Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179670 | XP_003592402.1 | 95.652 | 414 | 8 | 3 | 1 | 413 | 1 | 405 | 0.0 | 801 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179670 | sp|Q55CU8|PITC_DICDI | 28.571 | 210 | 145 | 4 | 2 | 207 | 35 | 243 | 2.21e-17 | 86.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179670 | G7ID63 | 95.652 | 414 | 8 | 3 | 1 | 413 | 1 | 405 | 0.0 | 801 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0069350 | Msa0179670 | 0.807506 | 4.889123e-50 | -8.615850e-47 |
| Msa0134930 | Msa0179670 | 0.811818 | 5.788213e-51 | -8.615850e-47 |
| Msa0179670 | Msa0420680 | 0.813076 | 3.073525e-51 | -8.615850e-47 |
| Msa0179670 | Msa0512520 | 0.801170 | 1.021608e-48 | -8.615850e-47 |
| Msa0179670 | Msa0557850 | 0.809233 | 2.093553e-50 | -8.615850e-47 |
| Msa0179670 | Msa1046120 | 0.810122 | 1.348470e-50 | -8.615850e-47 |
| Msa0179670 | Msa1091050 | 0.823017 | 1.736614e-53 | -8.615850e-47 |
| Msa0179670 | Msa1133970 | 0.819698 | 1.012884e-52 | -8.615850e-47 |
| Msa0179670 | Msa1134040 | 0.821240 | 4.485198e-53 | -8.615850e-47 |
| Msa0179670 | Msa1160780 | 0.829690 | 4.470892e-55 | -8.615850e-47 |
| Msa0179670 | Msa1255220 | 0.801466 | 8.887017e-49 | -8.615850e-47 |
| Msa0179670 | Msa1341750 | 0.812395 | 4.331903e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179670 | MtrunA17_Chr1g0205531 | 95.652 | 414 | 8 | 3 | 1 | 413 | 1 | 405 | 0.0 | 801 |
| Msa0179670 | MtrunA17_Chr3g0131581 | 30.198 | 202 | 127 | 4 | 12 | 208 | 44 | 236 | 8.39e-22 | 94.4 |
| Msa0179670 | MtrunA17_Chr1g0155071 | 29.798 | 198 | 132 | 4 | 9 | 203 | 13 | 206 | 1.69e-20 | 91.3 |
| Msa0179670 | MtrunA17_Chr8g0385691 | 27.778 | 198 | 137 | 3 | 12 | 208 | 24 | 216 | 5.56e-20 | 89.0 |
| Msa0179670 | MtrunA17_Chr8g0385681 | 26.471 | 204 | 144 | 3 | 6 | 208 | 21 | 219 | 2.77e-19 | 87.0 |
| Msa0179670 | MtrunA17_Chr3g0115591 | 28.856 | 201 | 136 | 3 | 8 | 207 | 21 | 215 | 6.45e-19 | 87.0 |
| Msa0179670 | MtrunA17_Chr5g0425421 | 27.586 | 203 | 138 | 4 | 7 | 207 | 17 | 212 | 1.78e-18 | 85.9 |
| Msa0179670 | MtrunA17_Chr7g0254621 | 29.570 | 186 | 127 | 2 | 19 | 203 | 24 | 206 | 1.12e-17 | 83.6 |
| Msa0179670 | MtrunA17_Chr8g0373391 | 27.273 | 198 | 125 | 5 | 19 | 207 | 23 | 210 | 7.37e-15 | 74.7 |
| Msa0179670 | MtrunA17_Chr4g0058811 | 25.478 | 157 | 115 | 2 | 45 | 200 | 77 | 232 | 2.64e-11 | 63.5 |
| Msa0179670 | MtrunA17_Chr4g0058791 | 24.405 | 168 | 125 | 2 | 42 | 208 | 72 | 238 | 4.63e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179670 | AT1G05370.1 | 63.023 | 430 | 129 | 11 | 1 | 413 | 1 | 417 | 2.12e-177 | 501 |
| Msa0179670 | AT3G22410.1 | 60.714 | 420 | 138 | 13 | 1 | 413 | 1 | 400 | 7.00e-164 | 466 |
| Msa0179670 | AT4G08690.2 | 31.795 | 195 | 126 | 3 | 10 | 203 | 17 | 205 | 2.09e-22 | 97.1 |
| Msa0179670 | AT4G08690.1 | 31.795 | 195 | 126 | 3 | 10 | 203 | 17 | 205 | 2.09e-22 | 97.1 |
| Msa0179670 | AT4G08690.3 | 31.795 | 195 | 126 | 3 | 10 | 203 | 17 | 205 | 2.09e-22 | 97.1 |
| Msa0179670 | AT1G75170.2 | 33.005 | 203 | 128 | 5 | 9 | 207 | 13 | 211 | 2.16e-22 | 97.1 |
| Msa0179670 | AT1G75170.1 | 33.005 | 203 | 128 | 5 | 9 | 207 | 13 | 211 | 2.16e-22 | 97.1 |
| Msa0179670 | AT1G22180.2 | 31.492 | 181 | 120 | 2 | 28 | 207 | 35 | 212 | 2.49e-22 | 97.1 |
| Msa0179670 | AT1G22180.4 | 31.492 | 181 | 120 | 2 | 28 | 207 | 35 | 212 | 2.49e-22 | 97.1 |
| Msa0179670 | AT1G01630.1 | 25.962 | 208 | 147 | 4 | 3 | 208 | 17 | 219 | 2.88e-17 | 81.6 |
| Msa0179670 | AT4G36640.1 | 29.208 | 202 | 138 | 4 | 8 | 207 | 10 | 208 | 2.92e-16 | 79.3 |
| Msa0179670 | AT4G36640.3 | 29.208 | 202 | 138 | 4 | 8 | 207 | 10 | 208 | 2.92e-16 | 79.3 |
| Msa0179670 | AT1G22180.3 | 28.859 | 149 | 102 | 2 | 60 | 207 | 2 | 147 | 4.52e-13 | 69.3 |
| Msa0179670 | AT1G22180.1 | 28.859 | 149 | 102 | 2 | 60 | 207 | 2 | 147 | 4.52e-13 | 69.3 |
| Msa0179670 | AT5G63060.1 | 28.025 | 157 | 111 | 2 | 45 | 200 | 78 | 233 | 2.74e-12 | 67.0 |
| Msa0179670 | AT5G63060.2 | 28.025 | 157 | 111 | 2 | 45 | 200 | 43 | 198 | 5.11e-12 | 65.9 |
Find 122 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCATTCATATGATATTTA+AGG | 0.120240 | 1_4:+67259209 | Msa0179670:five_prime_UTR |
| CTCTCTCTCTGCTGAGTTAT+TGG | 0.149617 | 1_4:+67259174 | Msa0179670:five_prime_UTR |
| CCCAGTGGGTTACGTGCTAT+TGG | 0.252974 | 1_4:-67262975 | None:intergenic |
| ACACGAGTGTACTTGAAAAT+TGG | 0.259531 | 1_4:-67263495 | None:intergenic |
| AACTAAGAGCTTGTCTTTCA+TGG | 0.260163 | 1_4:+67259573 | Msa0179670:CDS |
| AAATATCATATGAATGAATA+AGG | 0.260705 | 1_4:-67259205 | None:intergenic |
| TGTGTGTATGCTTGGTAATT+TGG | 0.270416 | 1_4:+67263515 | Msa0179670:three_prime_UTR |
| TAGCAGTTTCCTTGTCTTTG+AGG | 0.282102 | 1_4:-67259336 | None:intergenic |
| AAGGTTCTTCACTCGTTTAT+TGG | 0.290731 | 1_4:+67260376 | Msa0179670:intron |
| CCAGTGGGTTACGTGCTATT+GGG | 0.316343 | 1_4:-67262974 | None:intergenic |
| CCATTGATGGTTCGAAATCT+AGG | 0.348472 | 1_4:-67262692 | None:intergenic |
| AGGGATGATGCTGCTGGGGA+GGG | 0.352053 | 1_4:-67262915 | None:intergenic |
| AATAATAATAATATATGTAC+TGG | 0.354287 | 1_4:-67263390 | None:intergenic |
| TGGAGAGAAAGTATTGTTAC+TGG | 0.364087 | 1_4:+67259593 | Msa0179670:CDS |
| TGCTGCTGGGGAGGGGCTAG+TGG | 0.364455 | 1_4:-67262907 | None:intergenic |
