AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0134930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134930 MtrunA17_Chr1g0205531 94.928 414 11 3 1 413 1 405 0.0 796
Msa0134930 MtrunA17_Chr3g0131581 30.198 202 127 4 12 208 44 236 5.13e-22 95.1
Msa0134930 MtrunA17_Chr1g0155071 29.293 198 133 4 9 203 13 206 2.59e-20 90.5
Msa0134930 MtrunA17_Chr8g0385691 27.778 198 137 3 12 208 24 216 3.69e-20 89.4
Msa0134930 MtrunA17_Chr8g0385681 26.471 204 144 3 6 208 21 219 2.26e-19 87.0
Msa0134930 MtrunA17_Chr3g0115591 28.856 201 136 3 8 207 21 215 3.28e-19 87.8
Msa0134930 MtrunA17_Chr5g0425421 27.586 203 138 4 7 207 17 212 9.50e-19 86.7
Msa0134930 MtrunA17_Chr7g0254621 28.718 195 132 3 10 203 18 206 1.04e-17 83.6
Msa0134930 MtrunA17_Chr8g0373391 26.984 189 119 5 28 207 32 210 7.58e-15 74.7
Msa0134930 MtrunA17_Chr1g0155521 27.320 194 111 5 38 207 109 296 6.91e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134930 AT1G05370.1 63.256 430 128 11 1 413 1 417 1.02e-177 502
Msa0134930 AT3G22410.1 60.714 420 138 13 1 413 1 400 7.72e-164 466
Msa0134930 AT4G08690.2 31.795 195 126 3 10 203 17 205 1.01e-22 97.8
Msa0134930 AT4G08690.1 31.795 195 126 3 10 203 17 205 1.01e-22 97.8
Msa0134930 AT4G08690.3 31.795 195 126 3 10 203 17 205 1.01e-22 97.8
Msa0134930 AT1G75170.2 32.020 203 130 5 9 207 13 211 1.07e-22 97.8
Msa0134930 AT1G75170.1 32.020 203 130 5 9 207 13 211 1.07e-22 97.8
Msa0134930 AT1G22180.2 31.492 181 120 2 28 207 35 212 1.59e-22 97.8
Msa0134930 AT1G22180.4 31.492 181 120 2 28 207 35 212 1.59e-22 97.8
Msa0134930 AT1G01630.1 25.962 208 147 4 3 208 17 219 3.81e-17 81.3
Msa0134930 AT4G36640.1 28.713 202 139 4 8 207 10 208 4.81e-16 78.6
Msa0134930 AT4G36640.3 28.713 202 139 4 8 207 10 208 4.81e-16 78.6
Msa0134930 AT1G22180.3 28.859 149 102 2 60 207 2 147 2.88e-13 69.7
Msa0134930 AT1G22180.1 28.859 149 102 2 60 207 2 147 2.88e-13 69.7
Msa0134930 AT5G63060.1 27.389 157 112 2 45 200 78 233 1.44e-11 65.1
Msa0134930 AT5G63060.2 27.389 157 112 2 45 200 43 198 2.51e-11 63.5

Find 119 sgRNAs with CRISPR-Local

Find 482 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCATTCATATGATATTTA+AGG 0.120240 1_3:-66483808 Msa0134930:five_prime_UTR
CTCTCTCTCTGCTGAGTTAT+TGG 0.149617 1_3:-66483843 Msa0134930:five_prime_UTR
ACACGAGTGTACTTGAAAAT+TGG 0.259531 1_3:+66476616 None:intergenic
AACTAAGAGCTTGTCTTTCA+TGG 0.260163 1_3:-66483442 Msa0134930:CDS
AAATATCATATGAATGAATA+AGG 0.260705 1_3:+66483812 None:intergenic
TGTGTGTATGCTTGGTAATT+TGG 0.270416 1_3:-66476596 Msa0134930:three_prime_UTR
TAGCAGTTTCCTTGTCTTTG+AGG 0.282102 1_3:+66483681 None:intergenic
AAGGTTCTTCACTCGTTTAT+TGG 0.290731 1_3:-66479177 Msa0134930:CDS
AGGGATGCTGCTGCTGGGGA+GGG 0.322448 1_3:+66477193 None:intergenic
TGCTGCTGGGGAGGGGCTAG+TGG 0.343270 1_3:+66477201 None:intergenic
GGTGTAAGGGATGCTGCTGC+TGG 0.346849 1_3:+66477187 None:intergenic
CCATTGATGGTTCGAAATCT+AGG 0.348472 1_3:+66477416 None:intergenic
TGGAGAGAAAGCATTGTTAC+TGG 0.366079 1_3:-66483422 Msa0134930:intron
AATAATAATAATATATGTAC+TGG 0.372895 1_3:+66476716 None:intergenic
TGATGAATCCAGACCTGTTT+TGG 0.373995 1_3:-66479511 Msa0134930:intron
ATAATAAAACTTACCAAAAC+AGG 0.377861 1_3:+66479498 None:intergenic
CGTATGATGAAATGGTTTAT+AGG 0.382044 1_3:-66476922 Msa0134930:CDS
TGCTGGCTGGTGGGCCCAGT+GGG 0.383306 1_3:+66477119 None:intergenic
CGTATGTGAAATTCTATAGA+AGG 0.391586 1_3:-66476946 Msa0134930:CDS
AAGGGATGCTGCTGCTGGGG+AGG 0.394495 1_3:+66477192 None:intergenic
CCCAGTGGGTTACGTGCTAT+TGG 0.399472 1_3:+66477133 None:intergenic
CTCTGCGGCAGTGGTGTTGA+AGG 0.404669 1_3:+66477082 None:intergenic
AAGTCGTTGTAGTCCATTGA+TGG 0.407526 1_3:+66477403 None:intergenic
GGGATGCTGCTGCTGGGGAG+GGG 0.414752 1_3:+66477194 None:intergenic
AACCCCTCTCACTGTCAAAC+AGG 0.415234 1_3:-66483624 Msa0134930:intron
TGGAATAATAGTTCTCTTGT+TGG 0.416521 1_3:-66483767 Msa0134930:five_prime_UTR
ATCTGAAGGGTTGGCTTATG+TGG 0.418745 1_3:-66479544 Msa0134930:CDS
AACCCCTTCCTGCTGGCTGG+TGG 0.418815 1_3:+66477109 None:intergenic
TATCATATCATATCATGAAT+TGG 0.420109 1_3:-66476667 Msa0134930:three_prime_UTR
GGGGCTAGTGGGTCCTACTT+TGG 0.420775 1_3:+66477213 None:intergenic
TGGATTTATGAACTTGTTGT+TGG 0.425772 1_3:-66478496 Msa0134930:CDS
ATCTGAGGGATGAGGCTCTT+GGG 0.427015 1_3:+66477371 None:intergenic
GCTGCTGGGGAGGGGCTAGT+GGG 0.429966 1_3:+66477202 None:intergenic
AACAACCCCTTCCTGCTGGC+TGG 0.440949 1_3:+66477106 None:intergenic
ACCCCTTCCTGCTGGCTGGT+GGG 0.442147 1_3:+66477110 None:intergenic
GGCCCACCAGCCAGCAGGAA+GGG 0.443514 1_3:-66477112 Msa0134930:CDS
AGCGAGCGTTGAGTGGTGTA+AGG 0.447735 1_3:+66477173 None:intergenic
TAGAAGGGCGTATGATGAAA+TGG 0.454431 1_3:-66476930 Msa0134930:CDS
CCTAGATTTCGAACCATCAA+TGG 0.454461 1_3:-66477416 Msa0134930:CDS
GTGTAAGGGATGCTGCTGCT+GGG 0.473847 1_3:+66477188 None:intergenic
GCTAGTGGGTCCTACTTTGG+AGG 0.478380 1_3:+66477216 None:intergenic
GCTGTCACTCTCTGCGGCAG+TGG 0.479497 1_3:+66477073 None:intergenic
ACCAATAGCACGTAACCCAC+TGG 0.480055 1_3:-66477134 Msa0134930:CDS
GAAGGGTTGGCTTATGTGGC+TGG 0.480517 1_3:-66479540 Msa0134930:CDS
TGTAAGGGATGCTGCTGCTG+GGG 0.481810 1_3:+66477189 None:intergenic
AAAACTTACCAAAACAGGTC+TGG 0.482409 1_3:+66479503 None:intergenic
GGATTTATGAACTTGTTGTT+GGG 0.483181 1_3:-66478495 Msa0134930:CDS
AATCTGAGGGATGAGGCTCT+TGG 0.483672 1_3:+66477370 None:intergenic
ATTGTGGGTGAGTACTATCC+AGG 0.486719 1_3:-66478462 Msa0134930:CDS
CACTGGGCCCACCAGCCAGC+AGG 0.490128 1_3:-66477117 Msa0134930:CDS
AATGCTTTGCTTAACCGTCC+TGG 0.493604 1_3:+66478444 None:intergenic
TTGGGAGCATTGAAAATTGT+GGG 0.494434 1_3:-66478477 Msa0134930:CDS
CTGCTGGCTGGTGGGCCCAG+TGG 0.496285 1_3:+66477118 None:intergenic
TGTTGTCTCCTCCTAGGCTT+AGG 0.500621 1_3:+66477245 None:intergenic
GGCGTCGTTTCTTCAATCTC+CGG 0.503298 1_3:-66477032 Msa0134930:CDS
GTTGGGAGCATTGAAAATTG+TGG 0.506561 1_3:-66478478 Msa0134930:CDS
TTCTCAGCTGAATTATCTGA+AGG 0.510130 1_3:-66479558 Msa0134930:CDS
TGATTAGAAACGCTGAGAAA+CGG 0.511572 1_3:+66476823 None:intergenic
GTAACTATGCTTGTGTGAAA+CGG 0.512111 1_3:-66483508 Msa0134930:CDS
AGCTGAATTATCTGAAGGGT+TGG 0.514458 1_3:-66479553 Msa0134930:CDS
AGGGAACAACCCCTTCCTGC+TGG 0.515575 1_3:+66477102 None:intergenic
GCCCACCAGCCAGCAGGAAG+GGG 0.520539 1_3:-66477111 Msa0134930:CDS
ATTGGCTTTCACAATGGAGG+TGG 0.523186 1_3:-66479159 Msa0134930:CDS
GAGTGGACTTACTTGCATCT+AGG 0.525342 1_3:+66479093 None:intergenic
CATTGATGGTTCGAAATCTA+GGG 0.533344 1_3:+66477417 None:intergenic
