AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1143930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1143930 MtrunA17_Chr4g0066941 96.491 513 5 3 1 500 1 513 0.0 964
Msa1143930 MtrunA17_Chr2g0286151 67.137 496 126 6 18 500 11 482 0.0 558
Msa1143930 MtrunA17_Chr2g0286151 34.810 158 69 3 270 393 10 167 9.21e-17 82.8
Msa1143930 MtrunA17_Chr1g0195891 52.785 377 127 10 5 367 4 343 2.36e-112 336
Msa1143930 MtrunA17_Chr1g0195891 49.333 75 36 1 320 392 92 166 5.65e-17 82.4
Msa1143930 MtrunA17_Chr7g0249221 44.878 410 175 13 42 441 27 395 5.88e-103 315
Msa1143930 MtrunA17_Chr5g0438891 39.227 362 157 12 42 397 36 340 4.26e-72 234
Msa1143930 MtrunA17_Chr5g0438891 48.780 82 42 0 39 120 75 156 1.17e-19 91.3
Msa1143930 MtrunA17_Chr5g0438891 42.391 92 52 1 28 119 248 338 2.24e-15 78.2
Msa1143930 MtrunA17_Chr3g0116431 35.356 379 157 9 37 394 166 477 2.56e-64 217
Msa1143930 MtrunA17_Chr3g0116431 40.964 83 42 3 320 397 172 252 2.27e-11 66.2
Msa1143930 MtrunA17_Chr4g0058011 37.500 376 153 14 38 396 227 537 5.15e-63 215
Msa1143930 MtrunA17_Chr8g0356241 32.609 368 200 10 42 392 138 474 4.94e-46 167
Msa1143930 MtrunA17_Chr8g0356241 33.898 177 79 4 21 163 167 339 1.52e-26 112
Msa1143930 MtrunA17_Chr8g0356241 35.135 185 73 4 35 173 302 485 1.40e-25 109
Msa1143930 MtrunA17_Chr8g0356241 42.683 82 39 3 320 393 139 220 1.63e-12 69.7
Msa1143930 MtrunA17_Chr1g0195901 57.303 89 35 2 396 484 1 86 2.59e-15 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1143930 AT5G18550.1 51.969 508 183 15 3 493 2 465 4.97e-146 427
Msa1143930 AT5G18550.4 53.669 477 166 14 3 462 2 440 1.97e-144 422
Msa1143930 AT2G47850.1 51.535 456 170 9 20 464 16 431 4.15e-144 422
Msa1143930 AT2G47850.3 51.535 456 170 9 20 464 16 431 4.15e-144 422
Msa1143930 AT5G18550.3 53.680 462 164 13 40 493 14 433 1.86e-141 414
Msa1143930 AT5G18550.2 50.296 507 180 15 3 493 2 452 8.72e-138 405
Msa1143930 AT3G06410.1 56.713 432 138 13 3 415 2 403 1.28e-131 390
Msa1143930 AT2G47850.2 46.711 456 166 10 20 464 16 405 2.79e-119 357
Msa1143930 AT3G02830.1 44.828 377 149 8 41 408 36 362 1.74e-97 300
Msa1143930 AT3G02830.1 42.857 84 47 1 310 392 28 111 7.68e-14 73.6
Msa1143930 AT3G02830.2 44.828 377 149 8 41 408 16 342 2.16e-97 299
Msa1143930 AT3G02830.2 42.857 84 47 1 310 392 8 91 8.04e-14 73.6
Msa1143930 AT2G47850.4 50.578 346 124 8 126 464 4 309 3.87e-94 290
Msa1143930 AT2G47850.4 51.765 85 41 0 79 163 156 240 4.75e-23 100
Msa1143930 AT2G47850.4 39.773 88 44 2 34 116 156 239 7.99e-16 79.3
Msa1143930 AT1G04990.1 37.360 356 152 11 42 392 44 333 2.29e-63 212
Msa1143930 AT1G04990.1 40.833 120 69 2 305 423 73 191 4.45e-21 95.9
Msa1143930 AT1G04990.1 42.683 82 47 0 40 121 85 166 2.95e-17 84.3
Msa1143930 AT1G04990.1 37.273 110 59 3 89 195 260 362 2.89e-12 68.9
Msa1143930 AT1G04990.6 37.360 356 152 11 42 392 44 333 2.29e-63 212
Msa1143930 AT1G04990.6 40.833 120 69 2 305 423 73 191 4.45e-21 95.9
Msa1143930 AT1G04990.6 42.683 82 47 0 40 121 85 166 2.95e-17 84.3
Msa1143930 AT1G04990.6 37.273 110 59 3 89 195 260 362 2.89e-12 68.9
Msa1143930 AT1G04990.2 37.360 356 152 11 42 392 44 333 2.29e-63 212
Msa1143930 AT1G04990.2 40.833 120 69 2 305 423 73 191 4.45e-21 95.9
Msa1143930 AT1G04990.2 42.683 82 47 0 40 121 85 166 2.95e-17 84.3
Msa1143930 AT1G04990.2 37.273 110 59 3 89 195 260 362 2.89e-12 68.9
Msa1143930 AT2G32930.3 32.225 481 229 17 42 494 14 425 2.30e-62 210
Msa1143930 AT2G32930.3 39.286 84 51 0 34 117 50 133 9.46e-16 79.7
Msa1143930 AT2G32930.2 32.225 481 229 17 42 494 41 452 4.17e-62 210
Msa1143930 AT2G32930.2 39.759 83 50 0 34 116 77 159 1.15e-15 79.7
Msa1143930 AT5G63260.1 38.360 378 158 14 42 403 98 416 1.33e-60 205
Msa1143930 AT5G63260.1 38.961 77 46 1 40 115 329 405 1.08e-13 73.6
Msa1143930 AT1G04990.5 36.338 355 137 12 42 392 44 313 4.84e-59 200
Msa1143930 AT1G04990.5 40.833 120 69 2 305 423 73 191 4.00e-21 95.5
Msa1143930 AT1G04990.5 42.683 82 47 0 40 121 85 166 3.73e-17 83.6
Msa1143930 AT2G32930.1 32.017 481 226 18 42 494 41 448 3.40e-58 199
Msa1143930 AT5G16540.1 36.310 336 161 9 23 348 23 315 3.67e-58 197
Msa1143930 AT5G16540.1 53.261 92 41 1 315 404 236 327 4.38e-26 110
Msa1143930 AT5G16540.1 51.948 77 37 0 87 163 240 316 3.87e-19 89.7
Msa1143930 AT5G16540.1 46.667 75 38 1 320 392 85 159 8.66e-17 82.4
Msa1143930 AT5G16540.1 39.394 99 55 2 318 415 38 132 1.12e-12 70.1
Msa1143930 AT5G16540.3 36.310 336 161 9 23 348 2 294 5.80e-58 196
Msa1143930 AT5G16540.3 53.261 92 41 1 315 404 215 306 4.12e-26 109
Msa1143930 AT5G16540.3 51.948 77 37 0 87 163 219 295 4.39e-19 89.0
Msa1143930 AT5G16540.3 46.667 75 38 1 320 392 64 138 9.66e-17 82.0
Msa1143930 AT5G16540.3 39.394 99 55 2 318 415 17 111 1.12e-12 69.7
Msa1143930 AT5G63260.2 36.802 394 158 15 42 403 98 432 3.19e-57 197
Msa1143930 AT5G63260.2 38.961 77 46 1 40 115 345 421 1.20e-13 73.6
Msa1143930 AT5G16540.2 35.777 341 149 11 23 348 23 308 1.56e-55 190
Msa1143930 AT5G16540.2 47.778 90 42 1 315 404 236 320 2.08e-20 93.2
Msa1143930 AT5G16540.2 46.667 75 38 1 320 392 85 159 8.32e-17 82.4
Msa1143930 AT5G16540.2 39.394 99 55 2 318 415 38 132 1.06e-12 70.1
Msa1143930 AT5G16540.4 47.692 195 84 5 23 214 2 181 2.81e-55 186
Msa1143930 AT5G16540.4 33.553 152 92 2 320 469 64 208 3.56e-17 82.0
Msa1143930 AT5G16540.4 60.000 55 20 1 315 367 215 269 2.62e-14 73.6
Msa1143930 AT5G16540.4 39.394 99 55 2 318 415 17 111 6.53e-13 69.3
Msa1143930 AT3G48440.1 35.156 384 167 13 31 391 93 417 3.19e-55 191
Msa1143930 AT3G48440.1 37.500 80 49 1 40 118 341 420 3.20e-13 72.0
Msa1143930 AT3G48440.1 29.508 183 68 5 313 440 101 277 5.22e-13 71.2
Msa1143930 AT1G04990.3 34.219 301 129 10 97 392 16 252 3.54e-41 150
Msa1143930 AT1G04990.3 43.000 100 55 2 325 423 12 110 1.61e-17 84.0
Msa1143930 AT1G04990.3 43.478 69 39 0 53 121 17 85 2.09e-14 74.7
Msa1143930 AT1G04990.3 37.273 110 59 3 89 195 179 281 1.67e-12 68.9
Msa1143930 AT1G04990.4 33.000 300 114 11 97 392 16 232 4.38e-37 139
Msa1143930 AT1G04990.4 43.000 100 55 2 325 423 12 110 1.19e-17 84.0
Msa1143930 AT1G04990.4 43.478 69 39 0 53 121 17 85 2.46e-14 74.3
Msa1143930 AT3G12680.1 41.060 151 61 3 39 163 219 367 1.41e-32 130
Msa1143930 AT3G12680.1 40.331 181 62 6 34 171 329 506 2.59e-28 118
Msa1143930 AT3G12680.1 42.969 128 64 3 42 163 171 295 2.96e-27 115
Msa1143930 AT3G12680.1 32.500 200 74 5 36 174 259 458 3.94e-23 103
Msa1143930 AT3G12680.1 48.810 84 34 1 318 392 416 499 3.46e-19 90.9
Msa1143930 AT3G12680.1 31.250 144 70 3 312 427 258 400 7.40e-16 80.5
Msa1143930 AT3G12680.1 38.614 101 54 3 320 412 172 272 1.07e-13 73.9
Msa1143930 AT3G12680.1 46.575 73 38 1 320 392 223 294 2.21e-13 72.8
