Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0420680 | XP_003601473.2 | 94.779 | 249 | 6 | 1 | 3 | 251 | 2 | 243 | 1.92e-165 | 467 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0420680 | sp|Q9FZ86|PDCB3_ARATH | 48.837 | 86 | 44 | 0 | 163 | 248 | 19 | 104 | 3.49e-22 | 93.2 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0420680 | A0A396IY86 | 94.779 | 249 | 6 | 1 | 3 | 251 | 2 | 243 | 9.17e-166 | 467 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0005390 | Msa0420680 | 0.816257 | 6.071725e-52 | -8.615850e-47 |
Msa0015150 | Msa0420680 | 0.807478 | 4.956912e-50 | -8.615850e-47 |
Msa0029960 | Msa0420680 | 0.810042 | 1.403178e-50 | -8.615850e-47 |
Msa0053850 | Msa0420680 | 0.832059 | 1.173236e-55 | -8.615850e-47 |
Msa0069350 | Msa0420680 | 0.836699 | 8.030040e-57 | -8.615850e-47 |
Msa0072520 | Msa0420680 | 0.806263 | 8.952943e-50 | -8.615850e-47 |
Msa0086250 | Msa0420680 | 0.837228 | 5.884276e-57 | -8.615850e-47 |
Msa0132700 | Msa0420680 | 0.810646 | 1.039250e-50 | -8.615850e-47 |
Msa0155180 | Msa0420680 | 0.828040 | 1.121365e-54 | -8.615850e-47 |
Msa0161930 | Msa0420680 | 0.815891 | 7.326066e-52 | -8.615850e-47 |
Msa0173380 | Msa0420680 | 0.830063 | 3.626556e-55 | -8.615850e-47 |
Msa0179670 | Msa0420680 | 0.813076 | 3.073525e-51 | -8.615850e-47 |
Msa0181880 | Msa0420680 | 0.810198 | 1.298395e-50 | -8.615850e-47 |
Msa0221180 | Msa0420680 | 0.800287 | 1.546828e-48 | -8.615850e-47 |
Msa0382530 | Msa0420680 | 0.817038 | 4.056543e-52 | -8.615850e-47 |
Msa0384870 | Msa0420680 | 0.809781 | 1.596613e-50 | -8.615850e-47 |
Msa0420680 | Msa0432320 | 0.801044 | 1.084072e-48 | -8.615850e-47 |
Msa0420680 | Msa0451170 | 0.805195 | 1.501173e-49 | -8.615850e-47 |
Msa0420680 | Msa0455970 | 0.811626 | 6.370868e-51 | -8.615850e-47 |
Msa0420680 | Msa0466520 | 0.816310 | 5.907592e-52 | -8.615850e-47 |
Msa0420680 | Msa0482080 | 0.815383 | 9.509209e-52 | -8.615850e-47 |
Msa0420680 | Msa0486460 | 0.841285 | 5.214756e-58 | -8.615850e-47 |
Msa0420680 | Msa0498610 | 0.810244 | 1.269087e-50 | -8.615850e-47 |
Msa0420680 | Msa0512520 | 0.982875 | 3.117402e-156 | -8.615850e-47 |
Msa0420680 | Msa0513080 | 0.821051 | 4.959183e-53 | -8.615850e-47 |
Msa0420680 | Msa0518680 | 0.810074 | 1.381004e-50 | -8.615850e-47 |
Msa0420680 | Msa0525210 | 0.817884 | 2.616424e-52 | -8.615850e-47 |
Msa0420680 | Msa0541740 | 0.801528 | 8.630081e-49 | -8.615850e-47 |
Msa0420680 | Msa0557850 | 0.844782 | 6.107127e-59 | -8.615850e-47 |
Msa0420680 | Msa0562350 | 0.811741 | 6.016232e-51 | -8.615850e-47 |
Msa0420680 | Msa0564980 | 0.808882 | 2.488992e-50 | -8.615850e-47 |
Msa0420680 | Msa0612520 | 0.831073 | 2.052069e-55 | -8.615850e-47 |
Msa0420680 | Msa0620900 | 0.827643 | 1.396625e-54 | -8.615850e-47 |
Msa0420680 | Msa0653160 | 0.815995 | 6.946791e-52 | -8.615850e-47 |
Msa0420680 | Msa0690320 | 0.803177 | 3.947741e-49 | -8.615850e-47 |
Msa0420680 | Msa0695560 | 0.831344 | 1.760434e-55 | -8.615850e-47 |
Msa0420680 | Msa0817360 | 0.803804 | 2.927257e-49 | -8.615850e-47 |
Msa0420680 | Msa0876630 | 0.800257 | 1.568649e-48 | -8.615850e-47 |
Msa0420680 | Msa1014320 | 0.801196 | 1.009056e-48 | -8.615850e-47 |
Msa0420680 | Msa1034960 | 0.840411 | 8.839439e-58 | -8.615850e-47 |
Msa0420680 | Msa1046120 | 0.819117 | 1.374353e-52 | -8.615850e-47 |
Msa0420680 | Msa1055310 | 0.801053 | 1.079545e-48 | -8.615850e-47 |
Msa0420680 | Msa1091050 | 0.826826 | 2.192043e-54 | -8.615850e-47 |
Msa0420680 | Msa1093340 | 0.825345 | 4.931376e-54 | -8.615850e-47 |
Msa0420680 | Msa1130780 | 0.848244 | 6.934136e-60 | -8.615850e-47 |
Msa0420680 | Msa1131150 | 0.950951 | 5.672805e-109 | -8.615850e-47 |
Msa0420680 | Msa1133970 | 0.820623 | 6.219578e-53 | -8.615850e-47 |
Msa0420680 | Msa1134040 | 0.821897 | 3.162529e-53 | -8.615850e-47 |
Msa0420680 | Msa1187760 | 0.835034 | 2.122216e-56 | -8.615850e-47 |
Msa0420680 | Msa1209320 | 0.837303 | 5.627699e-57 | -8.615850e-47 |
Msa0420680 | Msa1209720 | 0.824556 | 7.569537e-54 | -8.615850e-47 |
Msa0420680 | Msa1228630 | 0.828371 | 9.331536e-55 | -8.615850e-47 |
Msa0420680 | Msa1255220 | 0.829944 | 3.877020e-55 | -8.615850e-47 |
Msa0420680 | Msa1341750 | 0.849708 | 2.718541e-60 | -8.615850e-47 |
Msa0420680 | Msa1342810 | 0.806204 | 9.216587e-50 | -8.615850e-47 |
Msa0420680 | Msa1356220 | 0.982615 | 1.504413e-155 | -8.615850e-47 |
Msa0420680 | Msa1406720 | 0.813242 | 2.827024e-51 | -8.615850e-47 |
Msa0420680 | Msa1417930 | 0.841294 | 5.184824e-58 | -8.615850e-47 |
Msa0420680 | Msa1429860 | 0.802242 | 6.156231e-49 | -8.615850e-47 |
Msa0420680 | Msa1435630 | 0.819301 | 1.248009e-52 | -8.615850e-47 |
Msa0262750 | Msa0420680 | 0.805056 | 1.604651e-49 | -8.615850e-47 |
Msa0300470 | Msa0420680 | 0.802261 | 6.102180e-49 | -8.615850e-47 |
Msa0359010 | Msa0420680 | 0.802536 | 5.354246e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0420680 | MtrunA17_Chr3g0120401 | 94.779 | 249 | 6 | 1 | 3 | 251 | 2 | 243 | 1.77e-169 | 467 |
Msa0420680 | MtrunA17_Chr1g0213651 | 74.157 | 89 | 23 | 0 | 160 | 248 | 271 | 359 | 1.92e-43 | 150 |
Msa0420680 | MtrunA17_Chr5g0401301 | 61.538 | 91 | 33 | 2 | 160 | 248 | 324 | 414 | 4.76e-32 | 121 |