GATAATGTGAAGGTGGAAAG+AGG 0.533969 1_3:-66476986 Msa0134930:CDS
ATGACGTGTTGTCTCCTCCT+AGG 0.536999 1_3:+66477239 None:intergenic
TACACTCGTGTGTGTATGCT+TGG 0.545944 1_3:-66476604 Msa0134930:three_prime_UTR
TCGTTTATTGGCTTTCACAA+TGG 0.546938 1_3:-66479165 Msa0134930:CDS
TGTACCTGTTTGACAGTGAG+AGG 0.549753 1_3:+66483620 None:intergenic
CCTCCTAGGCTTAGGTACCA+TGG 0.550873 1_3:+66477253 None:intergenic
GAGGGATGAGGCTCTTGGGT+AGG 0.552830 1_3:+66477375 None:intergenic
GGGTTGATGGGTCGAATCTG+AGG 0.558790 1_3:+66477356 None:intergenic
TTTATTGGCTTTCACAATGG+AGG 0.560338 1_3:-66479162 Msa0134930:CDS
GGTTGCGTGAAACAGAAGCT+TGG 0.560446 1_3:-66483787 Msa0134930:five_prime_UTR
GGGCCCACCAGCCAGCAGGA+AGG 0.561599 1_3:-66477113 Msa0134930:CDS
AGAGAGTGACAGCTCCTCAC+CGG 0.572658 1_3:-66477063 Msa0134930:CDS
TACCTGTTTGACAGTGAGAG+GGG 0.572972 1_3:+66483622 None:intergenic
CTAAAATCAACGGCTAAGAT+CGG 0.574648 1_3:-66477334 Msa0134930:CDS
AACTCGACTCACTCAAACCA+TGG 0.579927 1_3:-66477270 Msa0134930:CDS
CCAATAGCACGTAACCCACT+GGG 0.581169 1_3:-66477133 Msa0134930:CDS
AAACGGTTTCTGAAAGTGAA+AGG 0.582881 1_3:-66483491 Msa0134930:CDS
GAAACGACGCCGTTGTACTC+CGG 0.585788 1_3:+66477044 None:intergenic
TAGAGACTAATCCACCAAGT+GGG 0.588815 1_3:+66476885 None:intergenic
TCTGATAGTCTTGTTTCATG+CGG 0.591599 1_3:+66479330 None:intergenic
TGATGAAGTTGAGTTGATTG+CGG 0.591807 1_3:+66476776 None:intergenic
TCTGCGGCAGTGGTGTTGAA+GGG 0.591949 1_3:+66477083 None:intergenic
GAGAGTGAGCGAGCGTTGAG+TGG 0.592294 1_3:+66477166 None:intergenic
GTACCTGTTTGACAGTGAGA+GGG 0.593416 1_3:+66483621 None:intergenic
CCATGGTACCTAAGCCTAGG+AGG 0.598899 1_3:-66477253 Msa0134930:CDS
CCCATCAACCCTAAAATCAA+CGG 0.604104 1_3:-66477344 Msa0134930:CDS
AACACGTCATCCTCCAAAGT+AGG 0.605407 1_3:-66477226 Msa0134930:CDS
ACGTGCTATTGGTGAAGCGA+AGG 0.605710 1_3:+66477144 None:intergenic
AGAGACTAATCCACCAAGTG+GGG 0.606305 1_3:+66476886 None:intergenic
AAACCATGGTACCTAAGCCT+AGG 0.608161 1_3:-66477256 Msa0134930:CDS
TCTCAGCTGAATTATCTGAA+GGG 0.608948 1_3:-66479557 Msa0134930:CDS
TCACATTATCCCTATCCCGC+CGG 0.611014 1_3:+66476999 None:intergenic
GGTTGATGGGTCGAATCTGA+GGG 0.612135 1_3:+66477357 None:intergenic
ATGGTTTGAGTGAGTCGAGT+TGG 0.618278 1_3:+66477272 None:intergenic
GGATAGGGATAATGTGAAGG+TGG 0.622484 1_3:-66476993 Msa0134930:CDS
CATGTTGATAGCTCAACGAA+TGG 0.624312 1_3:+66477457 None:intergenic
GTATGTGAAATTCTATAGAA+GGG 0.624349 1_3:-66476945 Msa0134930:CDS
TGGGTCGAATCTGAGGGATG+AGG 0.634099 1_3:+66477363 None:intergenic
AAACGGAAAGGTGAGTGTGA+CGG 0.648731 1_3:+66476840 None:intergenic
GCGGGATAGGGATAATGTGA+AGG 0.650440 1_3:-66476996 Msa0134930:CDS
ATAATAATAATATATGTACT+GGG 0.651044 1_3:+66476717 None:intergenic
ACTTGAACTCCTCAAAGACA+AGG 0.655023 1_3:-66483690 Msa0134930:CDS
GTGTGACGGCGTCTAATATG+AGG 0.655901 1_3:+66476854 None:intergenic
AGCTCCTCACCGGAGTACAA+CGG 0.657216 1_3:-66477053 Msa0134930:CDS
AGAAACGCTGAGAAACGGAA+AGG 0.658877 1_3:+66476828 None:intergenic
GCGAGCGTTGAGTGGTGTAA+GGG 0.663009 1_3:+66477174 None:intergenic
GAGACTAATCCACCAAGTGG+GGG 0.677099 1_3:+66476887 None:intergenic
TGAGGAGCTGTCACTCTCTG+CGG 0.688210 1_3:+66477067 None:intergenic
TGGTTTATAGGTCAAAGATG+AGG 0.693083 1_3:-66476910 Msa0134930:CDS
GACGCCGTTGTACTCCGGTG+AGG 0.706939 1_3:+66477049 None:intergenic
ATAGAGACTAATCCACCAAG+TGG 0.711384 1_3:+66476884 None:intergenic
TGGGTGAGTACTATCCAGGA+CGG 0.714746 1_3:-66478458 Msa0134930:CDS
GACTGTGAAGGAGAAGCGTG+AGG 0.721537 1_3:+66477300 None:intergenic
GAGTTGGTGTGAGACTGTGA+AGG 0.737605 1_3:+66477288 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGATCTTATTTTAAAAATA+TGG + chr1_3:66479581-66479600 None:intergenic 10.0%
!! ATCTTAAACAAAATAAAATT+AGG + chr1_3:66480488-66480507 Msa0134940:intron 10.0%
!!! AAAATTTTAATTAAACTCAA+GGG + chr1_3:66480611-66480630 Msa0134940:intron 10.0%
!!! AAAAATTTTAATTAAACTCA+AGG + chr1_3:66480612-66480631 Msa0134940:intron 10.0%
!!! AAAATAATCATTTTTAATGA+TGG - chr1_3:66480833-66480852 Msa0134930:intron 10.0%
!!! AAATAATCATTTTTAATGAT+GGG - chr1_3:66480834-66480853 Msa0134930:intron 10.0%
!!! AACATAAATTTTCAAAATAA+AGG + chr1_3:66480989-66481008 Msa0134940:intron 10.0%
!! ATAATAATAATATATGTACT+GGG + chr1_3:66483747-66483766 None:intergenic 10.0%
!! AATAATAATAATATATGTAC+TGG + chr1_3:66483748-66483767 None:intergenic 10.0%
!! AAATATCATATGAATGAATA+AGG + chr1_3:66476652-66476671 None:intergenic 15.0%
!! ATTCATTCATATGATATTTA+AGG - chr1_3:66476653-66476672 Msa0134930:three_prime_UTR 15.0%
!!! TAAAAAACTTTTCTAGTTAA+AGG + chr1_3:66477124-66477143 None:intergenic 15.0%
!! AAAACAAAACATAAATATTG+CGG + chr1_3:66477464-66477483 None:intergenic 15.0%
!!! AATATTTATGTTTTGTTTTG+TGG - chr1_3:66477465-66477484 Msa0134930:CDS 15.0%
!!! ATATTTATGTTTTGTTTTGT+GGG - chr1_3:66477466-66477485 Msa0134930:CDS 15.0%
!! TAAAAATATCAATGTATCTA+AGG + chr1_3:66477504-66477523 None:intergenic 15.0%
!!! TTTTATAAATACAAAACAAG+CGG + chr1_3:66477628-66477647 None:intergenic 15.0%
!!! AAATTTTATTTTGGCTTATT+AGG + chr1_3:66477784-66477803 None:intergenic 15.0%
!!! AATTTTCTGATTTTTTATGT+AGG + chr1_3:66477941-66477960 None:intergenic 15.0%
!! AAATTATCATAAACAAATGA+AGG - chr1_3:66477956-66477975 Msa0134930:intron 15.0%
!! AATTATCATAAACAAATGAA+GGG - chr1_3:66477957-66477976 Msa0134930:intron 15.0%
!! AAAATATAACAATGAAGTTA+TGG + chr1_3:66478335-66478354 None:intergenic 15.0%
!!! AGATTATTATTTGATAGTTT+TGG + chr1_3:66478467-66478486 None:intergenic 15.0%
!! AAGAAAAAGAAAGAAAAAAA+TGG - chr1_3:66478564-66478583 Msa0134930:intron 15.0%
!! TTTAAAGATCAAATAGATAA+TGG + chr1_3:66478786-66478805 None:intergenic 15.0%
!!! TTGAATTTGGAATAAATAAT+TGG + chr1_3:66478887-66478906 None:intergenic 15.0%
!!! ATTTTATTTTGTTTAAGATG+TGG - chr1_3:66480489-66480508 Msa0134930:intron 15.0%
!!! TTTTATTTTGTTTAAGATGT+GGG - chr1_3:66480490-66480509 Msa0134930:intron 15.0%
!!! AAATTTTAATTAAACTCAAG+GGG + chr1_3:66480610-66480629 Msa0134940:intron 15.0%
!!! TTTTCCTTTTGTAATATTAA+AGG - chr1_3:66481265-66481284 Msa0134930:intron 15.0%
!! ATAATTGAATTGATAGATAT+AGG + chr1_3:66482721-66482740 None:intergenic 15.0%
!! TAAATCTATTTATGAAAGAA+AGG - chr1_3:66482943-66482962 Msa0134930:intron 15.0%
!!! ACTTTTAAAGCTTAATTCAA+AGG + chr1_3:66477230-66477249 None:intergenic 20.0%
!!! TTATTTTTTTGCTTGTTTTG+TGG - chr1_3:66477526-66477545 Msa0134930:intron 20.0%
!!! TATTTTTTTGCTTGTTTTGT+GGG - chr1_3:66477527-66477546 Msa0134930:intron 20.0%
!! AAATGTATATTATAGTACCT+TGG + chr1_3:66477574-66477593 None:intergenic 20.0%
