAAAGTGCTATGGGTCTGTT+TGG - chr3_1:93497093-93497112 None:intergenic 40.0%
! AACAGACCCATAGCACTTTT+CGG + chr3_1:93497093-93497112 Msa0388950:intron 40.0%
! GTTGCTGTTGTTGAAGTCTA+TGG + chr3_1:93497266-93497285 Msa0388950:intron 40.0%
GTGAAAAGTCACGATTCTCT+TGG + chr3_1:93497456-93497475 Msa0388950:intron 40.0%
TTAGTGGAGTTCAGTGTTTG+TGG + chr3_1:93497760-93497779 Msa0388950:intron 40.0%
GTGTTATGCAATTGTACAGG+AGG + chr3_1:93497911-93497930 Msa0388950:intron 40.0%
GACGAGTCAAATACTAATCC+AGG + chr3_1:93497942-93497961 Msa0388950:CDS 40.0%
! TTTTGTTGCAGCTCAACAAC+TGG + chr3_1:93498097-93498116 Msa0388950:intron 40.0%
GTACGGCAGTTGACATTAAT+TGG - chr3_1:93498217-93498236 None:intergenic 40.0%
GTTTATTGCTTGAGCTGAAC+TGG + chr3_1:93498393-93498412 Msa0388950:intron 40.0%
ATCTTGAGTTCCATACCCAT+AGG - chr3_1:93498597-93498616 None:intergenic 40.0%
TGTGCATACTTGTCAGGTTA+TGG + chr3_1:93498621-93498640 Msa0388950:intron 40.0%
ATGCAAAACTTGTGTTCCAC+AGG + chr3_1:93498652-93498671 Msa0388950:intron 40.0%
CTCTTTAGCTGAGCTAACAA+GGG - chr3_1:93498711-93498730 None:intergenic 40.0%
ACTCTTTAGCTGAGCTAACA+AGG - chr3_1:93498712-93498731 None:intergenic 40.0%
TTGTTAGCTCAGCTAAAGAG+TGG + chr3_1:93498711-93498730 Msa0388950:CDS 40.0%
ACGACCATGTAACAAATGCT+CGG - chr3_1:93498895-93498914 None:intergenic 40.0%
GAAGCTTCATCGATGTTAGA+AGG + chr3_1:93498990-93499009 Msa0388950:intron 40.0%
AGGATTAAGGTTGCATGACA+TGG + chr3_1:93499010-93499029 Msa0388950:intron 40.0%
GACATGGCAGGATACTTATT+AGG + chr3_1:93499026-93499045 Msa0388950:intron 40.0%
! TTTCACTAGTCTAGGCACAT+TGG - chr3_1:93499052-93499071 None:intergenic 40.0%
ACTCACTAACCAATGAACCT+TGG - chr3_1:93499108-93499127 None:intergenic 40.0%
! ATTGTGTTAAACCTCTGGAG+TGG + chr3_1:93499358-93499377 Msa0388950:intron 40.0%
!! TTGTGTTAAACCTCTGGAGT+GGG + chr3_1:93499359-93499378 Msa0388950:intron 40.0%
TCATGATGCTCATCTACCAT+GGG - chr3_1:93499428-93499447 None:intergenic 40.0%
ATCATGATGCTCATCTACCA+TGG - chr3_1:93499429-93499448 None:intergenic 40.0%
ATACTACTAACCCGAACTAC+AGG - chr3_1:93499503-93499522 None:intergenic 40.0%
CACCACGTAAGAATAACAGA+AGG - chr3_1:93499557-93499576 None:intergenic 40.0%
!! TTCGTCTCTGAAATGTTGCT+TGG + chr3_1:93499638-93499657 Msa0388950:intron 40.0%
! TCTTAGATAGTGGTACCTCA+TGG + chr3_1:93499696-93499715 Msa0388950:intron 40.0%
!!! CTGTCGAAACATTTTTGGCA+TGG + chr3_1:93499730-93499749 Msa0388950:CDS 40.0%
!!! TCGAAACATTTTTGGCATGG+AGG + chr3_1:93499733-93499752 Msa0388950:CDS 40.0%
