AlfalfaGEDB | Msa1101220

M. sativa cultivar zhongmu-4 / Msa1101220

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1101220	XP_003624592.1	98.824	340	4	0	1	340	1	340	0.0	703

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1101220	sp\|Q84TD6\|NAC47_ARATH	51.892	370	129	13	4	340	6	359	1.25e-107	321

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1101220	G7KZD3	98.824	340	4	0	1	340	1	340	0.0	703

TFs/TRs:

Gene ID	Type	Classification
Msa1101220	TF	NAC

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015090	Msa1101220	0.812471	4.169469e-51	-8.615850e-47
Msa0038870	Msa1101220	0.806391	8.413716e-50	-8.615850e-47
Msa0049750	Msa1101220	0.809433	1.896673e-50	-8.615850e-47
Msa0051450	Msa1101220	0.804746	1.862900e-49	-8.615850e-47
Msa0078190	Msa1101220	0.801653	8.134132e-49	-8.615850e-47
Msa0081660	Msa1101220	0.847038	1.488493e-59	-8.615850e-47
Msa0082230	Msa1101220	0.818430	1.968515e-52	-8.615850e-47
Msa0082420	Msa1101220	0.853589	2.162647e-61	-8.615850e-47
Msa0117520	Msa1101220	0.807144	5.835203e-50	-8.615850e-47
Msa0641130	Msa1101220	0.808193	3.492814e-50	-8.615850e-47
Msa0657120	Msa1101220	0.802161	6.396773e-49	-8.615850e-47
Msa0662540	Msa1101220	0.835380	1.735356e-56	-8.615850e-47
Msa0127870	Msa1101220	0.848025	7.971234e-60	-8.615850e-47
Msa0160960	Msa1101220	0.806789	6.935193e-50	-8.615850e-47
Msa0170750	Msa1101220	0.809651	1.702936e-50	-8.615850e-47
Msa0174010	Msa1101220	0.846707	1.834060e-59	-8.615850e-47
Msa0196670	Msa1101220	0.805299	1.427147e-49	-8.615850e-47
Msa0237320	Msa1101220	0.832267	1.042254e-55	-8.615850e-47
Msa0388730	Msa1101220	0.831742	1.405191e-55	-8.615850e-47
Msa0390550	Msa1101220	0.846534	2.044647e-59	-8.615850e-47
Msa0439980	Msa1101220	0.844900	5.677952e-59	-8.615850e-47
Msa1013070	Msa1101220	0.846300	2.368707e-59	-8.615850e-47
Msa1023310	Msa1101220	0.812659	3.792615e-51	-8.615850e-47
Msa1031440	Msa1101220	0.911527	5.494925e-83	-8.615850e-47
Msa1054510	Msa1101220	0.801657	8.119249e-49	-8.615850e-47
Msa1062040	Msa1101220	0.835145	1.989549e-56	-8.615850e-47
Msa1066810	Msa1101220	0.808621	2.830912e-50	-8.615850e-47
Msa1070520	Msa1101220	0.947209	1.048153e-105	-8.615850e-47
Msa1094280	Msa1101220	0.805516	1.285443e-49	-8.615850e-47
Msa1101220	Msa1107200	0.842729	2.164090e-58	-8.615850e-47
Msa1101220	Msa1150780	0.805921	1.057153e-49	-8.615850e-47
Msa1101220	Msa1158370	0.986402	1.142410e-166	-8.615850e-47
Msa1101220	Msa1190520	0.803113	4.070050e-49	-8.615850e-47
Msa1101220	Msa1208370	0.804133	2.500142e-49	-8.615850e-47
Msa1101220	Msa1208380	0.802874	4.561246e-49	-8.615850e-47
Msa1101220	Msa1220930	0.823220	1.557668e-53	-8.615850e-47
Msa1101220	Msa1244960	0.809209	2.118804e-50	-8.615850e-47
Msa1101220	Msa1266150	0.812370	4.386254e-51	-8.615850e-47
Msa1101220	Msa1325290	0.804074	2.572181e-49	-8.615850e-47
Msa1101220	Msa1359840	0.809611	1.737015e-50	-8.615850e-47
Msa1101220	Msa1369920	-0.813818	2.111787e-51	-8.615850e-47
Msa1101220	Msa1370810	0.811754	5.976424e-51	-8.615850e-47
Msa1101220	Msa1400930	0.818959	1.493058e-52	-8.615850e-47
Msa1101220	Msa1404290	0.822113	2.818661e-53	-8.615850e-47
Msa1101220	Msa1419840	0.815627	8.389124e-52	-8.615850e-47
Msa1101220	Msa1438840	0.823535	1.314893e-53	-8.615850e-47
Msa0256390	Msa1101220	0.819444	1.157750e-52	-8.615850e-47
Msa0271790	Msa1101220	0.809447	1.883731e-50	-8.615850e-47
Msa0274740	Msa1101220	0.819604	1.064593e-52	-8.615850e-47
Msa0277960	Msa1101220	0.814624	1.401613e-51	-8.615850e-47
Msa0315540	Msa1101220	0.810558	1.085919e-50	-8.615850e-47
Msa0331020	Msa1101220	0.807953	3.928503e-50	-8.615850e-47
Msa0484630	Msa1101220	0.813557	2.410149e-51	-8.615850e-47
Msa0542560	Msa1101220	0.803964	2.710596e-49	-8.615850e-47
Msa0545050	Msa1101220	0.814985	1.165612e-51	-8.615850e-47
Msa0566350	Msa1101220	0.800617	1.325299e-48	-8.615850e-47
Msa0600590	Msa1101220	0.806725	7.154200e-50	-8.615850e-47
Msa0907430	Msa1101220	0.805631	1.215823e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1101220	MtrunA17_Chr7g0252971	98.824	340	4	0	1	340	1	340	0.0	703
Msa1101220	MtrunA17_Chr2g0318101	67.172	198	46	5	2	187	9	199	1.49e-91	277
Msa1101220	MtrunA17_Chr4g0047841	64.211	190	42	3	3	173	10	192	3.75e-84	258
Msa1101220	MtrunA17_Chr5g0417791	54.202	238	85	5	8	244	3	217	2.98e-80	245
Msa1101220	MtrunA17_Chr7g0263931	50.763	262	96	7	5	265	8	237	1.41e-79	246
Msa1101220	MtrunA17_Chr4g0042561	55.310	226	80	5	6	231	7	211	5.50e-79	242
Msa1101220	MtrunA17_Chr2g0326361	65.714	175	51	3	8	181	14	180	9.65e-79	243
Msa1101220	MtrunA17_Chr3g0124761	61.497	187	60	3	5	191	4	178	1.55e-78	242
Msa1101220	MtrunA17_Chr8g0384721	58.564	181	65	1	8	188	7	177	1.04e-73	229
Msa1101220	MtrunA17_Chr2g0318081	63.314	169	49	3	5	173	13	168	3.56e-73	230
Msa1101220	MtrunA17_Chr8g0359921	63.429	175	47	4	1	169	1	164	6.80e-73	229
Msa1101220	MtrunA17_Chr3g0130731	61.212	165	53	2	5	169	4	157	4.05e-68	215
Msa1101220	MtrunA17_Chr5g0417001	43.396	265	127	6	10	260	16	271	2.02e-61	201
Msa1101220	MtrunA17_Chr2g0309891	49.231	195	78	5	8	200	6	181	1.56e-59	195