Msa0420680 | MtrunA17_Chr8g0378361 | 51.685 | 89 | 43 | 0 | 163 | 251 | 28 | 116 | 2.18e-28 | 106 |
Msa0420680 | MtrunA17_Chr1g0177171 | 55.294 | 85 | 37 | 1 | 165 | 248 | 406 | 490 | 5.28e-26 | 105 |
Msa0420680 | MtrunA17_Chr5g0447651 | 49.425 | 87 | 43 | 1 | 161 | 246 | 26 | 112 | 2.59e-24 | 94.0 |
Msa0420680 | MtrunA17_Chr8g0381081 | 45.000 | 100 | 54 | 1 | 152 | 250 | 44 | 143 | 1.27e-23 | 94.0 |
Msa0420680 | MtrunA17_Chr5g0439251 | 54.430 | 79 | 35 | 1 | 165 | 242 | 382 | 460 | 2.78e-23 | 97.8 |
Msa0420680 | MtrunA17_Chr8g0378381 | 45.238 | 84 | 46 | 0 | 165 | 248 | 32 | 115 | 3.19e-23 | 90.9 |
Msa0420680 | MtrunA17_Chr8g0378371 | 47.619 | 84 | 41 | 1 | 165 | 248 | 33 | 113 | 3.44e-23 | 90.9 |
Msa0420680 | MtrunA17_Chr1g0154991 | 46.429 | 84 | 45 | 0 | 165 | 248 | 20 | 103 | 2.05e-22 | 88.6 |
Msa0420680 | MtrunA17_Chr7g0271411 | 48.235 | 85 | 42 | 2 | 165 | 248 | 160 | 243 | 5.27e-22 | 92.4 |
Msa0420680 | MtrunA17_Chr2g0304061 | 47.126 | 87 | 45 | 1 | 165 | 251 | 158 | 243 | 1.04e-21 | 92.0 |
Msa0420680 | MtrunA17_Chr4g0076141 | 48.276 | 87 | 44 | 1 | 157 | 242 | 5 | 91 | 1.41e-21 | 86.3 |
Msa0420680 | MtrunA17_Chr8g0378401 | 45.679 | 81 | 44 | 0 | 165 | 245 | 32 | 112 | 1.55e-21 | 86.7 |
Msa0420680 | MtrunA17_Chr4g0076131 | 42.708 | 96 | 54 | 1 | 155 | 249 | 18 | 113 | 1.71e-21 | 86.7 |
Msa0420680 | MtrunA17_Chr4g0061401 | 50.562 | 89 | 43 | 1 | 160 | 248 | 19 | 106 | 1.88e-21 | 89.4 |
Msa0420680 | MtrunA17_Chr1g0193131 | 53.846 | 78 | 35 | 1 | 165 | 242 | 420 | 496 | 3.10e-21 | 92.4 |
Msa0420680 | MtrunA17_Chr3g0096451 | 40.179 | 112 | 63 | 3 | 140 | 248 | 85 | 195 | 4.95e-21 | 89.0 |
Msa0420680 | MtrunA17_Chr6g0487261 | 43.820 | 89 | 48 | 1 | 165 | 251 | 369 | 457 | 6.40e-21 | 91.3 |
Msa0420680 | MtrunA17_Chr5g0419121 | 54.167 | 72 | 33 | 0 | 163 | 234 | 20 | 91 | 1.33e-20 | 87.8 |
Msa0420680 | MtrunA17_Chr8g0389741 | 45.882 | 85 | 45 | 1 | 165 | 248 | 368 | 452 | 3.29e-20 | 89.4 |
Msa0420680 | MtrunA17_Chr4g0043151 | 52.778 | 72 | 34 | 0 | 163 | 234 | 19 | 90 | 1.84e-19 | 83.2 |
Msa0420680 | MtrunA17_Chr4g0075031 | 45.882 | 85 | 45 | 1 | 165 | 248 | 382 | 466 | 2.42e-19 | 86.7 |
Msa0420680 | MtrunA17_Chr5g0443331 | 44.318 | 88 | 47 | 2 | 165 | 251 | 108 | 194 | 3.21e-19 | 84.3 |
Msa0420680 | MtrunA17_Chr3g0121271 | 45.882 | 85 | 45 | 1 | 165 | 248 | 362 | 446 | 4.18e-19 | 85.9 |
Msa0420680 | MtrunA17_Chr8g0378621 | 45.977 | 87 | 46 | 1 | 163 | 248 | 362 | 448 | 1.35e-18 | 84.7 |
Msa0420680 | MtrunA17_Chr7g0234821 | 42.727 | 110 | 58 | 2 | 140 | 248 | 353 | 458 | 1.88e-18 | 84.0 |
Msa0420680 | MtrunA17_Chr8g0339191 | 42.268 | 97 | 51 | 2 | 151 | 246 | 364 | 456 | 2.23e-18 | 84.0 |
Msa0420680 | MtrunA17_Chr3g0144531 | 44.318 | 88 | 49 | 0 | 159 | 246 | 365 | 452 | 3.73e-18 | 83.2 |
Msa0420680 | MtrunA17_Chr4g0040911 | 38.947 | 95 | 57 | 1 | 155 | 248 | 27 | 121 | 6.27e-17 | 76.3 |
Msa0420680 | MtrunA17_Chr4g0034901 | 40.659 | 91 | 53 | 1 | 159 | 248 | 369 | 459 | 9.02e-17 | 79.3 |
Msa0420680 | MtrunA17_Chr7g0223961 | 35.354 | 99 | 64 | 0 | 148 | 246 | 348 | 446 | 2.21e-16 | 77.8 |
Msa0420680 | MtrunA17_Chr4g0043511 | 36.905 | 84 | 53 | 0 | 165 | 248 | 420 | 503 | 6.88e-16 | 76.6 |
Msa0420680 | MtrunA17_Chr1g0161011 | 43.529 | 85 | 47 | 1 | 165 | 248 | 361 | 445 | 9.07e-16 | 76.3 |
Msa0420680 | MtrunA17_Chr5g0434591 | 40.000 | 85 | 50 | 1 | 165 | 248 | 360 | 444 | 6.01e-15 | 73.9 |
Msa0420680 | MtrunA17_Chr2g0313891 | 38.095 | 84 | 51 | 1 | 165 | 248 | 30 | 112 | 1.29e-13 | 65.5 |
Msa0420680 | MtrunA17_Chr8g0380231 | 49.254 | 67 | 32 | 2 | 177 | 242 | 29 | 94 | 1.93e-13 | 64.7 |
Msa0420680 | MtrunA17_Chr3g0110371 | 37.647 | 85 | 52 | 1 | 165 | 248 | 361 | 445 | 1.07e-12 | 67.4 |
Msa0420680 | MtrunA17_Chr4g0046311 | 37.500 | 80 | 49 | 1 | 164 | 242 | 372 | 451 | 7.47e-12 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0420680 | AT1G79480.2 | 55.484 | 155 | 58 | 3 | 97 | 249 | 249 | 394 | 1.91e-43 | 151 |
Msa0420680 | AT1G79480.1 | 55.484 | 155 | 58 | 3 | 97 | 249 | 250 | 395 | 2.03e-43 | 151 |
Msa0420680 | AT5G67460.1 | 50.993 | 151 | 63 | 6 | 107 | 248 | 229 | 377 | 2.59e-38 | 137 |
Msa0420680 | AT5G67460.2 | 51.034 | 145 | 60 | 6 | 107 | 242 | 229 | 371 | 1.91e-35 | 130 |
Msa0420680 | AT4G13600.1 | 54.651 | 86 | 39 | 0 | 163 | 248 | 59 | 144 | 2.25e-30 | 113 |
Msa0420680 | AT2G04910.2 | 49.451 | 91 | 45 | 1 | 160 | 249 | 10 | 100 | 2.02e-26 | 99.4 |
Msa0420680 | AT5G35740.1 | 50.575 | 87 | 41 | 2 | 165 | 249 | 30 | 116 | 6.31e-24 | 93.2 |
Msa0420680 | AT2G04910.1 | 50.000 | 84 | 41 | 1 | 160 | 242 | 10 | 93 | 1.52e-23 | 92.4 |
Msa0420680 | AT1G18650.1 | 48.837 | 86 | 44 | 0 | 163 | 248 | 19 | 104 | 3.55e-23 | 93.2 |
Msa0420680 | AT1G18650.2 | 50.000 | 82 | 41 | 0 | 165 | 246 | 21 | 102 | 4.98e-23 | 91.3 |
Msa0420680 | AT2G30933.1 | 44.144 | 111 | 59 | 3 | 142 | 251 | 60 | 168 | 6.58e-23 | 93.6 |
Msa0420680 | AT5G55180.1 | 50.588 | 85 | 41 | 1 | 165 | 248 | 372 | 456 | 9.19e-23 | 96.7 |
Msa0420680 | AT4G26830.2 | 51.765 | 85 | 40 | 1 | 165 | 248 | 371 | 455 | 1.83e-22 | 95.9 |
Msa0420680 | AT4G26830.1 | 51.765 | 85 | 40 | 1 | 165 | 248 | 367 | 451 | 1.92e-22 | 95.9 |