!!! CGAAACATTTTTGGCATGGA+GGG + chr3_1:93499734-93499753 Msa0388950:CDS 40.0%
TGTGACACCTGATTATCAGT+AGG + chr3_1:93499852-93499871 Msa0388950:intron 40.0%
GTGACACCTGATTATCAGTA+GGG + chr3_1:93499853-93499872 Msa0388950:intron 40.0%
! AGTAGGGCTAGGGATTTTAA+GGG + chr3_1:93499869-93499888 Msa0388950:intron 40.0%
AGCCTGCAATCATGACAAAT+TGG - chr3_1:93500180-93500199 None:intergenic 40.0%
TCGAAGGAAAAGAAACTCAC+TGG + chr3_1:93500225-93500244 Msa0388950:CDS 40.0%
!! AATTCTTGGTGCCTCCAAAA+TGG + chr3_1:93500413-93500432 Msa0388950:intron 40.0%
!! ATTCTTGGTGCCTCCAAAAT+GGG + chr3_1:93500414-93500433 Msa0388950:intron 40.0%
TAACCACACGTTAGACTAGT+TGG + chr3_1:93500612-93500631 Msa0388950:intron 40.0%
! TATCCAACTAGTCTAACGTG+TGG - chr3_1:93500618-93500637 None:intergenic 40.0%
! GGTATTGAGTTGTTATTGGG+TGG - chr3_1:93500937-93500956 None:intergenic 40.0%
!!! CAAGGTGAAACTTTTTTGGG+GGG - chr3_1:93501143-93501162 None:intergenic 40.0%
AAAAGTTTCACCTTGTCCTC+AGG + chr3_1:93501148-93501167 Msa0388950:intron 40.0%
AAAGTTTCACCTTGTCCTCA+GGG + chr3_1:93501149-93501168 Msa0388950:intron 40.0%
TGTGTGGTTACGAGGTAATT+TGG - chr3_1:93501257-93501276 None:intergenic 40.0%
CTGAAAACGCACAAAGAAGA+GGG - chr3_1:93501485-93501504 None:intergenic 40.0%
ACTGAAAACGCACAAAGAAG+AGG - chr3_1:93501486-93501505 None:intergenic 40.0%
GCATTTCAAGCCAGAATATC+AGG - chr3_1:93501659-93501678 None:intergenic 40.0%
TGACGTCATAACAGGTTAGT+TGG - chr3_1:93501712-93501731 None:intergenic 40.0%
! TGATACCCGTTGATAGAAAC+AGG + chr3_1:93501926-93501945 Msa0388950:intron 40.0%
AGAGAACCAAACTCTAACCA+TGG - chr3_1:93502104-93502123 None:intergenic 40.0%
! GATGATGATGAGGATTTCGA+AGG + chr3_1:93502537-93502556 Msa0388950:CDS 40.0%
!! TGCAATTTAACTTGCTCGCA+TGG - chr3_1:93502719-93502738 None:intergenic 40.0%
!! GCTTTCCTTGTTGTCTTTTG+AGG + chr3_1:93502768-93502787 Msa0388950:three_prime_UTR 40.0%
AACTCCCTCAAAAGACAACA+AGG - chr3_1:93502776-93502795 None:intergenic 40.0%
AAAACAAATCCCCCTCATGA+TGG - chr3_1:93502800-93502819 None:intergenic 40.0%
TGGCGTGTGACAATGTATTA+AGG + chr3_1:93502857-93502876 Msa0388950:three_prime_UTR 40.0%
TGAACACAAAGACTAATGGG+TGG + chr3_1:93502917-93502936 Msa0388950:three_prime_UTR 40.0%
AGGTGTAAAGGTCGAAGAAG+AGG - chr3_1:93496228-93496247 None:intergenic 45.0%
TCCAACTAACTCACCATGAC+AGG + chr3_1:93496295-93496314 Msa0388950:exon 45.0%
ACCTGTCATGGTGAGTTAGT+TGG - chr3_1:93496299-93496318 None:intergenic 45.0%