Msa1101220	MtrunA17_Chr6g0453131	55.030	169	63	4	7	170	14	174	1.73e-59	196
Msa1101220	MtrunA17_Chr3g0091921	38.816	304	153	6	5	291	13	300	3.13e-59	192
Msa1101220	MtrunA17_Chr6g0484441	55.422	166	59	3	5	170	2	152	3.39e-59	193
Msa1101220	MtrunA17_Chr6g0453451	52.410	166	68	2	8	173	20	174	7.32e-59	192
Msa1101220	MtrunA17_Chr8g0361731	54.217	166	64	4	10	170	16	174	1.91e-58	193
Msa1101220	MtrunA17_Chr7g0253011	52.874	174	66	4	2	170	10	172	2.28e-57	190
Msa1101220	MtrunA17_Chr7g0214071	51.705	176	65	4	5	178	12	169	2.63e-57	186
Msa1101220	MtrunA17_Chr4g0060931	53.614	166	66	3	5	170	14	168	5.06e-57	189
Msa1101220	MtrunA17_Chr4g0018391	49.701	167	66	3	6	169	5	156	2.00e-55	184
Msa1101220	MtrunA17_Chr6g0481091	44.271	192	81	4	6	184	4	182	2.25e-55	181
Msa1101220	MtrunA17_Chr2g0316971	53.333	165	68	2	6	170	21	176	3.79e-55	184
Msa1101220	MtrunA17_Chr5g0398971	49.102	167	69	3	6	169	5	158	4.14e-55	183
Msa1101220	MtrunA17_Chr1g0147421	49.727	183	74	4	8	187	27	194	4.95e-55	183
Msa1101220	MtrunA17_Chr4g0017921	47.027	185	79	3	1	182	1	169	5.35e-55	183
Msa1101220	MtrunA17_Chr3g0139331	50.292	171	68	3	2	170	5	160	2.18e-54	181
Msa1101220	MtrunA17_Chr2g0309331	47.368	171	73	3	2	169	4	160	5.40e-54	180
Msa1101220	MtrunA17_Chr5g0405211	46.196	184	79	4	1	180	1	168	6.15e-54	180
Msa1101220	MtrunA17_Chr5g0433781	50.877	171	69	3	6	174	4	161	7.84e-54	187
Msa1101220	MtrunA17_Chr4g0056541	47.904	167	69	3	6	169	5	156	2.19e-53	179
Msa1101220	MtrunA17_Chr8g0372121	47.059	170	68	4	5	169	3	155	3.63e-53	177
Msa1101220	MtrunA17_Chr1g0183741	42.857	203	89	3	8	210	10	185	4.22e-53	176
Msa1101220	MtrunA17_Chr3g0109821	52.663	169	62	4	6	170	4	158	1.90e-52	183
Msa1101220	MtrunA17_Chr5g0442771	49.091	165	73	2	10	169	20	178	2.32e-52	175
Msa1101220	MtrunA17_Chr6g0461661	47.753	178	84	3	7	184	17	185	6.03e-52	176
Msa1101220	MtrunA17_Chr5g0400461	47.647	170	78	4	6	173	4	164	1.56e-51	174
Msa1101220	MtrunA17_Chr8g0346001	47.977	173	73	4	5	169	12	175	3.05e-51	176
Msa1101220	MtrunA17_Chr2g0312321	46.707	167	75	3	5	171	8	160	4.99e-51	171
Msa1101220	MtrunA17_Chr1g0200561	47.273	165	69	3	8	169	19	168	5.77e-51	172
Msa1101220	MtrunA17_Chr4g0076731	50.920	163	62	3	10	170	56	202	7.87e-51	174
Msa1101220	MtrunA17_Chr2g0311651	47.337	169	76	3	10	170	24	187	1.17e-50	171
Msa1101220	MtrunA17_Chr4g0054791	45.856	181	82	4	8	182	6	176	2.55e-49	167
Msa1101220	MtrunA17_Chr7g0261411	48.125	160	68	3	8	167	10	154	2.62e-49	166
Msa1101220	MtrunA17_Chr8g0385991	46.774	186	79	6	6	183	12	185	2.94e-49	164
Msa1101220	MtrunA17_Chr2g0311661	47.337	169	76	3	10	170	23	186	1.37e-48	165
Msa1101220	MtrunA17_Chr3g0131911	49.405	168	76	3	6	171	12	172	1.49e-48	163
Msa1101220	MtrunA17_Chr7g0217721	44.565	184	82	2	1	173	12	186	1.43e-47	164
Msa1101220	MtrunA17_Chr4g0038751	37.692	260	137	5	1	251	9	252	2.74e-47	161
Msa1101220	MtrunA17_Chr3g0130101	43.827	162	76	3	10	169	9	157	5.64e-46	160
Msa1101220	MtrunA17_Chr3g0144271	53.237	139	57	2	5	142	20	151	1.17e-45	160
Msa1101220	MtrunA17_Chr5g0428991	46.961	181	73	4	8	182	25	188	1.47e-45	164
Msa1101220	MtrunA17_Chr7g0217711	50.704	142	61	1	1	142	12	144	7.52e-44	149
Msa1101220	MtrunA17_Chr1g0197351	47.024	168	76	3	6	169	40	198	8.37e-44	157
Msa1101220	MtrunA17_Chr1g0201021	45.399	163	74	4	10	170	21	170	1.04e-43	158
Msa1101220	MtrunA17_Chr3g0128151	40.000	240	110	7	8	231	22	243	1.78e-43	158
Msa1101220	MtrunA17_Chr1g0197361	39.024	205	105	6	10	211	10	197	1.02e-42	155
Msa1101220	MtrunA17_Chr3g0128111	40.394	203	103	4	11	211	45	231	5.47e-42	146
Msa1101220	MtrunA17_Chr3g0092671	39.336	211	103	7	10	217	7	195	7.80e-42	152
Msa1101220	MtrunA17_Chr8g0364791	42.683	164	79	3	8	169	6	156	1.80e-41	150
Msa1101220	MtrunA17_Chr8g0345671	44.578	166	66	6	7	166	10	155	1.16e-39	144
Msa1101220	MtrunA17_Chr8g0384201	41.463	164	81	3	8	169	6	156	6.80e-39	144
Msa1101220	MtrunA17_Chr4g0026141	40.719	167	81	5	8	167	5	160	7.84e-35	128
Msa1101220	MtrunA17_Chr7g0266701	32.932	249	138	8	7	234	3	243	9.26e-34	125
Msa1101220	MtrunA17_Chr2g0321741	37.640	178	87	6	28	202	12	168	1.21e-33	127
Msa1101220	MtrunA17_Chr8g0345691	40.606	165	74	6	7	166	11	156	1.32e-33	128
Msa1101220	MtrunA17_Chr8g0345711	40.120	167	82	6	8	164	12	170	3.34e-33	121
Msa1101220	MtrunA17_Chr2g0321631	36.408	206	99	8	9	199	5	193	1.55e-32	121
Msa1101220	MtrunA17_Chr4g0050701	36.747	166	88	3	8	171	11	161	2.52e-32	119
Msa1101220	MtrunA17_Chr3g0113001	48.718	117	50	2	57	173	14	120	2.10e-31	120
Msa1101220	MtrunA17_Chr8g0345731	39.855	138	71	5	8	140	24	154	2.94e-27	105
Msa1101220	MtrunA17_Chr8g0345721	36.970	165	64	5	11	143	38	194	3.37e-26	103
Msa1101220	MtrunA17_Chr8g0384351	37.791	172	73	7	1	171	2	140	3.82e-26	102
Msa1101220	MtrunA17_Chr8g0345741	41.129	124	62	4	21	141	4	119	6.37e-25	98.6
Msa1101220	MtrunA17_Chr8g0345701	38.365	159	71	6	6	147	5	153	2.73e-24	97.8
Msa1101220	MtrunA17_Chr3g0113031	44.660	103	48	1	71	173	3	96	1.03e-23	98.6
Msa1101220	MtrunA17_Chr7g0243371	51.220	82	33	1	61	142	17	91	1.95e-22	90.9
Msa1101220	MtrunA17_Chr7g0251661	31.690	142	84	4	1	140	3	133	2.24e-20	86.7
Msa1101220	MtrunA17_Chr3g0130321	34.104	173	89	8	8	171	7	163	5.93e-20	86.7
