AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0079180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079180 MtrunA17_Chr1g0190101 99.595 247 1 0 1 247 1 247 0.0 508
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079180 AT4G12590.1 83.333 246 40 1 1 246 1 245 4.30e-154 428

Find 78 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCATGATGCTCGAAATT+TGG 0.208439 1_2:-56982164 None:intergenic
TTCTCCAACCTTCTTTCTTA+TGG 0.217168 1_2:-56982434 None:intergenic
TCTGTTGTTATGGTTCTTAT+TGG 0.240582 1_2:+56978126 Msa0079180:CDS
TTTAGGTCCATGTTACAAAA+TGG 0.280773 1_2:+56981216 Msa0079180:CDS
AATCCCTTTATCTGTTGTTA+TGG 0.295399 1_2:+56978116 Msa0079180:CDS
CTCAATCTGTTTGGCTTAAG+AGG 0.312313 1_2:+56981366 Msa0079180:CDS
TTCTTAAATAACATCAGTTC+TGG 0.312638 1_2:-56982402 None:intergenic
TTCCATTGACTCAAAGGTTT+AGG 0.321368 1_2:+56981199 Msa0079180:CDS
AGAACCATAACAACAGATAA+AGG 0.348446 1_2:-56978120 None:intergenic
ACCTTCTTTCTTATGGCTAC+TGG 0.354373 1_2:-56982427 None:intergenic
ATCGGAAGTTTAATTGCTTA+GGG 0.367333 1_2:+56982231 Msa0079180:three_prime_UTR
GTGCTTGTGGATTCGTGGCT+TGG 0.374021 1_2:-56978718 None:intergenic
ATTCATATTTGTACCTTTGA+AGG 0.376759 1_2:-56981615 None:intergenic
TAGAATAATGGCGGAAGATC+TGG 0.378579 1_2:+56978062 Msa0079180:exon
TGGATACTGCAATCAGAGAT+TGG 0.384123 1_2:+56978088 Msa0079180:CDS
CGGGCACGAAAAGCCTTAGA+AGG 0.386182 1_2:-56978369 None:intergenic
CATCGGAAGTTTAATTGCTT+AGG 0.387632 1_2:+56982230 Msa0079180:three_prime_UTR
GGATTCGTGGCTTGGCCCTT+TGG 0.388165 1_2:-56978710 None:intergenic
CTATCGAAAGACGAGGTTGC+CGG 0.390954 1_2:+56977825 Msa0079180:five_prime_UTR
AATGGCGGAAGATCTGGTTT+TGG 0.395876 1_2:+56978068 Msa0079180:exon
AGGATTGTTTAGTCTCATCT+TGG 0.396848 1_2:+56981386 Msa0079180:CDS
AGGTACTTTCTCAATCTGTT+TGG 0.404129 1_2:+56981357 Msa0079180:intron
GGATTGTTTAGTCTCATCTT+GGG 0.407530 1_2:+56981387 Msa0079180:CDS
GGTTGGACCTTTGCCATCCT+TGG 0.413923 1_2:+56982278 Msa0079180:three_prime_UTR
GACCTAAACCTTTGAGTCAA+TGG 0.428275 1_2:-56981201 None:intergenic
TTGACATAACCCAACATGAC+TGG 0.428580 1_2:+56982135 Msa0079180:CDS
ATGCAAATGGGTGGTGGATT+CGG 0.429326 1_2:+56981585 Msa0079180:CDS
GGATACTGCAATCAGAGATT+GGG 0.433624 1_2:+56978089 Msa0079180:CDS
AGTCAATGGAAAAGGTATCT+TGG 0.442786 1_2:-56981187 None:intergenic
GAACCATAACAACAGATAAA+GGG 0.446360 1_2:-56978119 None:intergenic
ATCATATCCATGGCCATGTT+CGG 0.446386 1_2:-56978755 None:intergenic
TGGCAAGGCCCAGTCATGTT+GGG 0.461277 1_2:-56982144 None:intergenic
ATTACAATAATAAAGCTTGC+GGG 0.463442 1_2:-56978388 None:intergenic
TTAAACTTCCGATGTCATAT+AGG 0.465874 1_2:-56982221 None:intergenic
TGGTCTGTTGTTCGTTCCAA+AGG 0.466535 1_2:+56978694 Msa0079180:CDS
TTACATTCTATTGTTGCGGT+TGG 0.473394 1_2:+56982261 Msa0079180:three_prime_UTR
AACCTTTGAGTCAATGGAAA+AGG 0.476417 1_2:-56981195 None:intergenic
CATCTGTGCTTGTGGATTCG+TGG 0.483223 1_2:-56978723 None:intergenic
GCTATGTCAGCAGTCGCTCC+TGG 0.485535 1_2:+56981265 Msa0079180:CDS
TTGGGAAGAACGCAGAAGCT+TGG 0.489162 1_2:-56978169 None:intergenic
CAAGCTTTATTATTGTAATG+AGG 0.490585 1_2:+56978392 Msa0079180:CDS
TACACAGCTCAATATTTCAT+AGG 0.493600 1_2:-56982461 None:intergenic
AGGAGGGAGATGTGCAGAGT+AGG 0.495302 1_2:-56982546 None:intergenic
TACACAAAGAATGATGCAAA+TGG 0.499016 1_2:+56981572 Msa0079180:CDS
AGAGGAACAAGATCGAGAAC+TGG 0.508615 1_2:-56977868 None:intergenic
GGAGGGAGATGTGCAGAGTA+GGG 0.521384 1_2:-56982545 None:intergenic
GCCAGTAGCCATAAGAAAGA+AGG 0.529286 1_2:+56982426 Msa0079180:three_prime_UTR
ACACTTACATTCTATTGTTG+CGG 0.533115 1_2:+56982257 Msa0079180:three_prime_UTR
TGACATAACCCAACATGACT+GGG 0.533631 1_2:+56982136 Msa0079180:CDS
GGTCTGTTGTTCGTTCCAAA+GGG 0.539924 1_2:+56978695 Msa0079180:CDS
ATGTGCAGAGTAGGGCTTCG+CGG 0.546360 1_2:-56982537 None:intergenic
TCTTTCAATGATCATACCTC+AGG 0.547565 1_2:+56978787 Msa0079180:CDS
CTCTGATCCGAACATGGCCA+TGG 0.554603 1_2:+56978748 Msa0079180:CDS
TTGGCAAGGCCCAGTCATGT+TGG 0.556486 1_2:-56982145 None:intergenic
ATTCGGATTTGATCCTTCAA+AGG 0.558196 1_2:+56981602 Msa0079180:CDS
TCAGAGAACATCTGTGCTTG+TGG 0.560054 1_2:-56978731 None:intergenic
GATATCAAAATTGTCAGAGA+AGG 0.562692 1_2:+56978198 Msa0079180:CDS
GATTGTTTAGTCTCATCTTG+GGG 0.571481 1_2:+56981388 Msa0079180:CDS
AGCTCGGAATTTACGTGCTG+CGG 0.574470 1_2:+56978335 Msa0079180:CDS
ACACAAAGAATGATGCAAAT+GGG 0.575278 1_2:+56981573 Msa0079180:CDS
CATTACAATAATAAAGCTTG+CGG 0.576893 1_2:-56978389 None:intergenic