| TGATGAATCCAGACCTGTTT+TGG | 0.373995 | 1_4:+67260045 | Msa0179670:CDS |
| ATAATAAAACTTACCAAAAC+AGG | 0.377861 | 1_4:-67260058 | None:intergenic |
| CGTATGATGAAATGGTTTAT+AGG | 0.382044 | 1_4:+67263186 | Msa0179670:CDS |
| TGCTGGCTGGTGGGCCCAGT+GGG | 0.383306 | 1_4:-67262989 | None:intergenic |
| CGTATGTGAAATTCTATAGA+AGG | 0.391586 | 1_4:+67263162 | Msa0179670:CDS |
| CTCTGCGGCAGTGGTGTTGA+AGG | 0.404669 | 1_4:-67263026 | None:intergenic |
| AAGTCGTTGTAGTCCATTGA+TGG | 0.407526 | 1_4:-67262705 | None:intergenic |
| AACCCCTCTCACTGTCAAAC+AGG | 0.415234 | 1_4:+67259393 | Msa0179670:CDS |
| TGGAATAATAGTTCTCTTGT+TGG | 0.416521 | 1_4:+67259250 | Msa0179670:five_prime_UTR |
| ATCTGAAGGGTTGGCTTATG+TGG | 0.418745 | 1_4:+67260012 | Msa0179670:CDS |
| AACCCCTTCCTGCTGGCTGG+TGG | 0.418815 | 1_4:-67262999 | None:intergenic |
| TATCATATCATATCATGAAT+TGG | 0.420109 | 1_4:+67263442 | Msa0179670:three_prime_UTR |
| TGGATTTATGAACTTGTTGT+TGG | 0.425772 | 1_4:+67261062 | Msa0179670:CDS |
| ATCTGAGGGATGAGGCTCTT+GGG | 0.427015 | 1_4:-67262737 | None:intergenic |
| AAGGGATGATGCTGCTGGGG+AGG | 0.428497 | 1_4:-67262916 | None:intergenic |
| GCTGCTGGGGAGGGGCTAGT+GGG | 0.439448 | 1_4:-67262906 | None:intergenic |
| AACAACCCCTTCCTGCTGGC+TGG | 0.440949 | 1_4:-67263002 | None:intergenic |
| ACCCCTTCCTGCTGGCTGGT+GGG | 0.442147 | 1_4:-67262998 | None:intergenic |
| GGCCCACCAGCCAGCAGGAA+GGG | 0.443514 | 1_4:+67262996 | Msa0179670:CDS |
| AACGCTTTGCTTAACCGTCC+TGG | 0.446636 | 1_4:-67261114 | None:intergenic |
| AGCGAGCGTTGAGTGGTGTA+AGG | 0.447735 | 1_4:-67262935 | None:intergenic |
| TAGAAGGGCGTATGATGAAA+TGG | 0.454431 | 1_4:+67263178 | Msa0179670:CDS |
| CCTAGATTTCGAACCATCAA+TGG | 0.454461 | 1_4:+67262692 | Msa0179670:CDS |
| CTAAAATCAACGGCCAAGAT+TGG | 0.455841 | 1_4:+67262774 | Msa0179670:CDS |
| GGGGCTAGTGGGTCCCACTT+TGG | 0.457789 | 1_4:-67262895 | None:intergenic |
| CCCAATAGCACGTAACCCAC+TGG | 0.463759 | 1_4:+67262974 | Msa0179670:CDS |
| GGATGAGCATGAACCAATCT+TGG | 0.477387 | 1_4:-67262787 | None:intergenic |
| GCTGTCACTCTCTGCGGCAG+TGG | 0.479497 | 1_4:-67263035 | None:intergenic |
| GAAGGGTTGGCTTATGTGGC+TGG | 0.480517 | 1_4:+67260016 | Msa0179670:CDS |
| AAAACTTACCAAAACAGGTC+TGG | 0.482409 | 1_4:-67260053 | None:intergenic |
| GGATTTATGAACTTGTTGTT+GGG | 0.483181 | 1_4:+67261063 | Msa0179670:CDS |
| AATCTGAGGGATGAGGCTCT+TGG | 0.483672 | 1_4:-67262738 | None:intergenic |
| ATTGTGGGTGAGTACTATCC+AGG | 0.486719 | 1_4:+67261096 | Msa0179670:CDS |
| CACTGGGCCCACCAGCCAGC+AGG | 0.490128 | 1_4:+67262991 | Msa0179670:CDS |
| TTGGGAGCATTGAAAATTGT+GGG | 0.494434 | 1_4:+67261081 | Msa0179670:CDS |
| CTGCTGGCTGGTGGGCCCAG+TGG | 0.496285 | 1_4:-67262990 | None:intergenic |
| GGTGTAAGGGATGATGCTGC+TGG | 0.502520 | 1_4:-67262921 | None:intergenic |
| GGCGTCGTTTCTTCAATCTC+CGG | 0.503298 | 1_4:+67263076 | Msa0179670:CDS |
| GTTGGGAGCATTGAAAATTG+TGG | 0.506561 | 1_4:+67261080 | Msa0179670:CDS |
| TTCTCAGCTGAATTATCTGA+AGG | 0.510130 | 1_4:+67259998 | Msa0179670:CDS |
| TGATTAGAAACGCTGAGAAA+CGG | 0.511572 | 1_4:-67263285 | None:intergenic |
| GTAACTATGCTTGTGTGAAA+CGG | 0.512111 | 1_4:+67259507 | Msa0179670:CDS |
| AGCTGAATTATCTGAAGGGT+TGG | 0.514458 | 1_4:+67260003 | Msa0179670:CDS |
| AGGGAACAACCCCTTCCTGC+TGG | 0.515575 | 1_4:-67263006 | None:intergenic |
| GGGATGATGCTGCTGGGGAG+GGG | 0.519871 | 1_4:-67262914 | None:intergenic |
| GCCCACCAGCCAGCAGGAAG+GGG | 0.520539 | 1_4:+67262997 | Msa0179670:CDS |
| ATTGGCTTTCACAATGGAGG+TGG | 0.523186 | 1_4:+67260394 | Msa0179670:CDS |
| TGTTGTCTCCTCCTAGGCTA+AGG | 0.531664 | 1_4:-67262863 | None:intergenic |
| CATTGATGGTTCGAAATCTA+GGG | 0.533344 | 1_4:-67262691 | None:intergenic |
| GATAATGTGAAGGTGGAAAG+AGG | 0.533969 | 1_4:+67263122 | Msa0179670:CDS |
| GTGTAAGGGATGATGCTGCT+GGG | 0.543625 | 1_4:-67262920 | None:intergenic |
| TACACTCGTGTGTGTATGCT+TGG | 0.545944 | 1_4:+67263507 | Msa0179670:three_prime_UTR |
| TCGTTTATTGGCTTTCACAA+TGG | 0.546938 | 1_4:+67260388 | Msa0179670:CDS |
| TGTAAGGGATGATGCTGCTG+GGG | 0.547217 | 1_4:-67262919 | None:intergenic |
| TGTACCTGTTTGACAGTGAG+AGG | 0.549753 | 1_4:-67259397 | None:intergenic |
| CAGTGGGTTACGTGCTATTG+GGG | 0.551075 | 1_4:-67262973 | None:intergenic |
| GAGGGATGAGGCTCTTGGGT+AGG | 0.552830 | 1_4:-67262733 | None:intergenic |
| GGGTTGATGGGTCGAATCTG+AGG | 0.558790 | 1_4:-67262752 | None:intergenic |
| TTTATTGGCTTTCACAATGG+AGG | 0.560338 | 1_4:+67260391 | Msa0179670:CDS |
| ATGATGTGTTGTCTCCTCCT+AGG | 0.560395 | 1_4:-67262869 | None:intergenic |
| GGTTGCGTGAAACAGAAGCT+TGG | 0.560446 | 1_4:+67259230 | Msa0179670:five_prime_UTR |
| GGGCCCACCAGCCAGCAGGA+AGG | 0.561599 | 1_4:+67262995 | Msa0179670:CDS |
| CCAATAGCACGTAACCCACT+GGG | 0.566549 | 1_4:+67262975 | Msa0179670:CDS |
| AGAGAGTGACAGCTCCTCAC+CGG | 0.572658 | 1_4:+67263045 | Msa0179670:CDS |
| TACCTGTTTGACAGTGAGAG+GGG | 0.572972 | 1_4:-67259395 | None:intergenic |
| CCATGGTACCTTAGCCTAGG+AGG | 0.577141 | 1_4:+67262855 | Msa0179670:CDS |
| AACTCGACTCACTCAAACCA+TGG | 0.579927 | 1_4:+67262838 | Msa0179670:CDS |
| AAACGGTTTCTGAAAGTGAA+AGG | 0.582881 | 1_4:+67259524 | Msa0179670:CDS |
| GAAACGACGCCGTTGTACTC+CGG | 0.585788 | 1_4:-67263064 | None:intergenic |
| ACGTGCTATTGGGGAAGCGA+AGG | 0.588647 | 1_4:-67262964 | None:intergenic |