Msa1101220	MtrunA17_Chr7g0251671	31.126	151	89	5	7	154	9	147	1.57e-18	81.6
Msa1101220	MtrunA17_Chr7g0251651	32.593	135	78	4	8	140	18	141	8.03e-18	80.5
Msa1101220	MtrunA17_Chr7g0274971	30.120	166	94	7	14	172	11	161	5.19e-12	64.7
Msa1101220	MtrunA17_Chr3g0113011	50.000	56	28	0	1	56	12	67	4.16e-11	58.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1101220	AT3G04070.1	51.892	370	129	13	4	340	6	359	1.27e-108	321
Msa1101220	AT3G04070.2	53.390	354	132	13	4	340	6	343	2.81e-108	320
Msa1101220	AT1G61110.1	68.927	177	39	4	1	169	9	177	3.15e-84	258
Msa1101220	AT1G69490.1	51.698	265	112	5	3	263	4	256	2.24e-83	254
Msa1101220	AT3G15510.1	68.639	169	39	3	12	173	21	182	4.33e-81	251
Msa1101220	AT1G01720.1	56.219	201	78	1	8	208	7	197	7.81e-77	238
Msa1101220	AT1G52880.1	68.902	164	40	3	12	170	21	178	2.10e-76	238
Msa1101220	AT1G77450.1	66.049	162	44	3	8	169	10	160	2.39e-74	230
Msa1101220	AT4G27410.2	63.253	166	48	3	5	170	11	163	2.50e-74	231
Msa1101220	AT3G15500.1	62.722	169	50	3	5	173	11	166	3.86e-72	227
Msa1101220	AT1G52890.1	61.538	169	52	2	5	173	11	166	4.25e-72	226
Msa1101220	AT4G27410.3	57.377	183	48	4	5	170	11	180	4.54e-70	221
Msa1101220	AT5G08790.1	60.241	166	55	2	5	169	4	159	3.40e-69	218
Msa1101220	AT5G63790.1	60.843	166	54	2	5	169	47	202	7.31e-69	218
Msa1101220	AT5G63790.2	60.843	166	54	2	5	169	57	212	1.10e-68	218
Msa1101220	AT3G18400.1	53.846	169	64	3	5	173	2	156	6.79e-61	197
Msa1101220	AT5G39610.1	53.939	165	65	3	5	169	17	170	1.34e-58	191
Msa1101220	AT5G61430.1	44.304	237	114	6	5	239	13	233	5.56e-58	191
Msa1101220	AT5G07680.1	53.614	166	66	3	5	170	14	168	9.84e-58	190
Msa1101220	AT2G33480.2	53.659	164	58	4	8	171	15	160	1.06e-57	188
Msa1101220	AT2G33480.1	53.659	164	60	4	8	171	15	162	1.80e-57	187
Msa1101220	AT5G53950.1	52.907	172	72	2	8	179	17	179	2.02e-57	191
Msa1101220	AT5G07680.2	53.659	164	65	3	7	170	2	154	4.18e-57	188
Msa1101220	AT5G13180.1	54.819	166	60	3	8	173	14	164	1.53e-56	184
Msa1101220	AT5G18270.2	49.714	175	78	2	2	176	15	179	3.70e-56	186
Msa1101220	AT3G29035.1	60.870	138	45	2	5	142	21	149	6.89e-56	185
Msa1101220	AT3G17730.1	39.921	253	131	6	6	253	4	240	7.47e-56	182
Msa1101220	AT3G04060.1	36.644	292	136	7	6	270	18	287	8.64e-56	185
Msa1101220	AT5G18270.1	49.143	175	79	2	2	176	15	179	1.56e-55	184
Msa1101220	AT5G39820.1	49.180	183	65	5	10	173	22	195	6.54e-55	183
Msa1101220	AT2G24430.2	52.121	165	67	2	8	172	16	168	6.65e-55	182
Msa1101220	AT2G24430.1	52.121	165	67	2	8	172	16	168	6.65e-55	182
Msa1101220	AT1G26870.1	51.786	168	69	3	8	170	16	176	6.83e-55	185
Msa1101220	AT3G03200.1	50.909	165	65	4	8	169	6	157	8.62e-55	186
Msa1101220	AT3G15170.1	44.595	222	96	5	8	224	20	219	1.27e-54	181
Msa1101220	AT1G76420.1	50.888	169	65	4	5	170	19	172	5.99e-54	180
Msa1101220	AT1G65910.1	48.235	170	73	3	6	173	4	160	2.53e-53	185
Msa1101220	AT1G71930.2	45.833	168	73	3	5	169	6	158	2.68e-53	178
Msa1101220	AT1G71930.1	45.833	168	73	3	5	169	6	158	2.68e-53	178
Msa1101220	AT5G17260.1	49.701	167	68	4	6	169	4	157	7.99e-53	181
Msa1101220	AT4G10350.1	47.486	179	78	3	8	183	9	174	8.25e-53	177
Msa1101220	AT1G12260.2	45.930	172	75	3	6	174	5	161	8.38e-53	177
Msa1101220	AT5G62380.2	43.655	197	90	5	7	199	6	185	1.01e-52	177
Msa1101220	AT5G62380.1	43.655	197	90	5	7	199	6	185	1.01e-52	177
Msa1101220	AT1G12260.1	45.930	172	75	3	6	174	5	161	1.23e-52	179
Msa1101220	AT2G18060.3	39.076	238	120	6	8	238	9	228	1.25e-52	177
Msa1101220	AT2G18060.1	39.076	238	120	6	8	238	9	228	1.25e-52	177
Msa1101220	AT2G43000.1	49.375	160	69	2	10	169	20	167	4.27e-52	174
Msa1101220	AT2G46770.1	46.893	177	73	4	5	169	13	180	4.70e-52	176
Msa1101220	AT4G36160.2	40.969	227	99	7	7	226	13	211	5.77e-52	176
Msa1101220	AT4G36160.1	40.969	227	99	7	7	226	9	207	6.15e-52	176
Msa1101220	AT4G36160.3	40.969	227	99	7	7	226	9	207	6.15e-52	176
Msa1101220	AT1G33280.1	48.555	173	68	4	1	169	1	156	8.29e-52	174
Msa1101220	AT1G62700.1	47.399	173	69	4	6	173	5	160	8.62e-52	176
Msa1101220	AT1G62700.2	47.399	173	69	4	6	173	5	160	8.62e-52	176
Msa1101220	AT1G79580.3	47.953	171	71	3	2	169	11	166	1.40e-51	175
Msa1101220	AT1G79580.5	47.953	171	71	3	2	169	11	166	1.40e-51	175
Msa1101220	AT1G79580.4	47.953	171	71	3	2	169	11	166	1.40e-51	175
Msa1101220	AT1G79580.2	47.953	171	71	3	2	169	11	166	1.40e-51	175
Msa1101220	AT1G79580.1	47.953	171	71	3	2	169	11	166	1.40e-51	175
Msa1101220	AT3G12977.1	49.398	166	70	6	5	169	15	167	3.34e-51	171
Msa1101220	AT1G56010.2	46.988	166	77	3	5	169	16	171	6.70e-51	172
Msa1101220	AT2G02450.2	52.174	161	61	4	10	169	53	198	1.73e-50	173
Msa1101220	AT2G02450.1	52.174	161	61	4	10	169	53	198	1.78e-50	172
Msa1101220	AT5G66300.1	45.783	166	73	3	7	169	11	162	6.53e-50	169
Msa1101220	AT3G61910.1	44.944	178	77	4	5	170	8	176	1.36e-49	169
Msa1101220	AT3G10480.2	48.795	166	70	3	6	169	25	177	1.39e-49	172
Msa1101220	AT4G17980.2	47.059	170	71	4	8	171	6	162	1.55e-49	167
Msa1101220	AT4G17980.1	46.328	177	74	5	1	171	1	162	1.60e-49	167
Msa1101220	AT3G10480.1	48.795	166	71	3	6	169	25	178	1.61e-49	172
Msa1101220	AT1G33060.2	51.220	164	65	3	8	169	24	174	2.13e-49	175