AGAATGATGCAAATGGGTGG+TGG 0.577037 1_2:+56981579 Msa0079180:CDS
GGCAAGTTATGCTTAGAGCT+CGG 0.581999 1_2:+56978319 Msa0079180:intron
ATATCAAAATTGTCAGAGAA+GGG 0.586701 1_2:+56978199 Msa0079180:CDS
GTAGCCATAAGAAAGAAGGT+TGG 0.598364 1_2:+56982430 Msa0079180:three_prime_UTR
GCGCGATGCGTCACAAACAG+AGG 0.610687 1_2:-56977886 None:intergenic
GATGTTCTCTGATCCGAACA+TGG 0.617346 1_2:+56978742 Msa0079180:CDS
GATCGATTGTGTGACACAGC+CGG 0.617555 1_2:-56977844 None:intergenic
TCGGAAGTTTAATTGCTTAG+GGG 0.624960 1_2:+56982232 Msa0079180:three_prime_UTR
ATGATGCTCGAAATTTGGCA+AGG 0.632426 1_2:-56982159 None:intergenic
CCACGATGTAGTAACTGATG+AGG 0.636910 1_2:-56977913 None:intergenic
ATTGTTTAGTCTCATCTTGG+GGG 0.651233 1_2:+56981389 Msa0079180:CDS
GAACAATACCTATATGACAT+CGG 0.653084 1_2:+56982213 Msa0079180:exon
AGCTAACATCAACTGTGCTG+AGG 0.659434 1_2:-56981245 None:intergenic
GGGCACGAAAAGCCTTAGAA+GGG 0.660230 1_2:-56978368 None:intergenic
TGTTAAACTATCGAAAGACG+AGG 0.674238 1_2:+56977818 Msa0079180:five_prime_UTR
CCTCATCAGTTACTACATCG+TGG 0.720363 1_2:+56977913 Msa0079180:five_prime_UTR
CAAAGAATGATGCAAATGGG+TGG 0.748607 1_2:+56981576 Msa0079180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATTTGATGTTATA+TGG + chr1_2:56978274-56978293 Msa0079180:intron 10.0%
!! TTAAATTTATGTTTCTTATT+TGG + chr1_2:56978453-56978472 Msa0079180:intron 10.0%
!!! TAAATTTATGTTTCTTATTT+GGG + chr1_2:56978454-56978473 Msa0079180:intron 10.0%
!! TATATACAAAAAATTAAAAC+TGG - chr1_2:56979115-56979134 None:intergenic 10.0%
!!! TTATGTATGATTTTAGATTT+GGG - chr1_2:56977979-56977998 None:intergenic 15.0%
!!! ATTATGTATGATTTTAGATT+TGG - chr1_2:56977980-56977999 None:intergenic 15.0%
!!! ATTTTTATTATGATTTCTTC+TGG - chr1_2:56979806-56979825 None:intergenic 15.0%
!! GAAGAAATCATAATAAAAAT+AGG + chr1_2:56979806-56979825 Msa0079180:intron 15.0%
!! TAAGATTATAAACAAATTCT+AGG + chr1_2:56979859-56979878 Msa0079180:intron 15.0%
!!! TTTTTAACCTTTTCTTATAA+AGG - chr1_2:56981883-56981902 None:intergenic 15.0%
!!! AAGTTTTTCAGTAAAACAAA+AGG + chr1_2:56977751-56977770 Msa0079180:five_prime_UTR 20.0%
!! TGAAATTGAAATTAGAAACA+AGG - chr1_2:56977953-56977972 None:intergenic 20.0%
!!! TTTGTTAGGTTTTAGAATAA+TGG + chr1_2:56978050-56978069 Msa0079180:exon 20.0%
!! AATTAACAACTTATTGTTTG+AGG + chr1_2:56978508-56978527 Msa0079180:intron 20.0%
!!! TGTTTGTCAATTTTTGTTAA+AGG + chr1_2:56978667-56978686 Msa0079180:intron 20.0%
!!! CAATTTTTGTTAAAGGAAAA+TGG + chr1_2:56978674-56978693 Msa0079180:intron 20.0%
!!! ATTTTTTGTATATATACGGT+TGG + chr1_2:56979121-56979140 Msa0079180:intron 20.0%
!!! ATTCTTGGTTTTTTTTCTTT+TGG + chr1_2:56979406-56979425 Msa0079180:intron 20.0%
!!! ATTTTGTAGTTCTATATAGT+TGG - chr1_2:56979575-56979594 None:intergenic 20.0%
!!! ATAATCTTAAAGTATCTCTT+AGG - chr1_2:56979848-56979867 None:intergenic 20.0%
!!! AGATACTCTTTTCTTTTTTA+TGG + chr1_2:56979892-56979911 Msa0079180:intron 20.0%
!! TAAAACTATAATTTCCAAGT+TGG - chr1_2:56981674-56981693 None:intergenic 20.0%
!!! TCAAGTTTTTTTTTTAGCAA+AGG + chr1_2:56981789-56981808 Msa0079180:intron 20.0%
!!! ATATTTTTCCGTAGTTTGTT+AGG + chr1_2:56978036-56978055 Msa0079180:intron 25.0%
!!! TTCTAAAACCTAACAAACTA+CGG - chr1_2:56978047-56978066 None:intergenic 25.0%
! ATATCAAAATTGTCAGAGAA+GGG + chr1_2:56978199-56978218 Msa0079180:CDS 25.0%
! TTGATGTTATATGGATGATT+TGG + chr1_2:56978283-56978302 Msa0079180:intron 25.0%
! ATTACAATAATAAAGCTTGC+GGG - chr1_2:56978391-56978410 None:intergenic 25.0%
! CATTACAATAATAAAGCTTG+CGG - chr1_2:56978392-56978411 None:intergenic 25.0%
!!! CAAGCTTTATTATTGTAATG+AGG + chr1_2:56978392-56978411 Msa0079180:CDS 25.0%
!!! AGAAAACCTTTAAAACTCAT+CGG + chr1_2:56978559-56978578 Msa0079180:intron 25.0%
!! ATTTTTCTTCATCATATCCA+TGG - chr1_2:56978768-56978787 None:intergenic 25.0%
!! AAAAAGTATAATAACAGGCA+AGG - chr1_2:56978869-56978888 None:intergenic 25.0%
!! TTGGCAAAAAGTATAATAAC+AGG - chr1_2:56978874-56978893 None:intergenic 25.0%
! TTAGTATGGCAATTCATAAT+TGG - chr1_2:56978893-56978912 None:intergenic 25.0%
! GTAAACAATACAAGTTAGTA+TGG - chr1_2:56978907-56978926 None:intergenic 25.0%
! TTGTATTGTTTACTCTTGTT+GGG + chr1_2:56978914-56978933 Msa0079180:intron 25.0%
! GTAGTGTCATAATATTAGAT+TGG + chr1_2:56979017-56979036 Msa0079180:intron 25.0%
! ATATCTTGACTTATTGTCTA+TGG + chr1_2:56979164-56979183 Msa0079180:intron 25.0%
! ATATCAACTAATCAAACAGA+CGG + chr1_2:56979220-56979239 Msa0079180:intron 25.0%