Msa0420680 | AT4G05430.1 | 42.045 | 88 | 50 | 1 | 165 | 251 | 23 | 110 | 5.04e-22 | 89.0 |
Msa0420680 | AT2G05790.1 | 42.105 | 114 | 60 | 2 | 136 | 248 | 360 | 468 | 6.27e-22 | 94.4 |
Msa0420680 | AT1G11820.2 | 48.235 | 85 | 43 | 1 | 165 | 248 | 381 | 465 | 6.72e-22 | 94.7 |
Msa0420680 | AT4G05430.3 | 42.045 | 88 | 50 | 1 | 165 | 251 | 48 | 135 | 8.16e-22 | 89.4 |
Msa0420680 | AT2G30933.2 | 44.118 | 102 | 54 | 3 | 142 | 242 | 60 | 159 | 1.91e-21 | 88.2 |
Msa0420680 | AT2G30933.3 | 44.118 | 102 | 54 | 3 | 142 | 242 | 60 | 159 | 1.91e-21 | 88.2 |
Msa0420680 | AT1G29380.3 | 47.727 | 88 | 44 | 2 | 165 | 251 | 148 | 234 | 2.41e-21 | 90.1 |
Msa0420680 | AT5G61130.1 | 45.349 | 86 | 47 | 0 | 163 | 248 | 19 | 104 | 5.93e-21 | 87.8 |
Msa0420680 | AT5G56590.1 | 45.882 | 85 | 45 | 1 | 165 | 248 | 369 | 453 | 6.00e-21 | 91.7 |
Msa0420680 | AT1G29380.1 | 48.235 | 85 | 42 | 2 | 165 | 248 | 148 | 231 | 1.03e-20 | 89.4 |
Msa0420680 | AT3G13560.4 | 47.126 | 87 | 45 | 1 | 163 | 248 | 360 | 446 | 1.72e-20 | 90.5 |
Msa0420680 | AT3G13560.1 | 47.126 | 87 | 45 | 1 | 163 | 248 | 360 | 446 | 1.72e-20 | 90.5 |
Msa0420680 | AT3G13560.2 | 47.126 | 87 | 45 | 1 | 163 | 248 | 360 | 446 | 1.72e-20 | 90.5 |
Msa0420680 | AT3G13560.5 | 47.126 | 87 | 45 | 1 | 163 | 248 | 360 | 446 | 1.72e-20 | 90.5 |
Msa0420680 | AT3G13560.3 | 47.126 | 87 | 45 | 1 | 163 | 248 | 360 | 446 | 1.72e-20 | 90.5 |
Msa0420680 | AT4G34480.3 | 42.857 | 84 | 48 | 0 | 165 | 248 | 253 | 336 | 4.83e-20 | 88.6 |
Msa0420680 | AT5G55180.2 | 50.633 | 79 | 38 | 1 | 165 | 242 | 372 | 450 | 5.33e-20 | 89.0 |
Msa0420680 | AT4G34480.1 | 42.857 | 84 | 48 | 0 | 165 | 248 | 364 | 447 | 6.62e-20 | 89.0 |
Msa0420680 | AT5G63225.1 | 42.857 | 84 | 48 | 0 | 165 | 248 | 25 | 108 | 7.95e-20 | 82.4 |
Msa0420680 | AT5G24318.3 | 40.698 | 86 | 51 | 0 | 165 | 250 | 233 | 318 | 8.97e-20 | 87.0 |
Msa0420680 | AT5G08000.1 | 48.837 | 86 | 44 | 0 | 163 | 248 | 19 | 104 | 1.08e-19 | 84.3 |
Msa0420680 | AT1G29380.4 | 49.367 | 79 | 38 | 2 | 165 | 242 | 148 | 225 | 1.13e-19 | 85.1 |
Msa0420680 | AT1G29380.2 | 49.367 | 79 | 38 | 2 | 165 | 242 | 148 | 225 | 1.13e-19 | 85.1 |
Msa0420680 | AT4G29360.2 | 45.882 | 85 | 45 | 1 | 165 | 248 | 401 | 485 | 1.60e-19 | 87.8 |
Msa0420680 | AT4G29360.1 | 45.882 | 85 | 45 | 1 | 165 | 248 | 391 | 475 | 1.67e-19 | 87.8 |
Msa0420680 | AT5G63250.1 | 42.697 | 89 | 48 | 1 | 165 | 250 | 42 | 130 | 1.71e-19 | 82.0 |
Msa0420680 | AT5G08000.2 | 48.837 | 86 | 44 | 0 | 163 | 248 | 38 | 123 | 1.89e-19 | 84.0 |
Msa0420680 | AT5G24318.1 | 40.698 | 86 | 51 | 0 | 165 | 250 | 372 | 457 | 2.00e-19 | 87.4 |
Msa0420680 | AT1G66870.1 | 36.111 | 108 | 63 | 2 | 142 | 248 | 8 | 110 | 2.65e-19 | 80.9 |
Msa0420680 | AT2G01630.1 | 42.353 | 85 | 48 | 1 | 165 | 248 | 360 | 444 | 2.87e-19 | 87.0 |
Msa0420680 | AT1G66870.2 | 36.111 | 108 | 63 | 2 | 142 | 248 | 35 | 137 | 3.09e-19 | 81.6 |
Msa0420680 | AT1G11820.3 | 48.101 | 79 | 40 | 1 | 165 | 242 | 381 | 459 | 3.47e-19 | 86.7 |
Msa0420680 | AT1G69295.2 | 50.685 | 73 | 35 | 1 | 162 | 234 | 14 | 85 | 3.54e-19 | 83.6 |
Msa0420680 | AT2G29735.1 | 36.364 | 121 | 67 | 3 | 131 | 249 | 5 | 117 | 4.88e-19 | 80.5 |
Msa0420680 | AT4G05430.2 | 43.038 | 79 | 44 | 1 | 165 | 242 | 48 | 126 | 6.59e-19 | 80.5 |
Msa0420680 | AT1G09460.1 | 47.674 | 86 | 43 | 2 | 165 | 250 | 137 | 220 | 7.48e-19 | 84.7 |
Msa0420680 | AT1G66855.1 | 38.554 | 83 | 50 | 1 | 165 | 246 | 26 | 108 | 1.44e-18 | 79.0 |
Msa0420680 | AT1G69295.1 | 50.000 | 72 | 35 | 1 | 163 | 234 | 19 | 89 | 2.53e-18 | 81.3 |
Msa0420680 | AT4G09462.1 | 37.209 | 86 | 54 | 0 | 165 | 250 | 29 | 114 | 2.82e-18 | 78.2 |
Msa0420680 | AT5G63230.1 | 39.286 | 84 | 51 | 0 | 165 | 248 | 26 | 109 | 3.50e-18 | 78.2 |
Msa0420680 | AT5G63240.1 | 35.849 | 106 | 65 | 1 | 148 | 250 | 23 | 128 | 4.11e-18 | 78.6 |
Msa0420680 | AT4G09465.1 | 31.776 | 107 | 73 | 0 | 144 | 250 | 10 | 116 | 7.87e-18 | 77.4 |
Msa0420680 | AT4G09464.1 | 31.776 | 107 | 73 | 0 | 144 | 250 | 10 | 116 | 8.20e-18 | 77.0 |
Msa0420680 | AT4G09467.1 | 31.776 | 107 | 73 | 0 | 144 | 250 | 10 | 116 | 8.20e-18 | 77.0 |
Msa0420680 | AT1G66852.1 | 41.379 | 87 | 45 | 3 | 165 | 248 | 26 | 109 | 9.81e-18 | 76.6 |
Msa0420680 | AT4G09466.1 | 30.841 | 107 | 74 | 0 | 144 | 250 | 10 | 116 | 1.97e-17 | 76.3 |
Msa0420680 | AT5G24318.2 | 41.250 | 80 | 47 | 0 | 165 | 244 | 372 | 451 | 2.69e-17 | 80.9 |
Msa0420680 | AT2G01630.3 | 43.038 | 79 | 44 | 1 | 165 | 242 | 360 | 438 | 3.20e-17 | 80.9 |
Msa0420680 | AT2G16230.1 | 39.286 | 84 | 51 | 0 | 165 | 248 | 366 | 449 | 3.57e-17 | 80.9 |
Msa0420680 | AT3G55430.1 | 39.024 | 82 | 50 | 0 | 165 | 246 | 366 | 447 | 1.40e-16 | 79.0 |
Msa0420680 | AT4G09090.1 | 30.841 | 107 | 74 | 0 | 144 | 250 | 10 | 116 | 2.01e-16 | 73.6 |
Msa0420680 | AT1G66250.1 | 37.647 | 85 | 52 | 1 | 165 | 248 | 368 | 452 | 7.10e-16 | 77.0 |
Msa0420680 | AT1G13830.2 | 44.444 | 72 | 40 | 0 | 163 | 234 | 33 | 104 | 8.50e-16 | 74.3 |
Msa0420680 | AT1G13830.1 | 44.444 | 72 | 40 | 0 | 163 | 234 | 19 | 90 | 9.82e-16 | 73.9 |
Msa0420680 | AT4G16165.1 | 35.294 | 85 | 54 | 1 | 165 | 248 | 26 | 110 | 1.40e-15 | 71.2 |
Msa0420680 | AT5G53600.1 | 32.692 | 104 | 64 | 2 | 145 | 248 | 14 | 111 | 1.61e-15 | 70.9 |