Msa1143930 AT1G48195.1 46.250 80 41 1 316 393 3 82 4.78e-19 82.0
Msa1143930 AT1G48195.1 46.053 76 41 0 86 161 5 80 1.01e-16 75.5
Msa1143930 AT1G48195.1 37.662 77 47 1 40 115 4 80 1.89e-11 60.5

Find 229 sgRNAs with CRISPR-Local

Find 378 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAAACTGGTTCGGATTTC+TGG 0.117451 7_4:+19833838 None:intergenic
TCCTGCTGATCAGGCCTTTC+AGG 0.127139 7_4:+19831874 None:intergenic
TCATTTGTCCAGGGCCCTTA+TGG 0.161593 7_4:-19832261 Msa1143930:CDS
AAAACAGGGGACTGTAAATT+TGG 0.217295 7_4:-19831835 Msa1143930:CDS
TGACAAGTAAACTGATAAAA+AGG 0.223297 7_4:+19829614 None:intergenic
GTTGGTTCGACGCAGCTTTA+TGG 0.252629 7_4:-19832060 Msa1143930:CDS
TTGTGATTGGTTTAGGTTAT+TGG 0.258647 7_4:-19833137 Msa1143930:intron
TAAGGGCTCCAGCCTGAAAA+AGG 0.262944 7_4:+19832210 None:intergenic
AGGACGGGATCGTGCAAATT+TGG 0.273979 7_4:-19832730 Msa1143930:CDS
CGGTAAACCTTTCGATATCT+TGG 0.304126 7_4:+19829824 None:intergenic
TTCAGGCTGGAGCCCTTATC+AGG 0.307461 7_4:-19832205 Msa1143930:intron
ACTCATGGAGGGTCTCAAAT+AGG 0.308129 7_4:-19830190 Msa1143930:three_prime_UTR
GGATGAAGCAGGCTCCTTGC+TGG 0.312902 7_4:+19830441 None:intergenic
CATTTGTCCAGGGCCCTTAT+GGG 0.325235 7_4:-19832260 Msa1143930:CDS
TACCGTGAAGAGAAGTTATC+AGG 0.333179 7_4:-19829806 Msa1143930:three_prime_UTR
GGCTGTACAGTTTGATAAAT+AGG 0.338710 7_4:+19832348 None:intergenic
AATGACTGTTGGACCTGAAC+TGG 0.339111 7_4:+19830149 None:intergenic
ACGGGCTGTCCAACTCGTTC+TGG 0.343305 7_4:+19833089 None:intergenic
ATTGGAGCTGCGAGGATTGC+CGG 0.347654 7_4:-19833119 Msa1143930:CDS
GCTGGTCCTTACCAATCTTC+TGG 0.357551 7_4:-19831943 Msa1143930:CDS
GCTGGTCCTTACCAATCTTC+TGG 0.357551 7_4:-19831973 Msa1143930:CDS
TCTAGGATGGTGATACTTGC+AGG 0.363592 7_4:+19832702 None:intergenic
GCAGGGTATGGTGGATTGGT+TGG 0.368471 7_4:-19833511 Msa1143930:intron
TTGGTTCGACGCAGCTTTAT+GGG 0.368819 7_4:-19832059 Msa1143930:CDS
TGCTGACATTCCTGCTGATC+AGG 0.370843 7_4:+19831865 None:intergenic
TCACCAACAACCGTCTATAC+TGG 0.371079 7_4:-19832021 Msa1143930:CDS
GACATTACCATTGGCCCATA+AGG 0.373452 7_4:+19832246 None:intergenic
CTGATTGTATCTATTATTTG+AGG 0.384105 7_4:-19833453 Msa1143930:CDS
CTGGATCCTGATGCAAGTTC+AGG 0.386934 7_4:+19830460 None:intergenic
AAAAGCAAGTTGCGACTGTA+TGG 0.387335 7_4:+19830032 None:intergenic
GCTCATTGATGATGACATTC+TGG 0.391929 7_4:+19830420 None:intergenic
CAACCATCTTCTCAGAGTTC+CGG 0.392756 7_4:-19830334 Msa1143930:CDS
TGTCAGCATTACATGAAAAC+AGG 0.398214 7_4:-19831850 Msa1143930:CDS
AGTAAAATGCTTGACTTGTT+GGG 0.398533 7_4:-19829719 Msa1143930:three_prime_UTR
AGAAACTGGTTCGGATTTCT+GGG 0.399991 7_4:+19833839 None:intergenic
AAAGTGAACCTTAGTCCTAT+TGG 0.411454 7_4:-19831769 Msa1143930:CDS
TGAATTAACCACCTGGCAAA+CGG 0.411779 7_4:+19833070 None:intergenic
GGTGCTACTTGTGGTGGCAC+TGG 0.412279 7_4:+19830297 None:intergenic
GGTCCCTCAACCGGTCCTTC+AGG 0.414102 7_4:-19831922 Msa1143930:CDS
TCTTGGGAACAATAGCAAAC+AGG 0.414608 7_4:+19829841 None:intergenic
CAATCTTCTGGTCCCTCAGC+TGG 0.414974 7_4:-19831961 Msa1143930:CDS
CAATCCTCTGGTCCCTCAGC+TGG 0.414974 7_4:-19831991 Msa1143930:CDS
TCTACATGGCTCATTTGTCC+AGG 0.415319 7_4:-19832271 Msa1143930:CDS
GCACCGACGGAAGTCCATTC+CGG 0.418324 7_4:+19833645 None:intergenic
AAGAAACTAGAGTGAGAAAC+TGG 0.419904 7_4:+19833825 None:intergenic
AAAACGGGACAATGCAAGTT+TGG 0.420191 7_4:-19832471 Msa1143930:CDS
CCCACAGGATAGGGTGCAAC+TGG 0.421391 7_4:+19830532 None:intergenic
AGAGGTGAAACTTGGGGAAC+TGG 0.421536 7_4:+19832390 None:intergenic
ACCTGAAAGGCCTGATCAGC+AGG 0.421548 7_4:-19831875 Msa1143930:CDS
GCATTGGCAGAGGTGAAACT+TGG 0.425784 7_4:+19832382 None:intergenic
CGATTGACTGTCTTTACTCA+TGG 0.427704 7_4:-19830205 Msa1143930:three_prime_UTR
AGTCCGGGACATACCTGATA+AGG 0.428673 7_4:+19832192 None:intergenic
ATAGGACTAAGGTTCACTTT+TGG 0.429387 7_4:+19831772 None:intergenic
GACTTTGTCAACGGTTGTAC+CGG 0.430550 7_4:-19830374 Msa1143930:CDS
TATCCTGTGGGTTCCGCCAT+TGG 0.430848 7_4:-19830520 Msa1143930:CDS
AGTTGGACAGCCCGTTTGCC+AGG 0.438645 7_4:-19833081 Msa1143930:intron
TCAAGCTTTCGTGTGAGATC+AGG 0.441319 7_4:-19829594 Msa1143930:three_prime_UTR
AAGCAGATGGACTGTAACTC+AGG 0.442386 7_4:+19830572 None:intergenic
GGGCGCAAAGGAAGGCCAAT+AGG 0.442531 7_4:+19831754 None:intergenic
GAATTAACCACCTGGCAAAC+GGG 0.443512 7_4:+19833071 None:intergenic
CAATCTTCTGGTCCCTCAAC+CGG 0.448847 7_4:-19831931 Msa1143930:CDS
TTGGAGCTGCGAGGATTGCC+GGG 0.449469 7_4:-19833118 Msa1143930:CDS
TGTATCTATTATTTGAGGAC+AGG 0.449948 7_4:-19833448 Msa1143930:CDS
CCCTCAAAACAGAGAATGAA+TGG 0.451293 7_4:+19833779 None:intergenic
GTGTTCCTATTATGTGAAAA+CGG 0.451501 7_4:-19832487 Msa1143930:CDS
AAGTAAAATGCTTGACTTGT+TGG 0.455044 7_4:-19829720 Msa1143930:three_prime_UTR
TGGGCATCTGATTGAGAAAC+CGG 0.455710 7_4:+19830355 None:intergenic
GGGTATGGTGGATTGGTTGG+TGG 0.457920 7_4:-19833508 Msa1143930:CDS
AGCACATCGACTGCTTCAGC+TGG 0.458965 7_4:-19830400 Msa1143930:CDS
CCCGTGTCGCTAAATTGTTA+TGG 0.459022 7_4:-19832658 Msa1143930:CDS
GGAAGTACAGGGCTTGCTGC+TGG 0.460193 7_4:+19832102 None:intergenic
CTCCTGATAACTTCTCTTCA+CGG 0.464631 7_4:+19829804 None:intergenic
GCGGTTATGGTTCTAGGTGT+CGG 0.465761 7_4:-19833420 Msa1143930:CDS
GTGGATGGGCATGTGCATAA+TGG 0.466074 7_4:+19829983 None:intergenic
TGTTGCAGGGTATGGTGGAT+TGG 0.467100 7_4:-19833515 Msa1143930:intron
TATGGTGGATTGGTTGGTGG+TGG 0.468504 7_4:-19833505 Msa1143930:CDS
CACCCGCAGGCTGTGGATGA+TGG 0.471640 7_4:+19832433 None:intergenic
ATTTGGCCACCCGCAGGCTG+TGG 0.472332 7_4:+19832426 None:intergenic
CGTACCTTTGTTCCATTGTA+CGG 0.473375 7_4:+19833712 None:intergenic
GGTAAACCTTTCGATATCTT+GGG 0.476022 7_4:+19829825 None:intergenic
CAGCTGAGGGACCAGAAGAT+TGG 0.481828 7_4:+19831962 None:intergenic
ACACTCAACGGAGTACTAGA+AGG 0.482108 7_4:+19832081 None:intergenic
GGTCCTTCACAACAACAATA+TGG 0.484846 7_4:-19832318 Msa1143930:CDS
AACTCGGATGATGAGGATGA+TGG 0.484942 7_4:+19830487 None:intergenic
TATTGGCCTTCCTTTGCGCC+CGG 0.486134 7_4:-19831752 Msa1143930:intron
TGTTCCTATTATGTGAAAAC+GGG 0.487218 7_4:-19832486 Msa1143930:CDS
TTGAGGCCTGAACTTGCATC+AGG 0.491757 7_4:-19830466 Msa1143930:CDS
ACATTACCATTGGCCCATAA+GGG 0.494713 7_4:+19832247 None:intergenic
GTGAATGTTGCAGGGTATGG+TGG 0.494891 7_4:-19833520 Msa1143930:intron
ACTGGGAGTTGCTAAAGAAC+CGG 0.495795 7_4:+19830315 None:intergenic
AGCTGGCTTGACTTTGTCAA+CGG 0.496678 7_4:-19830383 Msa1143930:CDS
TGAACACAAAGACAATTGAT+TGG 0.497325 7_4:+19830123 None:intergenic
TAGATACAATCAGCTTCATC+AGG 0.499288 7_4:+19833463 None:intergenic
CCTTCGTTTCGTCCGTACAA+TGG 0.504041 7_4:-19833724 Msa1143930:exon
CTACCTGAAGGACCGGTTGA+GGG 0.505161 7_4:+19831919 None:intergenic
ATAGGTGAAGGTACCGGCAT+TGG 0.508949 7_4:+19832366 None:intergenic