Msa1101220	AT3G10500.1	47.305	167	73	3	6	170	7	160	2.30e-49	173
Msa1101220	AT1G33060.1	51.220	164	65	3	8	169	24	174	2.37e-49	175
Msa1101220	AT5G46590.1	46.988	166	75	3	8	171	6	160	2.58e-49	167
Msa1101220	AT1G32770.1	46.552	174	75	5	5	169	13	177	4.83e-49	168
Msa1101220	AT1G54330.1	49.091	165	66	4	7	169	5	153	8.03e-49	166
Msa1101220	AT5G04410.1	47.305	167	73	3	6	170	7	160	8.57e-49	172
Msa1101220	AT3G10490.1	46.471	170	77	3	6	173	25	182	9.24e-49	164
Msa1101220	AT5G46590.2	51.064	141	59	2	8	146	6	138	1.08e-48	165
Msa1101220	AT4G35580.3	47.753	178	78	3	7	182	8	172	2.38e-48	170
Msa1101220	AT4G35580.2	47.753	178	78	3	7	182	8	172	2.42e-48	170
Msa1101220	AT1G32510.1	45.856	181	86	4	8	181	6	181	2.51e-48	164
Msa1101220	AT4G35580.1	47.753	178	78	3	7	182	8	172	2.77e-48	170
Msa1101220	AT3G10490.2	47.590	166	73	3	6	169	25	178	2.17e-47	166
Msa1101220	AT4G28530.1	45.055	182	69	5	6	171	8	174	4.17e-47	163
Msa1101220	AT2G17040.1	46.914	162	69	3	10	170	8	153	4.29e-47	160
Msa1101220	AT5G24590.2	42.654	211	98	6	7	206	12	210	1.40e-46	164
Msa1101220	AT3G49530.2	43.956	182	88	3	7	186	12	181	2.77e-45	159
Msa1101220	AT3G49530.1	43.956	182	88	3	7	186	12	181	6.03e-45	160
Msa1101220	AT3G10480.3	41.709	199	69	4	6	169	25	211	1.70e-44	160
Msa1101220	AT1G34180.3	46.012	163	73	5	10	170	18	167	2.47e-44	158
Msa1101220	AT5G64060.1	43.114	167	80	3	5	169	3	156	8.08e-44	154
Msa1101220	AT3G12910.1	40.278	216	111	5	10	214	23	231	9.46e-44	153
Msa1101220	AT1G34180.1	44.785	163	75	4	10	170	18	167	1.57e-43	158
Msa1101220	AT1G34190.1	44.785	163	75	5	10	170	18	167	5.35e-43	156
Msa1101220	AT2G27300.1	41.081	185	88	4	1	184	7	171	1.89e-42	150
Msa1101220	AT1G34180.4	42.857	175	73	5	10	170	18	179	2.55e-42	153
Msa1101220	AT5G09330.5	44.643	168	76	4	5	169	3	156	8.43e-42	152
Msa1101220	AT5G09330.2	44.643	168	76	4	5	169	3	156	8.43e-42	152
Msa1101220	AT5G09330.4	44.643	168	76	4	5	169	3	156	8.43e-42	152
Msa1101220	AT5G09330.3	44.643	168	76	4	5	169	3	156	8.43e-42	152
Msa1101220	AT5G09330.1	44.643	168	76	4	5	169	3	156	8.43e-42	152
Msa1101220	AT1G34180.2	42.857	175	73	5	10	170	18	179	1.68e-41	152
Msa1101220	AT3G44290.2	40.491	163	76	3	10	171	16	158	1.50e-39	139
Msa1101220	AT3G44290.1	40.491	163	76	3	10	171	16	158	9.56e-39	140
Msa1101220	AT5G22290.1	40.625	160	75	4	10	168	23	163	3.32e-38	139
Msa1101220	AT5G04395.1	41.615	161	75	2	5	152	25	179	1.76e-37	133
Msa1101220	AT1G32870.2	46.988	166	71	5	8	170	10	161	3.95e-37	140
Msa1101220	AT1G32870.1	46.988	166	71	5	8	170	10	161	4.44e-37	140
Msa1101220	AT1G32870.3	46.988	166	71	5	8	170	46	197	7.38e-37	139
Msa1101220	AT5G61430.2	46.207	145	63	4	57	201	2	131	2.70e-34	127
Msa1101220	AT1G56010.1	48.673	113	48	2	57	169	2	104	1.10e-32	122
Msa1101220	AT2G33480.3	52.252	111	40	4	61	171	8	105	2.13e-31	117
Msa1101220	AT5G64530.1	35.838	173	82	4	7	169	2	155	3.61e-31	116
Msa1101220	AT4G10350.2	46.341	123	53	2	61	183	18	127	7.58e-31	118
Msa1101220	AT3G12977.2	48.673	113	46	4	57	169	14	114	9.02e-31	116
Msa1101220	AT5G64530.2	41.304	138	62	3	7	144	2	120	3.49e-30	113
Msa1101220	AT3G44350.2	37.647	170	86	6	8	170	5	161	9.87e-29	111
Msa1101220	AT4G28530.2	48.182	110	41	2	6	99	8	117	6.98e-28	111
Msa1101220	AT3G44350.1	39.310	145	71	4	8	145	5	139	1.41e-27	106
Msa1101220	AT5G22380.1	38.415	164	83	6	11	167	8	160	1.20e-26	105
Msa1101220	AT4G01520.1	35.714	182	98	6	9	186	5	171	3.97e-26	106
Msa1101220	AT1G02230.1	41.912	136	66	5	9	140	4	130	1.07e-25	105
Msa1101220	AT4G01540.4	35.556	180	97	6	11	186	7	171	2.30e-25	105
Msa1101220	AT4G01540.3	35.556	180	97	6	11	186	7	171	3.34e-25	105
Msa1101220	AT4G01550.1	40.741	135	71	3	11	142	7	135	4.11e-25	105
Msa1101220	AT4G01540.1	35.556	180	97	6	11	186	7	171	7.29e-25	105
Msa1101220	AT4G01540.2	35.165	182	95	6	11	186	7	171	7.32e-25	104
Msa1101220	AT3G04420.2	41.176	136	67	4	9	140	4	130	3.51e-24	100
Msa1101220	AT1G02250.1	41.912	136	66	6	9	140	4	130	1.08e-22	97.8
Msa1101220	AT2G43000.2	44.000	100	44	2	70	169	2	89	5.81e-22	92.4
Msa1101220	AT5G50820.1	28.713	202	120	7	1	199	10	190	3.49e-20	87.4
Msa1101220	AT5G14000.2	37.681	138	73	4	8	143	15	141	4.55e-20	85.9
Msa1101220	AT5G14000.1	37.681	138	73	4	8	143	15	141	1.29e-19	86.3
Msa1101220	AT1G01010.1	38.235	136	73	6	11	140	6	136	5.28e-19	87.8
Msa1101220	AT1G02220.1	36.364	143	75	5	9	147	4	134	6.97e-19	87.4
Msa1101220	AT3G56530.1	33.918	171	89	6	3	167	47	199	2.33e-18	84.7
Msa1101220	AT3G10490.4	43.333	90	39	2	81	170	2	79	1.49e-17	82.8
Msa1101220	AT3G10490.3	43.333	90	39	2	81	170	2	79	1.49e-17	82.8
Msa1101220	AT2G18060.2	31.847	157	85	5	86	238	2	140	4.93e-16	77.4
Msa1101220	AT3G55210.1	30.337	178	85	8	8	167	11	167	8.61e-15	73.9
Msa1101220	AT3G04430.1	33.838	198	106	7	14	197	6	192	2.24e-13	68.6

Find 102 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAAGAATCTTTGAGCTTAAT+AGG	0.214933	7_3:-31858614	None:intergenic
CCAAACAGGGCAGCTGCTTC+AGG	0.233922	7_3:+31858410	Msa1101220:CDS
CAAAGGGTATTAAGACTAAT+TGG	0.272980	7_3:+31858555	Msa1101220:CDS
ATGATGACATTGGTGTAATT+TGG	0.285260	7_3:-31859468	None:intergenic
TCATACTGTGAATTGATGTT+AGG	0.286405	7_3:-31859284	None:intergenic