!! GCAAAACGGTGTCGTTTCAA+TGG - chr3_1:93496364-93496383 None:intergenic 45.0%
CTACGCGCAAGAACAAGAAA+TGG + chr3_1:93496421-93496440 Msa0388950:CDS 45.0%
!! TCCAAACTGGCCTTATGTCA+TGG + chr3_1:93497485-93497504 Msa0388950:intron 45.0%
TCCATGACATAAGGCCAGTT+TGG - chr3_1:93497489-93497508 None:intergenic 45.0%
GCAATTGTACAGGAGGAAGA+TGG + chr3_1:93497918-93497937 Msa0388950:intron 45.0%
GACCTGCTCACATTCAAAAG+CGG - chr3_1:93498164-93498183 None:intergenic 45.0%
! CCAAGATTTTCAGATGCCTG+TGG - chr3_1:93498671-93498690 None:intergenic 45.0%
CCACAGGCATCTGAAAATCT+TGG + chr3_1:93498668-93498687 Msa0388950:intron 45.0%
GGCATCTGAAAATCTTGGCA+TGG + chr3_1:93498673-93498692 Msa0388950:intron 45.0%
CTAAAGAGTGGTTGACTGAG+CGG + chr3_1:93498723-93498742 Msa0388950:CDS 45.0%
CGGTATTGTGAAGACTCAGA+TGG + chr3_1:93498743-93498762 Msa0388950:CDS 45.0%
TTAAGGTTGCATGACATGGC+AGG + chr3_1:93499014-93499033 Msa0388950:intron 45.0%
!! GGTTAGTGAGTGCTGAGTAA+TGG + chr3_1:93499117-93499136 Msa0388950:intron 45.0%
ATTGAAGTGCAATCCAACCC+TGG - chr3_1:93499340-93499359 None:intergenic 45.0%
!! TGTGTTAAACCTCTGGAGTG+GGG + chr3_1:93499360-93499379 Msa0388950:intron 45.0%
CGCCTTCTGTTATTCTTACG+TGG + chr3_1:93499552-93499571 Msa0388950:intron 45.0%
ACAGTAACTGCTTCTCCATG+AGG - chr3_1:93499714-93499733 None:intergenic 45.0%
!!! CATTTTTGGCATGGAGGGAA+AGG + chr3_1:93499739-93499758 Msa0388950:CDS 45.0%
GCAACAATAAGGGGCTTACT+TGG - chr3_1:93499793-93499812 None:intergenic 45.0%
ACCTGATTATCAGTAGGGCT+AGG + chr3_1:93499858-93499877 Msa0388950:intron 45.0%
CCTGATTATCAGTAGGGCTA+GGG + chr3_1:93499859-93499878 Msa0388950:intron 45.0%
! CAGTAGGGCTAGGGATTTTA+AGG + chr3_1:93499868-93499887 Msa0388950:intron 45.0%
TTTAAGGGCTTACGCATCTC+AGG + chr3_1:93499884-93499903 Msa0388950:intron 45.0%
TTAAGGGCTTACGCATCTCA+GGG + chr3_1:93499885-93499904 Msa0388950:intron 45.0%
GACAGTGGTTTGAAAGTGGA+AGG + chr3_1:93500250-93500269 Msa0388950:CDS 45.0%
GTGGTTTGAAAGTGGAAGGA+TGG + chr3_1:93500254-93500273 Msa0388950:CDS 45.0%
GGACGCATTAACCACTAGTA+TGG - chr3_1:93500539-93500558 None:intergenic 45.0%
TACTAGTGGTTAATGCGTCC+TGG + chr3_1:93500539-93500558 Msa0388950:intron 45.0%
!! GGCATAGTGGGTTATCTAGA+AGG - chr3_1:93500958-93500977 None:intergenic 45.0%
TCTAGATAACCCACTATGCC+TGG + chr3_1:93500958-93500977 Msa0388950:intron 45.0%
GAATAAATAGGGAAAGGGCC+AGG - chr3_1:93500979-93500998 None:intergenic 45.0%
GGTTGCATTAGTGTCTACCA+GGG + chr3_1:93501177-93501196 Msa0388950:intron 45.0%