GATAAAATGGAGTGATAATG+AGG 0.513137 7_4:+19830237 None:intergenic
CTGGTGATGGTGCTATCATT+TGG 0.515476 7_4:+19832409 None:intergenic
GGAGTACTAGAAGGAAGTAC+AGG 0.516255 7_4:+19832090 None:intergenic
ATATCATCATCCGCCGGACA+TGG 0.516601 7_4:-19831800 Msa1143930:CDS
GCCAGTTGCACCCTATCCTG+TGG 0.516851 7_4:-19830533 Msa1143930:CDS
GAACCGGAACTCTGAGAAGA+TGG 0.517115 7_4:+19830331 None:intergenic
TCTAGTACTCCGTTGAGTGT+TGG 0.517479 7_4:-19832078 Msa1143930:CDS
CGGAACTCTGAGAAGATGGT+TGG 0.517807 7_4:+19830335 None:intergenic
AACAGAGCAGAGAGAAGAGA+AGG 0.518824 7_4:-19833890 Msa1143930:five_prime_UTR
TTCCATCATCCACAGCCTGC+GGG 0.519032 7_4:-19832435 Msa1143930:CDS
CGGTTGAGGGACCAGAAGAT+TGG 0.519557 7_4:+19831932 None:intergenic
GCTATCATTTGGCCACCCGC+AGG 0.521595 7_4:+19832420 None:intergenic
ACTCTGATCCGTCGCCGGAA+TGG 0.523998 7_4:-19833659 Msa1143930:CDS
CAGCTGAGGGACCAGAGGAT+TGG 0.524806 7_4:+19831992 None:intergenic
CCATTGGCCCATAAGGGCCC+TGG 0.526364 7_4:+19832253 None:intergenic
GAAGGTACCGGCATTGGCAG+AGG 0.526800 7_4:+19832372 None:intergenic
CTACATGGCTCATTTGTCCA+GGG 0.527744 7_4:-19832270 Msa1143930:CDS
CTGCAGTACTATGCGAGGAC+GGG 0.528562 7_4:-19832745 Msa1143930:intron
GTGCTACTTGTGGTGGCACT+GGG 0.532061 7_4:+19830298 None:intergenic
GGTCCAGTATAGACGGTTGT+TGG 0.532400 7_4:+19832018 None:intergenic
ACTCGGATGATGAGGATGAT+GGG 0.532572 7_4:+19830488 None:intergenic
CATTGGCAGAGGTGAAACTT+GGG 0.537765 7_4:+19832383 None:intergenic
CAAGTATCACCATCCTAGAC+AGG 0.538523 7_4:-19832698 Msa1143930:CDS
GTCCGGGACATACCTGATAA+GGG 0.540447 7_4:+19832193 None:intergenic
AATGGCGGAACCCACAGGAT+AGG 0.542826 7_4:+19830522 None:intergenic
TGCAACTGGCATATCAGAAA+GGG 0.543825 7_4:+19830546 None:intergenic
GGAACTCTGAGAAGATGGTT+GGG 0.544097 7_4:+19830336 None:intergenic
GCGAGGCCACCTCTTCTACA+TGG 0.546491 7_4:-19832285 Msa1143930:CDS
AACTCGTTCTGGATATTCCC+CGG 0.548050 7_4:+19833100 None:intergenic
ACTGGACCTTACCAATCCTC+TGG 0.549245 7_4:-19832003 Msa1143930:CDS
GTACCAATGGCGGAACCCAC+AGG 0.549531 7_4:+19830517 None:intergenic
GTTGCACTCTGATCCGTCGC+CGG 0.554636 7_4:-19833664 Msa1143930:CDS
CATTCACATTGCTTAGCTTG+AGG 0.554771 7_4:+19830264 None:intergenic
TGCAAGTTTGATCATCCTAC+GGG 0.556067 7_4:-19830598 Msa1143930:CDS
ATATTGTTGTTGTGAAGGAC+CGG 0.556322 7_4:+19832320 None:intergenic
CCAGTTGCACCCTATCCTGT+GGG 0.556861 7_4:-19830532 Msa1143930:CDS
GTGCAACTGGCATATCAGAA+AGG 0.557979 7_4:+19830545 None:intergenic
ACTACCTGAAGGACCGGTTG+AGG 0.558770 7_4:+19831918 None:intergenic
ACTAGAGTGAGAAACTGGTT+CGG 0.558999 7_4:+19833830 None:intergenic
AAGGAAGGCCAATAGGACTA+AGG 0.560421 7_4:+19831761 None:intergenic
GAAACTTGGGGAACTGGTGA+TGG 0.560745 7_4:+19832396 None:intergenic
TTGATTGGTGCAATGACTGT+TGG 0.560870 7_4:+19830138 None:intergenic
CTTGGGAACAATAGCAAACA+GGG 0.563429 7_4:+19829842 None:intergenic
ACGGAAGTCCATTCCGGCGA+CGG 0.563671 7_4:+19833651 None:intergenic
GTATAGACGGTTGTTGGTGA+AGG 0.565761 7_4:+19832024 None:intergenic
AGTTTCACCTCTGCCAATGC+CGG 0.567846 7_4:-19832379 Msa1143930:CDS
ATTGTTCCCAAGATATCGAA+AGG 0.568206 7_4:-19829831 Msa1143930:three_prime_UTR
TTCCTGCCGCCTGTCTAGGA+TGG 0.568534 7_4:+19832689 None:intergenic
ACTTCCGTCGGTGCTGATGA+AGG 0.569648 7_4:-19833636 Msa1143930:intron
TTGACTGTCTTTACTCATGG+AGG 0.571021 7_4:-19830202 Msa1143930:three_prime_UTR
GCTGCAGTACTATGCGAGGA+CGG 0.572531 7_4:-19832746 Msa1143930:intron
ATGACTGTTGGACCTGAACT+GGG 0.574035 7_4:+19830150 None:intergenic
AAAGCAAGTTGCGACTGTAT+GGG 0.574997 7_4:+19830033 None:intergenic
TTTATTCAAGATCAAAGAGA+TGG 0.575418 7_4:+19830084 None:intergenic
TGACTGTCTTTACTCATGGA+GGG 0.575436 7_4:-19830201 Msa1143930:three_prime_UTR
GTGCAAGTTTGATCATCCTA+CGG 0.575614 7_4:-19830599 Msa1143930:CDS
ACACCATATTGTTGTTGTGA+AGG 0.575855 7_4:+19832315 None:intergenic
CAAACTGTACAGCCTCCGTC+CGG 0.577193 7_4:-19832339 Msa1143930:CDS
CGCTGGGTATAATGAGTGCA+AGG 0.577555 7_4:+19830646 None:intergenic
CCAGGGCCCTTATGGGCCAA+TGG 0.578875 7_4:-19832253 Msa1143930:CDS
GAGACGACCCATCGTTAGCT+CGG 0.581397 7_4:+19833688 None:intergenic
ATAATCATTACCGGGCGCAA+AGG 0.584792 7_4:+19831742 None:intergenic
CCATTGTACGGACGAAACGA+AGG 0.589644 7_4:+19833724 None:intergenic
TATCATCATCCGCCGGACAT+GGG 0.589789 7_4:-19831799 Msa1143930:CDS
CTCGGATGATGAGGATGATG+GGG 0.590885 7_4:+19830489 None:intergenic
CTGACTACTACCTGAAGGAC+CGG 0.592024 7_4:+19831912 None:intergenic
AGGCCTCAACTCGGATGATG+AGG 0.592496 7_4:+19830480 None:intergenic
TTTACCGCGCCACGGTCACG+TGG 0.593039 7_4:+19833388 None:intergenic
TGCAAGTTCAGGCCTCAACT+CGG 0.595724 7_4:+19830471 None:intergenic
TCCTTCAGGTAGTAGTCAGA+AGG 0.595822 7_4:-19831908 Msa1143930:CDS
CTTTGATCTTGAATAAACCA+TGG 0.599624 7_4:-19830078 Msa1143930:three_prime_UTR
CCATAACAATTTAGCGACAC+GGG 0.599754 7_4:+19832658 None:intergenic
TCAGAAAGGGAAGAAGCAGA+TGG 0.603283 7_4:+19830559 None:intergenic
CATCCTCATCATCCGAGTTG+AGG 0.603884 7_4:-19830483 Msa1143930:CDS
GATGACATTCTGGATGAAGC+AGG 0.604175 7_4:+19830430 None:intergenic
AGATTGGTAAGGACCAGCTG+AGG 0.604660 7_4:+19831948 None:intergenic
AGATTGGTAAGGACCAGCTG+AGG 0.604660 7_4:+19831978 None:intergenic
TGATGGGGCAAGAGTACCAA+TGG 0.604718 7_4:+19830504 None:intergenic
ATTCCATCATCCACAGCCTG+CGG 0.605023 7_4:-19832436 Msa1143930:CDS
GGGGAATATCCAGAACGAGT+TGG 0.606813 7_4:-19833098 Msa1143930:CDS
TTTGGTGCACCCATGTCCGG+CGG 0.607060 7_4:+19831790 None:intergenic
TGATAAATAGGTGAAGGTAC+CGG 0.608014 7_4:+19832360 None:intergenic
AAAGTACAAACCACTCGCAA+CGG 0.608625 7_4:+19832631 None:intergenic
AAACTTACAAAATCCACGCT+GGG 0.608759 7_4:+19830630 None:intergenic
TCAGCTTCATCAGGTCGTTG+TGG 0.608955 7_4:+19833472 None:intergenic
GAGGGACCAGAGGATTGGTA+AGG 0.609630 7_4:+19831997 None:intergenic
TGCGTCGAACCAACACTCAA+CGG 0.610522 7_4:+19832069 None:intergenic
AGGTACGGCCGAGCTAACGA+TGG 0.613122 7_4:-19833696 Msa1143930:CDS
ACAAATGAGCCATGTAGAAG+AGG 0.616318 7_4:+19832276 None:intergenic
TTGGTAAGGTCCAGTATAGA+CGG 0.617115 7_4:+19832011 None:intergenic
GGTACGGCCGAGCTAACGAT+GGG 0.619629 7_4:-19833695 Msa1143930:CDS
GAGGGACCAGAAGATTGGTA+AGG 0.620595 7_4:+19831937 None:intergenic
GAGGGACCAGAAGATTGGTA+AGG 0.620595 7_4:+19831967 None:intergenic
AGCAGATGGACTGTAACTCA+GGG 0.621538 7_4:+19830573 None:intergenic
CATCATCCACAGCCTGCGGG+TGG 0.623790 7_4:-19832432 Msa1143930:CDS
TCCATAACAATTTAGCGACA+CGG 0.624173 7_4:+19832657 None:intergenic
CAAACTTACAAAATCCACGC+TGG 0.625616 7_4:+19830629 None:intergenic
AGTACCTTCATCAGCACCGA+CGG 0.628033 7_4:+19833632 None:intergenic
CCATCCACGTGACCGTGGCG+CGG 0.628156 7_4:-19833392 Msa1143930:intron
AATGAGCCATGTAGAAGAGG+TGG 0.628441 7_4:+19832279 None:intergenic
TTATGGATATCCGTTGCGAG+TGG 0.629078 7_4:-19832641 Msa1143930:intron