!!! GTTTTTTTTCTTTTGGTTCA+AGG + chr1_2:56979413-56979432 Msa0079180:intron 25.0%
! AGAATGGGAGATAAAATAAA+AGG + chr1_2:56979507-56979526 Msa0079180:intron 25.0%
! GAATGGGAGATAAAATAAAA+GGG + chr1_2:56979508-56979527 Msa0079180:intron 25.0%
! AATGGGAGATAAAATAAAAG+GGG + chr1_2:56979509-56979528 Msa0079180:intron 25.0%
!! TCTGATTTTTCCTATGAATT+GGG - chr1_2:56979623-56979642 None:intergenic 25.0%
! GAAAAATCAGAGAATACATT+AGG + chr1_2:56979632-56979651 Msa0079180:intron 25.0%
!! TTGTGGGATTTTAGATAAAA+GGG + chr1_2:56979661-56979680 Msa0079180:intron 25.0%
! AATTGAGACTTATAGTACTT+AGG - chr1_2:56979986-56980005 None:intergenic 25.0%
!!! ATAAGTCTCAATTTTTCAGA+TGG + chr1_2:56979993-56980012 Msa0079180:intron 25.0%
! AAAGAGGAAAAATCTACTAT+GGG - chr1_2:56980074-56980093 None:intergenic 25.0%
! ATGTATAACTTTACCAAACT+TGG + chr1_2:56980550-56980569 Msa0079180:intron 25.0%
! AAATTCTATTACTGAGTAAC+AGG + chr1_2:56980921-56980940 Msa0079180:intron 25.0%
!!! AAGTTTTAGTTCAATAACTG+CGG - chr1_2:56980949-56980968 None:intergenic 25.0%
!!! GTTGATTTTTCCATTATAAC+TGG + chr1_2:56981487-56981506 Msa0079180:intron 25.0%
! TTTCCATTATAACTGGAATT+TGG + chr1_2:56981494-56981513 Msa0079180:intron 25.0%
! TATCCAAATTCCAGTTATAA+TGG - chr1_2:56981500-56981519 None:intergenic 25.0%
! ATTCATATTTGTACCTTTGA+AGG - chr1_2:56981618-56981637 None:intergenic 25.0%
!! TTCAAAGGTACAAATATGAA+TGG + chr1_2:56981617-56981636 Msa0079180:intron 25.0%
!!! ATAATTTTGAAGATCCAACT+TGG + chr1_2:56981657-56981676 Msa0079180:intron 25.0%
!! TTAACCTTTTCTTATAAAGG+TGG - chr1_2:56981880-56981899 None:intergenic 25.0%
! GGTTAAAAAAGAATAGTTCT+TGG + chr1_2:56981894-56981913 Msa0079180:intron 25.0%
!!! ACCTTTTTAATCTTGTTTTC+AGG + chr1_2:56982088-56982107 Msa0079180:intron 25.0%
!!! CCTTTTTAATCTTGTTTTCA+GGG + chr1_2:56982089-56982108 Msa0079180:intron 25.0%
! TTCTTAAATAACATCAGTTC+TGG - chr1_2:56982405-56982424 None:intergenic 25.0%
!!! GTTAGGTTTTAGAATAATGG+CGG + chr1_2:56978053-56978072 Msa0079180:exon 30.0%
AATCCCTTTATCTGTTGTTA+TGG + chr1_2:56978116-56978135 Msa0079180:CDS 30.0%
GAACCATAACAACAGATAAA+GGG - chr1_2:56978122-56978141 None:intergenic 30.0%
AGAACCATAACAACAGATAA+AGG - chr1_2:56978123-56978142 None:intergenic 30.0%
TCTGTTGTTATGGTTCTTAT+TGG + chr1_2:56978126-56978145 Msa0079180:CDS 30.0%
!! AATTTTGATATCAGGGGTTT+GGG - chr1_2:56978190-56978209 None:intergenic 30.0%
!! TCTGACAATTTTGATATCAG+GGG - chr1_2:56978196-56978215 None:intergenic 30.0%
!! CTCTGACAATTTTGATATCA+GGG - chr1_2:56978197-56978216 None:intergenic 30.0%
!! TCTCTGACAATTTTGATATC+AGG - chr1_2:56978198-56978217 None:intergenic 30.0%
GATATCAAAATTGTCAGAGA+AGG + chr1_2:56978198-56978217 Msa0079180:CDS 30.0%
!! TGATTTGGTGATCTTAATAC+AGG + chr1_2:56978298-56978317 Msa0079180:intron 30.0%
!! GTGTATTCTAGTTTGATAGA+AGG + chr1_2:56978429-56978448 Msa0079180:intron 30.0%
TATTTGGGAGAACAATGTAA+TGG + chr1_2:56978469-56978488 Msa0079180:intron 30.0%
!! AATGTAATGGCTTTTGTTGT+GGG + chr1_2:56978482-56978501 Msa0079180:intron 30.0%
!! TAACTTCCGATGAGTTTTAA+AGG - chr1_2:56978568-56978587 None:intergenic 30.0%
CATTTGTCTAACCAATTCAA+CGG + chr1_2:56978635-56978654 Msa0079180:intron 30.0%
!! GTTACTGTGTCATTAGATTT+TGG + chr1_2:56978835-56978854 Msa0079180:intron 30.0%
CTTGTATTGTTTACTCTTGT+TGG + chr1_2:56978913-56978932 Msa0079180:intron 30.0%
CTAATATTATGACACTACGA+GGG - chr1_2:56979015-56979034 None:intergenic 30.0%
TCTAATATTATGACACTACG+AGG - chr1_2:56979016-56979035 None:intergenic 30.0%
AGATATATACGTGCTTATTC+AGG - chr1_2:56979150-56979169 None:intergenic 30.0%
! ATCAAACAGACGGTTTTTAT+TGG + chr1_2:56979230-56979249 Msa0079180:intron 30.0%
ACATATGATAGATTACCTAG+TGG + chr1_2:56979263-56979282 Msa0079180:intron 30.0%
CATATGATAGATTACCTAGT+GGG + chr1_2:56979264-56979283 Msa0079180:intron 30.0%
CTATCAAAGAAATGTACCAA+GGG + chr1_2:56979301-56979320 Msa0079180:intron 30.0%
TATCAAAGAAATGTACCAAG+GGG + chr1_2:56979302-56979321 Msa0079180:intron 30.0%
! TGTGTCAAGATAACATCTTT+TGG - chr1_2:56979453-56979472 None:intergenic 30.0%
AGATGATAGACAGTCATAAA+TGG + chr1_2:56979483-56979502 Msa0079180:intron 30.0%
GATGATAGACAGTCATAAAT+GGG + chr1_2:56979484-56979503 Msa0079180:intron 30.0%
! CTCTGATTTTTCCTATGAAT+TGG - chr1_2:56979624-56979643 None:intergenic 30.0%
!! AATACATTAGGTTGAAGTTG+TGG + chr1_2:56979644-56979663 Msa0079180:intron 30.0%