AGAAGTAGAGTGACAGAGCA+TGG + chr3_1:93501210-93501229 Msa0388950:intron 45.0%
GTGGTTACGAGGTAATTTGG+TGG - chr3_1:93501254-93501273 None:intergenic 45.0%
! ACGACTTTTGTGTGGTTACG+AGG - chr3_1:93501265-93501284 None:intergenic 45.0%
CGTAACCACACAAAAGTCGT+TGG + chr3_1:93501265-93501284 Msa0388950:intron 45.0%
! CAGTTATAGGCTTTTGTCGC+TGG - chr3_1:93501295-93501314 None:intergenic 45.0%
CAGCGACAAAAGCCTATAAC+TGG + chr3_1:93501293-93501312 Msa0388950:intron 45.0%
CGACAAAAGCCTATAACTGG+CGG + chr3_1:93501296-93501315 Msa0388950:intron 45.0%
TCAGAGTCATTGAAGGCTCA+CGG - chr3_1:93501596-93501615 None:intergenic 45.0%
GGCAATACGTCCTGATATTC+TGG + chr3_1:93501646-93501665 Msa0388950:intron 45.0%
CGTAACTTCAACACCTCTGT+CGG + chr3_1:93501769-93501788 Msa0388950:intron 45.0%
AAAGAGGGAAACATCAGAGG+AGG - chr3_1:93501800-93501819 None:intergenic 45.0%
GGAAAAGAGGGAAACATCAG+AGG - chr3_1:93501803-93501822 None:intergenic 45.0%
GAGGAACGTTTCGGAAAAGA+GGG - chr3_1:93501815-93501834 None:intergenic 45.0%
TGAGGAACGTTTCGGAAAAG+AGG - chr3_1:93501816-93501835 None:intergenic 45.0%
! GCTAGCATTGAGGAACGTTT+CGG - chr3_1:93501824-93501843 None:intergenic 45.0%
TTTCGGCCATGGTTAGAGTT+TGG + chr3_1:93502095-93502114 Msa0388950:intron 45.0%
AGCTGTTGTCACGGAAGATT+TGG + chr3_1:93502485-93502504 Msa0388950:CDS 45.0%
TGTCACGGAAGATTTGGATG+AGG + chr3_1:93502491-93502510 Msa0388950:CDS 45.0%
AGATTTGGATGAGGAGGATG+AGG + chr3_1:93502500-93502519 Msa0388950:CDS 45.0%
TTGAGGGAGTTTCCATCATG+AGG + chr3_1:93502785-93502804 Msa0388950:three_prime_UTR 45.0%
TGAGGGAGTTTCCATCATGA+GGG + chr3_1:93502786-93502805 Msa0388950:three_prime_UTR 45.0%
!!! TTTTATTAAAATAAATAGAT+GGG - chr3_1:93496503-93496522 None:intergenic 5.0%
!!! TTTTTATTAAAATAAATAGA+TGG - chr3_1:93496504-93496523 None:intergenic 5.0%
TTCAAAAGCGGAGGTTCGTC+TGG - chr3_1:93498152-93498171 None:intergenic 50.0%
CTGCTCACATTCAAAAGCGG+AGG - chr3_1:93498161-93498180 None:intergenic 50.0%
!! CTCCGCTTTTGAATGTGAGC+AGG + chr3_1:93498159-93498178 Msa0388950:CDS 50.0%
TCATGCTGCGCAATGACCTA+TGG + chr3_1:93498578-93498597 Msa0388950:intron 50.0%
CATGCTGCGCAATGACCTAT+GGG + chr3_1:93498579-93498598 Msa0388950:intron 50.0%
TGCGCAATGACCTATGGGTA+TGG + chr3_1:93498584-93498603 Msa0388950:intron 50.0%
! TGGTGATGCTGAAGCAGAAG+AGG + chr3_1:93498763-93498782 Msa0388950:CDS 50.0%
TGATGCTGAAGCAGAAGAGG+CGG + chr3_1:93498766-93498785 Msa0388950:CDS 50.0%