ACAGAGCAGAGAGAAGAGAA+GGG 0.629461 7_4:-19833889 Msa1143930:five_prime_UTR
AGGAACACTCATTACCTGAA+AGG 0.629964 7_4:-19831888 Msa1143930:CDS
TCCTTCTGACTACTACCTGA+AGG 0.631642 7_4:+19831907 None:intergenic
ACAGTTTGATAAATAGGTGA+AGG 0.633435 7_4:+19832354 None:intergenic
CATTGTACGGACGAAACGAA+GGG 0.633887 7_4:+19833725 None:intergenic
GTGAGAGACGGTGCTACTTG+TGG 0.638791 7_4:+19830288 None:intergenic
TGGAGCTGCGAGGATTGCCG+GGG 0.640922 7_4:-19833117 Msa1143930:CDS
TTTAACCATCCACGTGACCG+TGG 0.642316 7_4:-19833397 Msa1143930:CDS
GAAACTGGTTCGGATTTCTG+GGG 0.642440 7_4:+19833840 None:intergenic
GTCAGCATTACATGAAAACA+GGG 0.642817 7_4:-19831849 Msa1143930:CDS
GATTGGTAAGGACCAGCTGA+GGG 0.643343 7_4:+19831949 None:intergenic
GATTGGTAAGGACCAGCTGA+GGG 0.643343 7_4:+19831979 None:intergenic
TTAGCTTGAGGTGTGAGAGA+CGG 0.646603 7_4:+19830276 None:intergenic
AGGACCAGCTGAGGGACCAG+AGG 0.646769 7_4:+19831987 None:intergenic
TGCACTCATTATACCCAGCG+TGG 0.650258 7_4:-19830643 Msa1143930:CDS
TGTTGTTGTGAAGGACCGGA+CGG 0.652804 7_4:+19832324 None:intergenic
ATGTAGATATCATCATCCGC+CGG 0.657903 7_4:-19831806 Msa1143930:CDS
AATATGGTGTACTTGTTGCG+AGG 0.663439 7_4:-19832302 Msa1143930:CDS
TCATGCTGCAGTACTATGCG+AGG 0.670087 7_4:-19832750 Msa1143930:intron
GAGTACTAGAAGGAAGTACA+GGG 0.672699 7_4:+19832091 None:intergenic
CGTACAATGGAACAAAGGTA+CGG 0.672974 7_4:-19833711 Msa1143930:exon
ATTGGCAGAGGTGAAACTTG+GGG 0.673579 7_4:+19832384 None:intergenic
ACTTGCATCAGGATCCAGCA+AGG 0.675326 7_4:-19830455 Msa1143930:CDS
TCGTCCGTACAATGGAACAA+AGG 0.678724 7_4:-19833716 Msa1143930:exon
CTGTAACTCAGGGATCCCGT+AGG 0.679795 7_4:+19830583 None:intergenic
GTATCACCATCCTAGACAGG+CGG 0.680328 7_4:-19832695 Msa1143930:CDS
TTTAGGTTATTGGAGCTGCG+AGG 0.685804 7_4:-19833127 Msa1143930:intron
AGAGACGGTGCTACTTGTGG+TGG 0.702854 7_4:+19830291 None:intergenic
TGTTGTGAAGGACCGGACGG+AGG 0.705461 7_4:+19832327 None:intergenic
TGGGGCAAGAGTACCAATGG+CGG 0.727761 7_4:+19830507 None:intergenic
GTTATCAGGAGACTACAATG+AGG 0.728131 7_4:-19829792 Msa1143930:three_prime_UTR
TCAGCATTACATGAAAACAG+GGG 0.793025 7_4:-19831848 Msa1143930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAATGTTTTTTTACTAA+CGG - chr7_4:19830232-19830251 Msa1143930:three_prime_UTR 10.0%
!!! TTATTTTTATGTCATATATT+TGG - chr7_4:19832105-19832124 Msa1143930:CDS 10.0%
!!! ACATTTTTTTTTTTTTTTTG+GGG + chr7_4:19832246-19832265 None:intergenic 10.0%
!!! CACATTTTTTTTTTTTTTTT+GGG + chr7_4:19832247-19832266 None:intergenic 10.0%
!!! TCACATTTTTTTTTTTTTTT+TGG + chr7_4:19832248-19832267 None:intergenic 10.0%
!!! ATGTTTTTTTTTTTTTTTGA+GGG - chr7_4:19832397-19832416 Msa1143930:CDS 10.0%
!! GTTTAATCAAATTAAAATTT+GGG + chr7_4:19832547-19832566 None:intergenic 10.0%
!!! CGGTAAATTTTTATTTTTTA+AGG - chr7_4:19830128-19830147 Msa1143930:three_prime_UTR 15.0%
!!! TATAATGTTTTTTTACTAAC+GGG - chr7_4:19830233-19830252 Msa1143930:three_prime_UTR 15.0%
!!! ATTTTTTTTTTTTTTTTGGG+GGG + chr7_4:19832244-19832263 None:intergenic 15.0%
!!! CATTTTTTTTTTTTTTTTGG+GGG + chr7_4:19832245-19832264 None:intergenic 15.0%
!!! GATGTTTTTTTTTTTTTTTG+AGG - chr7_4:19832396-19832415 Msa1143930:CDS 15.0%
!! CGTTTAATCAAATTAAAATT+TGG + chr7_4:19832548-19832567 None:intergenic 15.0%
!!! TTTTTAAGGTTTTTGTTTTG+AGG - chr7_4:19830142-19830161 Msa1143930:three_prime_UTR 20.0%
!!! TTTTATTCATTGAATTCTGT+CGG - chr7_4:19830268-19830287 Msa1143930:exon 20.0%
!! GCAAATATAATCAATACAAA+AGG + chr7_4:19830725-19830744 None:intergenic 20.0%
!!! TTTTATGAAAAATCGTAACA+GGG - chr7_4:19830981-19831000 Msa1143930:intron 20.0%
!! GCTATTATTATTATCATCAA+AGG + chr7_4:19831878-19831897 None:intergenic 20.0%
!!! TTTTTTTTTTTTTTTTGGGG+GGG + chr7_4:19832243-19832262 None:intergenic 20.0%
!! ACTATTGCATTAAAATACAT+CGG + chr7_4:19832443-19832462 None:intergenic 20.0%
!!! TTAATTTGATTAAACGATTG+TGG - chr7_4:19832552-19832571 Msa1143930:intron 20.0%
!! AAAAGATCAATAAAGACAAA+TGG + chr7_4:19832635-19832654 None:intergenic 20.0%
!!! TTTGTCTTTATTGATCTTTT+TGG - chr7_4:19832635-19832654 Msa1143930:intron 20.0%
!!! TTGTTGTATGTTTTATAATC+AGG - chr7_4:19832823-19832842 Msa1143930:intron 20.0%
!!! TGTTGTATGTTTTATAATCA+GGG - chr7_4:19832824-19832843 Msa1143930:intron 20.0%
!! ATCGAAAAATTGAGATAAAA+TGG + chr7_4:19833279-19833298 None:intergenic 20.0%
!!! TCCTTCAATCTTTTTTTTTT+TGG - chr7_4:19833565-19833584 Msa1143930:intron 20.0%
!! ACCAAAAAAAAAAAGATTGA+AGG + chr7_4:19833569-19833588 None:intergenic 20.0%
!!! TTATTATTTTTGATACACCA+TGG - chr7_4:19833748-19833767 Msa1143930:five_prime_UTR 20.0%
! CTGATTGTATCTATTATTTG+AGG - chr7_4:19830047-19830066 Msa1143930:three_prime_UTR 25.0%
!! ACATGGTGATTGAAATTTTA+GGG - chr7_4:19830332-19830351 Msa1143930:CDS 25.0%
! ATTCAGTTTATGCTCAATTA+TGG - chr7_4:19830448-19830467 Msa1143930:CDS 25.0%
! TTCAGTTTATGCTCAATTAT+GGG - chr7_4:19830449-19830468 Msa1143930:CDS 25.0%
!! CTTTTATGAAAAATCGTAAC+AGG - chr7_4:19830980-19830999 Msa1143930:intron 25.0%
! ACAAAGTTAAGAAGTCAATT+TGG + chr7_4:19831925-19831944 None:intergenic 25.0%
!! AATTGACTTCTTAACTTTGT+TGG - chr7_4:19831925-19831944 Msa1143930:CDS 25.0%
!!! ATTTTTAGTGAACTCTTTTC+TGG - chr7_4:19832072-19832091 Msa1143930:CDS 25.0%
!!! TTTTTAGTGAACTCTTTTCT+GGG - chr7_4:19832073-19832092 Msa1143930:CDS 25.0%
!!! TTTTTTTTTTTTTTTGGGGG+GGG + chr7_4:19832242-19832261 None:intergenic 25.0%
!! ATCTGAACTTTTAAATCTCT+AGG - chr7_4:19832336-19832355 Msa1143930:CDS 25.0%
! AATTACTTGAGCTTGAAAAA+TGG - chr7_4:19832494-19832513 Msa1143930:CDS 25.0%
!! TCAAATTAAAATTTGGGACA+AGG + chr7_4:19832541-19832560 None:intergenic 25.0%
! CAAAATAATATGTGGTTTAG+TGG + chr7_4:19832606-19832625 None:intergenic 25.0%
! TTAATGCAATACTTTGTCTT+TGG - chr7_4:19832671-19832690 Msa1143930:CDS 25.0%
!! GTGTTCATATAATCTTTTTG+TGG - chr7_4:19833393-19833412 Msa1143930:CDS 25.0%
! TTTATTCAAGATCAAAGAGA+TGG + chr7_4:19833419-19833438 None:intergenic 25.0%
!! GTTGCTAAAATTTTCAAAGT+TGG + chr7_4:19833448-19833467 None:intergenic 25.0%
! TTATTCCCAAATGCAAAAAA+GGG + chr7_4:19833616-19833635 None:intergenic 25.0%
! ATTATTCCCAAATGCAAAAA+AGG + chr7_4:19833617-19833636 None:intergenic 25.0%
! GACAAGTAAACTGATAAAAA+GGG + chr7_4:19833888-19833907 None:intergenic 25.0%
! TGACAAGTAAACTGATAAAA+AGG + chr7_4:19833889-19833908 None:intergenic 25.0%
TGGAACAATCTGAAAAAGTT+TGG + chr7_4:19829749-19829768 None:intergenic 30.0%
! TTTCTTCGATTTGAGTGTAA+TGG - chr7_4:19829947-19829966 Msa1143930:three_prime_UTR 30.0%
TGTATCTATTATTTGAGGAC+AGG - chr7_4:19830052-19830071 Msa1143930:three_prime_UTR 30.0%
! GACATGGTGATTGAAATTTT+AGG - chr7_4:19830331-19830350 Msa1143930:CDS 30.0%
!! TTTGTGTTTGTGATTGGTTT+AGG - chr7_4:19830356-19830375 Msa1143930:CDS 30.0%
