AlfalfaGEDB | Msa0388950

M. sativa cultivar zhongmu-4 / Msa0388950

KEGG: -
GO: GO:0002181 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007568 GO:0007569 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010469 GO:0010556 GO:0010646 GO:0010647 GO:0014070 GO:0019219 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032991 GO:0033143 GO:0033145 GO:0033554 GO:0033574 GO:0033993 GO:0034599 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043401 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060765 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071383 GO:0071394 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0080090 GO:1901564 GO:1901566 GO:1901576 GO:1901654 GO:1901655 GO:1901700 GO:1901701 GO:1903506 GO:1990904 GO:2000112 GO:2000273 GO:2000823 GO:2000825 GO:2001141
PFAM: PF05773.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0388950	XP_013444254.1	99.213	254	2	0	1	254	1	254	0.0	510

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0388950	sp\|Q9CQK7\|RWDD1_MOUSE	34.766	256	143	6	1	246	1	242	1.36e-27	109

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0388950	A0A072TM40	99.213	254	2	0	1	254	1	254	0.0	510

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0388950	0.817553	3.106748e-52	-8.615850e-47
Msa0006110	Msa0388950	0.831586	1.534969e-55	-8.615850e-47
Msa0006380	Msa0388950	0.815377	9.537215e-52	-8.615850e-47
Msa0006390	Msa0388950	0.803252	3.809116e-49	-8.615850e-47
Msa0007990	Msa0388950	0.800516	1.389200e-48	-8.615850e-47
Msa0011170	Msa0388950	0.840688	7.478161e-58	-8.615850e-47
Msa0014710	Msa0388950	0.804577	2.020820e-49	-8.615850e-47
Msa0015390	Msa0388950	0.855438	6.307864e-62	-8.615850e-47
Msa0017510	Msa0388950	0.838107	3.499207e-57	-8.615850e-47
Msa0020410	Msa0388950	0.828040	1.121403e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0388950	MtrunA17_Chr8g0341531	99.213	254	2	0	1	254	1	254	0.0	510

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0388950	AT1G51730.1	70.445	247	71	2	1	246	1	246	8.09e-106	306

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Find 66 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTGGGAATACCTGTCA+TGG	0.615517	3_1:-93496308	None:intergenic
AACTCCCTCAAAAGACAACA+AGG	0.666325	3_1:-93502773	None:intergenic
AAGTGTAAAGATTGAAGTGA+AGG	0.625529	3_1:-93496245	None:intergenic
ACAGTAACTGCTTCTCCATG+AGG	0.657064	3_1:-93499711	None:intergenic
ACCTGTCATGGTGAGTTAGT+TGG	0.434602	3_1:-93496296	None:intergenic
ACTATACAAAACAGTTTGCA+AGG	0.496821	3_1:+93498293	Msa0388950:intron
ACTCTTTAGCTGAGCTAACA+AGG	0.518163	3_1:-93498709	None:intergenic
AGAAACTCACTGGCAGACAG+TGG	0.676924	3_1:+93500235	Msa0388950:CDS
AGAAATGGAGATTGAAGCAT+TGG	0.464035	3_1:+93496436	Msa0388950:CDS
AGATTGAAGTGAAGGTGTAA+AGG	0.564919	3_1:-93496237	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTGTAAAGATTGAAGTGA+AGG	-	chr3_1:93496248-93496267	None:intergenic	30.0%
GAGAGTTGAAGATTGAAATT+TGG	-	chr3_1:93496326-93496345	None:intergenic	30.0%
GAAATGACATTGAAAAGACA+TGG	+	chr3_1:93496840-93496859	Msa0388950:intron	30.0%
ATTGAAAAGACATGGTTACT+TGG	+	chr3_1:93496848-93496867	Msa0388950:intron	30.0%
ATGTTTATGGAGAAGTTGAA+CGG	+	chr3_1:93497387-93497406	Msa0388950:intron	30.0%
TTAAGACTATCCATGACATA+AGG	-	chr3_1:93497498-93497517	None:intergenic	30.0%
TCAAACACAGATTGATTACA+TGG	-	chr3_1:93497546-93497565	None:intergenic	30.0%
TGTTTGTGGATATAGAAGTT+CGG	+	chr3_1:93497774-93497793	Msa0388950:intron	30.0%
TCCTCACAATCACATAAATT+TGG	+	chr3_1:93497864-93497883	Msa0388950:intron	30.0%
TCCAAATTTATGTGATTGTG+AGG	-	chr3_1:93497868-93497887	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	93496164	93503037	93496164	ID=Msa0388950;Name=Msa0388950
chr3_1	mRNA	93496164	93503037	93496164	ID=Msa0388950-mRNA-1;Parent=Msa0388950;Name=Msa0388950-mRNA-1;_AED=0.13;_eAED=0.13;_QI=146\|1\|1\|1\|1\|1\|11\|305\|254
chr3_1	exon	93496164	93496316	93496164	ID=Msa0388950-mRNA-1:exon:26467;Parent=Msa0388950-mRNA-1
chr3_1	exon	93496420	93496485	93496420	ID=Msa0388950-mRNA-1:exon:26468;Parent=Msa0388950-mRNA-1
chr3_1	exon	93496586	93496653	93496586	ID=Msa0388950-mRNA-1:exon:26469;Parent=Msa0388950-mRNA-1
chr3_1	exon	93497930	93497963	93497930	ID=Msa0388950-mRNA-1:exon:26470;Parent=Msa0388950-mRNA-1
chr3_1	exon	93498108	93498180	93498108	ID=Msa0388950-mRNA-1:exon:26471;Parent=Msa0388950-mRNA-1
chr3_1	exon	93498307	93498364	93498307	ID=Msa0388950-mRNA-1:exon:26472;Parent=Msa0388950-mRNA-1
chr3_1	exon	93498674	93498799	93498674	ID=Msa0388950-mRNA-1:exon:26473;Parent=Msa0388950-mRNA-1
chr3_1	exon	93499702	93499793	93499702	ID=Msa0388950-mRNA-1:exon:26474;Parent=Msa0388950-mRNA-1
chr3_1	exon	93500197	93500275	93500197	ID=Msa0388950-mRNA-1:exon:26475;Parent=Msa0388950-mRNA-1
chr3_1	exon	93502477	93502558	93502477	ID=Msa0388950-mRNA-1:exon:26476;Parent=Msa0388950-mRNA-1
chr3_1	exon	93502653	93503037	93502653	ID=Msa0388950-mRNA-1:exon:26477;Parent=Msa0388950-mRNA-1
chr3_1	five_prime_UTR	93496164	93496309	93496164	ID=Msa0388950-mRNA-1:five_prime_utr;Parent=Msa0388950-mRNA-1
chr3_1	CDS	93496310	93496316	93496310	ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1	CDS	93496420	93496485	93496420	ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1	CDS	93496586	93496653	93496586	ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1	CDS	93497930	93497963	93497930	ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1	CDS	93498108	93498180	93498108	ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1	CDS	93498307	93498364	93498307	ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1	CDS	93498674	93498799	93498674	ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1	CDS	93499702	93499793	93499702	ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1	CDS	93500197	93500275	93500197	ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1	CDS	93502477	93502558	93502477	ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1	CDS	93502653	93502732	93502653	ID=Msa0388950-mRNA-1:cds;Parent=Msa0388950-mRNA-1
chr3_1	three_prime_UTR	93502733	93503037	93502733	ID=Msa0388950-mRNA-1:three_prime_utr;Parent=Msa0388950-mRNA-1