!! ATTATCATAAACAAATGAAG+GGG - chr1_3:66477958-66477977 Msa0134930:intron 20.0%
!! CTATCAAATAATAATCTATG+TGG - chr1_3:66478470-66478489 Msa0134930:CDS 20.0%
!!! CATTGAGTAAATGTTTTTTT+AGG - chr1_3:66478937-66478956 Msa0134930:intron 20.0%
!! ATTTCAAGGAAAAATTAACA+TGG - chr1_3:66478982-66479001 Msa0134930:intron 20.0%
!! AAAAATTAACATGGATAATG+TGG - chr1_3:66478991-66479010 Msa0134930:intron 20.0%
!! GAATATGCATATTATTTGAA+AGG - chr1_3:66479067-66479086 Msa0134930:intron 20.0%
!! ATTATAGATGTGACTAAATT+TGG + chr1_3:66479110-66479129 None:intergenic 20.0%
!!! TTCTATGATTTTAGTTTACT+TGG + chr1_3:66479451-66479470 None:intergenic 20.0%
!!! TCAAAATACTTTTGTTCTTT+TGG - chr1_3:66479543-66479562 Msa0134930:CDS 20.0%
!!! TTTTTAGTTGAACATGTTTA+TGG + chr1_3:66479670-66479689 None:intergenic 20.0%
!! TGATTTATGCAATTCAAATT+AGG + chr1_3:66479910-66479929 Msa0134940:five_prime_UTR 20.0%
!! AAAATAATTCCATCAAAGAA+AGG - chr1_3:66480010-66480029 Msa0134930:intron 20.0%
!! AATGAATTCAAAATATTTCC+AGG + chr1_3:66480210-66480229 Msa0134940:five_prime_UTR 20.0%
!!! ACTCAATTTTGTATAATTGT+GGG - chr1_3:66480551-66480570 Msa0134930:intron 20.0%
!! AAAAGATATTATTCTTTGTG+GGG + chr1_3:66480766-66480785 Msa0134940:intron 20.0%
!! GAAAAGATATTATTCTTTGT+GGG + chr1_3:66480767-66480786 Msa0134940:intron 20.0%
!! AGAAAAGATATTATTCTTTG+TGG + chr1_3:66480768-66480787 Msa0134940:intron 20.0%
!! ATAATAAAACTTACCAAAAC+AGG + chr1_3:66480966-66480985 Msa0134940:intron 20.0%
!!! TTTATGTTTGTTTGATTTGA+AGG - chr1_3:66481001-66481020 Msa0134930:intron 20.0%
!! AGAACCTTTAATATTACAAA+AGG + chr1_3:66481272-66481291 Msa0134940:CDS 20.0%
!!! ACAAATTGTTCAACATTTTT+TGG + chr1_3:66481342-66481361 Msa0134940:intron 20.0%
!! ATGACAAATAAGTTAAAATG+AGG - chr1_3:66481453-66481472 Msa0134930:intron 20.0%
!! AGCTACAATAACATAATTTA+AGG + chr1_3:66481767-66481786 Msa0134940:CDS 20.0%
!! GTAAAAAAAGTTAGAATCAT+GGG + chr1_3:66481812-66481831 Msa0134940:CDS 20.0%
!! AGTACTACGTAATTAATAAA+GGG + chr1_3:66481884-66481903 Msa0134940:three_prime_UTR 20.0%
!! TAGTACTACGTAATTAATAA+AGG + chr1_3:66481885-66481904 Msa0134940:three_prime_UTR 20.0%
!! CATATTTAATTAGAATCACA+AGG + chr1_3:66482397-66482416 None:intergenic 20.0%
!!! AATTCTCAACAATTTTCTTT+CGG - chr1_3:66482454-66482473 Msa0134930:intron 20.0%
!!! TATAAATGTAACTCTGAAAT+AGG + chr1_3:66482630-66482649 None:intergenic 20.0%
!! TATTTCAGAGTTACATTTAT+AGG - chr1_3:66482629-66482648 Msa0134930:intron 20.0%
!! ATTTCAGAGTTACATTTATA+GGG - chr1_3:66482630-66482649 Msa0134930:intron 20.0%
!!! AACATTTTAATCTCAAGAAA+GGG - chr1_3:66482683-66482702 Msa0134930:intron 20.0%
!! TTAGTACATTATAATCTAGA+AGG + chr1_3:66482867-66482886 None:intergenic 20.0%
!! TATCATATCATATCATGAAT+TGG - chr1_3:66483794-66483813 Msa0134930:five_prime_UTR 20.0%
!!! TCTTGTTTTTTTGTGTGTAT+AGG - chr1_3:66476921-66476940 Msa0134930:CDS 25.0%
! ACAACTACTACTATAGTATA+GGG + chr1_3:66477271-66477290 None:intergenic 25.0%
! TACAACTACTACTATAGTAT+AGG + chr1_3:66477272-66477291 None:intergenic 25.0%
! AAATATCAATGTATCTAAGG+AGG + chr1_3:66477501-66477520 None:intergenic 25.0%
!!! AACTCTAAAATAAACCAGTA+TGG - chr1_3:66477991-66478010 Msa0134930:intron 25.0%
!!! TTTCTTTGAGCTTGTTAATT+TGG + chr1_3:66478111-66478130 None:intergenic 25.0%
! AAATTAACAAGCTCAAAGAA+AGG - chr1_3:66478110-66478129 Msa0134930:intron 25.0%
!!! AAGTTTTATTTTGTTGTCCA+CGG + chr1_3:66478225-66478244 None:intergenic 25.0%
! CAAAATAAAACTTAAACCAG+AGG - chr1_3:66478232-66478251 Msa0134930:intron 25.0%
!!! CAATGAAGTTATGGTTTTTT+GGG + chr1_3:66478326-66478345 None:intergenic 25.0%
!!! ACAATGAAGTTATGGTTTTT+TGG + chr1_3:66478327-66478346 None:intergenic 25.0%
!!! ATAGTTTTGGTAATTTAGAC+GGG + chr1_3:66478454-66478473 None:intergenic 25.0%
!!! GATAGTTTTGGTAATTTAGA+CGG + chr1_3:66478455-66478474 None:intergenic 25.0%
! AAATAATAATCTATGTGGCA+GGG - chr1_3:66478475-66478494 Msa0134930:CDS 25.0%
!!! GCATTTGTTATTCCATATTT+TGG - chr1_3:66478505-66478524 Msa0134930:CDS 25.0%
!! AATAGTTTTTGTACAACTCA+GGG + chr1_3:66478691-66478710 None:intergenic 25.0%
!! TAATAGTTTTTGTACAACTC+AGG + chr1_3:66478692-66478711 None:intergenic 25.0%
!!! GATAATGGAATTCCTATAAT+AGG + chr1_3:66478771-66478790 None:intergenic 25.0%
!! AGTACTGTTTTCATTTCTAT+TGG + chr1_3:66478845-66478864 None:intergenic 25.0%
! TGTTAAACTTCTGTTGAATT+TGG + chr1_3:66478900-66478919 None:intergenic 25.0%
! TTAACACAAAAAGAAGCTAT+TGG - chr1_3:66478914-66478933 Msa0134930:intron 25.0%
! CTTGAAATTTAGTTAGTGTT+GGG + chr1_3:66478970-66478989 None:intergenic 25.0%
! AAACAATTCTTCAATGCAAA+CGG - chr1_3:66479027-66479046 Msa0134930:intron 25.0%
!! TGCATATTCTTTTACAACAA+TGG + chr1_3:66479056-66479075 None:intergenic 25.0%
! ATCTAAATGAAATGATAACC+TGG - chr1_3:66479173-66479192 Msa0134930:CDS 25.0%
! TTTCGAAAAAATCAAGCTTT+GGG + chr1_3:66479238-66479257 None:intergenic 25.0%
! ATTCAAGGTCATTAATATGA+TGG - chr1_3:66479367-66479386 Msa0134930:intron 25.0%
! TTCAAGGTCATTAATATGAT+GGG - chr1_3:66479368-66479387 Msa0134930:intron 25.0%
!!! ATTTTAGTTTACTTGGTTCT+AGG + chr1_3:66479444-66479463 None:intergenic 25.0%
!! AATACTTTTGTTCTTTTGGT+TGG - chr1_3:66479547-66479566 Msa0134930:CDS 25.0%
!!! GTGCTTATTTTATTTGCTTT+TGG + chr1_3:66479722-66479741 None:intergenic 25.0%
! TGAATTAAATCTTGAGCAAT+TGG + chr1_3:66479755-66479774 Msa0134940:five_prime_UTR 25.0%
!! ATTGAATGTCTTTTCCTAAT+GGG + chr1_3:66479975-66479994 Msa0134940:five_prime_UTR 25.0%
!! TATTGAATGTCTTTTCCTAA+TGG + chr1_3:66479976-66479995 Msa0134940:five_prime_UTR 25.0%
!! CACTCAATTTTGTATAATTG+TGG - chr1_3:66480550-66480569 Msa0134930:intron 25.0%
!! CTCAATTTTGTATAATTGTG+GGG - chr1_3:66480552-66480571 Msa0134930:intron 25.0%
!!! TAAATTTTGGTATTTGTGAG+CGG + chr1_3:66480641-66480660 Msa0134940:intron 25.0%
! CAAAATTTACCTCAATTTGT+GGG - chr1_3:66480652-66480671 Msa0134930:intron 25.0%
!! AACAAAGTAGTTTAGTTTCA+TGG + chr1_3:66481237-66481256 Msa0134940:CDS 25.0%
!!! TGGAAATTTTGGTAATGAAT+AGG + chr1_3:66481402-66481421 Msa0134940:intron 25.0%
!! AAATGGCATTATGGAAATTT+TGG + chr1_3:66481413-66481432 Msa0134940:intron 25.0%
! AAAGAAACAGAAAAGATTGA+GGG - chr1_3:66481505-66481524 Msa0134930:intron 25.0%
! CTGTAGTATACATTAATTGA+AGG + chr1_3:66481657-66481676 Msa0134940:CDS 25.0%
!!! ATGTTAGAAAGGGTATTATT+GGG - chr1_3:66481680-66481699 Msa0134930:intron 25.0%
! AAATTATGTTATTGTAGCTG+TGG - chr1_3:66481768-66481787 Msa0134930:intron 25.0%
! GGTAAAAAAAGTTAGAATCA+TGG + chr1_3:66481813-66481832 Msa0134940:CDS 25.0%