Msa0420680 | AT1G26450.1 | 44.595 | 74 | 40 | 1 | 163 | 236 | 19 | 91 | 1.68e-15 | 73.2 |
Msa0420680 | AT3G23770.1 | 37.755 | 98 | 60 | 1 | 152 | 248 | 374 | 471 | 6.88e-15 | 73.9 |
Msa0420680 | AT3G07320.1 | 41.860 | 86 | 49 | 1 | 164 | 248 | 370 | 455 | 1.63e-14 | 72.8 |
Msa0420680 | AT5G53610.1 | 40.476 | 84 | 49 | 1 | 165 | 248 | 28 | 110 | 3.21e-14 | 67.4 |
Msa0420680 | AT2G39640.1 | 32.941 | 85 | 57 | 0 | 163 | 247 | 458 | 542 | 4.03e-14 | 72.0 |
Msa0420680 | AT2G39640.1 | 35.366 | 82 | 53 | 0 | 165 | 246 | 359 | 440 | 3.19e-13 | 69.3 |
Msa0420680 | AT2G43670.1 | 35.294 | 85 | 54 | 1 | 165 | 249 | 35 | 118 | 4.80e-14 | 67.4 |
Msa0420680 | AT2G03505.3 | 38.889 | 72 | 44 | 0 | 163 | 234 | 19 | 90 | 3.63e-13 | 64.7 |
Msa0420680 | AT3G58100.1 | 37.079 | 89 | 55 | 1 | 161 | 248 | 37 | 125 | 3.92e-13 | 66.2 |
Msa0420680 | AT2G03505.4 | 38.889 | 72 | 44 | 0 | 163 | 234 | 19 | 90 | 5.03e-13 | 65.9 |
Msa0420680 | AT2G03505.1 | 38.889 | 72 | 44 | 0 | 163 | 234 | 19 | 90 | 5.03e-13 | 65.9 |
Msa0420680 | AT2G03505.2 | 38.889 | 72 | 44 | 0 | 163 | 234 | 19 | 90 | 5.03e-13 | 65.9 |
Msa0420680 | AT3G58100.2 | 37.931 | 87 | 53 | 1 | 161 | 246 | 113 | 199 | 5.08e-13 | 67.4 |
Msa0420680 | AT2G43660.1 | 31.356 | 118 | 80 | 1 | 133 | 249 | 2 | 119 | 4.26e-12 | 62.0 |
Msa0420680 | AT2G42930.1 | 37.209 | 86 | 53 | 1 | 160 | 245 | 35 | 119 | 5.68e-12 | 62.0 |
Msa0420680 | AT2G43660.2 | 29.915 | 117 | 75 | 2 | 140 | 249 | 4 | 120 | 2.17e-11 | 60.1 |
Msa0420680 | AT4G14080.1 | 31.000 | 100 | 68 | 1 | 150 | 248 | 374 | 473 | 5.86e-11 | 62.4 |
Find 82 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATGGACTATGCTTGTGGGTC+TGG | 0.148531 | 3_2:+69361349 | Msa0420680:CDS |
TTAATTAGATGCATTATATT+TGG | 0.230496 | 3_2:+69363112 | Msa0420680:three_prime_UTR |
CTTGATGAATCCATTGGAAT+TGG | 0.263454 | 3_2:-69360706 | None:intergenic |
TGGACTATGCTTGTGGGTCT+GGG | 0.289091 | 3_2:+69361350 | Msa0420680:CDS |
TCCATAGCCAGTTGAATTAT+AGG | 0.302335 | 3_2:-69361331 | None:intergenic |
GATGAGCAATGTTGAATCTA+AGG | 0.322497 | 3_2:-69360738 | None:intergenic |
GGGTTTGGAACAGGTGAATA+AGG | 0.327081 | 3_2:-69361085 | None:intergenic |
TATTTCTAAAATGAACCTTA+TGG | 0.327927 | 3_2:+69363188 | Msa0420680:three_prime_UTR |
AGCCCACCTAAAAGTGTTAT+AGG | 0.340995 | 3_2:+69361199 | Msa0420680:CDS |
ACACCAATGCACAAAATTAG+AGG | 0.343222 | 3_2:-69360679 | None:intergenic |
TCAGATTTAGATTCTTCATA+TGG | 0.344846 | 3_2:+69360998 | Msa0420680:CDS |
TGTAAATCAGTTCAGCCTAA+TGG | 0.349309 | 3_2:+69361379 | Msa0420680:CDS |
CTTATGCATTCAATAGCTAT+TGG | 0.355474 | 3_2:+69361440 | Msa0420680:CDS |
GAGTTTCTTCCATGATTTGA+TGG | 0.359457 | 3_2:-69360933 | None:intergenic |
GGTGGAAGGGGTTGAGAAGA+AGG | 0.373189 | 3_2:-69361025 | None:intergenic |
AAGAAACTCAAATATCAAAA+TGG | 0.376268 | 3_2:+69360947 | Msa0420680:CDS |
AAAACATCATGAGGTGGGTT+TGG | 0.378635 | 3_2:-69361100 | None:intergenic |
CATCTCTAAATATCAAATTA+TGG | 0.386719 | 3_2:-69363229 | None:intergenic |
GTAAATCAGTTCAGCCTAAT+GGG | 0.395511 | 3_2:+69361380 | Msa0420680:CDS |
AGCCACCACAATATGCTATC+TGG | 0.408308 | 3_2:+69361281 | Msa0420680:CDS |
TCCTGATCCTATAATTCAAC+TGG | 0.420616 | 3_2:+69361324 | Msa0420680:CDS |
GATGGGCTTGGAGGTGGTGG+CGG | 0.424976 | 3_2:-69361163 | None:intergenic |
GCCAGTTGAATTATAGGATC+AGG | 0.436233 | 3_2:-69361325 | None:intergenic |
TTTGCAGATGCTATAAATCA+TGG | 0.443939 | 3_2:+69360890 | Msa0420680:intron |
CTGATGGAGAGTAAGAGAAA+TGG | 0.448722 | 3_2:-69360625 | None:intergenic |
GAATAAGGTGGTAGAGAGGT+AGG | 0.451500 | 3_2:-69361070 | None:intergenic |
TCATGAGGTGGGTTTGGAAC+AGG | 0.452737 | 3_2:-69361094 | None:intergenic |
TTGCTATAATACATAGCATT+CGG | 0.460360 | 3_2:+69363025 | Msa0420680:three_prime_UTR |
TCCTATAATTCAACTGGCTA+TGG | 0.461085 | 3_2:+69361330 | Msa0420680:CDS |
TTTGATGGGCTTGGAGGTGG+TGG | 0.461788 | 3_2:-69361166 | None:intergenic |
TGGCTATGGACTATGCTTGT+GGG | 0.470072 | 3_2:+69361344 | Msa0420680:CDS |
GAACTAGACAAAATCAAGCT+AGG | 0.476772 | 3_2:-69363156 | None:intergenic |
GGTGGTGGTGGATAAACAAT+AGG | 0.486021 | 3_2:-69361244 | None:intergenic |
TGATAGTAATACACAAAAGA+AGG | 0.494597 | 3_2:-69363303 | None:intergenic |
TGAATATGAAACCAACCATA+AGG | 0.498667 | 3_2:-69363203 | None:intergenic |
GGCTGGAAGCATATCCCATT+AGG | 0.500978 | 3_2:-69361394 | None:intergenic |
TATTGGCAGAACACTAAGAT+TGG | 0.504275 | 3_2:+69361457 | Msa0420680:CDS |
GCATGTGCCAACACTGTGTT+GGG | 0.505340 | 3_2:-69361415 | None:intergenic |
AGGTGAATAAGGTGGTAGAG+AGG | 0.507925 | 3_2:-69361074 | None:intergenic |
CTGGCTATGGACTATGCTTG+TGG | 0.509897 | 3_2:+69361343 | Msa0420680:CDS |
TCTAAAATGAACCTTATGGT+TGG | 0.510200 | 3_2:+69363192 | Msa0420680:three_prime_UTR |
TGGTGTTAATCCAATTCCAA+TGG | 0.514623 | 3_2:+69360696 | Msa0420680:exon |
ATAAGAAAATACATTGGAAG+AGG | 0.515220 | 3_2:-69363069 | None:intergenic |
GTGCCAACACTGTGTTGGGC+TGG | 0.515870 | 3_2:-69361411 | None:intergenic |
TTATGACTTGAAGGTGGTGG+TGG | 0.522446 | 3_2:-69361256 | None:intergenic |
ATTATAGGATCAGGAACTGT+AGG | 0.522750 | 3_2:-69361316 | None:intergenic |
GGTGGTAGAGAGGTAGGTTG+TGG | 0.528352 | 3_2:-69361064 | None:intergenic |