AGGAAGGGTTAGGACCTATT+TGG	0.299023	7_3:+31859574	Msa1101220:three_prime_UTR
CTGTTTGGCCTTGCACCATT+TGG	0.309858	7_3:-31858395	None:intergenic
CCTAAAACCTGGTGGCAAAT+TGG	0.316582	7_3:-31858035	None:intergenic
TCAGGAATTGGAACAAGTTC+AGG	0.323297	7_3:+31859092	Msa1101220:CDS
TAAGTAAGATTTCTAGAAGT+TGG	0.342238	7_3:+31859440	Msa1101220:three_prime_UTR
TAATTTGTTTGTGTGTTGTT+GGG	0.346175	7_3:+31859695	Msa1101220:three_prime_UTR
GAACATTATTGGTGTCAAAA+AGG	0.347470	7_3:+31858505	Msa1101220:CDS
CCTGAAGCAGCTGCCCTGTT+TGG	0.348250	7_3:-31858410	None:intergenic
AATTGTTGCTAGTGTTGATT+TGG	0.352114	7_3:-31859151	None:intergenic
TGTTTGGCCTTGCACCATTT+GGG	0.356073	7_3:-31858394	None:intergenic
GAACTCAAGTATTTCTTTGA+TGG	0.365426	7_3:-31859248	None:intergenic
CAAATGGTGCAAGGCCAAAC+AGG	0.366982	7_3:+31858396	Msa1101220:CDS
CAATTAGTCTTAATACCCTT+TGG	0.368121	7_3:-31858554	None:intergenic
TGTATGCTTCACACCAAGTT+TGG	0.370260	7_3:+31857932	Msa1101220:five_prime_UTR
AGATCACAGGAGAACATTAT+TGG	0.371327	7_3:+31858494	Msa1101220:CDS
TCCAACAACCCATCAGGAAT+TGG	0.378181	7_3:+31859080	Msa1101220:CDS
AACAGAATCATCAGAAACTA+TGG	0.378730	7_3:+31858884	Msa1101220:CDS
ATTTATTCAGTCTTCAACTA+AGG	0.378998	7_3:-31859614	None:intergenic
TGTTTGTGCAGTTGGATGAT+TGG	0.382209	7_3:+31858817	Msa1101220:intron
AGTAGTCCATAGCATCTAAT+AGG	0.386901	7_3:-31859028	None:intergenic
TTAATTTGTTTGTGTGTTGT+TGG	0.390051	7_3:+31859694	Msa1101220:three_prime_UTR
GGGCAGCTGCTTCAGGGTAT+TGG	0.391648	7_3:+31858417	Msa1101220:CDS
TAGATAAGTATTGTACTGAT+TGG	0.408821	7_3:+31859750	Msa1101220:three_prime_UTR
CATACTGTGAATTGATGTTA+GGG	0.411622	7_3:-31859283	None:intergenic
ACCAATGTCATCATTAAGTA+AGG	0.414843	7_3:+31859477	Msa1101220:three_prime_UTR
GTTTGTGCAGTTGGATGATT+GGG	0.418531	7_3:+31858818	Msa1101220:intron
AATATCAACTTCAGCAATGA+TGG	0.422653	7_3:-31858131	None:intergenic
CTTCATTTGGCGAGAAAGAA+TGG	0.427536	7_3:+31858342	Msa1101220:CDS
TGTACACTACTATTTCTGAT+AGG	0.428778	7_3:-31859666	None:intergenic
TGTTTGTGTGTTGTTGGGGT+TGG	0.440431	7_3:+31859700	Msa1101220:three_prime_UTR
CCTCATCTATGTTTGAAAGC+TGG	0.441085	7_3:-31859214	None:intergenic
TCCAATTCCTGATGGGTTGT+TGG	0.442082	7_3:-31859081	None:intergenic
TAGGAATTGAAGGAAGGGTT+AGG	0.442190	7_3:+31859564	Msa1101220:three_prime_UTR
TTCAAACCTATTAGATGCTA+TGG	0.444967	7_3:+31859022	Msa1101220:CDS
ACATGGCAATGATGCCACTA+TGG	0.444972	7_3:-31858462	None:intergenic
TGAAGTTGATATTTATAAGT+TGG	0.446373	7_3:+31858141	Msa1101220:CDS
ACTTCAGCAATGATGGAAAC+AGG	0.451615	7_3:-31858124	None:intergenic
GAAAATTCCAACAACCCATC+AGG	0.469177	7_3:+31859074	Msa1101220:CDS
GAACTTGTTCCAATTCCTGA+TGG	0.472125	7_3:-31859089	None:intergenic
AGCATCTAATAGGTTTGAAA+AGG	0.474398	7_3:-31859018	None:intergenic
TATTTATAAGTTGGATCCAT+GGG	0.475414	7_3:+31858150	Msa1101220:CDS
TCATCAAAGATTGCTTCATA+AGG	0.476729	7_3:-31859313	None:intergenic
AACTCAAGTATTTCTTTGAT+GGG	0.477999	7_3:-31859247	None:intergenic
CCACAGACCAATTTGCCACC+AGG	0.478013	7_3:+31858028	Msa1101220:CDS
GGGTTAGGACCTATTTGGTA+TGG	0.488810	7_3:+31859579	Msa1101220:three_prime_UTR
AACTTGTTCCAATTCCTGAT+GGG	0.488918	7_3:-31859088	None:intergenic
ATATTTATAAGTTGGATCCA+TGG	0.488986	7_3:+31858149	Msa1101220:CDS
AACTCATTCTTCACTACCTT+AGG	0.494410	7_3:+31858077	Msa1101220:CDS
ATTGTTGCTAGTGTTGATTT+GGG	0.495042	7_3:-31859150	None:intergenic
AGAAACTATGGTTGGTGAAG+TGG	0.502853	7_3:+31858896	Msa1101220:CDS
CAAACAGGGCAGCTGCTTCA+GGG	0.503732	7_3:+31858411	Msa1101220:CDS
AAGCTGGTGCTTTAAAGTGT+TGG	0.507075	7_3:-31859198	None:intergenic
TTTGGGTACTTTCTATCTCT+AGG	0.511526	7_3:-31858377	None:intergenic
TTAGTCTTAATACCCTTTGG+AGG	0.513448	7_3:-31858551	None:intergenic
TACAAAGGAAAACCTCCAAA+GGG	0.513769	7_3:+31858539	Msa1101220:CDS
TGCTTTAAAGTGTTGGATTG+AGG	0.514061	7_3:-31859191	None:intergenic
CTGGTGGCAAATTGGTCTGT+GGG	0.514571	7_3:-31858027	None:intergenic
AATTTGTTTGTGTGTTGTTG+GGG	0.522454	7_3:+31859696	Msa1101220:three_prime_UTR
AGAGATAGAAAGTACCCAAA+TGG	0.527590	7_3:+31858380	Msa1101220:CDS
GGTCCTCATCATCAATATCA+AGG	0.532163	7_3:+31859353	Msa1101220:CDS
GCATCATTGCCATGTGGAGG+AGG	0.534639	7_3:+31858470	Msa1101220:CDS
GCAATCTAAACTCACCCTCA+TGG	0.537490	7_3:-31858636	None:intergenic
AGATAAGTATTGTACTGATT+GGG	0.552857	7_3:+31859751	Msa1101220:three_prime_UTR
TTGGATCCATGGGATTTACC+AGG	0.553332	7_3:+31858160	Msa1101220:CDS
GATGGAAACAGGCAAGGGAA+TGG	0.553802	7_3:-31858113	None:intergenic
TAGCCTTGATATTGATGATG+AGG	0.557215	7_3:-31859356	None:intergenic
AGAATGAGTTCTGCATCAGT+AGG	0.563104	7_3:-31858064	None:intergenic
TTACAAAGGAAAACCTCCAA+AGG	0.565027	7_3:+31858538	Msa1101220:CDS
AGCAATGATGGAAACAGGCA+AGG	0.566156	7_3:-31858119	None:intergenic
TCCTTACTTAATGATGACAT+TGG	0.569887	7_3:-31859478	None:intergenic
TACAAACCTGGTAAATCCCA+TGG	0.570239	7_3:-31858166	None:intergenic
TGTGATCTTCCTCCTCCACA+TGG	0.570951	7_3:-31858479	None:intergenic
TCAGGGTATTGGAAAGCCAC+TGG	0.577725	7_3:+31858428	Msa1101220:CDS
ATGACATTGGTGTAATTTGG+TGG	0.584558	7_3:-31859465	None:intergenic
ATGTGGAGGAGGAAGATCAC+AGG	0.589698	7_3:+31858481	Msa1101220:CDS
GCTCAAAGATTCTTCCATGA+GGG	0.597300	7_3:+31858622	Msa1101220:CDS