!! ATACATTAGGTTGAAGTTGT+GGG + chr1_2:56979645-56979664 Msa0079180:intron 30.0%
! GTTGTGGGATTTTAGATAAA+AGG + chr1_2:56979660-56979679 Msa0079180:intron 30.0%
! TGTGGGATTTTAGATAAAAG+GGG + chr1_2:56979662-56979681 Msa0079180:intron 30.0%
AAACACTAATCCCTGTTTAT+AGG + chr1_2:56979757-56979776 Msa0079180:intron 30.0%
AACACTAATCCCTGTTTATA+GGG + chr1_2:56979758-56979777 Msa0079180:intron 30.0%
! GACTTATAGTACTTAGGTTT+TGG - chr1_2:56979980-56979999 None:intergenic 30.0%
!! TTTTTCAGATGGATCATGTT+TGG + chr1_2:56980004-56980023 Msa0079180:intron 30.0%
AGTGAAACTTCAAAATCCAA+CGG - chr1_2:56980033-56980052 None:intergenic 30.0%
GAAAGAGGAAAAATCTACTA+TGG - chr1_2:56980075-56980094 None:intergenic 30.0%
ATTTCATGGTCGTAAAAATG+GGG - chr1_2:56980516-56980535 None:intergenic 30.0%
CATTTCATGGTCGTAAAAAT+GGG - chr1_2:56980517-56980536 None:intergenic 30.0%
AGTTATACATATGTATGCTC+TGG - chr1_2:56980540-56980559 None:intergenic 30.0%
! TGTTAAGTTTGTTCCAAGTT+TGG - chr1_2:56980566-56980585 None:intergenic 30.0%
ACAAACTTAACACTTTGTTG+TGG + chr1_2:56980574-56980593 Msa0079180:intron 30.0%
GATTGAATAGGATTCAATCA+TGG - chr1_2:56980743-56980762 None:intergenic 30.0%
TTTAGGTCCATGTTACAAAA+TGG + chr1_2:56981216-56981235 Msa0079180:CDS 30.0%
! GTCTATTCCATTTTGTAACA+TGG - chr1_2:56981226-56981245 None:intergenic 30.0%
CTATGAAAAAGAAGATTACC+AGG - chr1_2:56981286-56981305 None:intergenic 30.0%
AATTGTCATGATTGCATTTC+AGG + chr1_2:56981337-56981356 Msa0079180:intron 30.0%
! CACTTGTTACAAATTACGAT+TGG + chr1_2:56981522-56981541 Msa0079180:intron 30.0%
TACACAAAGAATGATGCAAA+TGG + chr1_2:56981572-56981591 Msa0079180:CDS 30.0%
ACACAAAGAATGATGCAAAT+GGG + chr1_2:56981573-56981592 Msa0079180:CDS 30.0%
TACAAAGAGAAGCAAAATGT+AGG + chr1_2:56981845-56981864 Msa0079180:intron 30.0%
! TATTTGAAACTGCAAAGCTA+AGG - chr1_2:56981998-56982017 None:intergenic 30.0%
CCCTGAAAACAAGATTAAAA+AGG - chr1_2:56982092-56982111 None:intergenic 30.0%
GAACAATACCTATATGACAT+CGG + chr1_2:56982213-56982232 Msa0079180:exon 30.0%
TTAAACTTCCGATGTCATAT+AGG - chr1_2:56982224-56982243 None:intergenic 30.0%
ATCGGAAGTTTAATTGCTTA+GGG + chr1_2:56982231-56982250 Msa0079180:three_prime_UTR 30.0%
ACACTTACATTCTATTGTTG+CGG + chr1_2:56982257-56982276 Msa0079180:three_prime_UTR 30.0%
! ATCTTCAATATCTTTTGCCA+AGG - chr1_2:56982298-56982317 None:intergenic 30.0%
TACACAGCTCAATATTTCAT+AGG - chr1_2:56982464-56982483 None:intergenic 30.0%
TGTTAAACTATCGAAAGACG+AGG + chr1_2:56977818-56977837 Msa0079180:five_prime_UTR 35.0%
!! CAATTTTGATATCAGGGGTT+TGG - chr1_2:56978191-56978210 None:intergenic 35.0%
! GGCTAATTTTATCCCTTCTA+AGG + chr1_2:56978356-56978375 Msa0079180:CDS 35.0%
! CAATGTAATGGCTTTTGTTG+TGG + chr1_2:56978481-56978500 Msa0079180:intron 35.0%
CAATTAGTTCACCGTTGAAT+TGG - chr1_2:56978649-56978668 None:intergenic 35.0%
TCTTTCAATGATCATACCTC+AGG + chr1_2:56978787-56978806 Msa0079180:CDS 35.0%
TAATCTATTCTCAACACCTG+AGG - chr1_2:56978806-56978825 None:intergenic 35.0%
!! TGGGTGAACTTTTTCTTTTC+TGG + chr1_2:56978955-56978974 Msa0079180:CDS 35.0%
! TTCTTTTCTGGATTTGTAGC+AGG + chr1_2:56978967-56978986 Msa0079180:CDS 35.0%
TGTTTATGCCTGTCATGTTA+CGG + chr1_2:56979079-56979098 Msa0079180:intron 35.0%
GCTATCAAAGAAATGTACCA+AGG + chr1_2:56979300-56979319 Msa0079180:intron 35.0%
! ACAACTAGTTTGAGCATACA+AGG + chr1_2:56979327-56979346 Msa0079180:intron 35.0%
ACAGTCATAAATGGGAGAAT+GGG + chr1_2:56979492-56979511 Msa0079180:intron 35.0%
CATTCACAATCCCAATTCAT+AGG + chr1_2:56979610-56979629 Msa0079180:intron 35.0%
! GTGGGATTTTAGATAAAAGG+GGG + chr1_2:56979663-56979682 Msa0079180:intron 35.0%
! AGGGATTAGTGTTTAGTCTT+CGG - chr1_2:56979751-56979770 None:intergenic 35.0%
TCTGTGTATCCCTATAAACA+GGG - chr1_2:56979770-56979789 None:intergenic 35.0%
AACCTCTGTTTGACAACATT+GGG - chr1_2:56980099-56980118 None:intergenic 35.0%
TAACCTCTGTTTGACAACAT+TGG - chr1_2:56980100-56980119 None:intergenic 35.0%
! TACGAAGTTTTGCCAAATAG+AGG + chr1_2:56980189-56980208 Msa0079180:intron 35.0%
TGAATTTCGCTATGCTATAG+AGG - chr1_2:56980232-56980251 None:intergenic 35.0%
! TTGTGGATTGCAGAAAATAG+CGG - chr1_2:56980261-56980280 None:intergenic 35.0%
GAAAGCAATGTTGTCAATTG+TGG - chr1_2:56980278-56980297 None:intergenic 35.0%
GTATACATCATCTTCAACGA+AGG - chr1_2:56980452-56980471 None:intergenic 35.0%
TTTCATGGTCGTAAAAATGG+GGG - chr1_2:56980515-56980534 None:intergenic 35.0%
GCATTTCATGGTCGTAAAAA+TGG - chr1_2:56980518-56980537 None:intergenic 35.0%