GGCAGAACACTAAGATTGGT+GGG | 0.533300 | 3_2:+69361461 | Msa0420680:CDS |
TAAGCTCTTGATGAATCCAT+TGG | 0.534192 | 3_2:-69360712 | None:intergenic |
GAAGCTACTCCATCAAATCA+TGG | 0.534607 | 3_2:+69360924 | Msa0420680:CDS |
GGACTATGCTTGTGGGTCTG+GGG | 0.539971 | 3_2:+69361351 | Msa0420680:CDS |
TGCATGGTTTACCACACAAA+GGG | 0.541460 | 3_2:-69360792 | None:intergenic |
AACTAGACAAAATCAAGCTA+GGG | 0.548793 | 3_2:-69363155 | None:intergenic |
GATGCTATAAATCATGGAAG+AGG | 0.563923 | 3_2:+69360896 | Msa0420680:intron |
GGTGGCAAGTATACTTGAGG+TGG | 0.566837 | 3_2:-69361223 | None:intergenic |
TGGCAGAACACTAAGATTGG+TGG | 0.568883 | 3_2:+69361460 | Msa0420680:CDS |
AGCTAGGGAGGATACGATCA+AGG | 0.572146 | 3_2:-69363140 | None:intergenic |
CAAGTGAATTGAAAGGTGGA+AGG | 0.573973 | 3_2:-69361039 | None:intergenic |
AGCATGTGCCAACACTGTGT+TGG | 0.585546 | 3_2:-69361416 | None:intergenic |
GATAGTAATACACAAAAGAA+GGG | 0.595287 | 3_2:-69363302 | None:intergenic |
TGTTGCATAAGAAAATACAT+TGG | 0.601508 | 3_2:-69363075 | None:intergenic |
AAGTGAATTGAAAGGTGGAA+GGG | 0.615025 | 3_2:-69361038 | None:intergenic |
CTTCCAGCCCAACACAGTGT+TGG | 0.616634 | 3_2:+69361408 | Msa0420680:CDS |
TAGACAAAATCAAGCTAGGG+AGG | 0.616936 | 3_2:-69363152 | None:intergenic |
GCAGAACACTAAGATTGGTG+GGG | 0.618966 | 3_2:+69361462 | Msa0420680:CDS |
AGTGAATTGAAAGGTGGAAG+GGG | 0.620889 | 3_2:-69361037 | None:intergenic |
ATAATGCATCTAATTAAGCA+AGG | 0.626292 | 3_2:-69363106 | None:intergenic |
CAGAACACTAAGATTGGTGG+GGG | 0.628305 | 3_2:+69361463 | Msa0420680:CDS |
GAGTGGAAACTAGCATCAAG+AGG | 0.637802 | 3_2:-69360765 | None:intergenic |
GGTGGTGGATAAACAATAGG+TGG | 0.638764 | 3_2:-69361241 | None:intergenic |
TTTGGAACAGGTGAATAAGG+TGG | 0.645722 | 3_2:-69361082 | None:intergenic |
ATAGGTGGCAAGTATACTTG+AGG | 0.650538 | 3_2:-69361226 | None:intergenic |
ATGCATGGTTTACCACACAA+AGG | 0.652538 | 3_2:-69360793 | None:intergenic |
GTGGCAAGTATACTTGAGGT+GGG | 0.653749 | 3_2:-69361222 | None:intergenic |
TGGCGGCGACATTGTAACAG+TGG | 0.658796 | 3_2:-69361146 | None:intergenic |
CTCCATCAGCAAAATCTGTG+AGG | 0.675876 | 3_2:+69360639 | Msa0420680:five_prime_UTR |
CACCAGATAGCATATTGTGG+TGG | 0.680993 | 3_2:-69361283 | None:intergenic |
ACCACACAAAGGGAAAAGAG+TGG | 0.683572 | 3_2:-69360782 | None:intergenic |
ACACACCAGATAGCATATTG+TGG | 0.683997 | 3_2:-69361286 | None:intergenic |
TGTGGTGCAAGTGAATTGAA+AGG | 0.698579 | 3_2:-69361046 | None:intergenic |
GGTGCAAGTGAATTGAAAGG+TGG | 0.701271 | 3_2:-69361043 | None:intergenic |
ACAATATGCTATCTGGTGTG+TGG | 0.720976 | 3_2:+69361288 | Msa0420680:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATAAAATAAATTTATTTTTT+TGG | + | chr3_2:69362204-69362223 | Msa0420680:intron | 0.0% |
!!! | TTTAGTTTTTTATTTAAAAG+AGG | - | chr3_2:69362796-69362815 | None:intergenic | 10.0% |
!! | TTTATCAGCAATTAAAAAAA+AGG | - | chr3_2:69361830-69361849 | None:intergenic | 15.0% |
!!! | ATAAAGGAACTTTTTTTTTT+TGG | + | chr3_2:69361864-69361883 | Msa0420680:intron | 15.0% |
!! | TAATGATAAAATTATATGCA+TGG | + | chr3_2:69362064-69362083 | Msa0420680:intron | 15.0% |
!!! | GTCTTTTTAATTTAAAACTA+TGG | + | chr3_2:69362912-69362931 | Msa0420680:intron | 15.0% |
!! | TTAATTAGATGCATTATATT+TGG | + | chr3_2:69363112-69363131 | Msa0420680:three_prime_UTR | 15.0% |
!! | AAGAAACTCAAATATCAAAA+TGG | + | chr3_2:69360947-69360966 | Msa0420680:CDS | 20.0% |
!!! | TTCAACAAATTTTCATCATT+TGG | + | chr3_2:69360971-69360990 | Msa0420680:CDS | 20.0% |
!!! | CATCACTAAATGATTATTTT+TGG | - | chr3_2:69361789-69361808 | None:intergenic | 20.0% |
!!! | AAATTTTCTCATATGGATAA+AGG | + | chr3_2:69361848-69361867 | Msa0420680:intron | 20.0% |
!!! | TTTTTTTTTGGTACAACATA+TGG | + | chr3_2:69361876-69361895 | Msa0420680:intron | 20.0% |
!!! | TTGGACCATTTATTTTTAAT+CGG | - | chr3_2:69362464-69362483 | None:intergenic | 20.0% |
!! | CCTCAAAAAACAAAAAAAAA+GGG | - | chr3_2:69362620-69362639 | None:intergenic | 20.0% |
!! | ACCTCAAAAAACAAAAAAAA+AGG | - | chr3_2:69362621-69362640 | None:intergenic | 20.0% |
!!! | GTTTTAAATTAAAAAGACGA+CGG | - | chr3_2:69362910-69362929 | None:intergenic | 20.0% |
!!! | TATTTCTAAAATGAACCTTA+TGG | + | chr3_2:69363188-69363207 | Msa0420680:three_prime_UTR | 20.0% |
!! | CATCTCTAAATATCAAATTA+TGG | - | chr3_2:69363232-69363251 | None:intergenic | 20.0% |
! | CATATAATTATATGCATGCA+TGG | - | chr3_2:69360811-69360830 | None:intergenic | 25.0% |
! | TCAGATTTAGATTCTTCATA+TGG | + | chr3_2:69360998-69361017 | Msa0420680:CDS | 25.0% |
! | ACATAATCTGATGTAATCAT+AGG | + | chr3_2:69361662-69361681 | Msa0420680:intron | 25.0% |
!! | GCTGATAAAATTTTCTCATA+TGG | + | chr3_2:69361841-69361860 | Msa0420680:intron | 25.0% |
!! | AACCCTTAATGATATTTTAC+TGG | + | chr3_2:69361939-69361958 | Msa0420680:intron | 25.0% |
! | CACCAGTAAAATATCATTAA+GGG | - | chr3_2:69361944-69361963 | None:intergenic | 25.0% |
! | ACACCAGTAAAATATCATTA+AGG | - | chr3_2:69361945-69361964 | None:intergenic | 25.0% |
!! | TGATATTTTACTGGTGTATT+TGG | + | chr3_2:69361948-69361967 | Msa0420680:intron | 25.0% |
! | AAAATTATATGCATGGACTT+TGG | + | chr3_2:69362071-69362090 | Msa0420680:intron | 25.0% |
! | AGTTGATCTAATAATTACGA+TGG | + | chr3_2:69362119-69362138 | Msa0420680:intron | 25.0% |