TCCAGTTATTGCCATGCCCA+TGG + chr3_1:93499409-93499428 Msa0388950:intron 50.0%
ACCATGGGCATGGCAATAAC+TGG - chr3_1:93499413-93499432 None:intergenic 50.0%
ATGCTCATCTACCATGGGCA+TGG - chr3_1:93499423-93499442 None:intergenic 50.0%
CCCTAGCCCTACTGATAATC+AGG - chr3_1:93499862-93499881 None:intergenic 50.0%
GAAGTAGCAAGCACAGACTC+TGG - chr3_1:93500207-93500226 None:intergenic 50.0%
! GTCTGTGCTTGCTACTTCGA+AGG + chr3_1:93500209-93500228 Msa0388950:CDS 50.0%
AGAAACTCACTGGCAGACAG+TGG + chr3_1:93500235-93500254 Msa0388950:CDS 50.0%
GGCAGACAGTGGTTTGAAAG+TGG + chr3_1:93500246-93500265 Msa0388950:CDS 50.0%
TTGGCGTGCATGCAACATTC+TGG - chr3_1:93500838-93500857 None:intergenic 50.0%
! GAGTTGTTATTGGGTGGGAG+AGG - chr3_1:93500931-93500950 None:intergenic 50.0%
TAATGCAACCCTTCACCCTG+AGG - chr3_1:93501167-93501186 None:intergenic 50.0%
GGGTTGCATTAGTGTCTACC+AGG + chr3_1:93501176-93501195 Msa0388950:intron 50.0%
! GAGCACCAACGACTTTTGTG+TGG - chr3_1:93501273-93501292 None:intergenic 50.0%
AGCCTATAACTGGCGGAGAA+TGG + chr3_1:93501303-93501322 Msa0388950:intron 50.0%
GTCCATTCTCCGCCAGTTAT+AGG - chr3_1:93501308-93501327 None:intergenic 50.0%
! TAACTGGCGGAGAATGGACT+CGG + chr3_1:93501309-93501328 Msa0388950:intron 50.0%
! GAATGGACTCGGCAACGAAA+TGG + chr3_1:93501320-93501339 Msa0388950:intron 50.0%
ATGAAGGAGTCCCTTCCTGT+GGG - chr3_1:93501369-93501388 None:intergenic 50.0%
GTGTTCACCGATAGTTGCAC+TGG - chr3_1:93501741-93501760 None:intergenic 50.0%
!! GAGGTGTTGAAGTTACGCAG+AGG - chr3_1:93501766-93501785 None:intergenic 50.0%
!! CATAGTGGGTGCTAGCATTG+AGG - chr3_1:93501834-93501853 None:intergenic 50.0%
CATAGACATGGTTTCGGCCA+TGG + chr3_1:93502084-93502103 Msa0388950:intron 50.0%
! GAAAGGTGCAGCTGTTGTCA+CGG + chr3_1:93502476-93502495 Msa0388950:intron 50.0%
CACGGAAGATTTGGATGAGG+AGG + chr3_1:93502494-93502513 Msa0388950:CDS 50.0%
TGCTCGCATGGAAGAATGTG+TGG - chr3_1:93502707-93502726 None:intergenic 50.0%
GAGGGAGTTTCCATCATGAG+GGG + chr3_1:93502787-93502806 Msa0388950:three_prime_UTR 50.0%
AGGGAGTTTCCATCATGAGG+GGG + chr3_1:93502788-93502807 Msa0388950:three_prime_UTR 50.0%
!! GTGTGGTTAGGGGTGTTCCA+GGG + chr3_1:93499320-93499339 Msa0388950:intron 55.0%
TCACCTTGTCCTCAGGGTGA+AGG + chr3_1:93501155-93501174 Msa0388950:intron 55.0%
CACCTTGTCCTCAGGGTGAA+GGG + chr3_1:93501156-93501175 Msa0388950:intron 55.0%
AACCCTTCACCCTGAGGACA+AGG - chr3_1:93501161-93501180 None:intergenic 55.0%
TGACAGAGCATGGCAGCAGT+AGG + chr3_1:93501220-93501239 Msa0388950:intron 55.0%