Gene Sequence

>Msa0388950

ATGACAGACTACGCGCAAGAACAAGAAATGGAGATTGAAGCATTGGAAGCTATACTTATGGATGAATTCAAAGAAATACATTCTGGTGAAAGTGGTTTAAGCACTTCCAATAGGTGCTTCCAGATTAAAATCACTGCTCAGGAGGAAGATGGAGACGAGTCAAATACTAATCCAGCTCAACAACTGGCTTTGATCTTCGCGCACACAGAAAAATATCCAGACGAACCTCCGCTTTTGAATGTGAGCAGTTTGCAAGGAATATCGTCTGAAGATTTAAGGATTTTGAAAGACAAACTTCAACAAGAGGCATCTGAAAATCTTGGCATGGCTATGATTTACACCCTTGTTAGCTCAGCTAAAGAGTGGTTGACTGAGCGGTATTGTGAAGACTCAGATGGTGATGCTGAAGCAGAAGAGGCGGCCAAAGAAGATATAGTGGTACCTCATGGAGAAGCAGTTACTGTCGAAACATTTTTGGCATGGAGGGAAAGGTTTGAAGCTGAACTAGCACTTGAACGAGCCAAGCTAATGCCAGAGTCTGTGCTTGCTACTTCGAAGGAAAAGAAACTCACTGGCAGACAGTGGTTTGAAAGTGGAAGGATGAAAGGTGCAGCTGTTGTCACGGAAGATTTGGATGAGGAGGATGAGGAAGACATTGACTTTGATGATGATGAGGATTTCGAAGATGATGAAGATGATATGCTTGAGCATTATCTAGCTGAAAAATCTGATTCATCCACACATTCTTCCATGCGAGCAAGTTAA

Protein sequence

>Msa0388950

MTDYAQEQEMEIEALEAILMDEFKEIHSGESGLSTSNRCFQIKITAQEEDGDESNTNPAQQLALIFAHTEKYPDEPPLLNVSSLQGISSEDLRILKDKLQQEASENLGMAMIYTLVSSAKEWLTERYCEDSDGDAEAEEAAKEDIVVPHGEAVTVETFLAWRERFEAELALERAKLMPESVLATSKEKKLTGRQWFESGRMKGAAVVTEDLDEEDEEDIDFDDDEDFEDDEDDMLEHYLAEKSDSSTHSSMRAS*