! | ACTTAACTAACGGTTAAATA+AGG | - | chr3_2:69362329-69362348 | None:intergenic | 25.0% |
! | ATGTGAAATGACTTAACTAA+CGG | - | chr3_2:69362339-69362358 | None:intergenic | 25.0% |
!!! | ACCATTTATTTTTAATCGGA+CGG | - | chr3_2:69362460-69362479 | None:intergenic | 25.0% |
!! | CAACAGATCATATTTAAGTT+TGG | - | chr3_2:69362527-69362546 | None:intergenic | 25.0% |
!!! | CCCTTTTTTTTTGTTTTTTG+AGG | + | chr3_2:69362617-69362636 | Msa0420680:intron | 25.0% |
! | TTGCTATAATACATAGCATT+CGG | + | chr3_2:69363025-69363044 | Msa0420680:three_prime_UTR | 25.0% |
! | ATAAGAAAATACATTGGAAG+AGG | - | chr3_2:69363072-69363091 | None:intergenic | 25.0% |
! | TGTTGCATAAGAAAATACAT+TGG | - | chr3_2:69363078-69363097 | None:intergenic | 25.0% |
! | ATAATGCATCTAATTAAGCA+AGG | - | chr3_2:69363109-69363128 | None:intergenic | 25.0% |
! | GATAGTAATACACAAAAGAA+GGG | - | chr3_2:69363305-69363324 | None:intergenic | 25.0% |
! | TGATAGTAATACACAAAAGA+AGG | - | chr3_2:69363306-69363325 | None:intergenic | 25.0% |
! | ACTTTAGTGTGTGTAACTTT+TGG | + | chr3_2:69360863-69360882 | Msa0420680:intron | 30.0% |
TTTGCAGATGCTATAAATCA+TGG | + | chr3_2:69360890-69360909 | Msa0420680:intron | 30.0% | |
CTTATGCATTCAATAGCTAT+TGG | + | chr3_2:69361440-69361459 | Msa0420680:CDS | 30.0% | |
TTGGTACAACATATGGATAA+AGG | + | chr3_2:69361883-69361902 | Msa0420680:intron | 30.0% | |
ATACTATATCCACACAACAA+AGG | + | chr3_2:69362362-69362381 | Msa0420680:intron | 30.0% | |
CCAAATGAAAAGAAATCAAG+TGG | - | chr3_2:69362394-69362413 | None:intergenic | 30.0% | |
! | CCACTTGATTTCTTTTCATT+TGG | + | chr3_2:69362391-69362410 | Msa0420680:intron | 30.0% |
ATGCATTCTATGTAGTTACA+AGG | - | chr3_2:69362884-69362903 | None:intergenic | 30.0% | |
AACTAGACAAAATCAAGCTA+GGG | - | chr3_2:69363158-69363177 | None:intergenic | 30.0% | |
! | TCTAAAATGAACCTTATGGT+TGG | + | chr3_2:69363192-69363211 | Msa0420680:three_prime_UTR | 30.0% |
TGAATATGAAACCAACCATA+AGG | - | chr3_2:69363206-69363225 | None:intergenic | 30.0% | |
! | CAACCTCTAATTTTGTGCAT+TGG | + | chr3_2:69360676-69360695 | Msa0420680:five_prime_UTR | 35.0% |
ACACCAATGCACAAAATTAG+AGG | - | chr3_2:69360682-69360701 | None:intergenic | 35.0% | |
! | TGGTGTTAATCCAATTCCAA+TGG | + | chr3_2:69360696-69360715 | Msa0420680:exon | 35.0% |
CTTGATGAATCCATTGGAAT+TGG | - | chr3_2:69360709-69360728 | None:intergenic | 35.0% | |
TAAGCTCTTGATGAATCCAT+TGG | - | chr3_2:69360715-69360734 | None:intergenic | 35.0% | |
GATGAGCAATGTTGAATCTA+AGG | - | chr3_2:69360741-69360760 | None:intergenic | 35.0% | |
GATGCTATAAATCATGGAAG+AGG | + | chr3_2:69360896-69360915 | Msa0420680:intron | 35.0% | |
GAGTTTCTTCCATGATTTGA+TGG | - | chr3_2:69360936-69360955 | None:intergenic | 35.0% | |
AAGTGAATTGAAAGGTGGAA+GGG | - | chr3_2:69361041-69361060 | None:intergenic | 35.0% | |
! | GACATTGTAACAGTGGTTTT+AGG | - | chr3_2:69361142-69361161 | None:intergenic | 35.0% |
! | TTTTTATGACTTGAAGGTGG+TGG | - | chr3_2:69361262-69361281 | None:intergenic | 35.0% |
ATTATAGGATCAGGAACTGT+AGG | - | chr3_2:69361319-69361338 | None:intergenic | 35.0% | |
TCCTGATCCTATAATTCAAC+TGG | + | chr3_2:69361324-69361343 | Msa0420680:CDS | 35.0% | |
TCCTATAATTCAACTGGCTA+TGG | + | chr3_2:69361330-69361349 | Msa0420680:CDS | 35.0% | |
TCCATAGCCAGTTGAATTAT+AGG | - | chr3_2:69361334-69361353 | None:intergenic | 35.0% | |
TGTAAATCAGTTCAGCCTAA+TGG | + | chr3_2:69361379-69361398 | Msa0420680:CDS | 35.0% | |
GTAAATCAGTTCAGCCTAAT+GGG | + | chr3_2:69361380-69361399 | Msa0420680:CDS | 35.0% | |
TATTGGCAGAACACTAAGAT+TGG | + | chr3_2:69361457-69361476 | Msa0420680:CDS | 35.0% | |
! | ACCATCTTTGTTTACCTTTG+TGG | + | chr3_2:69361546-69361565 | Msa0420680:intron | 35.0% |
ACCACAAAGGTAAACAAAGA+TGG | - | chr3_2:69361550-69361569 | None:intergenic | 35.0% | |
AGTCTGTGACTATATGTGTT+CGG | + | chr3_2:69361589-69361608 | Msa0420680:intron | 35.0% | |
TATGAGATTCTTACCGATGT+CGG | - | chr3_2:69361637-69361656 | None:intergenic | 35.0% | |
TTTCACCATATAGTCACCTA+TGG | - | chr3_2:69361759-69361778 | None:intergenic | 35.0% | |
!! | CTTTTCATTTGGAATCCATC+CGG | + | chr3_2:69362402-69362421 | Msa0420680:intron | 35.0% |
!! | TTTTCATTTGGAATCCATCC+GGG | + | chr3_2:69362403-69362422 | Msa0420680:intron | 35.0% |
AAAACCCGAATTCCTAACAT+CGG | + | chr3_2:69362431-69362450 | Msa0420680:intron | 35.0% | |
GCCGTCCGATTAAAAATAAA+TGG | + | chr3_2:69362456-69362475 | Msa0420680:intron | 35.0% | |
!!! | TTTTGAGGTGCACATTTCAT+TGG | + | chr3_2:69362632-69362651 | Msa0420680:intron | 35.0% |
CCACATACACATATTCACAA+CGG | + | chr3_2:69362703-69362722 | Msa0420680:intron | 35.0% | |
GAATCTAGATCGAACAATGT+AGG | - | chr3_2:69362833-69362852 | None:intergenic | 35.0% | |
TAACCTGCGAAATAAATCGT+GGG | - | chr3_2:69362969-69362988 | None:intergenic | 35.0% | |
ATAACCTGCGAAATAAATCG+TGG | - | chr3_2:69362970-69362989 | None:intergenic | 35.0% | |
! | TGGAAGAGGTTTTCAATCTT+TGG | - | chr3_2:69363058-69363077 | None:intergenic | 35.0% |
GAACTAGACAAAATCAAGCT+AGG | - | chr3_2:69363159-69363178 | None:intergenic | 35.0% | |
CTGATGGAGAGTAAGAGAAA+TGG | - | chr3_2:69360628-69360647 | None:intergenic | 40.0% | |
! | ATCCTCACAGATTTTGCTGA+TGG | - | chr3_2:69360644-69360663 | None:intergenic | 40.0% |