! ATGGTACTAATTTACAAAAG+AGG + chr1_3:66481859-66481878 Msa0134940:three_prime_UTR 25.0%
! GTAATCAGTTGAATTAAACA+TGG + chr1_3:66481919-66481938 Msa0134940:three_prime_UTR 25.0%
! AATTCAACTGATTACATTAC+AGG - chr1_3:66481924-66481943 Msa0134930:intron 25.0%
! ATTTACATCCATACATTACT+AGG - chr1_3:66482370-66482389 Msa0134930:intron 25.0%
! GAAAGAAAATTGTTGAGAAT+TGG + chr1_3:66482455-66482474 None:intergenic 25.0%
!!! CAACATTTTAATCTCAAGAA+AGG - chr1_3:66482682-66482701 Msa0134930:intron 25.0%
! TATTTGTAGTTTATGACTGA+TGG - chr1_3:66482910-66482929 Msa0134930:intron 25.0%
! GTATGTGAAATTCTATAGAA+GGG - chr1_3:66483516-66483535 Msa0134930:CDS 25.0%
TGGAATAATAGTTCTCTTGT+TGG - chr1_3:66476694-66476713 Msa0134930:three_prime_UTR 30.0%
!!! TCAGCATTTTTTTCTCGAAA+TGG - chr1_3:66476741-66476760 Msa0134930:three_prime_UTR 30.0%
!!! CAGCATTTTTTTCTCGAAAT+GGG - chr1_3:66476742-66476761 Msa0134930:three_prime_UTR 30.0%
!!! AGCATTTTTTTCTCGAAATG+GGG - chr1_3:66476743-66476762 Msa0134930:three_prime_UTR 30.0%
GAAAACACAAAAAGAGAAGT+CGG + chr1_3:66477165-66477184 None:intergenic 30.0%
GAAGAAAAAGCAAGATTCTT+TGG + chr1_3:66477205-66477224 None:intergenic 30.0%
! ATTTGTGGGATTAGTATATG+CGG + chr1_3:66477394-66477413 None:intergenic 30.0%
ACAAAACATAAATATTGCGG+CGG + chr1_3:66477461-66477480 None:intergenic 30.0%
TTATAGTACCTTGGTATCAA+AGG + chr1_3:66477565-66477584 None:intergenic 30.0%
!! ATTAAGTCCTGATGTTGTTT+TGG + chr1_3:66477908-66477927 None:intergenic 30.0%
!!! TCTGATTTTTTATGTAGGAG+TGG + chr1_3:66477936-66477955 None:intergenic 30.0%
!!! CAGGTTTTGAACAAAAAACA+TGG - chr1_3:66478031-66478050 Msa0134930:intron 30.0%
! TGAAATTTGGACTGTTTTGT+TGG + chr1_3:66478058-66478077 None:intergenic 30.0%
!!! AGTTTGCTGTTTTGTTTCTA+GGG + chr1_3:66478084-66478103 None:intergenic 30.0%
!!! AGTTTTATTTTGTTGTCCAC+GGG + chr1_3:66478224-66478243 None:intergenic 30.0%
CAAATAATAATCTATGTGGC+AGG - chr1_3:66478474-66478493 Msa0134930:CDS 30.0%
AATAATAATCTATGTGGCAG+GGG - chr1_3:66478476-66478495 Msa0134930:CDS 30.0%
GTAAATCTGAGTCCAAAATA+TGG + chr1_3:66478520-66478539 None:intergenic 30.0%
GAAAGAAAAAAATGGCATAC+CGG - chr1_3:66478572-66478591 Msa0134930:intron 30.0%
ATTTCTATTGGCAGAAACTT+TGG + chr1_3:66478833-66478852 None:intergenic 30.0%
CCTTGAAATTTAGTTAGTGT+TGG + chr1_3:66478971-66478990 None:intergenic 30.0%
CCAACACTAACTAAATTTCA+AGG - chr1_3:66478968-66478987 Msa0134930:intron 30.0%
ATGCATATTATTTGAAAGGC+TGG - chr1_3:66479071-66479090 Msa0134930:intron 30.0%
ACTAAATTTGGACTTTCTAG+TGG + chr1_3:66479098-66479117 None:intergenic 30.0%
GTTTCGAAAAAATCAAGCTT+TGG + chr1_3:66479239-66479258 None:intergenic 30.0%
! GATGAGTAGATAACAGTTTT+CGG - chr1_3:66479306-66479325 Msa0134930:intron 30.0%
TCAAGGTCATTAATATGATG+GGG - chr1_3:66479369-66479388 Msa0134930:intron 30.0%
GTAAACTTCATTGTACTCTT+GGG + chr1_3:66479621-66479640 None:intergenic 30.0%
TGTAAACTTCATTGTACTCT+TGG + chr1_3:66479622-66479641 None:intergenic 30.0%
AGCAAATAAAATAAGCACTC+AGG - chr1_3:66479724-66479743 Msa0134930:intron 30.0%
ATCAAAAATCACTCTCAACA+TGG - chr1_3:66479828-66479847 Msa0134930:intron 30.0%
TTGGTATTACCTTTCTTTGA+TGG + chr1_3:66480022-66480041 Msa0134940:five_prime_UTR 30.0%
!!! GTTTTGAGATTTGAAGGATT+TGG + chr1_3:66480096-66480115 Msa0134940:five_prime_UTR 30.0%
GCATAAAGATTAGTAAAACC+TGG - chr1_3:66480189-66480208 Msa0134930:intron 30.0%
!!! GGTTTTGTTTTGCCAATTTA+CGG - chr1_3:66480573-66480592 Msa0134930:intron 30.0%
!!! GTTTTGTTTTGCCAATTTAC+GGG - chr1_3:66480574-66480593 Msa0134930:intron 30.0%
!!! TTTTGTTTTGCCAATTTACG+GGG - chr1_3:66480575-66480594 Msa0134930:intron 30.0%
! CCACAAATTGAGGTAAATTT+TGG + chr1_3:66480654-66480673 Msa0134940:intron 30.0%
CCAAAATTTACCTCAATTTG+TGG - chr1_3:66480651-66480670 Msa0134930:intron 30.0%
! ATTTTTCTGAGTTCAAAGTG+TGG - chr1_3:66481070-66481089 Msa0134930:intron 30.0%
! TTTTTCTGAGTTCAAAGTGT+GGG - chr1_3:66481071-66481090 Msa0134930:intron 30.0%
GGGATTTGAATTTGGTTAAT+TGG - chr1_3:66481091-66481110 Msa0134930:intron 30.0%
!!! ATTTTTTGGCATGCTTGAAA+TGG + chr1_3:66481328-66481347 Msa0134940:intron 30.0%
! TCTTGTTTCAAATGGCATTA+TGG + chr1_3:66481422-66481441 Msa0134940:intron 30.0%
GAAAGAAACAGAAAAGATTG+AGG - chr1_3:66481504-66481523 Msa0134930:intron 30.0%
TACTACAGTACATGTTAGAA+AGG - chr1_3:66481669-66481688 Msa0134930:intron 30.0%
ACTACAGTACATGTTAGAAA+GGG - chr1_3:66481670-66481689 Msa0134930:intron 30.0%
!! CATGTTAGAAAGGGTATTAT+TGG - chr1_3:66481679-66481698 Msa0134930:intron 30.0%
GAAATAGACCAATTGTGATA+GGG + chr1_3:66481730-66481749 Msa0134940:CDS 30.0%
TGAAATAGACCAATTGTGAT+AGG + chr1_3:66481731-66481750 Msa0134940:CDS 30.0%
! AATAAAGAGTAGTGGGAAAA+AGG + chr1_3:66481834-66481853 Msa0134940:exon 30.0%
AGAGGTAAATAAAGAGTAGT+GGG + chr1_3:66481841-66481860 Msa0134940:exon 30.0%
AAGAGGTAAATAAAGAGTAG+TGG + chr1_3:66481842-66481861 Msa0134940:exon 30.0%
ACGTAATTAATAAAGGGTGA+TGG + chr1_3:66481878-66481897 Msa0134940:three_prime_UTR 30.0%
!! TGGATTTATGAACTTGTTGT+TGG - chr1_3:66481965-66481984 Msa0134930:intron 30.0%
!! GGATTTATGAACTTGTTGTT+GGG - chr1_3:66481966-66481985 Msa0134930:intron 30.0%
AACCTATATCTAGTACTGTT+TGG - chr1_3:66482099-66482118 Msa0134930:intron 30.0%
! TGTTGTTATTGGAGTTTAAC+TGG + chr1_3:66482131-66482150 Msa0134940:three_prime_UTR 30.0%
! ACAGCAAATAGTGTTGTTAT+TGG + chr1_3:66482142-66482161 Msa0134940:three_prime_UTR 30.0%
!!! CTCGATCTCTGTTTTTTTTA+AGG - chr1_3:66482295-66482314 Msa0134930:intron 30.0%
!!! GATCTCTGTTTTTTTTAAGG+TGG - chr1_3:66482298-66482317 Msa0134930:intron 30.0%
TAGTATATTCTTGGATGGAT+TGG + chr1_3:66482330-66482349 None:intergenic 30.0%
AAGAGCAAGTAGTATATTCT+TGG + chr1_3:66482339-66482358 None:intergenic 30.0%
!! TTGACTTGTTGTGTAAGATT+AGG - chr1_3:66482497-66482516 Msa0134930:intron 30.0%
AAGATTAGGTAGAACTAGTT+CGG - chr1_3:66482511-66482530 Msa0134930:intron 30.0%
TAGCTAGGTAATTATATGGT+TGG + chr1_3:66482562-66482581 None:intergenic 30.0%
CACATAGCTAGGTAATTATA+TGG + chr1_3:66482566-66482585 None:intergenic 30.0%
AGAGTTACATTTATAGGGTA+TGG - chr1_3:66482635-66482654 Msa0134930:intron 30.0%
GAGTTACATTTATAGGGTAT+GGG - chr1_3:66482636-66482655 Msa0134930:intron 30.0%
TTGAGATTAAAATGTTGCGA+AGG + chr1_3:66482679-66482698 None:intergenic 30.0%
! AAGAGGTAGAGAATCATTTT+TGG - chr1_3:66483492-66483511 Msa0134930:CDS 30.0%
CGTATGTGAAATTCTATAGA+AGG - chr1_3:66483515-66483534 Msa0134930:CDS 30.0%
CGTATGATGAAATGGTTTAT+AGG - chr1_3:66483539-66483558 Msa0134930:intron 30.0%