AGATAAGAAGCTGCTCAACA+TGG	0.598584	7_3:-31859051	None:intergenic
GAATGAGTTCTGCATCAGTA+GGG	0.601787	7_3:-31858063	None:intergenic
CCTGGTGGCAAATTGGTCTG+TGG	0.602988	7_3:-31858028	None:intergenic
GAATCATCAGAAACTATGGT+TGG	0.606547	7_3:+31858888	Msa1101220:CDS
GGAAACAGGCAAGGGAATGG+AGG	0.614063	7_3:-31858110	None:intergenic
GATGTTAGGGAAATTGCAAG+AGG	0.615894	7_3:-31859270	None:intergenic
TATGGTCTTATCAGTGCCAG+TGG	0.623985	7_3:-31858444	None:intergenic
TGAGTTCTGCATCAGTAGGG+TGG	0.625467	7_3:-31858060	None:intergenic
GAAAGTACCCAAATGGTGCA+AGG	0.625637	7_3:+31858387	Msa1101220:CDS
GCAATGATGGAAACAGGCAA+GGG	0.627238	7_3:-31858118	None:intergenic
TGGTGGCAAATTGGTCTGTG+GGG	0.627247	7_3:-31858026	None:intergenic
GTAGGGTGGAACCTAAAACC+TGG	0.637724	7_3:-31858046	None:intergenic
AGCTCAAAGATTCTTCCATG+AGG	0.640457	7_3:+31858621	Msa1101220:CDS
TGACATTGGTGTAATTTGGT+GGG	0.643180	7_3:-31859464	None:intergenic
AAATGGTGCAAGGCCAAACA+GGG	0.643288	7_3:+31858397	Msa1101220:CDS
GTGGCATCATTGCCATGTGG+AGG	0.648100	7_3:+31858467	Msa1101220:CDS
CCAGCTTTCAAACATAGATG+AGG	0.665846	7_3:+31859214	Msa1101220:CDS
TGGCACTGATAAGACCATAG+TGG	0.666772	7_3:+31858448	Msa1101220:CDS
TGGTCTGTGGGGTTCCCATG+TGG	0.676463	7_3:-31858015	None:intergenic
GGGTGGAACCTAAAACCTGG+TGG	0.747301	7_3:-31858043	None:intergenic
ATAGTGGCATCATTGCCATG+TGG	0.762428	7_3:+31858464	Msa1101220:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTCATAATCTTTTTTTTT+TGG	-	chr7_3:31859411-31859430	None:intergenic	10.0%
!!!	AAAAGTACATACATATATTT+TGG	-	chr7_3:31858229-31858248	None:intergenic	15.0%
!!!	ATTTTGATTTCTTGTAAATT+CGG	-	chr7_3:31858851-31858870	None:intergenic	15.0%
!!	ATTCCTAGAAAAAATTAAAA+TGG	-	chr7_3:31859551-31859570	None:intergenic	15.0%
!!!	TGAAGTTGATATTTATAAGT+TGG	+	chr7_3:31858141-31858160	Msa1101220:CDS	20.0%
!!	AAATTTATAGAATACAAACC+TGG	-	chr7_3:31858181-31858200	None:intergenic	20.0%
!!	AAATTTAATAATGTGTGATG+TGG	+	chr7_3:31858269-31858288	Msa1101220:intron	20.0%
!!!	ACTTAATTTTTGTGGTATTT+TGG	-	chr7_3:31859384-31859403	None:intergenic	20.0%
!!	AAAATACCACAAAAATTAAG+TGG	+	chr7_3:31859383-31859402	Msa1101220:three_prime_UTR	20.0%
!!!	TGTCCATTTTAATTTTTTCT+AGG	+	chr7_3:31859545-31859564	Msa1101220:three_prime_UTR	20.0%
!!!	TAATTTTTTCTAGGAATTGA+AGG	+	chr7_3:31859554-31859573	Msa1101220:three_prime_UTR	20.0%
!!!	GATATTTTTCATTCTTTTCA+TGG	+	chr7_3:31859776-31859795	Msa1101220:three_prime_UTR	20.0%
!!	AACATTTTTCTAATACCACA+TGG	+	chr7_3:31858000-31858019	Msa1101220:exon	25.0%
!!	ACATTTTTCTAATACCACAT+GGG	+	chr7_3:31858001-31858020	Msa1101220:exon	25.0%
!!	ATATTTATAAGTTGGATCCA+TGG	+	chr7_3:31858149-31858168	Msa1101220:CDS	25.0%
!!	TATTTATAAGTTGGATCCAT+GGG	+	chr7_3:31858150-31858169	Msa1101220:CDS	25.0%
!!!	AATTTACTTTTGGTTTGTTG+TGG	+	chr7_3:31858298-31858317	Msa1101220:intron	25.0%
!	TCTTAGACTAATGTTATTCT+TGG	+	chr7_3:31858786-31858805	Msa1101220:intron	25.0%
!	AACTCAAGTATTTCTTTGAT+GGG	-	chr7_3:31859250-31859269	None:intergenic	25.0%
!!!	ATGAATCAACAATTGCTTTT+AGG	+	chr7_3:31859332-31859351	Msa1101220:CDS	25.0%
!!	TAAGTAAGATTTCTAGAAGT+TGG	+	chr7_3:31859440-31859459	Msa1101220:three_prime_UTR	25.0%
!	ATTTATTCAGTCTTCAACTA+AGG	-	chr7_3:31859617-31859636	None:intergenic	25.0%
!!!	TTAATTTGTTTGTGTGTTGT+TGG	+	chr7_3:31859694-31859713	Msa1101220:three_prime_UTR	25.0%
!!!	TAATTTGTTTGTGTGTTGTT+GGG	+	chr7_3:31859695-31859714	Msa1101220:three_prime_UTR	25.0%
!!	TAGATAAGTATTGTACTGAT+TGG	+	chr7_3:31859750-31859769	Msa1101220:three_prime_UTR	25.0%
!!!	AGATAAGTATTGTACTGATT+GGG	+	chr7_3:31859751-31859770	Msa1101220:three_prime_UTR	25.0%
!!	TTTCATTCTTTTCATGGAAA+AGG	+	chr7_3:31859782-31859801	Msa1101220:three_prime_UTR	25.0%
!	TAGAAAAATGTTGAGGTGTT+TGG	-	chr7_3:31857992-31858011	None:intergenic	30.0%
	GTGGTATTAGAAAAATGTTG+AGG	-	chr7_3:31857999-31858018	None:intergenic	30.0%
	AATATCAACTTCAGCAATGA+TGG	-	chr7_3:31858134-31858153	None:intergenic	30.0%
	TTAATAATGTGTGATGTGGA+AGG	+	chr7_3:31858273-31858292	Msa1101220:intron	30.0%
!	GTGGAAGGTTAATTTACTTT+TGG	+	chr7_3:31858288-31858307	Msa1101220:intron	30.0%
!	TTTTCAGCTAAAGCTTCATT+TGG	+	chr7_3:31858329-31858348	Msa1101220:intron	30.0%
!!	GAACATTATTGGTGTCAAAA+AGG	+	chr7_3:31858505-31858524	Msa1101220:CDS	30.0%
!!!	AAGGCTCTTGTTTTTTACAA+AGG	+	chr7_3:31858524-31858543	Msa1101220:CDS	30.0%
!!	CAATTAGTCTTAATACCCTT+TGG	-	chr7_3:31858557-31858576	None:intergenic	30.0%
!!	CAAAGGGTATTAAGACTAAT+TGG	+	chr7_3:31858555-31858574	Msa1101220:CDS	30.0%
	GAAGAATCTTTGAGCTTAAT+AGG	-	chr7_3:31858617-31858636	None:intergenic	30.0%
	AATTATTGTGTTTGTGCAGT+TGG	+	chr7_3:31858809-31858828	Msa1101220:intron	30.0%
	AACAGAATCATCAGAAACTA+TGG	+	chr7_3:31858884-31858903	Msa1101220:CDS	30.0%
!!!	GTTTTTGGTGATTGGAAAAA+GGG	-	chr7_3:31858952-31858971	None:intergenic	30.0%
!!!	TGTTTTTGGTGATTGGAAAA+AGG	-	chr7_3:31858953-31858972	None:intergenic	30.0%
	AGCATCTAATAGGTTTGAAA+AGG	-	chr7_3:31859021-31859040	None:intergenic	30.0%
	TTCAAACCTATTAGATGCTA+TGG	+	chr7_3:31859022-31859041	Msa1101220:CDS	30.0%
!!	ATTGTTGCTAGTGTTGATTT+GGG	-	chr7_3:31859153-31859172	None:intergenic	30.0%
!!	AATTGTTGCTAGTGTTGATT+TGG	-	chr7_3:31859154-31859173	None:intergenic	30.0%