| TAGAGACTAATCCACCAAGT+GGG | 0.588815 | 1_4:-67263223 | None:intergenic |
| TCTGATAGTCTTGTTTCATG+CGG | 0.591599 | 1_4:-67260226 | None:intergenic |
| TGATGAAGTTGAGTTGATTG+CGG | 0.591807 | 1_4:-67263330 | None:intergenic |
| TCTGCGGCAGTGGTGTTGAA+GGG | 0.591949 | 1_4:-67263025 | None:intergenic |
| GAGAGTGAGCGAGCGTTGAG+TGG | 0.592294 | 1_4:-67262942 | None:intergenic |
| GTACCTGTTTGACAGTGAGA+GGG | 0.593416 | 1_4:-67259396 | None:intergenic |
| CCTCCTAGGCTAAGGTACCA+TGG | 0.593699 | 1_4:-67262855 | None:intergenic |
| AGAGACTAATCCACCAAGTG+GGG | 0.606305 | 1_4:-67263222 | None:intergenic |
| CCCATCAACCCTAAAATCAA+CGG | 0.608077 | 1_4:+67262764 | Msa0179670:CDS |
| AAACCATGGTACCTTAGCCT+AGG | 0.608161 | 1_4:+67262852 | Msa0179670:CDS |
| TCTCAGCTGAATTATCTGAA+GGG | 0.608948 | 1_4:+67259999 | Msa0179670:CDS |
| TCACATTATCCCTATCCCGC+CGG | 0.611014 | 1_4:-67263109 | None:intergenic |
| CAACACATCATCGTCCAAAG+TGG | 0.611191 | 1_4:+67262881 | Msa0179670:CDS |
| GGTTGATGGGTCGAATCTGA+GGG | 0.612135 | 1_4:-67262751 | None:intergenic |
| ATGGTTTGAGTGAGTCGAGT+TGG | 0.618278 | 1_4:-67262836 | None:intergenic |
| GGATAGGGATAATGTGAAGG+TGG | 0.622484 | 1_4:+67263115 | Msa0179670:CDS |
| CATGTTGATAGCTCAACGAA+TGG | 0.624312 | 1_4:-67262651 | None:intergenic |
| GTATGTGAAATTCTATAGAA+GGG | 0.624349 | 1_4:+67263163 | Msa0179670:CDS |
| AACACATCATCGTCCAAAGT+GGG | 0.630292 | 1_4:+67262882 | Msa0179670:CDS |
| TGGGTCGAATCTGAGGGATG+AGG | 0.634099 | 1_4:-67262745 | None:intergenic |
| ATAATAATAATATATGTACT+GGG | 0.634142 | 1_4:-67263389 | None:intergenic |
| AAACGGAAAGGTGAGTGTGA+CGG | 0.648731 | 1_4:-67263268 | None:intergenic |
| GCGGGATAGGGATAATGTGA+AGG | 0.650440 | 1_4:+67263112 | Msa0179670:CDS |
| ACTTGAACTCCTCAAAGACA+AGG | 0.655023 | 1_4:+67259327 | Msa0179670:CDS |
| AGCTCCTCACCGGAGTACAA+CGG | 0.657216 | 1_4:+67263055 | Msa0179670:CDS |
| AGAAACGCTGAGAAACGGAA+AGG | 0.658877 | 1_4:-67263280 | None:intergenic |
| GCGAGCGTTGAGTGGTGTAA+GGG | 0.663009 | 1_4:-67262934 | None:intergenic |
| GAGACTAATCCACCAAGTGG+GGG | 0.677099 | 1_4:-67263221 | None:intergenic |
| AAGTTGAGTTGATTGCGGTG+TGG | 0.683057 | 1_4:-67263325 | None:intergenic |
| TGAGGAGCTGTCACTCTCTG+CGG | 0.688210 | 1_4:-67263041 | None:intergenic |
| TGGTTTATAGGTCAAAGATG+AGG | 0.693083 | 1_4:+67263198 | Msa0179670:CDS |
| GACGCCGTTGTACTCCGGTG+AGG | 0.706939 | 1_4:-67263059 | None:intergenic |
| ATAGAGACTAATCCACCAAG+TGG | 0.711384 | 1_4:-67263224 | None:intergenic |
| TGGGTGAGTACTATCCAGGA+CGG | 0.714746 | 1_4:+67261100 | Msa0179670:CDS |
| GACTGTGAAGGAGAAGCGTG+AGG | 0.721537 | 1_4:-67262808 | None:intergenic |
| GTGTGACGGCGTCTAAGATG+AGG | 0.729820 | 1_4:-67263254 | None:intergenic |
| GAGTTGGTGTGAGACTGTGA+AGG | 0.737605 | 1_4:-67262820 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATAAATTTTCAAAATAA+AGG | - | chr1_4:67260084-67260103 | None:intergenic | 10.0% |
| !!! | TAAGTAAAATTTTTTTTGTA+GGG | - | chr1_4:67262132-67262151 | None:intergenic | 10.0% |
| !!! | ATAAGTAAAATTTTTTTTGT+AGG | - | chr1_4:67262133-67262152 | None:intergenic | 10.0% |
| !! | TTCTTTCATAAATAAATTTA+GGG | - | chr1_4:67262590-67262609 | None:intergenic | 10.0% |
| !! | TTTCTTTCATAAATAAATTT+AGG | - | chr1_4:67262591-67262610 | None:intergenic | 10.0% |
| !! | TAAATTTATTTATGAAAGAA+AGG | + | chr1_4:67262590-67262609 | Msa0179670:intron | 10.0% |
| !! | ATAATAATAATATATGTACT+GGG | - | chr1_4:67263392-67263411 | None:intergenic | 10.0% |
| !! | AATAATAATAATATATGTAC+TGG | - | chr1_4:67263393-67263412 | None:intergenic | 10.0% |
| !! | AAATATCATATGAATGAATA+AGG | - | chr1_4:67259208-67259227 | None:intergenic | 15.0% |
| !! | ATTCATTCATATGATATTTA+AGG | + | chr1_4:67259209-67259228 | Msa0179670:five_prime_UTR | 15.0% |
| !!! | TAAAAAACTTTTCTAGTTAA+AGG | - | chr1_4:67259662-67259681 | None:intergenic | 15.0% |
| !!! | TTTTCCTTTTGTAATATTAA+AGG | + | chr1_4:67260357-67260376 | Msa0179670:intron | 15.0% |
| !!! | ATTAATAAAGTACTACTAAA+GGG | - | chr1_4:67260977-67260996 | None:intergenic | 15.0% |
| !!! | AATTAATAAAGTACTACTAA+AGG | - | chr1_4:67260978-67260997 | None:intergenic | 15.0% |
| !! | ATAATTGAATTGATAGATAT+AGG | - | chr1_4:67261810-67261829 | None:intergenic | 15.0% |
| !! | GTGATAGTTATTAAATTTAT+GGG | + | chr1_4:67262029-67262048 | Msa0179670:intron | 15.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | - | chr1_4:67262103-67262122 | None:intergenic | 15.0% |
| !!! | AAACAAAATTTATTTTAGCA+GGG | - | chr1_4:67262165-67262184 | None:intergenic | 15.0% |
| !!! | TAAACAAAATTTATTTTAGC+AGG | - | chr1_4:67262166-67262185 | None:intergenic | 15.0% |
| !!! | AATTTTTGCGATATTTTTTT+CGG | + | chr1_4:67262360-67262379 | Msa0179670:intron | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | + | chr1_4:67262444-67262463 | Msa0179670:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr1_4:67262516-67262535 | Msa0179670:intron | 15.0% |
| !!! | ACTTTTAAAGCTTAATTCAA+AGG | - | chr1_4:67259764-67259783 | None:intergenic | 20.0% |
| !! | AAAAGATATTATTCTTTGTG+GGG | - | chr1_4:67259861-67259880 | None:intergenic | 20.0% |
| !! | GAAAAGATATTATTCTTTGT+GGG | - | chr1_4:67259862-67259881 | None:intergenic | 20.0% |
| !! | AGAAAAGATATTATTCTTTG+TGG | - | chr1_4:67259863-67259882 | None:intergenic | 20.0% |