TGGACTCGGCAACGAAATGG+CGG + chr3_1:93501323-93501342 Msa0388950:intron 55.0%
GCAACGAAATGGCGGTTGGA+TGG + chr3_1:93501331-93501350 Msa0388950:intron 55.0%
TGGCGGTTGGATGGACACTA+TGG + chr3_1:93501340-93501359 Msa0388950:intron 55.0%
ACTATGGTGCCCCACAGGAA+GGG + chr3_1:93501356-93501375 Msa0388950:intron 55.0%
TGAAGGAGTCCCTTCCTGTG+GGG - chr3_1:93501368-93501387 None:intergenic 55.0%
GATGAAGGAGTCCCTTCCTG+TGG - chr3_1:93501370-93501389 None:intergenic 55.0%
GCTCACGGTTCATGCGATGA+AGG - chr3_1:93501581-93501600 None:intergenic 55.0%
AGAGGAGGAGAAACCGACAG+AGG - chr3_1:93501785-93501804 None:intergenic 55.0%
!! GGTGTGGTTAGGGGTGTTCC+AGG + chr3_1:93499319-93499338 Msa0388950:intron 60.0%
!! GGTTAGGGGTGTTCCAGGGT+TGG + chr3_1:93499324-93499343 Msa0388950:intron 60.0%
ACACACACACCCCACTCCAG+AGG - chr3_1:93499372-93499391 None:intergenic 60.0%
GGGAAAGGGCCAGGCATAGT+GGG - chr3_1:93500970-93500989 None:intergenic 60.0%
AGGGAAAGGGCCAGGCATAG+TGG - chr3_1:93500971-93500990 None:intergenic 60.0%
CTCGGCAACGAAATGGCGGT+TGG + chr3_1:93501327-93501346 Msa0388950:intron 60.0%
TGGACACTATGGTGCCCCAC+AGG + chr3_1:93501351-93501370 Msa0388950:intron 60.0%
CACTATGGTGCCCCACAGGA+AGG + chr3_1:93501355-93501374 Msa0388950:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 93496164 93503037 93496164 ID=Msa0388950;Name=Msa0388950
chr3_1 mRNA 93496164 93503037 93496164 ID=Msa0388950-mRNA-1;Parent=Msa0388950;Name=Msa0388950-mRNA-1;_AED=0.13;_eAED=0.13;_QI=146|1|1|1|1|1|11|305|254
chr3_1 exon 93496164 93496316 93496164 ID=Msa0388950-mRNA-1:exon:26467;Parent=Msa0388950-mRNA-1
chr3_1 exon 93496420 93496485 93496420 ID=Msa0388950-mRNA-1:exon:26468;Parent=Msa0388950-mRNA-1
chr3_1 exon 93496586 93496653 93496586 ID=Msa0388950-mRNA-1:exon:26469;Parent=Msa0388950-mRNA-1
chr3_1 exon 93497930 93497963 93497930 ID=Msa0388950-mRNA-1:exon:26470;Parent=Msa0388950-mRNA-1
chr3_1 exon 93498108 93498180 93498108 ID=Msa0388950-mRNA-1:exon:26471;Parent=Msa0388950-mRNA-1
chr3_1 exon 93498307 93498364 93498307 ID=Msa0388950-mRNA-1:exon:26472;Parent=Msa0388950-mRNA-1
chr3_1 exon 93498674 93498799 93498674 ID=Msa0388950-mRNA-1:exon:26473;Parent=Msa0388950-mRNA-1
chr3_1 exon 93499702 93499793 93499702 ID=Msa0388950-mRNA-1:exon:26474;Parent=Msa0388950-mRNA-1
chr3_1 exon 93500197 93500275 93500197 ID=Msa0388950-mRNA-1:exon:26475;Parent=Msa0388950-mRNA-1
chr3_1 exon 93502477 93502558 93502477 ID=Msa0388950-mRNA-1:exon:26476;Parent=Msa0388950-mRNA-1