!! TTGTGATTGGTTTAGGTTAT+TGG - chr7_4:19830363-19830382 Msa1143930:CDS 30.0%
!! CTGTTTTAAACCACTCAAAT+TGG - chr7_4:19830586-19830605 Msa1143930:CDS 30.0%
TTAAACCACTCAAATTGGAA+CGG - chr7_4:19830591-19830610 Msa1143930:CDS 30.0%
! ATTTGTTCCATGAGATTTTG+TGG - chr7_4:19830904-19830923 Msa1143930:intron 30.0%
GTGTTCCTATTATGTGAAAA+CGG - chr7_4:19831013-19831032 Msa1143930:intron 30.0%
TGTTCCTATTATGTGAAAAC+GGG - chr7_4:19831014-19831033 Msa1143930:intron 30.0%
ACAGTTTGATAAATAGGTGA+AGG + chr7_4:19831149-19831168 None:intergenic 30.0%
AAGCAATCAAAACAAAAGTC+CGG + chr7_4:19831327-19831346 None:intergenic 30.0%
AGTTGAGAGATAATCATTAC+CGG + chr7_4:19831770-19831789 None:intergenic 30.0%
CCAAAAAATATAGTACCAGA+GGG + chr7_4:19831852-19831871 None:intergenic 30.0%
TCCAAAAAATATAGTACCAG+AGG + chr7_4:19831853-19831872 None:intergenic 30.0%
ATTTATTATTCCTCGTATGC+AGG - chr7_4:19831955-19831974 Msa1143930:CDS 30.0%
AAGAACCAACTGACAAAAAA+AGG + chr7_4:19832052-19832071 None:intergenic 30.0%
!!! TTTTTTTTTTTTTTGGGGGG+GGG + chr7_4:19832241-19832260 None:intergenic 30.0%
AGTACTGCAAAAATCTTCAA+CGG + chr7_4:19832362-19832381 None:intergenic 30.0%
!!! AACCACATATTATTTTGACG+TGG - chr7_4:19832609-19832628 Msa1143930:intron 30.0%
TTGGACTTCAGGTAAATAAT+AGG - chr7_4:19832690-19832709 Msa1143930:CDS 30.0%
! GATAAAATGGAGTGATAATG+AGG + chr7_4:19833266-19833285 None:intergenic 30.0%
TGAACACAAAGACAATTGAT+TGG + chr7_4:19833380-19833399 None:intergenic 30.0%
CTTTGATCTTGAATAAACCA+TGG - chr7_4:19833422-19833441 Msa1143930:CDS 30.0%
! AAAATTTTCAAAGTTGGCCA+TGG + chr7_4:19833442-19833461 None:intergenic 30.0%
CAAAAAATAGACATGTGGAT+GGG + chr7_4:19833534-19833553 None:intergenic 30.0%
ACAAAAAATAGACATGTGGA+TGG + chr7_4:19833535-19833554 None:intergenic 30.0%
AAGCACAAAAAATAGACATG+TGG + chr7_4:19833539-19833558 None:intergenic 30.0%
!!! CAAAACCCTTTTTTGCATTT+GGG - chr7_4:19833608-19833627 Msa1143930:intron 30.0%
!! AAGTAAAATGCTTGACTTGT+TGG - chr7_4:19833780-19833799 Msa1143930:five_prime_UTR 30.0%
!! AGTAAAATGCTTGACTTGTT+GGG - chr7_4:19833781-19833800 Msa1143930:five_prime_UTR 30.0%
AAGAAACTAGAGTGAGAAAC+TGG + chr7_4:19829678-19829697 None:intergenic 35.0%
! TTCATTCACACGCTTTTCAT+CGG - chr7_4:19829696-19829715 Msa1143930:three_prime_UTR 35.0%
! ACCATTCATTCTCTGTTTTG+AGG - chr7_4:19829720-19829739 Msa1143930:three_prime_UTR 35.0%
!! CCATTCATTCTCTGTTTTGA+GGG - chr7_4:19829721-19829740 Msa1143930:three_prime_UTR 35.0%
! AGTGATTTTGTGAATGTTGC+AGG - chr7_4:19829971-19829990 Msa1143930:three_prime_UTR 35.0%
! GTGATTTTGTGAATGTTGCA+GGG - chr7_4:19829972-19829991 Msa1143930:three_prime_UTR 35.0%
TAGATACAATCAGCTTCATC+AGG + chr7_4:19830040-19830059 None:intergenic 35.0%
! TATTTGAGGACAGGTTTTTG+CGG - chr7_4:19830061-19830080 Msa1143930:three_prime_UTR 35.0%
AATAAAAATTTACCGCGCCA+CGG + chr7_4:19830123-19830142 None:intergenic 35.0%
! GTTTTTGATGTGATTGTCTC+TGG - chr7_4:19830169-19830188 Msa1143930:three_prime_UTR 35.0%
CACTTAATTGTGTGTGATTG+AGG - chr7_4:19830298-19830317 Msa1143930:CDS 35.0%
TAGGGATTTGTGTTTGTGAT+TGG - chr7_4:19830350-19830369 Msa1143930:CDS 35.0%
CATAAACTGAATTAACCACC+TGG + chr7_4:19830440-19830459 None:intergenic 35.0%
GACGAATAACAGTGTCAATT+GGG + chr7_4:19830505-19830524 None:intergenic 35.0%
AGACGAATAACAGTGTCAAT+TGG + chr7_4:19830506-19830525 None:intergenic 35.0%
! ACTGTTATTCGTCTTTTGTG+TGG - chr7_4:19830512-19830531 Msa1143930:CDS 35.0%
TCCATAACAATTTAGCGACA+CGG + chr7_4:19830846-19830865 None:intergenic 35.0%
GCATAAACCACAAAATCTCA+TGG + chr7_4:19830914-19830933 None:intergenic 35.0%
! TTGTCCCGTTTTCACATAAT+AGG + chr7_4:19831021-19831040 None:intergenic 35.0%
! TGATAAATAGGTGAAGGTAC+CGG + chr7_4:19831143-19831162 None:intergenic 35.0%
GGCTGTACAGTTTGATAAAT+AGG + chr7_4:19831155-19831174 None:intergenic 35.0%
! ATATTGTTGTTGTGAAGGAC+CGG + chr7_4:19831183-19831202 None:intergenic 35.0%
! ACACCATATTGTTGTTGTGA+AGG + chr7_4:19831188-19831207 None:intergenic 35.0%
AGCAATCAAAACAAAAGTCC+GGG + chr7_4:19831326-19831345 None:intergenic 35.0%
TGTCAGCATTACATGAAAAC+AGG - chr7_4:19831650-19831669 Msa1143930:intron 35.0%
GTCAGCATTACATGAAAACA+GGG - chr7_4:19831651-19831670 Msa1143930:intron 35.0%
TCAGCATTACATGAAAACAG+GGG - chr7_4:19831652-19831671 Msa1143930:intron 35.0%
AAAACAGGGGACTGTAAATT+TGG - chr7_4:19831665-19831684 Msa1143930:intron 35.0%
! ATAGGACTAAGGTTCACTTT+TGG + chr7_4:19831731-19831750 None:intergenic 35.0%
AAAGTGAACCTTAGTCCTAT+TGG - chr7_4:19831731-19831750 Msa1143930:intron 35.0%
GTTGAGAGATAATCATTACC+GGG + chr7_4:19831769-19831788 None:intergenic 35.0%
!! ATCCACTTTGGTTCTTGAAT+TGG - chr7_4:19831793-19831812 Msa1143930:CDS 35.0%
AACCAATTCAAGAACCAAAG+TGG + chr7_4:19831798-19831817 None:intergenic 35.0%
AATATTCTCTGATTTCCCTC+TGG - chr7_4:19831834-19831853 Msa1143930:CDS 35.0%
!!! CCCTCTGGTACTATATTTTT+TGG - chr7_4:19831849-19831868 Msa1143930:CDS 35.0%
CATTGAAAACAATTCACAGC+TGG - chr7_4:19832024-19832043 Msa1143930:CDS 35.0%
!!! TGGAACCTTTTTTTGTCAGT+TGG - chr7_4:19832044-19832063 Msa1143930:CDS 35.0%
!!! TTTTTTTTTTTTTGGGGGGG+GGG + chr7_4:19832240-19832259 None:intergenic 35.0%
GAATGTGTTGAGTAGTATGT+TGG - chr7_4:19832296-19832315 Msa1143930:CDS 35.0%
TCAAGCTCAAGTAATTATGC+AGG + chr7_4:19832490-19832509 None:intergenic 35.0%
GATTAAACGATTGTGGAAGT+AGG - chr7_4:19832559-19832578 Msa1143930:intron 35.0%
ATACTTTGTCTTTGGACTTC+AGG - chr7_4:19832679-19832698 Msa1143930:CDS 35.0%
AAACTTACAAAATCCACGCT+GGG + chr7_4:19832873-19832892 None:intergenic 35.0%
!!! CTTTTAAGTTATCCCAGTTC+AGG - chr7_4:19833338-19833357 Msa1143930:intron 35.0%
! CCAAATGCAAAAAAGGGTTT+TGG + chr7_4:19833610-19833629 None:intergenic 35.0%
!!! CCAAAACCCTTTTTTGCATT+TGG - chr7_4:19833607-19833626 Msa1143930:intron 35.0%
ATTGTTCCCAAGATATCGAA+AGG - chr7_4:19833669-19833688 Msa1143930:CDS 35.0%
GGTAAACCTTTCGATATCTT+GGG + chr7_4:19833678-19833697 None:intergenic 35.0%
! TTTTACTTGTCACAACACCA+TGG + chr7_4:19833768-19833787 None:intergenic 35.0%
!! AGAAACTGGTTCGGATTTCT+GGG + chr7_4:19829664-19829683 None:intergenic 40.0%
ACTAGAGTGAGAAACTGGTT+CGG + chr7_4:19829673-19829692 None:intergenic 40.0%
CCCTCAAAACAGAGAATGAA+TGG + chr7_4:19829724-19829743 None:intergenic 40.0%
GACGAAACGAAGGGTAAAAA+TGG + chr7_4:19829769-19829788 None:intergenic 40.0%
CGTACCTTTGTTCCATTGTA+CGG + chr7_4:19829791-19829810 None:intergenic 40.0%
CGTACAATGGAACAAAGGTA+CGG - chr7_4:19829789-19829808 Msa1143930:three_prime_UTR 40.0%
TTTGTGAATGTTGCAGGGTA+TGG - chr7_4:19829977-19829996 Msa1143930:three_prime_UTR 40.0%
! GTTTTTGCGGTTATGGTTCT+AGG - chr7_4:19830074-19830093 Msa1143930:three_prime_UTR 40.0%
TGAATTAACCACCTGGCAAA+CGG + chr7_4:19830433-19830452 None:intergenic 40.0%