| !! | ATAATAAAACTTACCAAAAC+AGG | - | chr1_4:67260061-67260080 | None:intergenic | 20.0% |
| !!! | TTTATGTTTGTTTGATTTGA+AGG | + | chr1_4:67260096-67260115 | Msa0179670:intron | 20.0% |
| !!! | AATAACATAGTTTAGTTTCA+TGG | - | chr1_4:67260332-67260351 | None:intergenic | 20.0% |
| !! | AGAACCTTTAATATTACAAA+AGG | - | chr1_4:67260364-67260383 | None:intergenic | 20.0% |
| !!! | ACAAATTGTTCAACATTTTT+TGG | - | chr1_4:67260434-67260453 | None:intergenic | 20.0% |
| !! | ATGACAAATAAGTTAAAATG+AGG | + | chr1_4:67260546-67260565 | Msa0179670:intron | 20.0% |
| !! | AGCTACAATAACATAATTTA+AGG | - | chr1_4:67260860-67260879 | None:intergenic | 20.0% |
| !! | GTAAAAAAAGTTAGAATCAT+GGG | - | chr1_4:67260905-67260924 | None:intergenic | 20.0% |
| !! | CATATTTAATTAGAATCACA+AGG | - | chr1_4:67261490-67261509 | None:intergenic | 20.0% |
| !!! | AATTCTCAACAATTTTCTTT+CGG | + | chr1_4:67261543-67261562 | Msa0179670:intron | 20.0% |
| !!! | TATAAATGTAACTCTGAAAT+AGG | - | chr1_4:67261719-67261738 | None:intergenic | 20.0% |
| !! | TATTTCAGAGTTACATTTAT+AGG | + | chr1_4:67261718-67261737 | Msa0179670:intron | 20.0% |
| !! | ATTTCAGAGTTACATTTATA+GGG | + | chr1_4:67261719-67261738 | Msa0179670:intron | 20.0% |
| !!! | AACATTTTAATCTCAAGAAA+GGG | + | chr1_4:67261772-67261791 | Msa0179670:intron | 20.0% |
| !! | AATTAGTAGTTTAGTACATT+AGG | - | chr1_4:67261974-67261993 | None:intergenic | 20.0% |
| !! | GGTGATAGTTATTAAATTTA+TGG | + | chr1_4:67262028-67262047 | Msa0179670:intron | 20.0% |
| !!! | TTATGGGTTAAATATGTTTT+TGG | + | chr1_4:67262045-67262064 | Msa0179670:intron | 20.0% |
| !! | AGATATGAGTAACAAAAATA+TGG | + | chr1_4:67262325-67262344 | Msa0179670:intron | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | - | chr1_4:67262414-67262433 | None:intergenic | 20.0% |
| !!! | TTTAGGGTTAATTATGTTTT+TGG | - | chr1_4:67262574-67262593 | None:intergenic | 20.0% |
| !! | TATCATATCATATCATGAAT+TGG | + | chr1_4:67263442-67263461 | Msa0179670:three_prime_UTR | 20.0% |
| !!! | TCTTGTTTTTTTGTGTGTAT+AGG | + | chr1_4:67259475-67259494 | Msa0179670:intron | 25.0% |
| ! | AAAAACACAAAAAGAGAAGT+CGG | - | chr1_4:67259703-67259722 | None:intergenic | 25.0% |
| !!! | TGAATTTGGTTAATTGGTTT+TGG | + | chr1_4:67260192-67260211 | Msa0179670:intron | 25.0% |
| ! | AAATGGCATTATGGAAAATT+TGG | - | chr1_4:67260506-67260525 | None:intergenic | 25.0% |
| ! | AAAGAAACAGAAAAGATTGA+GGG | + | chr1_4:67260598-67260617 | Msa0179670:intron | 25.0% |
| ! | CTGTAGTATACATTAATTGA+AGG | - | chr1_4:67260750-67260769 | None:intergenic | 25.0% |
| !!! | ATGTTAGAAAGGGTATTATT+GGG | + | chr1_4:67260773-67260792 | Msa0179670:intron | 25.0% |
| ! | AAATTATGTTATTGTAGCTG+TGG | + | chr1_4:67260861-67260880 | Msa0179670:intron | 25.0% |
| ! | GGTAAAAAAAGTTAGAATCA+TGG | - | chr1_4:67260906-67260925 | None:intergenic | 25.0% |
| ! | ATGGTACTAATTTACAAAAG+AGG | - | chr1_4:67260952-67260971 | None:intergenic | 25.0% |
| ! | GTAATCAGTTGAATTAAACA+TGG | - | chr1_4:67261016-67261035 | None:intergenic | 25.0% |
| ! | AATTCAACTGATTACATTAC+AGG | + | chr1_4:67261021-67261040 | Msa0179670:intron | 25.0% |
| ! | GAAAGAAAATTGTTGAGAAT+TGG | - | chr1_4:67261544-67261563 | None:intergenic | 25.0% |
| !!! | CAACATTTTAATCTCAAGAA+AGG | + | chr1_4:67261771-67261790 | Msa0179670:intron | 25.0% |
| ! | TATTTGTAGTTTATGACTGA+TGG | + | chr1_4:67262007-67262026 | Msa0179670:intron | 25.0% |
| !! | CAAGTTTAGAATACTATGAA+AGG | + | chr1_4:67262228-67262247 | Msa0179670:intron | 25.0% |
| ! | GTGTTAAGAACGTTATTAAA+AGG | - | chr1_4:67262390-67262409 | None:intergenic | 25.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | + | chr1_4:67262455-67262474 | Msa0179670:intron | 25.0% |
| !!! | TAAGTGCAGAAATTTTTTGT+AGG | + | chr1_4:67262486-67262505 | Msa0179670:intron | 25.0% |
| !!! | AAGTGCAGAAATTTTTTGTA+GGG | + | chr1_4:67262487-67262506 | Msa0179670:intron | 25.0% |
| ! | GTATGTGAAATTCTATAGAA+GGG | + | chr1_4:67263163-67263182 | Msa0179670:CDS | 25.0% |
| TGGAATAATAGTTCTCTTGT+TGG | + | chr1_4:67259250-67259269 | Msa0179670:five_prime_UTR | 30.0% | |
| !!! | TCAGCATTTTTTTCTCGAAA+TGG | + | chr1_4:67259297-67259316 | Msa0179670:exon | 30.0% |
| !!! | CAGCATTTTTTTCTCGAAAT+GGG | + | chr1_4:67259298-67259317 | Msa0179670:exon | 30.0% |
| !!! | AGCATTTTTTTCTCGAAATG+GGG | + | chr1_4:67259299-67259318 | Msa0179670:exon | 30.0% |
| GAAGAAAAAGCAAGATTCTT+TGG | - | chr1_4:67259739-67259758 | None:intergenic | 30.0% | |
| ACAACTACTGCTATAGTATA+GGG | - | chr1_4:67259805-67259824 | None:intergenic | 30.0% | |
| TACAACTACTGCTATAGTAT+AGG | - | chr1_4:67259806-67259825 | None:intergenic | 30.0% | |
| ! | ATTTTTCTGAGTTCAAAGTG+TGG | + | chr1_4:67260165-67260184 | Msa0179670:intron | 30.0% |
| ! | TTTTTCTGAGTTCAAAGTGT+GGG | + | chr1_4:67260166-67260185 | Msa0179670:intron | 30.0% |
| GGGATTTGAATTTGGTTAAT+TGG | + | chr1_4:67260186-67260205 | Msa0179670:intron | 30.0% | |
| !!! | ATTTTTTGGCATGCTTGAAA+TGG | - | chr1_4:67260420-67260439 | None:intergenic | 30.0% |
| !! | AATTTGGTAATGAATACGTG+TGG | - | chr1_4:67260490-67260509 | None:intergenic | 30.0% |
| ! | TCTTGTTTCAAATGGCATTA+TGG | - | chr1_4:67260515-67260534 | None:intergenic | 30.0% |
| GAAAGAAACAGAAAAGATTG+AGG | + | chr1_4:67260597-67260616 | Msa0179670:intron | 30.0% | |