chr3_1 exon 93502653 93503037 93502653 ID=Msa0388950-mRNA-1:exon:26477;Parent=Msa0388950-mRNA-1
chr3_1 five_prime_UTR 93496164 93496309 93496164 ID=Msa0388950-mRNA-1:five_prime_utr;Parent=Msa0388950-mRNA-1
chr3_1 CDS 93496310 93496316 93496310 ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1 CDS 93496420 93496485 93496420 ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1 CDS 93496586 93496653 93496586 ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1 CDS 93497930 93497963 93497930 ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1 CDS 93498108 93498180 93498108 ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1 CDS 93498307 93498364 93498307 ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1 CDS 93498674 93498799 93498674 ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1 CDS 93499702 93499793 93499702 ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1 CDS 93500197 93500275 93500197 ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1 CDS 93502477 93502558 93502477 ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1 CDS 93502653 93502732 93502653 ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1 three_prime_UTR 93502733 93503037 93502733 ID=Msa0388950-mRNA-1:three_prime_utr;Parent=Msa0388950-mRNA-1
Gene Sequence

>Msa0388950

ATGACAGACTACGCGCAAGAACAAGAAATGGAGATTGAAGCATTGGAAGCTATACTTATGGATGAATTCAAAGAAATACATTCTGGTGAAAGTGGTTTAAGCACTTCCAATAGGTGCTTCCAGATTAAAATCACTGCTCAGGAGGAAGATGGAGACGAGTCAAATACTAATCCAGCTCAACAACTGGCTTTGATCTTCGCGCACACAGAAAAATATCCAGACGAACCTCCGCTTTTGAATGTGAGCAGTTTGCAAGGAATATCGTCTGAAGATTTAAGGATTTTGAAAGACAAACTTCAACAAGAGGCATCTGAAAATCTTGGCATGGCTATGATTTACACCCTTGTTAGCTCAGCTAAAGAGTGGTTGACTGAGCGGTATTGTGAAGACTCAGATGGTGATGCTGAAGCAGAAGAGGCGGCCAAAGAAGATATAGTGGTACCTCATGGAGAAGCAGTTACTGTCGAAACATTTTTGGCATGGAGGGAAAGGTTTGAAGCTGAACTAGCACTTGAACGAGCCAAGCTAATGCCAGAGTCTGTGCTTGCTACTTCGAAGGAAAAGAAACTCACTGGCAGACAGTGGTTTGAAAGTGGAAGGATGAAAGGTGCAGCTGTTGTCACGGAAGATTTGGATGAGGAGGATGAGGAAGACATTGACTTTGATGATGATGAGGATTTCGAAGATGATGAAGATGATATGCTTGAGCATTATCTAGCTGAAAAATCTGATTCATCCACACATTCTTCCATGCGAGCAAGTTAA

Protein sequence

>Msa0388950

MTDYAQEQEMEIEALEAILMDEFKEIHSGESGLSTSNRCFQIKITAQEEDGDESNTNPAQQLALIFAHTEKYPDEPPLLNVSSLQGISSEDLRILKDKLQQEASENLGMAMIYTLVSSAKEWLTERYCEDSDGDAEAEEAAKEDIVVPHGEAVTVETFLAWRERFEAELALERAKLMPESVLATSKEKKLTGRQWFESGRMKGAAVVTEDLDEEDEEDIDFDDDEDFEDDEDDMLEHYLAEKSDSSTHSSMRAS*