CAAATCTCTTCATCGTATCA+GGG - chr1_2:56980765-56980784 None:intergenic 35.0%
TCAAATCTCTTCATCGTATC+AGG - chr1_2:56980766-56980785 None:intergenic 35.0%
TTTACATCAGTCTTCTCTAC+TGG + chr1_2:56980863-56980882 Msa0079180:intron 35.0%
ATTTGAGAAGCAGATAACAG+AGG - chr1_2:56981147-56981166 None:intergenic 35.0%
!! AGTCAATGGAAAAGGTATCT+TGG - chr1_2:56981190-56981209 None:intergenic 35.0%
!!! TACCTTTTCCATTGACTCAA+AGG + chr1_2:56981193-56981212 Msa0079180:CDS 35.0%
AACCTTTGAGTCAATGGAAA+AGG - chr1_2:56981198-56981217 None:intergenic 35.0%
!! TTCCATTGACTCAAAGGTTT+AGG + chr1_2:56981199-56981218 Msa0079180:CDS 35.0%
AACACAAGTAAGAGTGAAAC+AGG - chr1_2:56981316-56981335 None:intergenic 35.0%
AGGTACTTTCTCAATCTGTT+TGG + chr1_2:56981357-56981376 Msa0079180:intron 35.0%
AGGATTGTTTAGTCTCATCT+TGG + chr1_2:56981386-56981405 Msa0079180:CDS 35.0%
GGATTGTTTAGTCTCATCTT+GGG + chr1_2:56981387-56981406 Msa0079180:CDS 35.0%
GATTGTTTAGTCTCATCTTG+GGG + chr1_2:56981388-56981407 Msa0079180:CDS 35.0%
ATTGTTTAGTCTCATCTTGG+GGG + chr1_2:56981389-56981408 Msa0079180:CDS 35.0%
ATTCGGATTTGATCCTTCAA+AGG + chr1_2:56981602-56981621 Msa0079180:CDS 35.0%
TCTGCCACCTTTATAAGAAA+AGG + chr1_2:56981873-56981892 Msa0079180:intron 35.0%
AATTAGCCAATTTCTCAGCA+AGG - chr1_2:56981922-56981941 None:intergenic 35.0%
AGAAATTGGCTAATTGCCTT+GGG + chr1_2:56981927-56981946 Msa0079180:intron 35.0%
TGTTAGAAACTACAGTAGGT+AGG - chr1_2:56982050-56982069 None:intergenic 35.0%
! GCTTTGTTAGAAACTACAGT+AGG - chr1_2:56982054-56982073 None:intergenic 35.0%
CATCGGAAGTTTAATTGCTT+AGG + chr1_2:56982230-56982249 Msa0079180:three_prime_UTR 35.0%
TCGGAAGTTTAATTGCTTAG+GGG + chr1_2:56982232-56982251 Msa0079180:three_prime_UTR 35.0%
TTACATTCTATTGTTGCGGT+TGG + chr1_2:56982261-56982280 Msa0079180:three_prime_UTR 35.0%
! TCAATATCTTTTGCCAAGGA+TGG - chr1_2:56982294-56982313 None:intergenic 35.0%
TTCTCCAACCTTCTTTCTTA+TGG - chr1_2:56982437-56982456 None:intergenic 35.0%
! TAGAATAATGGCGGAAGATC+TGG + chr1_2:56978062-56978081 Msa0079180:exon 40.0%
TGGATACTGCAATCAGAGAT+TGG + chr1_2:56978088-56978107 Msa0079180:CDS 40.0%
GGATACTGCAATCAGAGATT+GGG + chr1_2:56978089-56978108 Msa0079180:CDS 40.0%
TAACTCTCTGACTCTATCAC+AGG + chr1_2:56978589-56978608 Msa0079180:intron 40.0%
ATCATATCCATGGCCATGTT+CGG - chr1_2:56978758-56978777 None:intergenic 40.0%
!! GCAGACTCTTACTTTTGCTT+GGG + chr1_2:56978936-56978955 Msa0079180:intron 40.0%
! TCTGCTTGCTACAAAGATTG+AGG + chr1_2:56979193-56979212 Msa0079180:intron 40.0%
! CTGCTTGCTACAAAGATTGA+GGG + chr1_2:56979194-56979213 Msa0079180:intron 40.0%
CTAAATGTGAGTAACCCACT+AGG - chr1_2:56979281-56979300 None:intergenic 40.0%
GGTACACACTTATAGCTGTT+GGG - chr1_2:56979372-56979391 None:intergenic 40.0%
TGGTACACACTTATAGCTGT+TGG - chr1_2:56979373-56979392 None:intergenic 40.0%
ACAGCTATAAGTGTGTACCA+AGG + chr1_2:56979373-56979392 Msa0079180:intron 40.0%
CAGCTATAAGTGTGTACCAA+GGG + chr1_2:56979374-56979393 Msa0079180:intron 40.0%
CAAGAATCAAAGTTGACCCT+TGG - chr1_2:56979393-56979412 None:intergenic 40.0%
CAAGGGTCAACTTTGATTCT+TGG + chr1_2:56979391-56979410 Msa0079180:intron 40.0%
GACTGTCTATCATCTGCAAA+AGG - chr1_2:56979478-56979497 None:intergenic 40.0%
GACAGTCATAAATGGGAGAA+TGG + chr1_2:56979491-56979510 Msa0079180:intron 40.0%
GTCTGTGTATCCCTATAAAC+AGG - chr1_2:56979771-56979790 None:intergenic 40.0%
GAGGAAAAATCTACTATGGG+AGG - chr1_2:56980071-56980090 None:intergenic 40.0%
TTGACAACATTGGGAGAAAG+AGG - chr1_2:56980090-56980109 None:intergenic 40.0%
TGAAGATGATGTATACCCCA+AGG + chr1_2:56980456-56980475 Msa0079180:intron 40.0%
TTCATGGTCGTAAAAATGGG+GGG - chr1_2:56980514-56980533 None:intergenic 40.0%
ATGTATGCTCTGGCATTTCA+TGG - chr1_2:56980530-56980549 None:intergenic 40.0%
! TTGTTGTTGGCTATTGCTGA+AGG + chr1_2:56980672-56980691 Msa0079180:intron 40.0%
TGAGATGAAGTAGCAGATTG+AGG + chr1_2:56980709-56980728 Msa0079180:intron 40.0%
CATCGTATCAGGGATTGAAT+AGG - chr1_2:56980755-56980774 None:intergenic 40.0%
TTTGCGAGAGAATGAGATCA+AGG + chr1_2:56980798-56980817 Msa0079180:intron 40.0%
TTGCGAGAGAATGAGATCAA+GGG + chr1_2:56980799-56980818 Msa0079180:intron 40.0%
TATAGTTGCCTTGCACGAAA+AGG + chr1_2:56981065-56981084 Msa0079180:intron 40.0%
! AACTAAAGCCTTTTCGTGCA+AGG - chr1_2:56981076-56981095 None:intergenic 40.0%
AACAGAGGCAAGGAATACAA+GGG - chr1_2:56981132-56981151 None:intergenic 40.0%
TAACAGAGGCAAGGAATACA+AGG - chr1_2:56981133-56981152 None:intergenic 40.0%