GTAACTATGCTTGTGTGAAA+CGG - chr1_3:66476953-66476972 Msa0134930:CDS 35.0%
! AAACGGTTTCTGAAAGTGAA+AGG - chr1_3:66476970-66476989 Msa0134930:CDS 35.0%
AACTAAGAGCTTGTCTTTCA+TGG - chr1_3:66477019-66477038 Msa0134930:CDS 35.0%
ACTACTATAGTATAGGGAGT+GGG + chr1_3:66477265-66477284 None:intergenic 35.0%
TACTACTATAGTATAGGGAG+TGG + chr1_3:66477266-66477285 None:intergenic 35.0%
!! GCGGTTTTTGAGCTATTTTA+CGG - chr1_3:66477322-66477341 Msa0134930:CDS 35.0%
!! CGGTTTTTGAGCTATTTTAC+GGG - chr1_3:66477323-66477342 Msa0134930:CDS 35.0%
!! GGTTTTTGAGCTATTTTACG+GGG - chr1_3:66477324-66477343 Msa0134930:CDS 35.0%
!! GTTTTTGAGCTATTTTACGG+GGG - chr1_3:66477325-66477344 Msa0134930:CDS 35.0%
! TTTGTGGGATTAGTATATGC+GGG + chr1_3:66477393-66477412 None:intergenic 35.0%
CTAATCCCACAAATTATCTG+CGG - chr1_3:66477400-66477419 Msa0134930:CDS 35.0%
TAATCCCACAAATTATCTGC+GGG - chr1_3:66477401-66477420 Msa0134930:CDS 35.0%
TTTAACCTCCTTTGATACCA+AGG - chr1_3:66477554-66477573 Msa0134930:intron 35.0%
AGGATGATCATTTAATGCTG+AGG + chr1_3:66477832-66477851 None:intergenic 35.0%
TCAGTTACCAAAACAACATC+AGG - chr1_3:66477898-66477917 Msa0134930:intron 35.0%
!!! GTTTGCTGTTTTGTTTCTAG+GGG + chr1_3:66478083-66478102 None:intergenic 35.0%
!!! GAGTTTGCTGTTTTGTTTCT+AGG + chr1_3:66478085-66478104 None:intergenic 35.0%
!! TTTTGACTCAACTGTTGTGA+TGG + chr1_3:66478169-66478188 None:intergenic 35.0%
!! TATGTCGTAGTTTGTTGTCT+TGG + chr1_3:66478295-66478314 None:intergenic 35.0%
ACGATGTCAAAATTAGAGGA+CGG + chr1_3:66478391-66478410 None:intergenic 35.0%
GTGTACGATGTCAAAATTAG+AGG + chr1_3:66478395-66478414 None:intergenic 35.0%
!! AATTTAGACGGGTTAAAGCT+TGG + chr1_3:66478443-66478462 None:intergenic 35.0%
TTCAAACTTAGCAGATATCC+CGG - chr1_3:66478731-66478750 Msa0134930:intron 35.0%
ACTGTCCAAAATGTTCATGA+GGG + chr1_3:66479266-66479285 None:intergenic 35.0%
AACTGTCCAAAATGTTCATG+AGG + chr1_3:66479267-66479286 None:intergenic 35.0%
! TGAACATTTTGGACAGTTTC+AGG - chr1_3:66479269-66479288 Msa0134930:intron 35.0%
! ATTTTGGACAGTTTCAGGAA+TGG - chr1_3:66479274-66479293 Msa0134930:intron 35.0%
! ACTAGTTGATGCGTATTTAG+AGG + chr1_3:66479337-66479356 None:intergenic 35.0%
! TCTAAAGTTGTGTATTGTGC+AGG + chr1_3:66479406-66479425 None:intergenic 35.0%
!! GTTCTAGGAAGAACTTCTTA+AGG + chr1_3:66479429-66479448 None:intergenic 35.0%
! AAGTTGCTTTCTTTCCCATT+AGG - chr1_3:66479958-66479977 Msa0134930:intron 35.0%
AAGGTAATACCAACAGTGAT+CGG - chr1_3:66480029-66480048 Msa0134930:intron 35.0%
AATCTTGGGAATTTCAGACA+TGG + chr1_3:66480067-66480086 Msa0134940:five_prime_UTR 35.0%
TTGAGATTTGAAGGATTTGG+TGG + chr1_3:66480093-66480112 Msa0134940:five_prime_UTR 35.0%
!!! TGGTAGGTTTTGAGATTTGA+AGG + chr1_3:66480102-66480121 Msa0134940:five_prime_UTR 35.0%
CTTTCGAATCAAAGATGTCA+GGG - chr1_3:66480238-66480257 Msa0134930:intron 35.0%
CAGAGATCTCATAGATAGTT+AGG - chr1_3:66480357-66480376 Msa0134930:intron 35.0%
!!! TTTGTTTTGCCAATTTACGG+GGG - chr1_3:66480576-66480595 Msa0134930:intron 35.0%
!!! TTGTGGGAGTTTTTTAGTTG+AGG + chr1_3:66480690-66480709 Msa0134940:intron 35.0%
! TTTCAGAGGTATGAAGAAAG+TGG + chr1_3:66480743-66480762 Msa0134940:intron 35.0%
TTCTCAGCTGAATTATCTGA+AGG - chr1_3:66480903-66480922 Msa0134930:intron 35.0%
TCTCAGCTGAATTATCTGAA+GGG - chr1_3:66480904-66480923 Msa0134930:intron 35.0%
AAAACTTACCAAAACAGGTC+TGG + chr1_3:66480961-66480980 Msa0134940:intron 35.0%
CAAAGTGTGGGATTTGAATT+TGG - chr1_3:66481083-66481102 Msa0134930:intron 35.0%
!! TCTGATAGTCTTGTTTCATG+CGG + chr1_3:66481134-66481153 Msa0134940:five_prime_UTR 35.0%
AAGGTTCTTCACTCGTTTAT+TGG - chr1_3:66481284-66481303 Msa0134930:intron 35.0%
!! TCGTTTATTGGCTTTCACAA+TGG - chr1_3:66481296-66481315 Msa0134930:intron 35.0%
!! TTTATTGGCTTTCACAATGG+AGG - chr1_3:66481299-66481318 Msa0134930:intron 35.0%
! CCTAACTCTCTTGTTTCAAA+TGG + chr1_3:66481430-66481449 Msa0134940:intron 35.0%
! CCATTTGAAACAAGAGAGTT+AGG - chr1_3:66481427-66481446 Msa0134930:intron 35.0%
AATAAATGAGAGAGTAGAGC+AGG - chr1_3:66481537-66481556 Msa0134930:intron 35.0%
GATACATTCCCTATCACAAT+TGG - chr1_3:66481719-66481738 Msa0134930:intron 35.0%
!! TTGGGAGCATTGAAAATTGT+GGG - chr1_3:66481984-66482003 Msa0134930:intron 35.0%
! AGTATGCAAAAAGTGATGGA+GGG + chr1_3:66482052-66482071 Msa0134940:three_prime_UTR 35.0%
AAGTATGCAAAAAGTGATGG+AGG + chr1_3:66482053-66482072 Msa0134940:three_prime_UTR 35.0%
CACAAGTATGCAAAAAGTGA+TGG + chr1_3:66482056-66482075 Msa0134940:three_prime_UTR 35.0%
!!! CATCACTTTTTGCATACTTG+TGG - chr1_3:66482054-66482073 Msa0134930:intron 35.0%
! ACTTTTTGCATACTTGTGGA+AGG - chr1_3:66482058-66482077 Msa0134930:intron 35.0%
!! TGTCTTGTTTGTAGTTGTGT+TGG - chr1_3:66482159-66482178 Msa0134930:intron 35.0%
!! GTCTTGTTTGTAGTTGTGTT+GGG - chr1_3:66482160-66482179 Msa0134930:intron 35.0%
AAAAAAACAGAGATCGAGAG+TGG + chr1_3:66482293-66482312 None:intergenic 35.0%
!! TATTCTTGGATGGATTGGAT+TGG + chr1_3:66482325-66482344 None:intergenic 35.0%
GCAAGTAGTATATTCTTGGA+TGG + chr1_3:66482335-66482354 None:intergenic 35.0%
! CATTGATGGTTCGAAATCTA+GGG + chr1_3:66483047-66483066 None:intergenic 35.0%
!!! GATCTTAGCCGTTGATTTTA+GGG + chr1_3:66483128-66483147 None:intergenic 35.0%
CTAAAATCAACGGCTAAGAT+CGG - chr1_3:66483127-66483146 Msa0134930:intron 35.0%
TGGTTTATAGGTCAAAGATG+AGG - chr1_3:66483551-66483570 Msa0134930:intron 35.0%
TGATTAGAAACGCTGAGAAA+CGG + chr1_3:66483641-66483660 None:intergenic 35.0%
!! TGATGAAGTTGAGTTGATTG+CGG + chr1_3:66483688-66483707 None:intergenic 35.0%
ACACGAGTGTACTTGAAAAT+TGG + chr1_3:66483848-66483867 None:intergenic 35.0%
! TGTGTGTATGCTTGGTAATT+TGG - chr1_3:66483865-66483884 Msa0134930:five_prime_UTR 35.0%
ACTTGAACTCCTCAAAGACA+AGG - chr1_3:66476771-66476790 Msa0134930:three_prime_UTR 40.0%
TAGCAGTTTCCTTGTCTTTG+AGG + chr1_3:66476783-66476802 None:intergenic 40.0%
!! TGGAGAGAAAGCATTGTTAC+TGG - chr1_3:66477039-66477058 Msa0134930:CDS 40.0%
CTACTATAGTATAGGGAGTG+GGG + chr1_3:66477264-66477283 None:intergenic 40.0%
!! AACCTCCACTGATTGTTTTG+CGG - chr1_3:66477353-66477372 Msa0134930:CDS 40.0%
AAATCCCGCAAAACAATCAG+TGG + chr1_3:66477361-66477380 None:intergenic 40.0%
! TTGTGGGATTAGTATATGCG+GGG + chr1_3:66477392-66477411 None:intergenic 40.0%
! AACTCCCGCAGATAATTTGT+GGG + chr1_3:66477408-66477427 None:intergenic 40.0%
AAACTCCCGCAGATAATTTG+TGG + chr1_3:66477409-66477428 None:intergenic 40.0%
TAGTACCTTGGTATCAAAGG+AGG + chr1_3:66477562-66477581 None:intergenic 40.0%
ATACAAAACAAGCGGTCACT+TGG + chr1_3:66477620-66477639 None:intergenic 40.0%