CCATAACAATTTAGCGACAC+GGG + chr7_4:19830845-19830864 None:intergenic 40.0%
AAAGTACAAACCACTCGCAA+CGG + chr7_4:19830872-19830891 None:intergenic 40.0%
AAAACGGGACAATGCAAGTT+TGG - chr7_4:19831029-19831048 Msa1143930:intron 40.0%
GGTCCTTCACAACAACAATA+TGG - chr7_4:19831182-19831201 Msa1143930:intron 40.0%
! AATATGGTGTACTTGTTGCG+AGG - chr7_4:19831198-19831217 Msa1143930:intron 40.0%
ACAAATGAGCCATGTAGAAG+AGG + chr7_4:19831227-19831246 None:intergenic 40.0%
ACATTACCATTGGCCCATAA+GGG + chr7_4:19831256-19831275 None:intergenic 40.0%
!!! AGCTTTTGAGTTCTAGATGC+AGG - chr7_4:19831373-19831392 Msa1143930:intron 40.0%
! GAGTACTAGAAGGAAGTACA+GGG + chr7_4:19831412-19831431 None:intergenic 40.0%
TTGGTAAGGTCCAGTATAGA+CGG + chr7_4:19831492-19831511 None:intergenic 40.0%
AGGAACACTCATTACCTGAA+AGG - chr7_4:19831612-19831631 Msa1143930:intron 40.0%
ATGTAGATATCATCATCCGC+CGG - chr7_4:19831694-19831713 Msa1143930:intron 40.0%
CTCTCAACTCATATCCACTT+TGG - chr7_4:19831781-19831800 Msa1143930:CDS 40.0%
GAAATTGAATCCTGCATACG+AGG + chr7_4:19831968-19831987 None:intergenic 40.0%
!! TAGTGAACTCTTTTCTGGGA+TGG - chr7_4:19832077-19832096 Msa1143930:CDS 40.0%
AGGAATATGCAAGAGTAGTG+AGG - chr7_4:19832185-19832204 Msa1143930:intron 40.0%
AGAGTAGTGAGGAGTTTGTA+TGG - chr7_4:19832196-19832215 Msa1143930:intron 40.0%
GAGTAGTGAGGAGTTTGTAT+GGG - chr7_4:19832197-19832216 Msa1143930:intron 40.0%
!!! TTTTTTTTTTTTGGGGGGGG+GGG + chr7_4:19832239-19832258 None:intergenic 40.0%
TGTGTTGAGTAGTATGTTGG+AGG - chr7_4:19832299-19832318 Msa1143930:CDS 40.0%
! ATTTGGGACAAGGTGCAATA+AGG + chr7_4:19832531-19832550 None:intergenic 40.0%
GGCCACGTCAAAATAATATG+TGG + chr7_4:19832614-19832633 None:intergenic 40.0%
CAAACTTACAAAATCCACGC+TGG + chr7_4:19832874-19832893 None:intergenic 40.0%
! CAGCGTGGATTTTGTAAGTT+TGG - chr7_4:19832872-19832891 Msa1143930:intron 40.0%
GTGCAAGTTTGATCATCCTA+CGG - chr7_4:19832901-19832920 Msa1143930:intron 40.0%
TGCAAGTTTGATCATCCTAC+GGG - chr7_4:19832902-19832921 Msa1143930:intron 40.0%
TGCAACTGGCATATCAGAAA+GGG + chr7_4:19832957-19832976 None:intergenic 40.0%
!! GCTCATTGATGATGACATTC+TGG + chr7_4:19833083-19833102 None:intergenic 40.0%
! CATTCACATTGCTTAGCTTG+AGG + chr7_4:19833239-19833258 None:intergenic 40.0%
CGATTGACTGTCTTTACTCA+TGG - chr7_4:19833295-19833314 Msa1143930:intron 40.0%
TTGACTGTCTTTACTCATGG+AGG - chr7_4:19833298-19833317 Msa1143930:intron 40.0%
TGACTGTCTTTACTCATGGA+GGG - chr7_4:19833299-19833318 Msa1143930:intron 40.0%
TTGATTGGTGCAATGACTGT+TGG + chr7_4:19833365-19833384 None:intergenic 40.0%
AAAGCAAGTTGCGACTGTAT+GGG + chr7_4:19833470-19833489 None:intergenic 40.0%
AAAAGCAAGTTGCGACTGTA+TGG + chr7_4:19833471-19833490 None:intergenic 40.0%
CTTGGGAACAATAGCAAACA+GGG + chr7_4:19833661-19833680 None:intergenic 40.0%
TCTTGGGAACAATAGCAAAC+AGG + chr7_4:19833662-19833681 None:intergenic 40.0%
CGGTAAACCTTTCGATATCT+TGG + chr7_4:19833679-19833698 None:intergenic 40.0%
TACCGTGAAGAGAAGTTATC+AGG - chr7_4:19833694-19833713 Msa1143930:CDS 40.0%
CTCCTGATAACTTCTCTTCA+CGG + chr7_4:19833699-19833718 None:intergenic 40.0%
GTTATCAGGAGACTACAATG+AGG - chr7_4:19833708-19833727 Msa1143930:CDS 40.0%
! TGTGAGATCAGGTGATTTTC+TGG - chr7_4:19833917-19833936 Msa1143930:five_prime_UTR 40.0%
AACAGAGCAGAGAGAAGAGA+AGG - chr7_4:19829610-19829629 Msa1143930:three_prime_UTR 45.0%
ACAGAGCAGAGAGAAGAGAA+GGG - chr7_4:19829611-19829630 Msa1143930:three_prime_UTR 45.0%
!! GAAACTGGTTCGGATTTCTG+GGG + chr7_4:19829663-19829682 None:intergenic 45.0%
!! GAGAAACTGGTTCGGATTTC+TGG + chr7_4:19829665-19829684 None:intergenic 45.0%
CATTGTACGGACGAAACGAA+GGG + chr7_4:19829778-19829797 None:intergenic 45.0%
TCGTCCGTACAATGGAACAA+AGG - chr7_4:19829784-19829803 Msa1143930:three_prime_UTR 45.0%
! AGGACAGGTTTTTGCGGTTA+TGG - chr7_4:19830067-19830086 Msa1143930:three_prime_UTR 45.0%
GTGTGATTGAGGATGTGCAT+TGG - chr7_4:19830309-19830328 Msa1143930:CDS 45.0%
TTGAGGATGTGCATTGGACA+TGG - chr7_4:19830315-19830334 Msa1143930:CDS 45.0%
! TTTAGGTTATTGGAGCTGCG+AGG - chr7_4:19830373-19830392 Msa1143930:CDS 45.0%
! AACTCGTTCTGGATATTCCC+CGG + chr7_4:19830403-19830422 None:intergenic 45.0%
GAATTAACCACCTGGCAAAC+GGG + chr7_4:19830432-19830451 None:intergenic 45.0%
CAGTTCCGTTCCAATTTGAG+TGG + chr7_4:19830599-19830618 None:intergenic 45.0%
! TCTAGGATGGTGATACTTGC+AGG + chr7_4:19830801-19830820 None:intergenic 45.0%
CAAGTATCACCATCCTAGAC+AGG - chr7_4:19830802-19830821 Msa1143930:intron 45.0%
! CCCGTGTCGCTAAATTGTTA+TGG - chr7_4:19830842-19830861 Msa1143930:intron 45.0%
TTATGGATATCCGTTGCGAG+TGG - chr7_4:19830859-19830878 Msa1143930:intron 45.0%
!! CTGGTGATGGTGCTATCATT+TGG + chr7_4:19831094-19831113 None:intergenic 45.0%
ATTGGCAGAGGTGAAACTTG+GGG + chr7_4:19831119-19831138 None:intergenic 45.0%
CATTGGCAGAGGTGAAACTT+GGG + chr7_4:19831120-19831139 None:intergenic 45.0%
AATGAGCCATGTAGAAGAGG+TGG + chr7_4:19831224-19831243 None:intergenic 45.0%
TCTACATGGCTCATTTGTCC+AGG - chr7_4:19831229-19831248 Msa1143930:intron 45.0%
CTACATGGCTCATTTGTCCA+GGG - chr7_4:19831230-19831249 Msa1143930:intron 45.0%
GACATTACCATTGGCCCATA+AGG + chr7_4:19831257-19831276 None:intergenic 45.0%
! GGAGTACTAGAAGGAAGTAC+AGG + chr7_4:19831413-19831432 None:intergenic 45.0%
! ACACTCAACGGAGTACTAGA+AGG + chr7_4:19831422-19831441 None:intergenic 45.0%
TCTAGTACTCCGTTGAGTGT+TGG - chr7_4:19831422-19831441 Msa1143930:intron 45.0%
! TTGGTTCGACGCAGCTTTAT+GGG - chr7_4:19831441-19831460 Msa1143930:intron 45.0%
! GTATAGACGGTTGTTGGTGA+AGG + chr7_4:19831479-19831498 None:intergenic 45.0%
TCACCAACAACCGTCTATAC+TGG - chr7_4:19831479-19831498 Msa1143930:intron 45.0%
TCCTTCAGGTAGTAGTCAGA+AGG - chr7_4:19831592-19831611 Msa1143930:intron 45.0%
TCCTTCTGACTACTACCTGA+AGG + chr7_4:19831596-19831615 None:intergenic 45.0%
AAGGAAGGCCAATAGGACTA+AGG + chr7_4:19831742-19831761 None:intergenic 45.0%
ATAATCATTACCGGGCGCAA+AGG + chr7_4:19831761-19831780 None:intergenic 45.0%
TAGCTAGCTAGCTAGCTGTA+AGG - chr7_4:19831894-19831913 Msa1143930:CDS 45.0%
CTAGGACTCAGTTGAATGAG+TGG - chr7_4:19832149-19832168 Msa1143930:intron 45.0%
TGAGTGGTGTGTGCTTTACT+AGG - chr7_4:19832165-19832184 Msa1143930:intron 45.0%
!! AGCAGATGGACTGTAACTCA+GGG + chr7_4:19832930-19832949 None:intergenic 45.0%
!! AAGCAGATGGACTGTAACTC+AGG + chr7_4:19832931-19832950 None:intergenic 45.0%
TCAGAAAGGGAAGAAGCAGA+TGG + chr7_4:19832944-19832963 None:intergenic 45.0%
GTGCAACTGGCATATCAGAA+AGG + chr7_4:19832958-19832977 None:intergenic 45.0%
ACTCGGATGATGAGGATGAT+GGG + chr7_4:19833015-19833034 None:intergenic 45.0%
AACTCGGATGATGAGGATGA+TGG + chr7_4:19833016-19833035 None:intergenic 45.0%
GATGACATTCTGGATGAAGC+AGG + chr7_4:19833073-19833092 None:intergenic 45.0%