GACCTAAACCTTTGAGTCAA+TGG - chr1_2:56981204-56981223 None:intergenic 40.0%
! CTCAATCTGTTTGGCTTAAG+AGG + chr1_2:56981366-56981385 Msa0079180:CDS 40.0%
CAAAGAATGATGCAAATGGG+TGG + chr1_2:56981576-56981595 Msa0079180:CDS 40.0%
GGATATTTCCTCGTGAGATA+TGG - chr1_2:56981726-56981745 None:intergenic 40.0%
CTCACGAGGAAATATCCATA+TGG + chr1_2:56981729-56981748 Msa0079180:intron 40.0%
ACGAGGAAATATCCATATGG+AGG + chr1_2:56981732-56981751 Msa0079180:intron 40.0%
TAAGCTACAGAACCTCCATA+TGG - chr1_2:56981747-56981766 None:intergenic 40.0%
GTAGCTTAACTACTTCACTG+AGG + chr1_2:56981759-56981778 Msa0079180:intron 40.0%
GAGAAATTGGCTAATTGCCT+TGG + chr1_2:56981926-56981945 Msa0079180:intron 40.0%
TTGGGATGCTATACAAGCAA+GGG + chr1_2:56981945-56981964 Msa0079180:intron 40.0%
TAAATGTCGAACTGTGACGA+GGG + chr1_2:56982021-56982040 Msa0079180:intron 40.0%
TTGACATAACCCAACATGAC+TGG + chr1_2:56982135-56982154 Msa0079180:CDS 40.0%
TGACATAACCCAACATGACT+GGG + chr1_2:56982136-56982155 Msa0079180:CDS 40.0%
ATGATGCTCGAAATTTGGCA+AGG - chr1_2:56982162-56982181 None:intergenic 40.0%
TCAGCATGATGCTCGAAATT+TGG - chr1_2:56982167-56982186 None:intergenic 40.0%
ACCTTCTTTCTTATGGCTAC+TGG - chr1_2:56982430-56982449 None:intergenic 40.0%
GTAGCCATAAGAAAGAAGGT+TGG + chr1_2:56982430-56982449 Msa0079180:three_prime_UTR 40.0%
AGAGGAACAAGATCGAGAAC+TGG - chr1_2:56977871-56977890 None:intergenic 45.0%
CCACGATGTAGTAACTGATG+AGG - chr1_2:56977916-56977935 None:intergenic 45.0%
CCTCATCAGTTACTACATCG+TGG + chr1_2:56977913-56977932 Msa0079180:five_prime_UTR 45.0%
!! AATGGCGGAAGATCTGGTTT+TGG + chr1_2:56978068-56978087 Msa0079180:exon 45.0%
GGCAAGTTATGCTTAGAGCT+CGG + chr1_2:56978319-56978338 Msa0079180:intron 45.0%
TGGTCTGTTGTTCGTTCCAA+AGG + chr1_2:56978694-56978713 Msa0079180:CDS 45.0%
GGTCTGTTGTTCGTTCCAAA+GGG + chr1_2:56978695-56978714 Msa0079180:CDS 45.0%
TCAGAGAACATCTGTGCTTG+TGG - chr1_2:56978734-56978753 None:intergenic 45.0%
GATGTTCTCTGATCCGAACA+TGG + chr1_2:56978742-56978761 Msa0079180:CDS 45.0%
!! GGCAGACTCTTACTTTTGCT+TGG + chr1_2:56978935-56978954 Msa0079180:intron 45.0%
TTGCAACACCGTAACATGAC+AGG - chr1_2:56979090-56979109 None:intergenic 45.0%
TCAAACTAGTTGTGACCCCT+TGG - chr1_2:56979320-56979339 None:intergenic 45.0%
CTCCCAATGTTGTCAAACAG+AGG + chr1_2:56980094-56980113 Msa0079180:intron 45.0%
TATAGCAGTGCTATCTGCTC+TGG + chr1_2:56980118-56980137 Msa0079180:intron 45.0%
! GTGCTGCTATAGCCTCTATT+TGG - chr1_2:56980204-56980223 None:intergenic 45.0%
ACAAGAGACGCAAAGATTGC+TGG - chr1_2:56980364-56980383 None:intergenic 45.0%
TTAACTGCCAGAGCAACTGT+TGG - chr1_2:56980418-56980437 None:intergenic 45.0%
TGTTCCTCTACTGCCACAAA+AGG + chr1_2:56980609-56980628 Msa0079180:intron 45.0%
! CAATCCTTTTGTGGCAGTAG+AGG - chr1_2:56980616-56980635 None:intergenic 45.0%
CTCTACTGCCACAAAAGGAT+TGG + chr1_2:56980614-56980633 Msa0079180:intron 45.0%
! TATCGTGGCCAATCCTTTTG+TGG - chr1_2:56980625-56980644 None:intergenic 45.0%
CCTAATTCTGGTAGCTATCG+TGG - chr1_2:56980640-56980659 None:intergenic 45.0%
CCACGATAGCTACCAGAATT+AGG + chr1_2:56980637-56980656 Msa0079180:intron 45.0%
CCTCTGTTCTAGCCTAATTC+TGG - chr1_2:56980652-56980671 None:intergenic 45.0%
CCAGAATTAGGCTAGAACAG+AGG + chr1_2:56980649-56980668 Msa0079180:intron 45.0%
GCTAGAACAGAGGTTGTTGT+TGG + chr1_2:56980659-56980678 Msa0079180:intron 45.0%
AGAAGCAGATAACAGAGGCA+AGG - chr1_2:56981142-56981161 None:intergenic 45.0%
AGCTAACATCAACTGTGCTG+AGG - chr1_2:56981248-56981267 None:intergenic 45.0%
CTCATCTTGGGGGAAGAAAA+TGG + chr1_2:56981399-56981418 Msa0079180:CDS 45.0%
AGAATGATGCAAATGGGTGG+TGG + chr1_2:56981579-56981598 Msa0079180:CDS 45.0%
!! ATGCAAATGGGTGGTGGATT+CGG + chr1_2:56981585-56981604 Msa0079180:CDS 45.0%
TGAGATATGGAGAAAGGGAG+GGG - chr1_2:56981713-56981732 None:intergenic 45.0%
GTGAGATATGGAGAAAGGGA+GGG - chr1_2:56981714-56981733 None:intergenic 45.0%
CCTCGTGAGATATGGAGAAA+GGG - chr1_2:56981718-56981737 None:intergenic 45.0%
TCCTCGTGAGATATGGAGAA+AGG - chr1_2:56981719-56981738 None:intergenic 45.0%
TTGGCTCCTTGCTGAGAAAT+TGG + chr1_2:56981913-56981932 Msa0079180:intron 45.0%
CTTGCTTGTATAGCATCCCA+AGG - chr1_2:56981946-56981965 None:intergenic 45.0%
CTTGGGATGCTATACAAGCA+AGG + chr1_2:56981944-56981963 Msa0079180:intron 45.0%
TGGGATGCTATACAAGCAAG+GGG + chr1_2:56981946-56981965 Msa0079180:intron 45.0%
CTATACAAGCAAGGGGTTCA+GGG + chr1_2:56981953-56981972 Msa0079180:intron 45.0%