TGCATGGTTTACCACACAAA+GGG | - | chr3_2:69360795-69360814 | None:intergenic | 40.0% | |
ATGCATGGTTTACCACACAA+AGG | - | chr3_2:69360796-69360815 | None:intergenic | 40.0% | |
GAAGCTACTCCATCAAATCA+TGG | + | chr3_2:69360924-69360943 | Msa0420680:CDS | 40.0% | |
AGTGAATTGAAAGGTGGAAG+GGG | - | chr3_2:69361040-69361059 | None:intergenic | 40.0% | |
CAAGTGAATTGAAAGGTGGA+AGG | - | chr3_2:69361042-69361061 | None:intergenic | 40.0% | |
TGTGGTGCAAGTGAATTGAA+AGG | - | chr3_2:69361049-69361068 | None:intergenic | 40.0% | |
! | TTTGGAACAGGTGAATAAGG+TGG | - | chr3_2:69361085-69361104 | None:intergenic | 40.0% |
! | AAAACATCATGAGGTGGGTT+TGG | - | chr3_2:69361103-69361122 | None:intergenic | 40.0% |
! | ACCCACCTCATGATGTTTTT+AGG | + | chr3_2:69361104-69361123 | Msa0420680:CDS | 40.0% |
GCCTAAAAACATCATGAGGT+GGG | - | chr3_2:69361108-69361127 | None:intergenic | 40.0% | |
!!! | GTAACAGTGGTTTTAGGACT+TGG | - | chr3_2:69361136-69361155 | None:intergenic | 40.0% |
!!! | GGCTTGGAACATGTTTTGAT+GGG | - | chr3_2:69361183-69361202 | None:intergenic | 40.0% |
!! | ATAACACTTTTAGGTGGGCT+TGG | - | chr3_2:69361199-69361218 | None:intergenic | 40.0% |
!! | AGCCCACCTAAAAGTGTTAT+AGG | + | chr3_2:69361199-69361218 | Msa0420680:CDS | 40.0% |
!! | GGCCTATAACACTTTTAGGT+GGG | - | chr3_2:69361204-69361223 | None:intergenic | 40.0% |
ATAGGTGGCAAGTATACTTG+AGG | - | chr3_2:69361229-69361248 | None:intergenic | 40.0% | |
! | GGCTTTTTATGACTTGAAGG+TGG | - | chr3_2:69361265-69361284 | None:intergenic | 40.0% |
! | GGTGGCTTTTTATGACTTGA+AGG | - | chr3_2:69361268-69361287 | None:intergenic | 40.0% |
ACACACCAGATAGCATATTG+TGG | - | chr3_2:69361289-69361308 | None:intergenic | 40.0% | |
ACAATATGCTATCTGGTGTG+TGG | + | chr3_2:69361288-69361307 | Msa0420680:CDS | 40.0% | |
GCCAGTTGAATTATAGGATC+AGG | - | chr3_2:69361328-69361347 | None:intergenic | 40.0% | |
! | GATGGTAGTGCAAACTTACT+TGG | - | chr3_2:69361532-69361551 | None:intergenic | 40.0% |
ACAAATGATGCACACCACAA+AGG | - | chr3_2:69361563-69361582 | None:intergenic | 40.0% | |
ATATGTGTTCGGACACGATA+CGG | + | chr3_2:69361600-69361619 | Msa0420680:intron | 40.0% | |
AAAAAAGGGATCAGACATCC+TGG | - | chr3_2:69362606-69362625 | None:intergenic | 40.0% | |
CCGTTGTGAATATGTGTATG+TGG | - | chr3_2:69362706-69362725 | None:intergenic | 40.0% | |
ATCGAACAATGTAGGTTTCG+AGG | - | chr3_2:69362825-69362844 | None:intergenic | 40.0% | |
AGGATTCACTTTCACGACAT+AGG | - | chr3_2:69362864-69362883 | None:intergenic | 40.0% | |
CGAAATAAATCGTGGGTTTG+AGG | - | chr3_2:69362962-69362981 | None:intergenic | 40.0% | |
AAACCCACGATTTATTTCGC+AGG | + | chr3_2:69362963-69362982 | Msa0420680:intron | 40.0% | |
TAGACAAAATCAAGCTAGGG+AGG | - | chr3_2:69363155-69363174 | None:intergenic | 40.0% | |
CTCCATCAGCAAAATCTGTG+AGG | + | chr3_2:69360639-69360658 | Msa0420680:five_prime_UTR | 45.0% | |
GAGTGGAAACTAGCATCAAG+AGG | - | chr3_2:69360768-69360787 | None:intergenic | 45.0% | |
! | TCCACTCTTTTCCCTTTGTG+TGG | + | chr3_2:69360781-69360800 | Msa0420680:CDS | 45.0% |
ACCACACAAAGGGAAAAGAG+TGG | - | chr3_2:69360785-69360804 | None:intergenic | 45.0% | |
GGTGCAAGTGAATTGAAAGG+TGG | - | chr3_2:69361046-69361065 | None:intergenic | 45.0% | |
GAATAAGGTGGTAGAGAGGT+AGG | - | chr3_2:69361073-69361092 | None:intergenic | 45.0% | |
AGGTGAATAAGGTGGTAGAG+AGG | - | chr3_2:69361077-69361096 | None:intergenic | 45.0% | |
! | GGGTTTGGAACAGGTGAATA+AGG | - | chr3_2:69361088-69361107 | None:intergenic | 45.0% |
GGCCTAAAAACATCATGAGG+TGG | - | chr3_2:69361109-69361128 | None:intergenic | 45.0% | |
GGTGGCCTAAAAACATCATG+AGG | - | chr3_2:69361112-69361131 | None:intergenic | 45.0% | |
!!! | ACAGTGGTTTTAGGACTTGG+TGG | - | chr3_2:69361133-69361152 | None:intergenic | 45.0% |
!!! | ACATGTTTTGATGGGCTTGG+AGG | - | chr3_2:69361175-69361194 | None:intergenic | 45.0% |
!!! | GGAACATGTTTTGATGGGCT+TGG | - | chr3_2:69361178-69361197 | None:intergenic | 45.0% |
!! | GGGCTTGGAACATGTTTTGA+TGG | - | chr3_2:69361184-69361203 | None:intergenic | 45.0% |
! | GGGCCTATAACACTTTTAGG+TGG | - | chr3_2:69361205-69361224 | None:intergenic | 45.0% |
! | GGTGGGCCTATAACACTTTT+AGG | - | chr3_2:69361208-69361227 | None:intergenic | 45.0% |
GTGGCAAGTATACTTGAGGT+GGG | - | chr3_2:69361225-69361244 | None:intergenic | 45.0% | |
!! | GGTGGTGGATAAACAATAGG+TGG | - | chr3_2:69361244-69361263 | None:intergenic | 45.0% |
!! | GGTGGTGGTGGATAAACAAT+AGG | - | chr3_2:69361247-69361266 | None:intergenic | 45.0% |
! | TTATGACTTGAAGGTGGTGG+TGG | - | chr3_2:69361259-69361278 | None:intergenic | 45.0% |
AGCCACCACAATATGCTATC+TGG | + | chr3_2:69361281-69361300 | Msa0420680:CDS | 45.0% | |
CACCAGATAGCATATTGTGG+TGG | - | chr3_2:69361286-69361305 | None:intergenic | 45.0% | |
! | TGGCTATGGACTATGCTTGT+GGG | + | chr3_2:69361344-69361363 | Msa0420680:CDS | 45.0% |
TGGCAGAACACTAAGATTGG+TGG | + | chr3_2:69361460-69361479 | Msa0420680:CDS | 45.0% | |
GGCAGAACACTAAGATTGGT+GGG | + | chr3_2:69361461-69361480 | Msa0420680:CDS | 45.0% | |
GCAGAACACTAAGATTGGTG+GGG | + | chr3_2:69361462-69361481 | Msa0420680:CDS | 45.0% | |
CAGAACACTAAGATTGGTGG+GGG | + | chr3_2:69361463-69361482 | Msa0420680:CDS | 45.0% | |