! GTTTCTAGGGGTGTGAAATT+TGG + chr1_3:66478071-66478090 None:intergenic 40.0%
!!! GACTTCTTCTAGTTTTGTGC+AGG + chr1_3:66478265-66478284 None:intergenic 40.0%
ATGTCAAAATTAGAGGACGG+AGG + chr1_3:66478388-66478407 None:intergenic 40.0%
TAATGCTGTTGTGCTTGACA+TGG + chr1_3:66478612-66478631 None:intergenic 40.0%
ACAGCATTAGCATCAGCAAA+TGG - chr1_3:66478623-66478642 Msa0134930:intron 40.0%
TCTGCTAAGTTTGAAGAAGC+TGG + chr1_3:66478726-66478745 None:intergenic 40.0%
CTATAATAGGAGCTGGTACT+GGG + chr1_3:66478758-66478777 None:intergenic 40.0%
GGAATTCCTATAATAGGAGC+TGG + chr1_3:66478765-66478784 None:intergenic 40.0%
!!! TGATAACCTGGTTTTGCATC+TGG - chr1_3:66479185-66479204 Msa0134930:intron 40.0%
!!! GATAACCTGGTTTTGCATCT+GGG - chr1_3:66479186-66479205 Msa0134930:intron 40.0%
! CAGAACCCTCATGAACATTT+TGG - chr1_3:66479258-66479277 Msa0134930:intron 40.0%
CTAGTGTGTTCGCAAATTCA+AGG - chr1_3:66479352-66479371 Msa0134930:intron 40.0%
GTTGAACATGTTTATGGCTG+TGG + chr1_3:66479664-66479683 None:intergenic 40.0%
TTGATACTTCCGATCACTGT+TGG + chr1_3:66480041-66480060 Msa0134940:five_prime_UTR 40.0%
!! GGATTTGGTGGAAGAATCTT+GGG + chr1_3:66480081-66480100 Msa0134940:five_prime_UTR 40.0%
!! AGGATTTGGTGGAAGAATCT+TGG + chr1_3:66480082-66480101 Msa0134940:five_prime_UTR 40.0%
! TGATCTGTTGCAGATTTGGT+AGG + chr1_3:66480118-66480137 Msa0134940:five_prime_UTR 40.0%
GCTATGATCTGTTGCAGATT+TGG + chr1_3:66480122-66480141 Msa0134940:five_prime_UTR 40.0%
GCTTTCGAATCAAAGATGTC+AGG - chr1_3:66480237-66480256 Msa0134930:intron 40.0%
!! ACCGATTTAGCTTTGCATAG+AGG - chr1_3:66480303-66480322 Msa0134930:intron 40.0%
GCCTCTATGCAAAGCTAAAT+CGG + chr1_3:66480307-66480326 Msa0134940:intron 40.0%
! GAAGGAAGTTTTGCAAAGTG+CGG - chr1_3:66480331-66480350 Msa0134930:intron 40.0%
GATGTGAGATCTGAATCGAA+CGG - chr1_3:66480379-66480398 Msa0134930:intron 40.0%
! GCGAAGGTAAGGGATTATTT+TGG - chr1_3:66480401-66480420 Msa0134930:intron 40.0%
AAGATGTGGGTGAAACGAAA+AGG - chr1_3:66480503-66480522 Msa0134930:intron 40.0%
AGATGTGGGTGAAACGAAAA+GGG - chr1_3:66480504-66480523 Msa0134930:intron 40.0%
!! GTTCTAAAACCCCCGTAAAT+TGG + chr1_3:66480588-66480607 Msa0134940:intron 40.0%
TACCTCAATTTGTGGGAGTT+TGG - chr1_3:66480659-66480678 Msa0134930:intron 40.0%
ATCCAAACTCCCACAAATTG+AGG + chr1_3:66480664-66480683 Msa0134940:intron 40.0%
!! CAAAAAATGCGCTGGTTTGT+GGG + chr1_3:66480706-66480725 Msa0134940:intron 40.0%
!! ACAAAAAATGCGCTGGTTTG+TGG + chr1_3:66480707-66480726 Msa0134940:intron 40.0%
GATCACTACAAAAAATGCGC+TGG + chr1_3:66480714-66480733 Msa0134940:intron 40.0%
TATTCTTTGTGGGGTTTCAG+AGG + chr1_3:66480757-66480776 Msa0134940:intron 40.0%
AGCTGAATTATCTGAAGGGT+TGG - chr1_3:66480908-66480927 Msa0134930:intron 40.0%
! TGATGAATCCAGACCTGTTT+TGG - chr1_3:66480950-66480969 Msa0134930:intron 40.0%
! TGGTAATGAATAGGTGTGTG+TGG + chr1_3:66481393-66481412 Msa0134940:intron 40.0%
!! GTTGGGAGCATTGAAAATTG+TGG - chr1_3:66481983-66482002 Msa0134930:intron 40.0%
GGCCAAACAGTACTAGATAT+AGG + chr1_3:66482104-66482123 Msa0134940:three_prime_UTR 40.0%
TATTGGAGTTTAACTGGCAG+TGG + chr1_3:66482125-66482144 Msa0134940:three_prime_UTR 40.0%
ACAACAACTACGCATGTAAC+TGG - chr1_3:66482266-66482285 Msa0134930:intron 40.0%
CACAAGGACCTAGTAATGTA+TGG + chr1_3:66482381-66482400 None:intergenic 40.0%
AATAGTGTGTTGTCATGTGC+AGG - chr1_3:66482973-66482992 Msa0134930:intron 40.0%
ATAGTGTGTTGTCATGTGCA+GGG - chr1_3:66482974-66482993 Msa0134930:intron 40.0%
!! CATGTTGATAGCTCAACGAA+TGG + chr1_3:66483007-66483026 None:intergenic 40.0%
! CCATTGATGGTTCGAAATCT+AGG + chr1_3:66483048-66483067 None:intergenic 40.0%
CCTAGATTTCGAACCATCAA+TGG - chr1_3:66483045-66483064 Msa0134930:intron 40.0%
AAGTCGTTGTAGTCCATTGA+TGG + chr1_3:66483061-66483080 None:intergenic 40.0%
!!! CCGTTGATTTTAGGGTTGAT+GGG + chr1_3:66483120-66483139 None:intergenic 40.0%
CCCATCAACCCTAAAATCAA+CGG - chr1_3:66483117-66483136 Msa0134930:intron 40.0%
!!! CGATCTTAGCCGTTGATTTT+AGG + chr1_3:66483129-66483148 None:intergenic 40.0%
GATAATGTGAAGGTGGAAAG+AGG - chr1_3:66483475-66483494 Msa0134930:CDS 40.0%
! TAGAAGGGCGTATGATGAAA+TGG - chr1_3:66483531-66483550 Msa0134930:intron 40.0%
TAGAGACTAATCCACCAAGT+GGG + chr1_3:66483579-66483598 None:intergenic 40.0%
ATAGAGACTAATCCACCAAG+TGG + chr1_3:66483580-66483599 None:intergenic 40.0%
CTCTCTCTCTGCTGAGTTAT+TGG - chr1_3:66476618-66476637 Msa0134930:three_prime_UTR 45.0%
TACCTGTTTGACAGTGAGAG+GGG + chr1_3:66476842-66476861 None:intergenic 45.0%
GTACCTGTTTGACAGTGAGA+GGG + chr1_3:66476843-66476862 None:intergenic 45.0%
TGTACCTGTTTGACAGTGAG+AGG + chr1_3:66476844-66476863 None:intergenic 45.0%
!!! TCTAGGCGCGTTTTTTGTAG+TGG + chr1_3:66477297-66477316 None:intergenic 45.0%
CAAAAAACGCGCCTAGATTG+CGG - chr1_3:66477300-66477319 Msa0134930:CDS 45.0%
!! ACCTCCACTGATTGTTTTGC+GGG - chr1_3:66477354-66477373 Msa0134930:CDS 45.0%
! TGTGGGATTAGTATATGCGG+GGG + chr1_3:66477391-66477410 None:intergenic 45.0%
TCTCGCAATCTTGCATCCAT+GGG - chr1_3:66477851-66477870 Msa0134930:intron 45.0%
TGCATCCATGGGTGCTAATT+AGG - chr1_3:66477862-66477881 Msa0134930:intron 45.0%
GTTGCAGTTGAGTTCCATAC+TGG + chr1_3:66478008-66478027 None:intergenic 45.0%
TTGTGCAGGTTTATGTCCTC+TGG + chr1_3:66478251-66478270 None:intergenic 45.0%
! ACGGGTTAAAGCTTGGATAG+TGG + chr1_3:66478436-66478455 None:intergenic 45.0%
GCATACCGGCAAAACTTCAT+TGG - chr1_3:66478586-66478605 Msa0134930:intron 45.0%
! CATGGCCAATGAAGTTTTGC+CGG + chr1_3:66478594-66478613 None:intergenic 45.0%
GCTAAGTTTGAAGAAGCTGG+AGG + chr1_3:66478723-66478742 None:intergenic 45.0%
CCTATAATAGGAGCTGGTAC+TGG + chr1_3:66478759-66478778 None:intergenic 45.0%
CCAGTACCAGCTCCTATTAT+AGG - chr1_3:66478756-66478775 Msa0134930:intron 45.0%
GAATTCCCAGATGCAAAACC+AGG + chr1_3:66479194-66479213 None:intergenic 45.0%
TTTGCATCTGGGAATTCGCT+AGG - chr1_3:66479197-66479216 Msa0134930:intron 45.0%
TTCGCTAGGTGCATAGACAA+TGG - chr1_3:66479211-66479230 Msa0134930:intron 45.0%
GTTGTGTATTGTGCAGGTGA+AGG + chr1_3:66479400-66479419 None:intergenic 45.0%
CTTTGCATAGAGGCGATTGA+AGG - chr1_3:66480313-66480332 Msa0134930:intron 45.0%
! GGAAGCGATGATGATGATGA+TGG - chr1_3:66480422-66480441 Msa0134930:intron 45.0%
!! GCGATGATGATGATGATGGT+AGG - chr1_3:66480426-66480445 Msa0134930:intron 45.0%
GATGTGGGTGAAACGAAAAG+GGG - chr1_3:66480505-66480524 Msa0134930:intron 45.0%
ATGTGGGTGAAACGAAAAGG+GGG - chr1_3:66480506-66480525 Msa0134930:intron 45.0%
!! ATCTGAAGGGTTGGCTTATG+TGG - chr1_3:66480917-66480936 Msa0134930:intron 45.0%