GTAAATGTCGAACTGTGACG+AGG + chr1_2:56982020-56982039 Msa0079180:intron 45.0%
AAATGTCGAACTGTGACGAG+GGG + chr1_2:56982022-56982041 Msa0079180:intron 45.0%
! TCTTTTGCCAAGGATGGCAA+AGG - chr1_2:56982288-56982307 None:intergenic 45.0%
GCCAGTAGCCATAAGAAAGA+AGG + chr1_2:56982426-56982445 Msa0079180:three_prime_UTR 45.0%
!!! TTTAATTTTTTGTATATATA+CGG + chr1_2:56979117-56979136 Msa0079180:intron 5.0%
CTATCGAAAGACGAGGTTGC+CGG + chr1_2:56977825-56977844 Msa0079180:five_prime_UTR 50.0%
GATCGATTGTGTGACACAGC+CGG - chr1_2:56977847-56977866 None:intergenic 50.0%
TTGGGAAGAACGCAGAAGCT+TGG - chr1_2:56978172-56978191 None:intergenic 50.0%
AGCTCGGAATTTACGTGCTG+CGG + chr1_2:56978335-56978354 Msa0079180:CDS 50.0%
GGGCACGAAAAGCCTTAGAA+GGG - chr1_2:56978371-56978390 None:intergenic 50.0%
CATCTGTGCTTGTGGATTCG+TGG - chr1_2:56978726-56978745 None:intergenic 50.0%
GGATCATGTTTGGTTGCCGT+TGG + chr1_2:56980014-56980033 Msa0079180:intron 50.0%
TGCTATCTGCTCTGGCATAG+CGG + chr1_2:56980126-56980145 Msa0079180:intron 50.0%
GAGACGCAAAGATTGCTGGA+AGG - chr1_2:56980360-56980379 None:intergenic 50.0%
TCTCTTGTGTGTGCAGACGT+TGG + chr1_2:56980376-56980395 Msa0079180:intron 50.0%
! AACTGTTGGTTAGGGTGGCT+GGG - chr1_2:56980404-56980423 None:intergenic 50.0%
! AGAGCAACTGTTGGTTAGGG+TGG - chr1_2:56980409-56980428 None:intergenic 50.0%
ACCCTAACCAACAGTTGCTC+TGG + chr1_2:56980408-56980427 Msa0079180:intron 50.0%
! GCCAGAGCAACTGTTGGTTA+GGG - chr1_2:56980412-56980431 None:intergenic 50.0%
! TGCCAGAGCAACTGTTGGTT+AGG - chr1_2:56980413-56980432 None:intergenic 50.0%
AGTTGCTCTGGCAGTTAACC+AGG + chr1_2:56980420-56980439 Msa0079180:intron 50.0%
CTTCAACGAAGGAGTCTTCC+TGG - chr1_2:56980441-56980460 None:intergenic 50.0%
! GTAAAAATGGGGGGCACAGA+GGG - chr1_2:56980505-56980524 None:intergenic 50.0%
! GTAGAGGAACAGAGTTGGTC+TGG - chr1_2:56980600-56980619 None:intergenic 50.0%
TGGCAGTAGAGGAACAGAGT+TGG - chr1_2:56980605-56980624 None:intergenic 50.0%
AGATATGGAGAAAGGGAGGG+GGG - chr1_2:56981711-56981730 None:intergenic 50.0%
GAGATATGGAGAAAGGGAGG+GGG - chr1_2:56981712-56981731 None:intergenic 50.0%
CGTGAGATATGGAGAAAGGG+AGG - chr1_2:56981715-56981734 None:intergenic 50.0%
CCCTTTCTCCATATCTCACG+AGG + chr1_2:56981715-56981734 Msa0079180:intron 50.0%
GCTATACAAGCAAGGGGTTC+AGG + chr1_2:56981952-56981971 Msa0079180:intron 50.0%
CGGGCACGAAAAGCCTTAGA+AGG - chr1_2:56978372-56978391 None:intergenic 55.0%
GTGCTTGTGGATTCGTGGCT+TGG - chr1_2:56978721-56978740 None:intergenic 55.0%
CTCTGATCCGAACATGGCCA+TGG + chr1_2:56978748-56978767 Msa0079180:CDS 55.0%
AGGAAGGGAAGAAGGAAGGG+GGG - chr1_2:56980302-56980321 None:intergenic 55.0%
GAGGAAGGGAAGAAGGAAGG+GGG - chr1_2:56980303-56980322 None:intergenic 55.0%
GGAGGAAGGGAAGAAGGAAG+GGG - chr1_2:56980304-56980323 None:intergenic 55.0%
CGGAGGAAGGGAAGAAGGAA+GGG - chr1_2:56980305-56980324 None:intergenic 55.0%
! CAACTGTTGGTTAGGGTGGC+TGG - chr1_2:56980405-56980424 None:intergenic 55.0%
! CGTAAAAATGGGGGGCACAG+AGG - chr1_2:56980506-56980525 None:intergenic 55.0%
ACAAGCAAGGGGTTCAGGGT+AGG + chr1_2:56981957-56981976 Msa0079180:intron 55.0%
TGGCAAGGCCCAGTCATGTT+GGG - chr1_2:56982147-56982166 None:intergenic 55.0%
TTGGCAAGGCCCAGTCATGT+TGG - chr1_2:56982148-56982167 None:intergenic 55.0%
GGTTGGACCTTTGCCATCCT+TGG + chr1_2:56982278-56982297 Msa0079180:three_prime_UTR 55.0%
ATGTGCAGAGTAGGGCTTCG+CGG - chr1_2:56982540-56982559 None:intergenic 55.0%
GCGCGATGCGTCACAAACAG+AGG - chr1_2:56977889-56977908 None:intergenic 60.0%
! GGATTCGTGGCTTGGCCCTT+TGG - chr1_2:56978713-56978732 None:intergenic 60.0%
GCGGAGGAAGGGAAGAAGGA+AGG - chr1_2:56980306-56980325 None:intergenic 60.0%
TGCTGGAAGGAGACTCGCAG+CGG - chr1_2:56980347-56980366 None:intergenic 60.0%
AGTGGTGCAGGTGCAGCCTT+GGG - chr1_2:56980475-56980494 None:intergenic 60.0%
AAGTGGTGCAGGTGCAGCCT+TGG - chr1_2:56980476-56980495 None:intergenic 60.0%
! AAATGGGGGGCACAGAGGGA+GGG - chr1_2:56980501-56980520 None:intergenic 60.0%
! AAAATGGGGGGCACAGAGGG+AGG - chr1_2:56980502-56980521 None:intergenic 60.0%
GCTATGTCAGCAGTCGCTCC+TGG + chr1_2:56981265-56981284 Msa0079180:CDS 60.0%
ACTCGCAGCGGCCAGGGAAA+GGG - chr1_2:56980335-56980354 None:intergenic 65.0%
AAGGAGACTCGCAGCGGCCA+GGG - chr1_2:56980341-56980360 None:intergenic 65.0%
GTGGTGCAGGTGCAGCCTTG+GGG - chr1_2:56980474-56980493 None:intergenic 65.0%