	GAACTCAAGTATTTCTTTGA+TGG	-	chr7_3:31859251-31859270	None:intergenic	30.0%
	CATACTGTGAATTGATGTTA+GGG	-	chr7_3:31859286-31859305	None:intergenic	30.0%
	TCATACTGTGAATTGATGTT+AGG	-	chr7_3:31859287-31859306	None:intergenic	30.0%
	TCATCAAAGATTGCTTCATA+AGG	-	chr7_3:31859316-31859335	None:intergenic	30.0%
	ATGATGACATTGGTGTAATT+TGG	-	chr7_3:31859471-31859490	None:intergenic	30.0%
	ACCAATGTCATCATTAAGTA+AGG	+	chr7_3:31859477-31859496	Msa1101220:three_prime_UTR	30.0%
	TCCTTACTTAATGATGACAT+TGG	-	chr7_3:31859481-31859500	None:intergenic	30.0%
!!	TTTTTCTAGGAATTGAAGGA+AGG	+	chr7_3:31859558-31859577	Msa1101220:three_prime_UTR	30.0%
!!	TTTTCTAGGAATTGAAGGAA+GGG	+	chr7_3:31859559-31859578	Msa1101220:three_prime_UTR	30.0%
!!	TGTACACTACTATTTCTGAT+AGG	-	chr7_3:31859669-31859688	None:intergenic	30.0%
!	AATTTGTTTGTGTGTTGTTG+GGG	+	chr7_3:31859696-31859715	Msa1101220:three_prime_UTR	30.0%
	AGAGAGACAAAAACCAAACT+TGG	-	chr7_3:31857948-31857967	None:intergenic	35.0%
	AACTCATTCTTCACTACCTT+AGG	+	chr7_3:31858077-31858096	Msa1101220:CDS	35.0%
!!!	TGGAGGCAATTTTTTTCCTA+AGG	-	chr7_3:31858096-31858115	None:intergenic	35.0%
	TTTGGGTACTTTCTATCTCT+AGG	-	chr7_3:31858380-31858399	None:intergenic	35.0%
!!	AGAGATAGAAAGTACCCAAA+TGG	+	chr7_3:31858380-31858399	Msa1101220:CDS	35.0%
	AGATCACAGGAGAACATTAT+TGG	+	chr7_3:31858494-31858513	Msa1101220:CDS	35.0%
	TTACAAAGGAAAACCTCCAA+AGG	+	chr7_3:31858538-31858557	Msa1101220:CDS	35.0%
	TACAAAGGAAAACCTCCAAA+GGG	+	chr7_3:31858539-31858558	Msa1101220:CDS	35.0%
!!	TTAGTCTTAATACCCTTTGG+AGG	-	chr7_3:31858554-31858573	None:intergenic	35.0%
	GAATCATCAGAAACTATGGT+TGG	+	chr7_3:31858888-31858907	Msa1101220:CDS	35.0%
	TGATTGGAAAAAGGGTTTCT+TGG	-	chr7_3:31858944-31858963	None:intergenic	35.0%
!!!	GATGTTGTGTTTTTGGTGAT+TGG	-	chr7_3:31858960-31858979	None:intergenic	35.0%
!	AAGAGGTGATGTTGTGTTTT+TGG	-	chr7_3:31858967-31858986	None:intergenic	35.0%
	AGTAGTCCATAGCATCTAAT+AGG	-	chr7_3:31859031-31859050	None:intergenic	35.0%
!	AACTTGTTCCAATTCCTGAT+GGG	-	chr7_3:31859091-31859110	None:intergenic	35.0%
!!	TGCTTTAAAGTGTTGGATTG+AGG	-	chr7_3:31859194-31859213	None:intergenic	35.0%
!!	TAGCCTTGATATTGATGATG+AGG	-	chr7_3:31859359-31859378	None:intergenic	35.0%
!!!	TTGGTGCCACTTAATTTTTG+TGG	-	chr7_3:31859392-31859411	None:intergenic	35.0%
	TGACATTGGTGTAATTTGGT+GGG	-	chr7_3:31859467-31859486	None:intergenic	35.0%
	ATGACATTGGTGTAATTTGG+TGG	-	chr7_3:31859468-31859487	None:intergenic	35.0%
!!	CTTTTGACTCCATACCAAAT+AGG	-	chr7_3:31859591-31859610	None:intergenic	35.0%
	TGTATGCTTCACACCAAGTT+TGG	+	chr7_3:31857932-31857951	Msa1101220:five_prime_UTR	40.0%
	GAATGAGTTCTGCATCAGTA+GGG	-	chr7_3:31858066-31858085	None:intergenic	40.0%
	AGAATGAGTTCTGCATCAGT+AGG	-	chr7_3:31858067-31858086	None:intergenic	40.0%
!	ACTTCAGCAATGATGGAAAC+AGG	-	chr7_3:31858127-31858146	None:intergenic	40.0%
	TACAAACCTGGTAAATCCCA+TGG	-	chr7_3:31858169-31858188	None:intergenic	40.0%
	CTTCATTTGGCGAGAAAGAA+TGG	+	chr7_3:31858342-31858361	Msa1101220:CDS	40.0%
	AGCTCAAAGATTCTTCCATG+AGG	+	chr7_3:31858621-31858640	Msa1101220:CDS	40.0%
	GCTCAAAGATTCTTCCATGA+GGG	+	chr7_3:31858622-31858641	Msa1101220:CDS	40.0%
	ATGAGGGTGAGTTTAGATTG+CGG	+	chr7_3:31858638-31858657	Msa1101220:intron	40.0%
	TTGATGTCTTTGTTCGACTG+TGG	-	chr7_3:31858711-31858730	None:intergenic	40.0%
	TTGATGTAGTTGTTCGACTG+TGG	+	chr7_3:31858742-31858761	Msa1101220:intron	40.0%
	TGTTTGTGCAGTTGGATGAT+TGG	+	chr7_3:31858817-31858836	Msa1101220:intron	40.0%
	GTTTGTGCAGTTGGATGATT+GGG	+	chr7_3:31858818-31858837	Msa1101220:intron	40.0%
!!	AGAAACTATGGTTGGTGAAG+TGG	+	chr7_3:31858896-31858915	Msa1101220:CDS	40.0%
!!!	GACATGAGTGTGTTTTGAAG+AGG	-	chr7_3:31858984-31859003	None:intergenic	40.0%
	AGATAAGAAGCTGCTCAACA+TGG	-	chr7_3:31859054-31859073	None:intergenic	40.0%
	GAAAATTCCAACAACCCATC+AGG	+	chr7_3:31859074-31859093	Msa1101220:CDS	40.0%
!	GAACTTGTTCCAATTCCTGA+TGG	-	chr7_3:31859092-31859111	None:intergenic	40.0%
	TCAGGAATTGGAACAAGTTC+AGG	+	chr7_3:31859092-31859111	Msa1101220:CDS	40.0%
!!	AAGCTGGTGCTTTAAAGTGT+TGG	-	chr7_3:31859201-31859220	None:intergenic	40.0%
	CCTCATCTATGTTTGAAAGC+TGG	-	chr7_3:31859217-31859236	None:intergenic	40.0%
	CCAGCTTTCAAACATAGATG+AGG	+	chr7_3:31859214-31859233	Msa1101220:CDS	40.0%
	GATGTTAGGGAAATTGCAAG+AGG	-	chr7_3:31859273-31859292	None:intergenic	40.0%
	GGTCCTCATCATCAATATCA+AGG	+	chr7_3:31859353-31859372	Msa1101220:CDS	40.0%
	TAGGAATTGAAGGAAGGGTT+AGG	+	chr7_3:31859564-31859583	Msa1101220:three_prime_UTR	40.0%
	CCTAAAACCTGGTGGCAAAT+TGG	-	chr7_3:31858038-31858057	None:intergenic	45.0%
!	CCAATTTGCCACCAGGTTTT+AGG	+	chr7_3:31858035-31858054	Msa1101220:CDS	45.0%
!	GCAATGATGGAAACAGGCAA+GGG	-	chr7_3:31858121-31858140	None:intergenic	45.0%
!	AGCAATGATGGAAACAGGCA+AGG	-	chr7_3:31858122-31858141	None:intergenic	45.0%
	TTGGATCCATGGGATTTACC+AGG	+	chr7_3:31858160-31858179	Msa1101220:CDS	45.0%
!!	GAAAGTACCCAAATGGTGCA+AGG	+	chr7_3:31858387-31858406	Msa1101220:CDS	45.0%
!!	TGTTTGGCCTTGCACCATTT+GGG	-	chr7_3:31858397-31858416	None:intergenic	45.0%
	AAATGGTGCAAGGCCAAACA+GGG	+	chr7_3:31858397-31858416	Msa1101220:CDS	45.0%