| AGAAACAATAAATGAGAGAG+TGG | + | chr1_4:67260624-67260643 | Msa0179670:intron | 30.0% | |
| TTTGGAAAACTCTGTTTGTT+AGG | + | chr1_4:67260655-67260674 | Msa0179670:intron | 30.0% | |
| TACTACAGTACATGTTAGAA+AGG | + | chr1_4:67260762-67260781 | Msa0179670:intron | 30.0% | |
| ACTACAGTACATGTTAGAAA+GGG | + | chr1_4:67260763-67260782 | Msa0179670:intron | 30.0% | |
| !! | CATGTTAGAAAGGGTATTAT+TGG | + | chr1_4:67260772-67260791 | Msa0179670:intron | 30.0% |
| GAAATAGACCAATTGTGATA+GGG | - | chr1_4:67260823-67260842 | None:intergenic | 30.0% | |
| TGAAATAGACCAATTGTGAT+AGG | - | chr1_4:67260824-67260843 | None:intergenic | 30.0% | |
| !! | TGGATTTATGAACTTGTTGT+TGG | + | chr1_4:67261062-67261081 | Msa0179670:CDS | 30.0% |
| !! | GGATTTATGAACTTGTTGTT+GGG | + | chr1_4:67261063-67261082 | Msa0179670:CDS | 30.0% |
| ! | TGTTGTTATTGGAGTTTAAC+TGG | - | chr1_4:67261228-67261247 | None:intergenic | 30.0% |
| ! | ACAGCAAATAGTGTTGTTAT+TGG | - | chr1_4:67261239-67261258 | None:intergenic | 30.0% |
| !!! | CTCGATCTCTGTTTTTTTTA+AGG | + | chr1_4:67261395-67261414 | Msa0179670:intron | 30.0% |
| !!! | GATCTCTGTTTTTTTTAAGG+TGG | + | chr1_4:67261398-67261417 | Msa0179670:intron | 30.0% |
| CATTACATCCATACATTACT+AGG | + | chr1_4:67261463-67261482 | Msa0179670:intron | 30.0% | |
| !! | TTGACTTGTTGTGTAAGATT+AGG | + | chr1_4:67261586-67261605 | Msa0179670:intron | 30.0% |
| AAGATTAGGTAGAACTAGTT+CGG | + | chr1_4:67261600-67261619 | Msa0179670:intron | 30.0% | |
| TAGCTAGGTAATTATATGGT+TGG | - | chr1_4:67261651-67261670 | None:intergenic | 30.0% | |
| CACATAGCTAGGTAATTATA+TGG | - | chr1_4:67261655-67261674 | None:intergenic | 30.0% | |
| AGAGTTACATTTATAGGGTA+TGG | + | chr1_4:67261724-67261743 | Msa0179670:intron | 30.0% | |
| GAGTTACATTTATAGGGTAT+GGG | + | chr1_4:67261725-67261744 | Msa0179670:intron | 30.0% | |
| TTGAGATTAAAATGTTGCGA+AGG | - | chr1_4:67261768-67261787 | None:intergenic | 30.0% | |
| TAGTAGTTTAGTACATTAGG+TGG | - | chr1_4:67261971-67261990 | None:intergenic | 30.0% | |
| ! | TAGAAGGTCGCAATTTTATA+AGG | - | chr1_4:67262072-67262091 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTAGA+AGG | - | chr1_4:67262088-67262107 | None:intergenic | 30.0% | |
| !!! | TTTTGCGATATTTTTTTCGG+AGG | + | chr1_4:67262363-67262382 | Msa0179670:intron | 30.0% |
| AAGTAAGGACTAAACTTACA+AGG | + | chr1_4:67262531-67262550 | Msa0179670:intron | 30.0% | |
| ! | AAGAGGTAGAGAATCATTTT+TGG | + | chr1_4:67263139-67263158 | Msa0179670:CDS | 30.0% |
| CGTATGTGAAATTCTATAGA+AGG | + | chr1_4:67263162-67263181 | Msa0179670:CDS | 30.0% | |
| CGTATGATGAAATGGTTTAT+AGG | + | chr1_4:67263186-67263205 | Msa0179670:CDS | 30.0% | |
| GTAACTATGCTTGTGTGAAA+CGG | + | chr1_4:67259507-67259526 | Msa0179670:CDS | 35.0% | |
| ! | AAACGGTTTCTGAAAGTGAA+AGG | + | chr1_4:67259524-67259543 | Msa0179670:CDS | 35.0% |
| AACTAAGAGCTTGTCTTTCA+TGG | + | chr1_4:67259573-67259592 | Msa0179670:CDS | 35.0% | |
| !! | TGGAGAGAAAGTATTGTTAC+TGG | + | chr1_4:67259593-67259612 | Msa0179670:CDS | 35.0% |
| TTCTCAGCTGAATTATCTGA+AGG | + | chr1_4:67259998-67260017 | Msa0179670:CDS | 35.0% | |
| TCTCAGCTGAATTATCTGAA+GGG | + | chr1_4:67259999-67260018 | Msa0179670:CDS | 35.0% | |
| AAAACTTACCAAAACAGGTC+TGG | - | chr1_4:67260056-67260075 | None:intergenic | 35.0% | |
| CAAAGTGTGGGATTTGAATT+TGG | + | chr1_4:67260178-67260197 | Msa0179670:intron | 35.0% | |
| !! | TCTGATAGTCTTGTTTCATG+CGG | - | chr1_4:67260229-67260248 | None:intergenic | 35.0% |
| AAGGTTCTTCACTCGTTTAT+TGG | + | chr1_4:67260376-67260395 | Msa0179670:intron | 35.0% | |
| !! | TCGTTTATTGGCTTTCACAA+TGG | + | chr1_4:67260388-67260407 | Msa0179670:CDS | 35.0% |
| !! | TTTATTGGCTTTCACAATGG+AGG | + | chr1_4:67260391-67260410 | Msa0179670:CDS | 35.0% |
| ! | CCTAACTCTCTTGTTTCAAA+TGG | - | chr1_4:67260523-67260542 | None:intergenic | 35.0% |
| ! | CCATTTGAAACAAGAGAGTT+AGG | + | chr1_4:67260520-67260539 | Msa0179670:intron | 35.0% |
| GATACATTCCCTATCACAAT+TGG | + | chr1_4:67260812-67260831 | Msa0179670:intron | 35.0% | |
| ! | AATAGAGAGTAGTGGGAAAA+AGG | - | chr1_4:67260927-67260946 | None:intergenic | 35.0% |
| AGAGGTAAATAGAGAGTAGT+GGG | - | chr1_4:67260934-67260953 | None:intergenic | 35.0% | |
| AAGAGGTAAATAGAGAGTAG+TGG | - | chr1_4:67260935-67260954 | None:intergenic | 35.0% | |
| ! | AAAGTACTACTAAAGGGTGA+TGG | - | chr1_4:67260971-67260990 | None:intergenic | 35.0% |
| !! | TTGGGAGCATTGAAAATTGT+GGG | + | chr1_4:67261081-67261100 | Msa0179670:CDS | 35.0% |
| ! | AGTATGCAAAAAGTGATGGA+GGG | - | chr1_4:67261149-67261168 | None:intergenic | 35.0% |
| AAGTATGCAAAAAGTGATGG+AGG | - | chr1_4:67261150-67261169 | None:intergenic | 35.0% | |
| CACAAGTATGCAAAAAGTGA+TGG | - | chr1_4:67261153-67261172 | None:intergenic | 35.0% | |
| !!! | CATCACTTTTTGCATACTTG+TGG | + | chr1_4:67261151-67261170 | Msa0179670:CDS | 35.0% |
| ! | ACTTTTTGCATACTTGTGGA+AGG | + | chr1_4:67261155-67261174 | Msa0179670:CDS | 35.0% |
| GGCTAAACAGTACTAGATAT+AGG | - | chr1_4:67261201-67261220 | None:intergenic | 35.0% | |
| !! | TGTCTTGTTTGTAGTTGTGT+TGG | + | chr1_4:67261256-67261275 | Msa0179670:intron | 35.0% |
| !! | GTCTTGTTTGTAGTTGTGTT+GGG | + | chr1_4:67261257-67261276 | Msa0179670:intron | 35.0% |