!! ATTGGCTTTCACAATGGAGG+TGG - chr1_3:66481302-66481321 Msa0134930:intron 45.0%
! GAGTGGACTTACTTGCATCT+AGG + chr1_3:66481371-66481390 Msa0134940:intron 45.0%
ATGAATAGGTGTGTGTGGAG+TGG + chr1_3:66481388-66481407 Msa0134940:intron 45.0%
TTGAGTCTGTGACACAACAG+GGG + chr1_3:66481634-66481653 Msa0134940:intron 45.0%
GTTGAGTCTGTGACACAACA+GGG + chr1_3:66481635-66481654 Msa0134940:intron 45.0%
! GGCTTTTACAGATCAGCATC+TGG - chr1_3:66481945-66481964 Msa0134930:intron 45.0%
ATTGTGGGTGAGTACTATCC+AGG - chr1_3:66481999-66482018 Msa0134930:intron 45.0%
AATGCTTTGCTTAACCGTCC+TGG + chr1_3:66482020-66482039 Msa0134940:three_prime_UTR 45.0%
!!! GCCGTTGATTTTAGGGTTGA+TGG + chr1_3:66483121-66483140 None:intergenic 45.0%
ATGGTTTGAGTGAGTCGAGT+TGG + chr1_3:66483192-66483211 None:intergenic 45.0%
AACTCGACTCACTCAAACCA+TGG - chr1_3:66483191-66483210 Msa0134930:intron 45.0%
AAACCATGGTACCTAAGCCT+AGG - chr1_3:66483205-66483224 Msa0134930:intron 45.0%
AACACGTCATCCTCCAAAGT+AGG - chr1_3:66483235-66483254 Msa0134930:intron 45.0%
GGATAGGGATAATGTGAAGG+TGG - chr1_3:66483468-66483487 Msa0134930:CDS 45.0%
AGAGACTAATCCACCAAGTG+GGG + chr1_3:66483578-66483597 None:intergenic 45.0%
AAACGGAAAGGTGAGTGTGA+CGG + chr1_3:66483624-66483643 None:intergenic 45.0%
AGAAACGCTGAGAAACGGAA+AGG + chr1_3:66483636-66483655 None:intergenic 45.0%
TACACTCGTGTGTGTATGCT+TGG - chr1_3:66483857-66483876 Msa0134930:five_prime_UTR 45.0%
!!! TTTAGTATAAAATTTTATTT+TGG + chr1_3:66477793-66477812 None:intergenic 5.0%
GGTTGCGTGAAACAGAAGCT+TGG - chr1_3:66476674-66476693 Msa0134930:three_prime_UTR 50.0%
AACCCCTCTCACTGTCAAAC+AGG - chr1_3:66476837-66476856 Msa0134930:CDS 50.0%
CACAAAAAGAGAAGTCGGCG+TGG + chr1_3:66477160-66477179 None:intergenic 50.0%
CTCAAAAACCGCCGCAATCT+AGG + chr1_3:66477314-66477333 None:intergenic 50.0%
TCCCGCAAAACAATCAGTGG+AGG + chr1_3:66477358-66477377 None:intergenic 50.0%
!!! CGGGAGTTTTTAGTGATCGC+TGG - chr1_3:66477420-66477439 Msa0134930:CDS 50.0%
CATGGATGCAAGATTGCGAG+AGG + chr1_3:66477852-66477871 None:intergenic 50.0%
CTCTCGCAATCTTGCATCCA+TGG - chr1_3:66477850-66477869 Msa0134930:intron 50.0%
CAGAGCCTAATTAGCACCCA+TGG + chr1_3:66477870-66477889 None:intergenic 50.0%
GGAACTCAACTGCAACTAGC+AGG - chr1_3:66478012-66478031 Msa0134930:intron 50.0%
TGTCTGCAAAATCAGACCCG+TGG - chr1_3:66478205-66478224 Msa0134930:intron 50.0%
CTGGGAGAGGTTCATTAGCA+GGG + chr1_3:66478655-66478674 None:intergenic 50.0%
ACAGTTTCAGGAATGGCTGC+TGG - chr1_3:66479281-66479300 Msa0134930:intron 50.0%
ATGTCAGGGAGAGATACAGC+TGG - chr1_3:66480252-66480271 Msa0134930:intron 50.0%
AGATCTGAATCGAACGGCGA+AGG - chr1_3:66480385-66480404 Msa0134930:intron 50.0%
TGAATCGAACGGCGAAGGTA+AGG - chr1_3:66480390-66480409 Msa0134930:intron 50.0%
GAATCGAACGGCGAAGGTAA+GGG - chr1_3:66480391-66480410 Msa0134930:intron 50.0%
AGGTCTCTCTCTCTCTCACA+TGG + chr1_3:66480468-66480487 Msa0134940:intron 50.0%
GAGAGAGTAGAGCAGGCATT+TGG - chr1_3:66481544-66481563 Msa0134930:intron 50.0%
! GTTTGTTAGGATTCACCGGC+AGG - chr1_3:66481575-66481594 Msa0134930:intron 50.0%
GGTTGAGTCTGTGACACAAC+AGG + chr1_3:66481636-66481655 Msa0134940:intron 50.0%
TGGGTGAGTACTATCCAGGA+CGG - chr1_3:66482003-66482022 Msa0134930:intron 50.0%
AGCACGTGAGTCACATAGCT+AGG + chr1_3:66482577-66482596 None:intergenic 50.0%
ATCTGAGGGATGAGGCTCTT+GGG + chr1_3:66483093-66483112 None:intergenic 50.0%
AATCTGAGGGATGAGGCTCT+TGG + chr1_3:66483094-66483113 None:intergenic 50.0%
!! GGTTGATGGGTCGAATCTGA+GGG + chr1_3:66483107-66483126 None:intergenic 50.0%
!! GAGTTGGTGTGAGACTGTGA+AGG + chr1_3:66483176-66483195 None:intergenic 50.0%
TGTTGTCTCCTCCTAGGCTT+AGG + chr1_3:66483219-66483238 None:intergenic 50.0%
ATGACGTGTTGTCTCCTCCT+AGG + chr1_3:66483225-66483244 None:intergenic 50.0%
! ACGTGCTATTGGTGAAGCGA+AGG + chr1_3:66483320-66483339 None:intergenic 50.0%
ACCAATAGCACGTAACCCAC+TGG - chr1_3:66483327-66483346 Msa0134930:intron 50.0%
CCAATAGCACGTAACCCACT+GGG - chr1_3:66483328-66483347 Msa0134930:intron 50.0%
GGCGTCGTTTCTTCAATCTC+CGG - chr1_3:66483429-66483448 Msa0134930:CDS 50.0%
! AATCTCCGGCGACGTTTTTC+CGG - chr1_3:66483443-66483462 Msa0134930:CDS 50.0%
TCACATTATCCCTATCCCGC+CGG + chr1_3:66483465-66483484 None:intergenic 50.0%
GCGGGATAGGGATAATGTGA+AGG - chr1_3:66483465-66483484 Msa0134930:CDS 50.0%
GAGACTAATCCACCAAGTGG+GGG + chr1_3:66483577-66483596 None:intergenic 50.0%
GTGTGACGGCGTCTAATATG+AGG + chr1_3:66483610-66483629 None:intergenic 50.0%
AGTCGGCGTGGTGTTCACAA+CGG + chr1_3:66477148-66477167 None:intergenic 55.0%
AAAACGCGCCTAGATTGCGG+CGG - chr1_3:66477303-66477322 Msa0134930:CDS 55.0%
GCTGGGAGAGGTTCATTAGC+AGG + chr1_3:66478656-66478675 None:intergenic 55.0%
ATGAACCTCTCCCAGCCATC+CGG - chr1_3:66478660-66478679 Msa0134930:intron 55.0%
! TGTACAACTCAGGGCGCTTC+CGG + chr1_3:66478682-66478701 None:intergenic 55.0%
! ATAGGAGCTGGTACTGGGAC+CGG + chr1_3:66478753-66478772 None:intergenic 55.0%
!! GAAGGGTTGGCTTATGTGGC+TGG - chr1_3:66480921-66480940 Msa0134930:intron 55.0%
CACATTCTGTGTGCTCCCTC+AGG + chr1_3:66481602-66481621 Msa0134940:intron 55.0%
! GGGAGCACACAGAATGTGTC+CGG - chr1_3:66481604-66481623 Msa0134930:intron 55.0%
TGGGTCGAATCTGAGGGATG+AGG + chr1_3:66483101-66483120 None:intergenic 55.0%
!! GGGTTGATGGGTCGAATCTG+AGG + chr1_3:66483108-66483127 None:intergenic 55.0%
! GACTGTGAAGGAGAAGCGTG+AGG + chr1_3:66483164-66483183 None:intergenic 55.0%
CCTCCTAGGCTTAGGTACCA+TGG + chr1_3:66483211-66483230 None:intergenic 55.0%
CCATGGTACCTAAGCCTAGG+AGG - chr1_3:66483208-66483227 Msa0134930:intron 55.0%
! GCTAGTGGGTCCTACTTTGG+AGG + chr1_3:66483248-66483267 None:intergenic 55.0%
TGTAAGGGATGCTGCTGCTG+GGG + chr1_3:66483275-66483294 None:intergenic 55.0%
GTGTAAGGGATGCTGCTGCT+GGG + chr1_3:66483276-66483295 None:intergenic 55.0%
!! GCGAGCGTTGAGTGGTGTAA+GGG + chr1_3:66483290-66483309 None:intergenic 55.0%
!! AGCGAGCGTTGAGTGGTGTA+AGG + chr1_3:66483291-66483310 None:intergenic 55.0%
!! CCCAGTGGGTTACGTGCTAT+TGG + chr1_3:66483331-66483350 None:intergenic 55.0%
! TCTGCGGCAGTGGTGTTGAA+GGG + chr1_3:66483381-66483400 None:intergenic 55.0%
TGAGGAGCTGTCACTCTCTG+CGG + chr1_3:66483397-66483416 None:intergenic 55.0%
AGAGAGTGACAGCTCCTCAC+CGG - chr1_3:66483398-66483417 Msa0134930:intron 55.0%
AGCTCCTCACCGGAGTACAA+CGG - chr1_3:66483408-66483427 Msa0134930:intron 55.0%
GAAACGACGCCGTTGTACTC+CGG + chr1_3:66483420-66483439 None:intergenic 55.0%
! GACGTTTTTCCGGCGGGATA+GGG - chr1_3:66483453-66483472 Msa0134930:CDS 55.0%