!!	TATGGTCTTATCAGTGCCAG+TGG	-	chr7_3:31858447-31858466	None:intergenic	45.0%
!!	TGGCACTGATAAGACCATAG+TGG	+	chr7_3:31858448-31858467	Msa1101220:CDS	45.0%
	ACATGGCAATGATGCCACTA+TGG	-	chr7_3:31858465-31858484	None:intergenic	45.0%
	ATAGTGGCATCATTGCCATG+TGG	+	chr7_3:31858464-31858483	Msa1101220:CDS	45.0%
	GCAATCTAAACTCACCCTCA+TGG	-	chr7_3:31858639-31858658	None:intergenic	45.0%
	TCCAACAACCCATCAGGAAT+TGG	+	chr7_3:31859080-31859099	Msa1101220:CDS	45.0%
!!	TCCAATTCCTGATGGGTTGT+TGG	-	chr7_3:31859084-31859103	None:intergenic	45.0%
	AGGAAGGGTTAGGACCTATT+TGG	+	chr7_3:31859574-31859593	Msa1101220:three_prime_UTR	45.0%
	GGGTTAGGACCTATTTGGTA+TGG	+	chr7_3:31859579-31859598	Msa1101220:three_prime_UTR	45.0%
!	TGTTTGTGTGTTGTTGGGGT+TGG	+	chr7_3:31859700-31859719	Msa1101220:three_prime_UTR	45.0%
!!	TTCTATAAATTTAAATTTAA+AGG	+	chr7_3:31858189-31858208	Msa1101220:intron	5.0%
!	TGGTGGCAAATTGGTCTGTG+GGG	-	chr7_3:31858029-31858048	None:intergenic	50.0%
!	CTGGTGGCAAATTGGTCTGT+GGG	-	chr7_3:31858030-31858049	None:intergenic	50.0%
	GTAGGGTGGAACCTAAAACC+TGG	-	chr7_3:31858049-31858068	None:intergenic	50.0%
	TGAGTTCTGCATCAGTAGGG+TGG	-	chr7_3:31858063-31858082	None:intergenic	50.0%
	GATGGAAACAGGCAAGGGAA+TGG	-	chr7_3:31858116-31858135	None:intergenic	50.0%
!!	CTGTTTGGCCTTGCACCATT+TGG	-	chr7_3:31858398-31858417	None:intergenic	50.0%
	CAAATGGTGCAAGGCCAAAC+AGG	+	chr7_3:31858396-31858415	Msa1101220:CDS	50.0%
!!	TCAGGGTATTGGAAAGCCAC+TGG	+	chr7_3:31858428-31858447	Msa1101220:CDS	50.0%
	TGTGATCTTCCTCCTCCACA+TGG	-	chr7_3:31858482-31858501	None:intergenic	50.0%
	ATGTGGAGGAGGAAGATCAC+AGG	+	chr7_3:31858481-31858500	Msa1101220:CDS	50.0%
	GTTCGACTGTGGCAAGACTA+TGG	-	chr7_3:31858700-31858719	None:intergenic	50.0%
!	CCTGGTGGCAAATTGGTCTG+TGG	-	chr7_3:31858031-31858050	None:intergenic	55.0%
	CCACAGACCAATTTGCCACC+AGG	+	chr7_3:31858028-31858047	Msa1101220:CDS	55.0%
	GGGTGGAACCTAAAACCTGG+TGG	-	chr7_3:31858046-31858065	None:intergenic	55.0%
	GGAAACAGGCAAGGGAATGG+AGG	-	chr7_3:31858113-31858132	None:intergenic	55.0%
	CAAACAGGGCAGCTGCTTCA+GGG	+	chr7_3:31858411-31858430	Msa1101220:CDS	55.0%
	GTGGCATCATTGCCATGTGG+AGG	+	chr7_3:31858467-31858486	Msa1101220:CDS	55.0%
	GCATCATTGCCATGTGGAGG+AGG	+	chr7_3:31858470-31858489	Msa1101220:CDS	55.0%
	TGGTCTGTGGGGTTCCCATG+TGG	-	chr7_3:31858018-31858037	None:intergenic	60.0%
	CCTGAAGCAGCTGCCCTGTT+TGG	-	chr7_3:31858413-31858432	None:intergenic	60.0%
	CCAAACAGGGCAGCTGCTTC+AGG	+	chr7_3:31858410-31858429	Msa1101220:CDS	60.0%
	GGGCAGCTGCTTCAGGGTAT+TGG	+	chr7_3:31858417-31858436	Msa1101220:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	31857931	31859821	31857931	ID=Msa1101220;Name=Msa1101220
chr7_3	mRNA	31857931	31859821	31857931	ID=Msa1101220-mRNA-1;Parent=Msa1101220;Name=Msa1101220-mRNA-1;_AED=0.03;_eAED=0.03;_QI=88\|1\|1\|1\|1\|1\|3\|442\|340
chr7_3	exon	31857931	31858181	31857931	ID=Msa1101220-mRNA-1:exon:6821;Parent=Msa1101220-mRNA-1
chr7_3	exon	31858336	31858643	31858336	ID=Msa1101220-mRNA-1:exon:6822;Parent=Msa1101220-mRNA-1
chr7_3	exon	31858828	31859821	31858828	ID=Msa1101220-mRNA-1:exon:6823;Parent=Msa1101220-mRNA-1
chr7_3	five_prime_UTR	31857931	31858018	31857931	ID=Msa1101220-mRNA-1:five_prime_utr;Parent=Msa1101220-mRNA-1
chr7_3	CDS	31858019	31858181	31858019	ID=Msa1101220-mRNA-1:cds;Parent=Msa1101220-mRNA-1
chr7_3	CDS	31858336	31858643	31858336	ID=Msa1101220-mRNA-1:cds;Parent=Msa1101220-mRNA-1
chr7_3	CDS	31858828	31859379	31858828	ID=Msa1101220-mRNA-1:cds;Parent=Msa1101220-mRNA-1
chr7_3	three_prime_UTR	31859380	31859821	31859380	ID=Msa1101220-mRNA-1:three_prime_utr;Parent=Msa1101220-mRNA-1

Gene Sequence

>Msa1101220

ATGGGAACCCCACAGACCAATTTGCCACCAGGTTTTAGGTTCCACCCTACTGATGCAGAACTCATTCTTCACTACCTTAGGAAAAAAATTGCCTCCATTCCCTTGCCTGTTTCCATCATTGCTGAAGTTGATATTTATAAGTTGGATCCATGGGATTTACCAGCTAAAGCTTCATTTGGCGAGAAAGAATGGTACTTTTTTAGTCCTAGAGATAGAAAGTACCCAAATGGTGCAAGGCCAAACAGGGCAGCTGCTTCAGGGTATTGGAAAGCCACTGGCACTGATAAGACCATAGTGGCATCATTGCCATGTGGAGGAGGAAGATCACAGGAGAACATTATTGGTGTCAAAAAGGCTCTTGTTTTTTACAAAGGAAAACCTCCAAAGGGTATTAAGACTAATTGGATCATGCATGAATATCGTCTTGTTGACAACAATAAACCTATTAAGCTCAAAGATTCTTCCATGAGGTTGGATGATTGGGTGCTATGCCGAATTTACAAGAAATCAAAATGTGCACTAACTTCAACAGAATCATCAGAAACTATGGTTGGTGAAGTGGAACATGCAGAAGAGACACAATTCCAAGAAACCCTTTTTCCAATCACCAAAAACACAACATCACCTCTTCAAAACACACTCATGTCTCAAAAATCAGTGTCCTTTTCAAACCTATTAGATGCTATGGACTACTCCATGTTGAGCAGCTTCTTATCTGAAAATTCCAACAACCCATCAGGAATTGGAACAAGTTCAGGTTTCAACACTGAAAATTTTAATCAACAACAATCTTCCCAAATCAACACTAGCAACAATTACATGTCTCAAAAGAATCCTCAATCCAACACTTTAAAGCACCAGCTTTCAAACATAGATGAGGAAATGTTATACCCATCAAAGAAATACTTGAGTTCCTCTTGCAATTTCCCTAACATCAATTCACAGTATGAAAACTACCTTATGAAGCAATCTTTGATGAATCAACAATTGCTTTTAGGTCCTCATCATCAATATCAAGGCTAA

Protein sequence

>Msa1101220

MGTPQTNLPPGFRFHPTDAELILHYLRKKIASIPLPVSIIAEVDIYKLDPWDLPAKASFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVASLPCGGGRSQENIIGVKKALVFYKGKPPKGIKTNWIMHEYRLVDNNKPIKLKDSSMRLDDWVLCRIYKKSKCALTSTESSETMVGEVEHAEETQFQETLFPITKNTTSPLQNTLMSQKSVSFSNLLDAMDYSMLSSFLSENSNNPSGIGTSSGFNTENFNQQQSSQINTSNNYMSQKNPQSNTLKHQLSNIDEEMLYPSKKYLSSSCNFPNINSQYENYLMKQSLMNQQLLLGPHHQYQG*