!! AGCTGGCTTGACTTTGTCAA+CGG - chr7_4:19833117-19833136 Msa1143930:CDS 45.0%
GACTTTGTCAACGGTTGTAC+CGG - chr7_4:19833126-19833145 Msa1143930:intron 45.0%
TGGGCATCTGATTGAGAAAC+CGG + chr7_4:19833148-19833167 None:intergenic 45.0%
! GGAACTCTGAGAAGATGGTT+GGG + chr7_4:19833167-19833186 None:intergenic 45.0%
CAACCATCTTCTCAGAGTTC+CGG - chr7_4:19833166-19833185 Msa1143930:intron 45.0%
ACTGGGAGTTGCTAAAGAAC+CGG + chr7_4:19833188-19833207 None:intergenic 45.0%
! TTAGCTTGAGGTGTGAGAGA+CGG + chr7_4:19833227-19833246 None:intergenic 45.0%
ACTCATGGAGGGTCTCAAAT+AGG - chr7_4:19833310-19833329 Msa1143930:intron 45.0%
ATGACTGTTGGACCTGAACT+GGG + chr7_4:19833353-19833372 None:intergenic 45.0%
AATGACTGTTGGACCTGAAC+TGG + chr7_4:19833354-19833373 None:intergenic 45.0%
TCAAGCTTTCGTGTGAGATC+AGG - chr7_4:19833906-19833925 Msa1143930:five_prime_UTR 45.0%
CCATTGTACGGACGAAACGA+AGG + chr7_4:19829779-19829798 None:intergenic 50.0%
CCTTCGTTTCGTCCGTACAA+TGG - chr7_4:19829776-19829795 Msa1143930:three_prime_UTR 50.0%
! AGTACCTTCATCAGCACCGA+CGG + chr7_4:19829871-19829890 None:intergenic 50.0%
GTGAATGTTGCAGGGTATGG+TGG - chr7_4:19829980-19829999 Msa1143930:three_prime_UTR 50.0%
!! TGTTGCAGGGTATGGTGGAT+TGG - chr7_4:19829985-19830004 Msa1143930:three_prime_UTR 50.0%
!! TATGGTGGATTGGTTGGTGG+TGG - chr7_4:19829995-19830014 Msa1143930:three_prime_UTR 50.0%
TCAGCTTCATCAGGTCGTTG+TGG + chr7_4:19830031-19830050 None:intergenic 50.0%
!! GCGGTTATGGTTCTAGGTGT+CGG - chr7_4:19830080-19830099 Msa1143930:three_prime_UTR 50.0%
TTTAACCATCCACGTGACCG+TGG - chr7_4:19830103-19830122 Msa1143930:three_prime_UTR 50.0%
GGGGAATATCCAGAACGAGT+TGG - chr7_4:19830402-19830421 Msa1143930:CDS 50.0%
TCTTGCATGCATGTCAGTGC+AGG - chr7_4:19830648-19830667 Msa1143930:CDS 50.0%
TCATGCTGCAGTACTATGCG+AGG - chr7_4:19830750-19830769 Msa1143930:intron 50.0%
AGGACGGGATCGTGCAAATT+TGG - chr7_4:19830770-19830789 Msa1143930:intron 50.0%
GTATCACCATCCTAGACAGG+CGG - chr7_4:19830805-19830824 Msa1143930:intron 50.0%
ATTCCATCATCCACAGCCTG+CGG - chr7_4:19831064-19831083 Msa1143930:intron 50.0%
GAAACTTGGGGAACTGGTGA+TGG + chr7_4:19831107-19831126 None:intergenic 50.0%
AGAGGTGAAACTTGGGGAAC+TGG + chr7_4:19831113-19831132 None:intergenic 50.0%
! GCATTGGCAGAGGTGAAACT+TGG + chr7_4:19831121-19831140 None:intergenic 50.0%
AGTTTCACCTCTGCCAATGC+CGG - chr7_4:19831121-19831140 Msa1143930:intron 50.0%
!! ATAGGTGAAGGTACCGGCAT+TGG + chr7_4:19831137-19831156 None:intergenic 50.0%
TGTTGTTGTGAAGGACCGGA+CGG + chr7_4:19831179-19831198 None:intergenic 50.0%
TCATTTGTCCAGGGCCCTTA+TGG - chr7_4:19831239-19831258 Msa1143930:intron 50.0%
CATTTGTCCAGGGCCCTTAT+GGG - chr7_4:19831240-19831259 Msa1143930:intron 50.0%
! ATGGTGGGGGACATTACCAT+TGG + chr7_4:19831266-19831285 None:intergenic 50.0%
! AATGGTAATGTCCCCCACCA+TGG - chr7_4:19831265-19831284 Msa1143930:intron 50.0%
TGAAAAAGGGACCATGGTGG+GGG + chr7_4:19831279-19831298 None:intergenic 50.0%
CTGAAAAAGGGACCATGGTG+GGG + chr7_4:19831280-19831299 None:intergenic 50.0%
CCTGAAAAAGGGACCATGGT+GGG + chr7_4:19831281-19831300 None:intergenic 50.0%
AAGGGCTCCAGCCTGAAAAA+GGG + chr7_4:19831292-19831311 None:intergenic 50.0%
TAAGGGCTCCAGCCTGAAAA+AGG + chr7_4:19831293-19831312 None:intergenic 50.0%
AGCCCTTATCAGGTATGTCC+CGG - chr7_4:19831305-19831324 Msa1143930:intron 50.0%
GTCCGGGACATACCTGATAA+GGG + chr7_4:19831310-19831329 None:intergenic 50.0%
AGTCCGGGACATACCTGATA+AGG + chr7_4:19831311-19831330 None:intergenic 50.0%
TGCGTCGAACCAACACTCAA+CGG + chr7_4:19831434-19831453 None:intergenic 50.0%
!! GTTGGTTCGACGCAGCTTTA+TGG - chr7_4:19831440-19831459 Msa1143930:intron 50.0%
GGTCCAGTATAGACGGTTGT+TGG + chr7_4:19831485-19831504 None:intergenic 50.0%
ACTGGACCTTACCAATCCTC+TGG - chr7_4:19831497-19831516 Msa1143930:intron 50.0%
GATTGGTAAGGACCAGCTGA+GGG + chr7_4:19831524-19831543 None:intergenic 50.0%
AGATTGGTAAGGACCAGCTG+AGG + chr7_4:19831525-19831544 None:intergenic 50.0%
GCTGGTCCTTACCAATCTTC+TGG - chr7_4:19831527-19831546 Msa1143930:intron 50.0%
GAGGGACCAGAAGATTGGTA+AGG + chr7_4:19831536-19831555 None:intergenic 50.0%
GATTGGTAAGGACCAGCTGA+GGG + chr7_4:19831524-19831543 None:intergenic 50.0%
AGATTGGTAAGGACCAGCTG+AGG + chr7_4:19831525-19831544 None:intergenic 50.0%
GCTGGTCCTTACCAATCTTC+TGG - chr7_4:19831527-19831546 Msa1143930:intron 50.0%
GAGGGACCAGAAGATTGGTA+AGG + chr7_4:19831536-19831555 None:intergenic 50.0%
CAATCTTCTGGTCCCTCAAC+CGG - chr7_4:19831569-19831588 Msa1143930:intron 50.0%
CTGACTACTACCTGAAGGAC+CGG + chr7_4:19831591-19831610 None:intergenic 50.0%
TGCTGACATTCCTGCTGATC+AGG + chr7_4:19831638-19831657 None:intergenic 50.0%
ATATCATCATCCGCCGGACA+TGG - chr7_4:19831700-19831719 Msa1143930:intron 50.0%
TATCATCATCCGCCGGACAT+GGG - chr7_4:19831701-19831720 Msa1143930:intron 50.0%
!! ACTTTTGGTGCACCCATGTC+CGG + chr7_4:19831716-19831735 None:intergenic 50.0%
CACACGTCTGTCTGATCTCT+AGG - chr7_4:19832131-19832150 Msa1143930:intron 50.0%
CGCTGGGTATAATGAGTGCA+AGG + chr7_4:19832857-19832876 None:intergenic 50.0%
TGCACTCATTATACCCAGCG+TGG - chr7_4:19832857-19832876 Msa1143930:intron 50.0%
!! TGATGGGGCAAGAGTACCAA+TGG + chr7_4:19832999-19833018 None:intergenic 50.0%
CTCGGATGATGAGGATGATG+GGG + chr7_4:19833014-19833033 None:intergenic 50.0%
CATCCTCATCATCCGAGTTG+AGG - chr7_4:19833017-19833036 Msa1143930:intron 50.0%
TGCAAGTTCAGGCCTCAACT+CGG + chr7_4:19833032-19833051 None:intergenic 50.0%
TTGAGGCCTGAACTTGCATC+AGG - chr7_4:19833034-19833053 Msa1143930:intron 50.0%
CTGGATCCTGATGCAAGTTC+AGG + chr7_4:19833043-19833062 None:intergenic 50.0%
ACTTGCATCAGGATCCAGCA+AGG - chr7_4:19833045-19833064 Msa1143930:intron 50.0%
! CGGAACTCTGAGAAGATGGT+TGG + chr7_4:19833168-19833187 None:intergenic 50.0%
! GAACCGGAACTCTGAGAAGA+TGG + chr7_4:19833172-19833191 None:intergenic 50.0%
GTGGATGGGCATGTGCATAA+TGG + chr7_4:19833520-19833539 None:intergenic 50.0%
GAGACGACCCATCGTTAGCT+CGG + chr7_4:19829815-19829834 None:intergenic 55.0%
!! ACTTCCGTCGGTGCTGATGA+AGG - chr7_4:19829864-19829883 Msa1143930:three_prime_UTR 55.0%
!! GCAGGGTATGGTGGATTGGT+TGG - chr7_4:19829989-19830008 Msa1143930:three_prime_UTR 55.0%
!! GGGTATGGTGGATTGGTTGG+TGG - chr7_4:19829992-19830011 Msa1143930:three_prime_UTR 55.0%
ATTGGAGCTGCGAGGATTGC+CGG - chr7_4:19830381-19830400 Msa1143930:CDS 55.0%
GCTGCAGTACTATGCGAGGA+CGG - chr7_4:19830754-19830773 Msa1143930:intron 55.0%
CTGCAGTACTATGCGAGGAC+GGG - chr7_4:19830755-19830774 Msa1143930:intron 55.0%
TTCCATCATCCACAGCCTGC+GGG - chr7_4:19831065-19831084 Msa1143930:intron 55.0%
CAAACTGTACAGCCTCCGTC+CGG - chr7_4:19831161-19831180 Msa1143930:intron 55.0%
! CCCACCATGGTCCCTTTTTC+AGG - chr7_4:19831278-19831297 Msa1143930:intron 55.0%