! | TCCTTGGATTAGGTGTGTTC+CGG | - | chr3_2:69361725-69361744 | None:intergenic | 45.0% |
GCACAAACACTCCTTGGATT+AGG | - | chr3_2:69361735-69361754 | None:intergenic | 45.0% | |
TATGGAGCACAAACACTCCT+TGG | - | chr3_2:69361741-69361760 | None:intergenic | 45.0% | |
!! | AAGGAGTGTTTGTGCTCCAT+AGG | + | chr3_2:69361740-69361759 | Msa0420680:intron | 45.0% |
GTGCTCCATAGGTGACTATA+TGG | + | chr3_2:69361751-69361770 | Msa0420680:intron | 45.0% | |
! | TGGCATATGCCTTTGTTGTG+TGG | - | chr3_2:69362374-69362393 | None:intergenic | 45.0% |
!! | GAATTCGGGTTTTCTCTACC+CGG | - | chr3_2:69362424-69362443 | None:intergenic | 45.0% |
GCTACCGATGTTAGGAATTC+GGG | - | chr3_2:69362438-69362457 | None:intergenic | 45.0% | |
GGCTACCGATGTTAGGAATT+CGG | - | chr3_2:69362439-69362458 | None:intergenic | 45.0% | |
ATCAGACATCCTGGTACTCA+GGG | - | chr3_2:69362597-69362616 | None:intergenic | 45.0% | |
CATTTCATTGGCACACCTTG+TGG | + | chr3_2:69362644-69362663 | Msa0420680:intron | 45.0% | |
CGCGTGAATCTAATACCACA+AGG | - | chr3_2:69362662-69362681 | None:intergenic | 45.0% | |
!! | TTCACAACGGCGTTGACTAA+TGG | + | chr3_2:69362716-69362735 | Msa0420680:intron | 45.0% |
!!! | TATTTTATTATAATATTTAG+TGG | - | chr3_2:69362162-69362181 | None:intergenic | 5.0% |
!!! | AATAAAATAATTTATTCTTT+TGG | + | chr3_2:69362173-69362192 | Msa0420680:intron | 5.0% |
!! | AATTAAAATATATATTTGTT+TGG | - | chr3_2:69362483-69362502 | None:intergenic | 5.0% |
! | TCATGAGGTGGGTTTGGAAC+AGG | - | chr3_2:69361097-69361116 | None:intergenic | 50.0% |
!!! | GTGGTTTTAGGACTTGGTGG+TGG | - | chr3_2:69361130-69361149 | None:intergenic | 50.0% |
!!! | TGTTTTGATGGGCTTGGAGG+TGG | - | chr3_2:69361172-69361191 | None:intergenic | 50.0% |
GGTGGCAAGTATACTTGAGG+TGG | - | chr3_2:69361226-69361245 | None:intergenic | 50.0% | |
! | CTGGCTATGGACTATGCTTG+TGG | + | chr3_2:69361343-69361362 | Msa0420680:CDS | 50.0% |
! | ATGGACTATGCTTGTGGGTC+TGG | + | chr3_2:69361349-69361368 | Msa0420680:CDS | 50.0% |
TGGACTATGCTTGTGGGTCT+GGG | + | chr3_2:69361350-69361369 | Msa0420680:CDS | 50.0% | |
! | GGCTGGAAGCATATCCCATT+AGG | - | chr3_2:69361397-69361416 | None:intergenic | 50.0% |
GCATGTGCCAACACTGTGTT+GGG | - | chr3_2:69361418-69361437 | None:intergenic | 50.0% | |
AGCATGTGCCAACACTGTGT+TGG | - | chr3_2:69361419-69361438 | None:intergenic | 50.0% | |
GATTAGGTGTGTTCCGGTGT+CGG | - | chr3_2:69361719-69361738 | None:intergenic | 50.0% | |
ACCGGAACACACCTAATCCA+AGG | + | chr3_2:69361721-69361740 | Msa0420680:intron | 50.0% | |
GATCAGACATCCTGGTACTC+AGG | - | chr3_2:69362598-69362617 | None:intergenic | 50.0% | |
AGCTAGGGAGGATACGATCA+AGG | - | chr3_2:69363143-69363162 | None:intergenic | 50.0% | |
GGTGGAAGGGGTTGAGAAGA+AGG | - | chr3_2:69361028-69361047 | None:intergenic | 55.0% | |
GGTGGTAGAGAGGTAGGTTG+TGG | - | chr3_2:69361067-69361086 | None:intergenic | 55.0% | |
TGGCGGCGACATTGTAACAG+TGG | - | chr3_2:69361149-69361168 | None:intergenic | 55.0% | |
!! | TTTGATGGGCTTGGAGGTGG+TGG | - | chr3_2:69361169-69361188 | None:intergenic | 55.0% |
GGACTATGCTTGTGGGTCTG+GGG | + | chr3_2:69361351-69361370 | Msa0420680:CDS | 55.0% | |
CTTCCAGCCCAACACAGTGT+TGG | + | chr3_2:69361408-69361427 | Msa0420680:CDS | 55.0% | |
!!! | GGTGGGGGCACTTGTGATTT+TGG | + | chr3_2:69361478-69361497 | Msa0420680:CDS | 55.0% |
!!! | GGGGGCACTTGTGATTTTGG+TGG | + | chr3_2:69361481-69361500 | Msa0420680:CDS | 55.0% |
! | TCGGGTTTTCTCTACCCGGA+TGG | - | chr3_2:69362420-69362439 | None:intergenic | 55.0% |
ATCGGACGGCTACCGATGTT+AGG | - | chr3_2:69362446-69362465 | None:intergenic | 55.0% | |
TGTGTGCTTCCCTGAGTACC+AGG | + | chr3_2:69362585-69362604 | Msa0420680:intron | 55.0% | |
GTGCCAACACTGTGTTGGGC+TGG | - | chr3_2:69361414-69361433 | None:intergenic | 60.0% | |
GGACACTGACACGCCGACAT+CGG | + | chr3_2:69361621-69361640 | Msa0420680:intron | 60.0% | |
!! | CACTGACTCGTGTCCGACAC+CGG | + | chr3_2:69361703-69361722 | Msa0420680:intron | 60.0% |
! | GATGGGCTTGGAGGTGGTGG+CGG | - | chr3_2:69361166-69361185 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 69360613 | 69363341 | 69360613 | ID=Msa0420680;Name=Msa0420680 |
chr3_2 | mRNA | 69360613 | 69363341 | 69360613 | ID=Msa0420680-mRNA-1;Parent=Msa0420680;Name=Msa0420680-mRNA-1;_AED=0.03;_eAED=0.03;_QI=102|1|1|1|0.5|0.66|3|325|251 |
chr3_2 | exon | 69360613 | 69360802 | 69360613 | ID=Msa0420680-mRNA-1:exon:16462;Parent=Msa0420680-mRNA-1 |
chr3_2 | exon | 69360897 | 69361532 | 69360897 | ID=Msa0420680-mRNA-1:exon:16463;Parent=Msa0420680-mRNA-1 |
chr3_2 | exon | 69362985 | 69363341 | 69362985 | ID=Msa0420680-mRNA-1:exon:16464;Parent=Msa0420680-mRNA-1 |
chr3_2 | five_prime_UTR | 69360613 | 69360714 | 69360613 | ID=Msa0420680-mRNA-1:five_prime_utr;Parent=Msa0420680-mRNA-1 |
chr3_2 | CDS | 69360715 | 69360802 | 69360715 | ID=Msa0420680-mRNA-1:cds;Parent=Msa0420680-mRNA-1 |
chr3_2 | CDS | 69360897 | 69361532 | 69360897 | ID=Msa0420680-mRNA-1:cds;Parent=Msa0420680-mRNA-1 |
chr3_2 | CDS | 69362985 | 69363016 | 69362985 | ID=Msa0420680-mRNA-1:cds;Parent=Msa0420680-mRNA-1 |
chr3_2 | three_prime_UTR | 69363017 | 69363341 | 69363017 | ID=Msa0420680-mRNA-1:three_prime_utr;Parent=Msa0420680-mRNA-1 |
Gene Sequence |
Protein sequence |