! AATGGGGGGCACAGAGGGAG+GGG - chr1_2:56980500-56980519 None:intergenic 65.0%
GCGGGCGGAGGAAGGGAAGA+AGG - chr1_2:56980310-56980329 None:intergenic 70.0%
! AAGGGGTGCGGGCGGAGGAA+GGG - chr1_2:56980317-56980336 None:intergenic 70.0%
! AAAGGGGTGCGGGCGGAGGA+AGG - chr1_2:56980318-56980337 None:intergenic 70.0%
AGCGGCCAGGGAAAGGGGTG+CGG - chr1_2:56980329-56980348 None:intergenic 70.0%
CTCGCAGCGGCCAGGGAAAG+GGG - chr1_2:56980334-56980353 None:intergenic 70.0%
GACTCGCAGCGGCCAGGGAA+AGG - chr1_2:56980336-56980355 None:intergenic 70.0%
GAAGGAGACTCGCAGCGGCC+AGG - chr1_2:56980342-56980361 None:intergenic 70.0%
GAGGGAGGGGGAAGTGGTGC+AGG - chr1_2:56980487-56980506 None:intergenic 70.0%
GGCACAGAGGGAGGGGGAAG+TGG - chr1_2:56980493-56980512 None:intergenic 70.0%
! ATGGGGGGCACAGAGGGAGG+GGG - chr1_2:56980499-56980518 None:intergenic 70.0%
! AGGGAAAGGGGTGCGGGCGG+AGG - chr1_2:56980322-56980341 None:intergenic 75.0%
TCCGCCCGCACCCCTTTCCC+TGG + chr1_2:56980321-56980340 Msa0079180:intron 75.0%
! GCCAGGGAAAGGGGTGCGGG+CGG - chr1_2:56980325-56980344 None:intergenic 75.0%
! GCGGCCAGGGAAAGGGGTGC+GGG - chr1_2:56980328-56980347 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 56977730 56982564 56977730 ID=Msa0079180;Name=Msa0079180
chr1_2 mRNA 56977730 56982564 56977730 ID=Msa0079180-mRNA-1;Parent=Msa0079180;Name=Msa0079180-mRNA-1;_AED=0.11;_eAED=0.11;_QI=224|1|1|1|0.87|0.77|9|350|247
chr1_2 exon 56977730 56977934 56977730 ID=Msa0079180-mRNA-1:exon:17927;Parent=Msa0079180-mRNA-1
chr1_2 exon 56978050 56978220 56978050 ID=Msa0079180-mRNA-1:exon:17928;Parent=Msa0079180-mRNA-1
chr1_2 exon 56978320 56978413 56978320 ID=Msa0079180-mRNA-1:exon:17929;Parent=Msa0079180-mRNA-1
chr1_2 exon 56978689 56978808 56978689 ID=Msa0079180-mRNA-1:exon:17930;Parent=Msa0079180-mRNA-1
chr1_2 exon 56978940 56978988 56978940 ID=Msa0079180-mRNA-1:exon:17931;Parent=Msa0079180-mRNA-1
chr1_2 exon 56981187 56981286 56981187 ID=Msa0079180-mRNA-1:exon:17932;Parent=Msa0079180-mRNA-1
chr1_2 exon 56981359 56981420 56981359 ID=Msa0079180-mRNA-1:exon:17933;Parent=Msa0079180-mRNA-1
chr1_2 exon 56981562 56981623 56981562 ID=Msa0079180-mRNA-1:exon:17934;Parent=Msa0079180-mRNA-1
chr1_2 exon 56982110 56982564 56982110 ID=Msa0079180-mRNA-1:exon:17935;Parent=Msa0079180-mRNA-1
chr1_2 five_prime_UTR 56977730 56977934 56977730 ID=Msa0079180-mRNA-1:five_prime_utr;Parent=Msa0079180-mRNA-1
chr1_2 five_prime_UTR 56978050 56978068 56978050 ID=Msa0079180-mRNA-1:five_prime_utr;Parent=Msa0079180-mRNA-1
chr1_2 CDS 56978069 56978220 56978069 ID=Msa0079180-mRNA-1:cds;Parent=Msa0079180-mRNA-1
chr1_2 CDS 56978320 56978413 56978320 ID=Msa0079180-mRNA-1:cds;Parent=Msa0079180-mRNA-1
chr1_2 CDS 56978689 56978808 56978689 ID=Msa0079180-mRNA-1:cds;Parent=Msa0079180-mRNA-1
chr1_2 CDS 56978940 56978988 56978940 ID=Msa0079180-mRNA-1:cds;Parent=Msa0079180-mRNA-1
chr1_2 CDS 56981187 56981286 56981187 ID=Msa0079180-mRNA-1:cds;Parent=Msa0079180-mRNA-1
chr1_2 CDS 56981359 56981420 56981359 ID=Msa0079180-mRNA-1:cds;Parent=Msa0079180-mRNA-1
chr1_2 CDS 56981562 56981623 56981562 ID=Msa0079180-mRNA-1:cds;Parent=Msa0079180-mRNA-1
chr1_2 CDS 56982110 56982214 56982110 ID=Msa0079180-mRNA-1:cds;Parent=Msa0079180-mRNA-1
chr1_2 three_prime_UTR 56982215 56982564 56982215 ID=Msa0079180-mRNA-1:three_prime_utr;Parent=Msa0079180-mRNA-1
Gene Sequence

>Msa0079180

ATGGCGGAAGATCTGGTTTTGGATACTGCAATCAGAGATTGGGTCTTAATCCCTTTATCTGTTGTTATGGTTCTTATTGGTGTGCTTCGTCACATTGTTTCCAAGCTTCTGCGTTCTTCCCAAACCCCTGATATCAAAATTGTCAGAGAAGGGCAAGTTATGCTTAGAGCTCGGAATTTACGTGCTGCGGCTAATTTTATCCCTTCTAAGGCTTTTCGTGCCCGCAAGCTTTATTATTGTAATGAGGAAAATGGTCTGTTGTTCGTTCCAAAGGGCCAAGCCACGAATCCACAAGCACAGATGTTCTCTGATCCGAACATGGCCATGGATATGATGAAGAAAAATCTTTCAATGATCATACCTCAGACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAGCCAAGATACCTTTTCCATTGACTCAAAGGTTTAGGTCCATGTTACAAAATGGAATAGACCTCAGCACAGTTGATGTTAGCTATGTCAGCAGTCGCTCCTGGTACTTTCTCAATCTGTTTGGCTTAAGAGGATTGTTTAGTCTCATCTTGGGGGAAGAAAATGCTGTAGATGATACACAAAGAATGATGCAAATGGGTGGTGGATTCGGATTTGATCCTTCAAAGGGTCTGAGTGTTGAGAAAGACAATCTTGACATAACCCAACATGACTGGGCCTTGCCAAATTTCGAGCATCATGCTGAAGATGTTTTGAAGAAAGTTATTAGCTGA

Protein sequence

>Msa0079180

MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRHIVSKLLRSSQTPDIKIVREGQVMLRARNLRAAANFIPSKAFRARKLYYCNEENGLLFVPKGQATNPQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILGEENAVDDTQRMMQMGGGFGFDPSKGLSVEKDNLDITQHDWALPNFEHHAEDVLKKVIS*