| AAAAAAACAGAGATCGAGAG+TGG | - | chr1_4:67261393-67261412 | None:intergenic | 35.0% | |
| TAGTATATCCTTGGATGGAT+TGG | - | chr1_4:67261430-67261449 | None:intergenic | 35.0% | |
| AAGAGCAAGTAGTATATCCT+TGG | - | chr1_4:67261439-67261458 | None:intergenic | 35.0% | |
| ! | TTACAAGGTCGCAATTTTGT+AGG | + | chr1_4:67262546-67262565 | Msa0179670:intron | 35.0% |
| ! | TACAAGGTCGCAATTTTGTA+GGG | + | chr1_4:67262547-67262566 | Msa0179670:intron | 35.0% |
| ! | CATTGATGGTTCGAAATCTA+GGG | - | chr1_4:67262694-67262713 | None:intergenic | 35.0% |
| !!! | AATCTTGGCCGTTGATTTTA+GGG | - | chr1_4:67262775-67262794 | None:intergenic | 35.0% |
| TGGTTTATAGGTCAAAGATG+AGG | + | chr1_4:67263198-67263217 | Msa0179670:CDS | 35.0% | |
| TGATTAGAAACGCTGAGAAA+CGG | - | chr1_4:67263288-67263307 | None:intergenic | 35.0% | |
| !! | TGATGAAGTTGAGTTGATTG+CGG | - | chr1_4:67263333-67263352 | None:intergenic | 35.0% |
| ACACGAGTGTACTTGAAAAT+TGG | - | chr1_4:67263498-67263517 | None:intergenic | 35.0% | |
| ! | TGTGTGTATGCTTGGTAATT+TGG | + | chr1_4:67263515-67263534 | Msa0179670:three_prime_UTR | 35.0% |
| ACTTGAACTCCTCAAAGACA+AGG | + | chr1_4:67259327-67259346 | Msa0179670:CDS | 40.0% | |
| TAGCAGTTTCCTTGTCTTTG+AGG | - | chr1_4:67259339-67259358 | None:intergenic | 40.0% | |
| CAACTTGCAGAAGAAGAAGA+TGG | - | chr1_4:67259631-67259650 | None:intergenic | 40.0% | |
| ACTGCTATAGTATAGGGAGT+GGG | - | chr1_4:67259799-67259818 | None:intergenic | 40.0% | |
| TACTGCTATAGTATAGGGAG+TGG | - | chr1_4:67259800-67259819 | None:intergenic | 40.0% | |
| ! | TTTCAGAGGTATGAAGAGAG+TGG | - | chr1_4:67259838-67259857 | None:intergenic | 40.0% |
| TATTCTTTGTGGGGTTTCAG+AGG | - | chr1_4:67259852-67259871 | None:intergenic | 40.0% | |
| AGCTGAATTATCTGAAGGGT+TGG | + | chr1_4:67260003-67260022 | Msa0179670:CDS | 40.0% | |
| ! | TGATGAATCCAGACCTGTTT+TGG | + | chr1_4:67260045-67260064 | Msa0179670:CDS | 40.0% |
| AATAAATGAGAGAGTGGAGC+AGG | + | chr1_4:67260630-67260649 | Msa0179670:intron | 40.0% | |
| ! | CTCTGTTTGTTAGGATTCAC+CGG | + | chr1_4:67260664-67260683 | Msa0179670:intron | 40.0% |
| !! | GTTGGGAGCATTGAAAATTG+TGG | + | chr1_4:67261080-67261099 | Msa0179670:CDS | 40.0% |
| TATTGGAGTTTAACTGGCAG+TGG | - | chr1_4:67261222-67261241 | None:intergenic | 40.0% | |
| ACAACAACTACGCATGTAAC+TGG | + | chr1_4:67261363-67261382 | Msa0179670:intron | 40.0% | |
| !! | TATCCTTGGATGGATTGGAT+TGG | - | chr1_4:67261425-67261444 | None:intergenic | 40.0% |
| GCAAGTAGTATATCCTTGGA+TGG | - | chr1_4:67261435-67261454 | None:intergenic | 40.0% | |
| CACAAGGACCTAGTAATGTA+TGG | - | chr1_4:67261474-67261493 | None:intergenic | 40.0% | |
| AATAGTGTGTTGTCATGTGC+AGG | + | chr1_4:67262620-67262639 | Msa0179670:intron | 40.0% | |
| ATAGTGTGTTGTCATGTGCA+GGG | + | chr1_4:67262621-67262640 | Msa0179670:intron | 40.0% | |
| !! | CATGTTGATAGCTCAACGAA+TGG | - | chr1_4:67262654-67262673 | None:intergenic | 40.0% |
| ! | CCATTGATGGTTCGAAATCT+AGG | - | chr1_4:67262695-67262714 | None:intergenic | 40.0% |
| CCTAGATTTCGAACCATCAA+TGG | + | chr1_4:67262692-67262711 | Msa0179670:CDS | 40.0% | |
| AAGTCGTTGTAGTCCATTGA+TGG | - | chr1_4:67262708-67262727 | None:intergenic | 40.0% | |
| !!! | CCGTTGATTTTAGGGTTGAT+GGG | - | chr1_4:67262767-67262786 | None:intergenic | 40.0% |
| CCCATCAACCCTAAAATCAA+CGG | + | chr1_4:67262764-67262783 | Msa0179670:CDS | 40.0% | |
| !!! | CAATCTTGGCCGTTGATTTT+AGG | - | chr1_4:67262776-67262795 | None:intergenic | 40.0% |
| CTAAAATCAACGGCCAAGAT+TGG | + | chr1_4:67262774-67262793 | Msa0179670:CDS | 40.0% | |
| AACACATCATCGTCCAAAGT+GGG | + | chr1_4:67262882-67262901 | Msa0179670:CDS | 40.0% | |
| GATAATGTGAAGGTGGAAAG+AGG | + | chr1_4:67263122-67263141 | Msa0179670:CDS | 40.0% | |
| ! | TAGAAGGGCGTATGATGAAA+TGG | + | chr1_4:67263178-67263197 | Msa0179670:CDS | 40.0% |
| TAGAGACTAATCCACCAAGT+GGG | - | chr1_4:67263226-67263245 | None:intergenic | 40.0% | |
| ATAGAGACTAATCCACCAAG+TGG | - | chr1_4:67263227-67263246 | None:intergenic | 40.0% | |
| CTCTCTCTCTGCTGAGTTAT+TGG | + | chr1_4:67259174-67259193 | Msa0179670:five_prime_UTR | 45.0% | |
| TACCTGTTTGACAGTGAGAG+GGG | - | chr1_4:67259398-67259417 | None:intergenic | 45.0% | |
| GTACCTGTTTGACAGTGAGA+GGG | - | chr1_4:67259399-67259418 | None:intergenic | 45.0% | |
| TGTACCTGTTTGACAGTGAG+AGG | - | chr1_4:67259400-67259419 | None:intergenic | 45.0% | |
| CTGCTATAGTATAGGGAGTG+GGG | - | chr1_4:67259798-67259817 | None:intergenic | 45.0% | |
| !! | ATCTGAAGGGTTGGCTTATG+TGG | + | chr1_4:67260012-67260031 | Msa0179670:CDS | 45.0% |
| !! | ATTGGCTTTCACAATGGAGG+TGG | + | chr1_4:67260394-67260413 | Msa0179670:CDS | 45.0% |
| GGTAATGAATACGTGTGGAG+TGG | - | chr1_4:67260485-67260504 | None:intergenic | 45.0% | |
| TTGAGTCTGTGACACAACAG+GGG | - | chr1_4:67260727-67260746 | None:intergenic | 45.0% | |
| GTTGAGTCTGTGACACAACA+GGG | - | chr1_4:67260728-67260747 | None:intergenic | 45.0% | |
| ! | GGCTTTTACAGATCAGCATC+TGG | + | chr1_4:67261042-67261061 | Msa0179670:intron | 45.0% |
| ATTGTGGGTGAGTACTATCC+AGG | + | chr1_4:67261096-67261115 | Msa0179670:CDS | 45.0% | |
| ACAACTACGCATGTAACTGG+AGG | + | chr1_4:67261366-67261385 | Msa0179670:intron | 45.0% | |
| !!! | GCCGTTGATTTTAGGGTTGA+TGG | - | chr1_4:67262768-67262787 | None:intergenic | 45.0% |