TCAAAGATGAGGCCCCCACT+TGG - chr1_3:66483562-66483581 Msa0134930:intron 55.0%
GTCGGCGTGGTGTTCACAAC+GGG + chr1_3:66477147-66477166 None:intergenic 60.0%
! TAGGAGCTGGTACTGGGACC+GGG + chr1_3:66478752-66478771 None:intergenic 60.0%
GATTCACCGGCAGGACCTGA+GGG - chr1_3:66481584-66481603 Msa0134930:intron 60.0%
!! GTGACACAACAGGGGCACTC+CGG + chr1_3:66481626-66481645 Msa0134940:intron 60.0%
GAGGGATGAGGCTCTTGGGT+AGG + chr1_3:66483089-66483108 None:intergenic 60.0%
! GGGGCTAGTGGGTCCTACTT+TGG + chr1_3:66483251-66483270 None:intergenic 60.0%
GGTGTAAGGGATGCTGCTGC+TGG + chr1_3:66483277-66483296 None:intergenic 60.0%
!! GAGAGTGAGCGAGCGTTGAG+TGG + chr1_3:66483298-66483317 None:intergenic 60.0%
AACAACCCCTTCCTGCTGGC+TGG + chr1_3:66483358-66483377 None:intergenic 60.0%
AGGGAACAACCCCTTCCTGC+TGG + chr1_3:66483362-66483381 None:intergenic 60.0%
! CTCTGCGGCAGTGGTGTTGA+AGG + chr1_3:66483382-66483401 None:intergenic 60.0%
! CGACGTTTTTCCGGCGGGAT+AGG - chr1_3:66483452-66483471 Msa0134930:CDS 60.0%
AAGATGAGGCCCCCACTTGG+TGG - chr1_3:66483565-66483584 Msa0134930:intron 60.0%
! CAACTCAGGGCGCTTCCGGA+TGG + chr1_3:66478678-66478697 None:intergenic 65.0%
GGATTCACCGGCAGGACCTG+AGG - chr1_3:66481583-66481602 Msa0134930:intron 65.0%
TGTGCTCCCTCAGGTCCTGC+CGG + chr1_3:66481593-66481612 Msa0134940:intron 65.0%
AGGGATGCTGCTGCTGGGGA+GGG + chr1_3:66483271-66483290 None:intergenic 65.0%
AAGGGATGCTGCTGCTGGGG+AGG + chr1_3:66483272-66483291 None:intergenic 65.0%
! ACCCCTTCCTGCTGGCTGGT+GGG + chr1_3:66483354-66483373 None:intergenic 65.0%
! AACCCCTTCCTGCTGGCTGG+TGG + chr1_3:66483355-66483374 None:intergenic 65.0%
GCTGTCACTCTCTGCGGCAG+TGG + chr1_3:66483391-66483410 None:intergenic 65.0%
GACGCCGTTGTACTCCGGTG+AGG + chr1_3:66483415-66483434 None:intergenic 65.0%
! CTCCGGCGACGTTTTTCCGG+CGG - chr1_3:66483446-66483465 Msa0134930:CDS 65.0%
! TCCGGCGACGTTTTTCCGGC+GGG - chr1_3:66483447-66483466 Msa0134930:CDS 65.0%
TCCCGCCGGAAAAACGTCGC+CGG + chr1_3:66483451-66483470 None:intergenic 65.0%
CGCTTCCGGATGGCTGGGAG+AGG + chr1_3:66478668-66478687 None:intergenic 70.0%
! CAGGGCGCTTCCGGATGGCT+GGG + chr1_3:66478673-66478692 None:intergenic 70.0%
! TCAGGGCGCTTCCGGATGGC+TGG + chr1_3:66478674-66478693 None:intergenic 70.0%
! GCTGCTGGGGAGGGGCTAGT+GGG + chr1_3:66483262-66483281 None:intergenic 70.0%
TGCTGCTGGGGAGGGGCTAG+TGG + chr1_3:66483263-66483282 None:intergenic 70.0%
GGGATGCTGCTGCTGGGGAG+GGG + chr1_3:66483270-66483289 None:intergenic 70.0%
! TGCTGGCTGGTGGGCCCAGT+GGG + chr1_3:66483345-66483364 None:intergenic 70.0%
GGCCCACCAGCCAGCAGGAA+GGG - chr1_3:66483349-66483368 Msa0134930:intron 70.0%
GCCCACCAGCCAGCAGGAAG+GGG - chr1_3:66483350-66483369 Msa0134930:intron 70.0%
! CTGCTGGCTGGTGGGCCCAG+TGG + chr1_3:66483346-66483365 None:intergenic 75.0%
CACTGGGCCCACCAGCCAGC+AGG - chr1_3:66483344-66483363 Msa0134930:intron 75.0%
GGGCCCACCAGCCAGCAGGA+AGG - chr1_3:66483348-66483367 Msa0134930:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 66476572 66483911 66476572 ID=Msa0134930;Name=Msa0134930
chr1_3 mRNA 66476572 66483911 66476572 ID=Msa0134930-mRNA-1;Parent=Msa0134930;Name=Msa0134930-mRNA-1;_AED=0.26;_eAED=0.26;_QI=188|1|1|1|0.83|1|7|254|413
chr1_3 exon 66476572 66477488 66476572 ID=Msa0134930-mRNA-1:exon:22691;Parent=Msa0134930-mRNA-1
chr1_3 exon 66478404 66478537 66478404 ID=Msa0134930-mRNA-1:exon:22690;Parent=Msa0134930-mRNA-1
chr1_3 exon 66479105 66479196 66479105 ID=Msa0134930-mRNA-1:exon:22689;Parent=Msa0134930-mRNA-1
chr1_3 exon 66479311 66479357 66479311 ID=Msa0134930-mRNA-1:exon:22688;Parent=Msa0134930-mRNA-1
chr1_3 exon 66479512 66479600 66479512 ID=Msa0134930-mRNA-1:exon:22687;Parent=Msa0134930-mRNA-1
chr1_3 exon 66483423 66483540 66483423 ID=Msa0134930-mRNA-1:exon:22686;Parent=Msa0134930-mRNA-1
chr1_3 exon 66483625 66483911 66483625 ID=Msa0134930-mRNA-1:exon:22685;Parent=Msa0134930-mRNA-1
chr1_3 five_prime_UTR 66483724 66483911 66483724 ID=Msa0134930-mRNA-1:five_prime_utr;Parent=Msa0134930-mRNA-1
chr1_3 CDS 66483625 66483723 66483625 ID=Msa0134930-mRNA-1:cds;Parent=Msa0134930-mRNA-1
chr1_3 CDS 66483423 66483540 66483423 ID=Msa0134930-mRNA-1:cds;Parent=Msa0134930-mRNA-1
chr1_3 CDS 66479512 66479600 66479512 ID=Msa0134930-mRNA-1:cds;Parent=Msa0134930-mRNA-1
chr1_3 CDS 66479311 66479357 66479311 ID=Msa0134930-mRNA-1:cds;Parent=Msa0134930-mRNA-1
chr1_3 CDS 66479105 66479196 66479105 ID=Msa0134930-mRNA-1:cds;Parent=Msa0134930-mRNA-1
chr1_3 CDS 66478404 66478537 66478404 ID=Msa0134930-mRNA-1:cds;Parent=Msa0134930-mRNA-1
chr1_3 CDS 66476826 66477488 66476826 ID=Msa0134930-mRNA-1:cds;Parent=Msa0134930-mRNA-1
chr1_3 three_prime_UTR 66476572 66476825 66476572 ID=Msa0134930-mRNA-1:three_prime_utr;Parent=Msa0134930-mRNA-1
Gene Sequence

>Msa0134930

ATGGGGAAGAAACTTGAACTCCTCAAAGACAAGGAAACTGCTAAAGTTGAAGCTGTTCTTCAACTCATCAGAAAACAAACCCCTCTCACTGTCAAACAGGAAAAGTTCTGTAACTATGCTTGTGTGAAACGGTTTCTGAAAGTGAAAGGAGATAATGTGAAAAAAGCTGCTAAACAACTAAGAGCTTGTCTTTCATGGAGAGAAAGCATTGTTACTGATCAATTGATAGCAGATGATTTCTCAGCTGAATTATCTGAAGGGTTGGCTTATGTGGCTGGTCATGATGATGAATCCAGACCTGTTTTGATTTTCCGCATGAAACAAGACTATCAGAAGTTGCATTCTCAGAAACTGTTCTTCACTCGTTTATTGGCTTTCACAATGGAGGTGGCCATTTCAAGCATGCCAAAAAATGTTGAACAATTTGTCATGCTCCTAGATGCAAGCTTTTACAGATCAGCATCTGGATTTATGAACTTGTTGTTGGGAGCATTGAAAATTGTGGGTGAGTACTATCCAGGACGGTTAAGCAAAGCATTTGTGATAGACCCTCCATCACTTTTTGCATACTTGTGGAAGGGTGTTCGTCCATTCGTTGAGCTATCAACATGTACAACAATAGTATCATCCCTAGATTTCGAACCATCAATGGACTACAACGACTTCTCAACCTACCCAAGAGCCTCATCCCTCAGATTCGACCCATCAACCCTAAAATCAACGGCTAAGATCGGTTCATGCTCATCCTCACGCTTCTCCTTCACAGTCTCACACCAACTCGACTCACTCAAACCATGGTACCTAAGCCTAGGAGGAGACAACACGTCATCCTCCAAAGTAGGACCCACTAGCCCCTCCCCAGCAGCAGCATCCCTTACACCACTCAACGCTCGCTCACTCTCCTTCGCTTCACCAATAGCACGTAACCCACTGGGCCCACCAGCCAGCAGGAAGGGGTTGTTCCCTTCAACACCACTGCCGCAGAGAGTGACAGCTCCTCACCGGAGTACAACGGCGTCGTTTCTTCAATCTCCGGCGACGTTTTTCCGGCGGGATAGGGATAATGTGAAGGTGGAAAGAGGTAGAGAATCATTTTTGGCGTATGTGAAATTCTATAGAAGGGCGTATGATGAAATGGTTTATAGGTCAAAGATGAGGCCCCCACTTGGTGGATTAGTCTCTATTGTTTCACCTCATATTAGACGCCGTCACACTCACCTTTCCGTTTCTCAGCGTTTCTAA
Protein sequence

>Msa0134930

MGKKLELLKDKETAKVEAVLQLIRKQTPLTVKQEKFCNYACVKRFLKVKGDNVKKAAKQLRACLSWRESIVTDQLIADDFSAELSEGLAYVAGHDDESRPVLIFRMKQDYQKLHSQKLFFTRLLAFTMEVAISSMPKNVEQFVMLLDASFYRSASGFMNLLLGALKIVGEYYPGRLSKAFVIDPPSLFAYLWKGVRPFVELSTCTTIVSSLDFEPSMDYNDFSTYPRASSLRFDPSTLKSTAKIGSCSSSRFSFTVSHQLDSLKPWYLSLGGDNTSSSKVGPTSPSPAAASLTPLNARSLSFASPIARNPLGPPASRKGLFPSTPLPQRVTAPHRSTTASFLQSPATFFRRDRDNVKVERGRESFLAYVKFYRRAYDEMVYRSKMRPPLGGLVSIVSPHIRRRHTHLSVSQRF*