| GGATGAGCATGAACCAATCT+TGG | - | chr1_4:67262790-67262809 | None:intergenic | 45.0% | |
| ATGGTTTGAGTGAGTCGAGT+TGG | - | chr1_4:67262839-67262858 | None:intergenic | 45.0% | |
| AACTCGACTCACTCAAACCA+TGG | + | chr1_4:67262838-67262857 | Msa0179670:CDS | 45.0% | |
| AAACCATGGTACCTTAGCCT+AGG | + | chr1_4:67262852-67262871 | Msa0179670:CDS | 45.0% | |
| ATGATGTGTTGTCTCCTCCT+AGG | - | chr1_4:67262872-67262891 | None:intergenic | 45.0% | |
| CAACACATCATCGTCCAAAG+TGG | + | chr1_4:67262881-67262900 | Msa0179670:CDS | 45.0% | |
| GGATAGGGATAATGTGAAGG+TGG | + | chr1_4:67263115-67263134 | Msa0179670:CDS | 45.0% | |
| AGAGACTAATCCACCAAGTG+GGG | - | chr1_4:67263225-67263244 | None:intergenic | 45.0% | |
| AAACGGAAAGGTGAGTGTGA+CGG | - | chr1_4:67263271-67263290 | None:intergenic | 45.0% | |
| AGAAACGCTGAGAAACGGAA+AGG | - | chr1_4:67263283-67263302 | None:intergenic | 45.0% | |
| !! | AAGTTGAGTTGATTGCGGTG+TGG | - | chr1_4:67263328-67263347 | None:intergenic | 45.0% |
| TACACTCGTGTGTGTATGCT+TGG | + | chr1_4:67263507-67263526 | Msa0179670:three_prime_UTR | 45.0% | |
| !!! | AAAATAATAATTTTTAATGA+TGG | + | chr1_4:67259928-67259947 | Msa0179670:intron | 5.0% |
| GGTTGCGTGAAACAGAAGCT+TGG | + | chr1_4:67259230-67259249 | Msa0179670:five_prime_UTR | 50.0% | |
| AACCCCTCTCACTGTCAAAC+AGG | + | chr1_4:67259393-67259412 | Msa0179670:CDS | 50.0% | |
| ! | AGTCGGCGTGGTTTTCACAA+CGG | - | chr1_4:67259686-67259705 | None:intergenic | 50.0% |
| CACAAAAAGAGAAGTCGGCG+TGG | - | chr1_4:67259698-67259717 | None:intergenic | 50.0% | |
| TGAATACGTGTGGAGTGGAG+TGG | - | chr1_4:67260480-67260499 | None:intergenic | 50.0% | |
| ! | GTTTGTTAGGATTCACCGGC+AGG | + | chr1_4:67260668-67260687 | Msa0179670:intron | 50.0% |
| GGTTGAGTCTGTGACACAAC+AGG | - | chr1_4:67260729-67260748 | None:intergenic | 50.0% | |
| TGGGTGAGTACTATCCAGGA+CGG | + | chr1_4:67261100-67261119 | Msa0179670:CDS | 50.0% | |
| AACGCTTTGCTTAACCGTCC+TGG | - | chr1_4:67261117-67261136 | None:intergenic | 50.0% | |
| GGTCCAATCCAATCCATCCA+AGG | + | chr1_4:67261419-67261438 | Msa0179670:intron | 50.0% | |
| AGCACGTGAGTCACATAGCT+AGG | - | chr1_4:67261666-67261685 | None:intergenic | 50.0% | |
| ATCTGAGGGATGAGGCTCTT+GGG | - | chr1_4:67262740-67262759 | None:intergenic | 50.0% | |
| AATCTGAGGGATGAGGCTCT+TGG | - | chr1_4:67262741-67262760 | None:intergenic | 50.0% | |
| !! | GGTTGATGGGTCGAATCTGA+GGG | - | chr1_4:67262754-67262773 | None:intergenic | 50.0% |
| !! | GAGTTGGTGTGAGACTGTGA+AGG | - | chr1_4:67262823-67262842 | None:intergenic | 50.0% |
| TGTTGTCTCCTCCTAGGCTA+AGG | - | chr1_4:67262866-67262885 | None:intergenic | 50.0% | |
| TGTAAGGGATGATGCTGCTG+GGG | - | chr1_4:67262922-67262941 | None:intergenic | 50.0% | |
| GTGTAAGGGATGATGCTGCT+GGG | - | chr1_4:67262923-67262942 | None:intergenic | 50.0% | |
| !! | CAGTGGGTTACGTGCTATTG+GGG | - | chr1_4:67262976-67262995 | None:intergenic | 50.0% |
| !! | CCAGTGGGTTACGTGCTATT+GGG | - | chr1_4:67262977-67262996 | None:intergenic | 50.0% |
| CCAATAGCACGTAACCCACT+GGG | + | chr1_4:67262975-67262994 | Msa0179670:CDS | 50.0% | |
| GGCGTCGTTTCTTCAATCTC+CGG | + | chr1_4:67263076-67263095 | Msa0179670:CDS | 50.0% | |
| ! | AATCTCCGGCGACGTTTTTC+CGG | + | chr1_4:67263090-67263109 | Msa0179670:CDS | 50.0% |
| TCACATTATCCCTATCCCGC+CGG | - | chr1_4:67263112-67263131 | None:intergenic | 50.0% | |
| GCGGGATAGGGATAATGTGA+AGG | + | chr1_4:67263112-67263131 | Msa0179670:CDS | 50.0% | |
| GAGACTAATCCACCAAGTGG+GGG | - | chr1_4:67263224-67263243 | None:intergenic | 50.0% | |
| ! | GTCGGCGTGGTTTTCACAAC+GGG | - | chr1_4:67259685-67259704 | None:intergenic | 55.0% |
| !! | GAAGGGTTGGCTTATGTGGC+TGG | + | chr1_4:67260016-67260035 | Msa0179670:CDS | 55.0% |
| GAGAGAGTGGAGCAGGCATT+TGG | + | chr1_4:67260637-67260656 | Msa0179670:intron | 55.0% | |
| CACATTCTGTGTGCTCCCTC+AGG | - | chr1_4:67260695-67260714 | None:intergenic | 55.0% | |
| ! | GGGAGCACACAGAATGTGTC+CGG | + | chr1_4:67260697-67260716 | Msa0179670:intron | 55.0% |
| TGGGTCGAATCTGAGGGATG+AGG | - | chr1_4:67262748-67262767 | None:intergenic | 55.0% | |
| !! | GGGTTGATGGGTCGAATCTG+AGG | - | chr1_4:67262755-67262774 | None:intergenic | 55.0% |
| ! | GACTGTGAAGGAGAAGCGTG+AGG | - | chr1_4:67262811-67262830 | None:intergenic | 55.0% |
| ! | CCTCCTAGGCTAAGGTACCA+TGG | - | chr1_4:67262858-67262877 | None:intergenic | 55.0% |
| CCATGGTACCTTAGCCTAGG+AGG | + | chr1_4:67262855-67262874 | Msa0179670:CDS | 55.0% | |
| GGTGTAAGGGATGATGCTGC+TGG | - | chr1_4:67262924-67262943 | None:intergenic | 55.0% | |
| !! | GCGAGCGTTGAGTGGTGTAA+GGG | - | chr1_4:67262937-67262956 | None:intergenic | 55.0% |
| !! | AGCGAGCGTTGAGTGGTGTA+AGG | - | chr1_4:67262938-67262957 | None:intergenic | 55.0% |
| ! | ACGTGCTATTGGGGAAGCGA+AGG | - | chr1_4:67262967-67262986 | None:intergenic | 55.0% |
| CCCAATAGCACGTAACCCAC+TGG | + | chr1_4:67262974-67262993 | Msa0179670:CDS | 55.0% | |
| !! | CCCAGTGGGTTACGTGCTAT+TGG | - | chr1_4:67262978-67262997 | None:intergenic | 55.0% |
| ! | TCTGCGGCAGTGGTGTTGAA+GGG | - | chr1_4:67263028-67263047 | None:intergenic | 55.0% |
| TGAGGAGCTGTCACTCTCTG+CGG | - | chr1_4:67263044-67263063 | None:intergenic | 55.0% | |
| AGAGAGTGACAGCTCCTCAC+CGG | + | chr1_4:67263045-67263064 | Msa0179670:CDS | 55.0% | |
| AGCTCCTCACCGGAGTACAA+CGG | + | chr1_4:67263055-67263074 | Msa0179670:CDS | 55.0% | |
| GAAACGACGCCGTTGTACTC+CGG | - | chr1_4:67263067-67263086 | None:intergenic | 55.0% | |
| ! | GACGTTTTTCCGGCGGGATA+GGG | + | chr1_4:67263100-67263119 | Msa0179670:CDS | 55.0% |
| TCAAAGATGAGGCCCCCACT+TGG | + | chr1_4:67263209-67263228 | Msa0179670:CDS | 55.0% | |
| ! | GTGTGACGGCGTCTAAGATG+AGG | - | chr1_4:67263257-67263276 | None:intergenic | 55.0% |
| GATTCACCGGCAGGACCTGA+GGG | + | chr1_4:67260677-67260696 | Msa0179670:intron | 60.0% | |
| !! | GTGACACAACAGGGGCACTC+CGG | - | chr1_4:67260719-67260738 | None:intergenic | 60.0% |
| GAGGGATGAGGCTCTTGGGT+AGG | - | chr1_4:67262736-67262755 | None:intergenic | 60.0% | |
| AGGGATGATGCTGCTGGGGA+GGG | - | chr1_4:67262918-67262937 | None:intergenic | 60.0% | |
| AAGGGATGATGCTGCTGGGG+AGG | - | chr1_4:67262919-67262938 | None:intergenic | 60.0% | |
| !! | GAGAGTGAGCGAGCGTTGAG+TGG | - | chr1_4:67262945-67262964 | None:intergenic | 60.0% |
| AACAACCCCTTCCTGCTGGC+TGG | - | chr1_4:67263005-67263024 | None:intergenic | 60.0% | |
| AGGGAACAACCCCTTCCTGC+TGG | - | chr1_4:67263009-67263028 | None:intergenic | 60.0% | |
| ! | CTCTGCGGCAGTGGTGTTGA+AGG | - | chr1_4:67263029-67263048 | None:intergenic | 60.0% |
| ! | CGACGTTTTTCCGGCGGGAT+AGG | + | chr1_4:67263099-67263118 | Msa0179670:CDS | 60.0% |
| AAGATGAGGCCCCCACTTGG+TGG | + | chr1_4:67263212-67263231 | Msa0179670:CDS | 60.0% | |
| GGATTCACCGGCAGGACCTG+AGG | + | chr1_4:67260676-67260695 | Msa0179670:intron | 65.0% | |
| TGTGCTCCCTCAGGTCCTGC+CGG | - | chr1_4:67260686-67260705 | None:intergenic | 65.0% | |
| ! | GGGGCTAGTGGGTCCCACTT+TGG | - | chr1_4:67262898-67262917 | None:intergenic | 65.0% |
| GGGATGATGCTGCTGGGGAG+GGG | - | chr1_4:67262917-67262936 | None:intergenic | 65.0% | |
| ! | ACCCCTTCCTGCTGGCTGGT+GGG | - | chr1_4:67263001-67263020 | None:intergenic | 65.0% |
| ! | AACCCCTTCCTGCTGGCTGG+TGG | - | chr1_4:67263002-67263021 | None:intergenic | 65.0% |
| GCTGTCACTCTCTGCGGCAG+TGG | - | chr1_4:67263038-67263057 | None:intergenic | 65.0% | |
| GACGCCGTTGTACTCCGGTG+AGG | - | chr1_4:67263062-67263081 | None:intergenic | 65.0% | |
| ! | CTCCGGCGACGTTTTTCCGG+CGG | + | chr1_4:67263093-67263112 | Msa0179670:CDS | 65.0% |
| ! | TCCGGCGACGTTTTTCCGGC+GGG | + | chr1_4:67263094-67263113 | Msa0179670:CDS | 65.0% |
| TCCCGCCGGAAAAACGTCGC+CGG | - | chr1_4:67263098-67263117 | None:intergenic | 65.0% | |
| ! | GCTGCTGGGGAGGGGCTAGT+GGG | - | chr1_4:67262909-67262928 | None:intergenic | 70.0% |
| TGCTGCTGGGGAGGGGCTAG+TGG | - | chr1_4:67262910-67262929 | None:intergenic | 70.0% | |
| ! | TGCTGGCTGGTGGGCCCAGT+GGG | - | chr1_4:67262992-67263011 | None:intergenic | 70.0% |
| GGCCCACCAGCCAGCAGGAA+GGG | + | chr1_4:67262996-67263015 | Msa0179670:CDS | 70.0% | |
| GCCCACCAGCCAGCAGGAAG+GGG | + | chr1_4:67262997-67263016 | Msa0179670:CDS | 70.0% | |
| ! | CTGCTGGCTGGTGGGCCCAG+TGG | - | chr1_4:67262993-67263012 | None:intergenic | 75.0% |
| CACTGGGCCCACCAGCCAGC+AGG | + | chr1_4:67262991-67263010 | Msa0179670:CDS | 75.0% | |
| GGGCCCACCAGCCAGCAGGA+AGG | + | chr1_4:67262995-67263014 | Msa0179670:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 67259126 | 67263561 | 67259126 | ID=Msa0179670;Name=Msa0179670 |
| chr1_4 | mRNA | 67259126 | 67263561 | 67259126 | ID=Msa0179670-mRNA-1;Parent=Msa0179670;Name=Msa0179670-mRNA-1;_AED=0.09;_eAED=0.09;_QI=190|1|1|1|1|1|7|257|413 |
| chr1_4 | exon | 67259126 | 67259414 | 67259126 | ID=Msa0179670-mRNA-1:exon:22106;Parent=Msa0179670-mRNA-1 |
| chr1_4 | exon | 67259497 | 67259614 | 67259497 | ID=Msa0179670-mRNA-1:exon:22107;Parent=Msa0179670-mRNA-1 |
| chr1_4 | exon | 67259978 | 67260066 | 67259978 | ID=Msa0179670-mRNA-1:exon:22108;Parent=Msa0179670-mRNA-1 |
| chr1_4 | exon | 67260221 | 67260267 | 67260221 | ID=Msa0179670-mRNA-1:exon:22109;Parent=Msa0179670-mRNA-1 |
| chr1_4 | exon | 67260379 | 67260470 | 67260379 | ID=Msa0179670-mRNA-1:exon:22110;Parent=Msa0179670-mRNA-1 |
| chr1_4 | exon | 67261043 | 67261176 | 67261043 | ID=Msa0179670-mRNA-1:exon:22111;Parent=Msa0179670-mRNA-1 |
| chr1_4 | exon | 67262642 | 67263561 | 67262642 | ID=Msa0179670-mRNA-1:exon:22112;Parent=Msa0179670-mRNA-1 |
| chr1_4 | five_prime_UTR | 67259126 | 67259315 | 67259126 | ID=Msa0179670-mRNA-1:five_prime_utr;Parent=Msa0179670-mRNA-1 |
| chr1_4 | CDS | 67259316 | 67259414 | 67259316 | ID=Msa0179670-mRNA-1:cds;Parent=Msa0179670-mRNA-1 |
| chr1_4 | CDS | 67259497 | 67259614 | 67259497 | ID=Msa0179670-mRNA-1:cds;Parent=Msa0179670-mRNA-1 |
| chr1_4 | CDS | 67259978 | 67260066 | 67259978 | ID=Msa0179670-mRNA-1:cds;Parent=Msa0179670-mRNA-1 |
| chr1_4 | CDS | 67260221 | 67260267 | 67260221 | ID=Msa0179670-mRNA-1:cds;Parent=Msa0179670-mRNA-1 |
| chr1_4 | CDS | 67260379 | 67260470 | 67260379 | ID=Msa0179670-mRNA-1:cds;Parent=Msa0179670-mRNA-1 |
| chr1_4 | CDS | 67261043 | 67261176 | 67261043 | ID=Msa0179670-mRNA-1:cds;Parent=Msa0179670-mRNA-1 |
| chr1_4 | CDS | 67262642 | 67263304 | 67262642 | ID=Msa0179670-mRNA-1:cds;Parent=Msa0179670-mRNA-1 |
| chr1_4 | three_prime_UTR | 67263305 | 67263561 | 67263305 | ID=Msa0179670-mRNA-1:three_prime_utr;Parent=Msa0179670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