GCCTGAAAAAGGGACCATGG+TGG + chr7_4:19831282-19831301 None:intergenic 55.0%
CCAGCCTGAAAAAGGGACCA+TGG + chr7_4:19831285-19831304 None:intergenic 55.0%
!!! CCATGGTCCCTTTTTCAGGC+TGG - chr7_4:19831282-19831301 Msa1143930:intron 55.0%
TTCAGGCTGGAGCCCTTATC+AGG - chr7_4:19831295-19831314 Msa1143930:intron 55.0%
! GAGGGACCAGAGGATTGGTA+AGG + chr7_4:19831506-19831525 None:intergenic 55.0%
CAGCTGAGGGACCAGAAGAT+TGG + chr7_4:19831541-19831560 None:intergenic 55.0%
CAATCTTCTGGTCCCTCAGC+TGG - chr7_4:19831539-19831558 Msa1143930:intron 55.0%
CGGTTGAGGGACCAGAAGAT+TGG + chr7_4:19831571-19831590 None:intergenic 55.0%
CTACCTGAAGGACCGGTTGA+GGG + chr7_4:19831584-19831603 None:intergenic 55.0%
ACTACCTGAAGGACCGGTTG+AGG + chr7_4:19831585-19831604 None:intergenic 55.0%
ACCTGAAAGGCCTGATCAGC+AGG - chr7_4:19831625-19831644 Msa1143930:intron 55.0%
TCCTGCTGATCAGGCCTTTC+AGG + chr7_4:19831629-19831648 None:intergenic 55.0%
!! TATTGGCCTTCCTTTGCGCC+CGG - chr7_4:19831748-19831767 Msa1143930:intron 55.0%
TCATTACCGGGCGCAAAGGA+AGG + chr7_4:19831757-19831776 None:intergenic 55.0%
!!! TTTTTTTTGGGGGGGGGGGA+GGG + chr7_4:19832235-19832254 None:intergenic 55.0%
!!! TTTTTTTTTGGGGGGGGGGG+AGG + chr7_4:19832236-19832255 None:intergenic 55.0%
CTGTAACTCAGGGATCCCGT+AGG + chr7_4:19832920-19832939 None:intergenic 55.0%
CCAGTTGCACCCTATCCTGT+GGG - chr7_4:19832968-19832987 Msa1143930:intron 55.0%
! ATGGCGGAACCCACAGGATA+GGG + chr7_4:19832980-19832999 None:intergenic 55.0%
! AATGGCGGAACCCACAGGAT+AGG + chr7_4:19832981-19833000 None:intergenic 55.0%
TATCCTGTGGGTTCCGCCAT+TGG - chr7_4:19832980-19832999 Msa1143930:intron 55.0%
!! TGGGGCAAGAGTACCAATGG+CGG + chr7_4:19832996-19833015 None:intergenic 55.0%
AGGCCTCAACTCGGATGATG+AGG + chr7_4:19833023-19833042 None:intergenic 55.0%
! AGCACATCGACTGCTTCAGC+TGG - chr7_4:19833100-19833119 Msa1143930:CDS 55.0%
!! GTGCTACTTGTGGTGGCACT+GGG + chr7_4:19833205-19833224 None:intergenic 55.0%
!! AGAGACGGTGCTACTTGTGG+TGG + chr7_4:19833212-19833231 None:intergenic 55.0%
!! GTGAGAGACGGTGCTACTTG+TGG + chr7_4:19833215-19833234 None:intergenic 55.0%
AGGTACGGCCGAGCTAACGA+TGG - chr7_4:19829804-19829823 Msa1143930:three_prime_UTR 60.0%
GGTACGGCCGAGCTAACGAT+GGG - chr7_4:19829805-19829824 Msa1143930:three_prime_UTR 60.0%
GTTGCACTCTGATCCGTCGC+CGG - chr7_4:19829836-19829855 Msa1143930:three_prime_UTR 60.0%
ACTCTGATCCGTCGCCGGAA+TGG - chr7_4:19829841-19829860 Msa1143930:three_prime_UTR 60.0%
ACGGAAGTCCATTCCGGCGA+CGG + chr7_4:19829852-19829871 None:intergenic 60.0%
! TCGCCGGAATGGACTTCCGT+CGG - chr7_4:19829852-19829871 Msa1143930:three_prime_UTR 60.0%
! GCACCGACGGAAGTCCATTC+CGG + chr7_4:19829858-19829877 None:intergenic 60.0%
TTGGAGCTGCGAGGATTGCC+GGG - chr7_4:19830382-19830401 Msa1143930:CDS 60.0%
! ACGGGCTGTCCAACTCGTTC+TGG + chr7_4:19830414-19830433 None:intergenic 60.0%
AGTTGGACAGCCCGTTTGCC+AGG - chr7_4:19830419-19830438 Msa1143930:CDS 60.0%
TTCCTGCCGCCTGTCTAGGA+TGG + chr7_4:19830814-19830833 None:intergenic 60.0%
GTAGTTCCTGCCGCCTGTCT+AGG + chr7_4:19830818-19830837 None:intergenic 60.0%
GCTATCATTTGGCCACCCGC+AGG + chr7_4:19831083-19831102 None:intergenic 60.0%
!! GAAGGTACCGGCATTGGCAG+AGG + chr7_4:19831131-19831150 None:intergenic 60.0%
TGTTGTGAAGGACCGGACGG+AGG + chr7_4:19831176-19831195 None:intergenic 60.0%
GCGAGGCCACCTCTTCTACA+TGG - chr7_4:19831215-19831234 Msa1143930:intron 60.0%
!! GGAAGTACAGGGCTTGCTGC+TGG + chr7_4:19831401-19831420 None:intergenic 60.0%
CAGCTGAGGGACCAGAGGAT+TGG + chr7_4:19831511-19831530 None:intergenic 60.0%
CAATCCTCTGGTCCCTCAGC+TGG - chr7_4:19831509-19831528 Msa1143930:intron 60.0%
! TTTGGTGCACCCATGTCCGG+CGG + chr7_4:19831713-19831732 None:intergenic 60.0%
GGGCGCAAAGGAAGGCCAAT+AGG + chr7_4:19831749-19831768 None:intergenic 60.0%
GCCAGTTGCACCCTATCCTG+TGG - chr7_4:19832967-19832986 Msa1143930:intron 60.0%
CCCACAGGATAGGGTGCAAC+TGG + chr7_4:19832971-19832990 None:intergenic 60.0%
! GTACCAATGGCGGAACCCAC+AGG + chr7_4:19832986-19833005 None:intergenic 60.0%
GGATGAAGCAGGCTCCTTGC+TGG + chr7_4:19833062-19833081 None:intergenic 60.0%
!! GGTGCTACTTGTGGTGGCAC+TGG + chr7_4:19833206-19833225 None:intergenic 60.0%
TTTACCGCGCCACGGTCACG+TGG + chr7_4:19830115-19830134 None:intergenic 65.0%
TGGAGCTGCGAGGATTGCCG+GGG - chr7_4:19830383-19830402 Msa1143930:CDS 65.0%
TGGACAGCCCGTTTGCCAGG+TGG - chr7_4:19830422-19830441 Msa1143930:CDS 65.0%
CACCATCCTAGACAGGCGGC+AGG - chr7_4:19830809-19830828 Msa1143930:intron 65.0%
CACCCGCAGGCTGTGGATGA+TGG + chr7_4:19831070-19831089 None:intergenic 65.0%
CATCATCCACAGCCTGCGGG+TGG - chr7_4:19831068-19831087 Msa1143930:intron 65.0%
ATTTGGCCACCCGCAGGCTG+TGG + chr7_4:19831077-19831096 None:intergenic 65.0%
CCATTGGCCCATAAGGGCCC+TGG + chr7_4:19831250-19831269 None:intergenic 65.0%
CCAGGGCCCTTATGGGCCAA+TGG - chr7_4:19831247-19831266 Msa1143930:intron 65.0%
AGGACCAGCTGAGGGACCAG+AGG + chr7_4:19831516-19831535 None:intergenic 65.0%
GGTCCCTCAACCGGTCCTTC+AGG - chr7_4:19831578-19831597 Msa1143930:intron 65.0%
CCATCCACGTGACCGTGGCG+CGG - chr7_4:19830108-19830127 Msa1143930:three_prime_UTR 70.0%
CCGCGCCACGGTCACGTGGA+TGG + chr7_4:19830111-19830130 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 19829546 19833976 19829546 ID=Msa1143930;Name=Msa1143930
chr7_4 mRNA 19829546 19833976 19829546 ID=Msa1143930-mRNA-1;Parent=Msa1143930;Name=Msa1143930-mRNA-1;_AED=0.05;_eAED=0.05;_QI=249|1|1|1|1|1|7|730|500
chr7_4 exon 19829546 19830677 19829546 ID=Msa1143930-mRNA-1:exon:4620;Parent=Msa1143930-mRNA-1
chr7_4 exon 19831753 19832127 19831753 ID=Msa1143930-mRNA-1:exon:4619;Parent=Msa1143930-mRNA-1
chr7_4 exon 19832206 19832520 19832206 ID=Msa1143930-mRNA-1:exon:4618;Parent=Msa1143930-mRNA-1
chr7_4 exon 19832642 19832761 19832642 ID=Msa1143930-mRNA-1:exon:4617;Parent=Msa1143930-mRNA-1
chr7_4 exon 19833082 19833144 19833082 ID=Msa1143930-mRNA-1:exon:4616;Parent=Msa1143930-mRNA-1
chr7_4 exon 19833393 19833529 19833393 ID=Msa1143930-mRNA-1:exon:4615;Parent=Msa1143930-mRNA-1
chr7_4 exon 19833637 19833976 19833637 ID=Msa1143930-mRNA-1:exon:4614;Parent=Msa1143930-mRNA-1
chr7_4 five_prime_UTR 19833728 19833976 19833728 ID=Msa1143930-mRNA-1:five_prime_utr;Parent=Msa1143930-mRNA-1
chr7_4 CDS 19833637 19833727 19833637 ID=Msa1143930-mRNA-1:cds;Parent=Msa1143930-mRNA-1
chr7_4 CDS 19833393 19833529 19833393 ID=Msa1143930-mRNA-1:cds;Parent=Msa1143930-mRNA-1
chr7_4 CDS 19833082 19833144 19833082 ID=Msa1143930-mRNA-1:cds;Parent=Msa1143930-mRNA-1
chr7_4 CDS 19832642 19832761 19832642 ID=Msa1143930-mRNA-1:cds;Parent=Msa1143930-mRNA-1
chr7_4 CDS 19832206 19832520 19832206 ID=Msa1143930-mRNA-1:cds;Parent=Msa1143930-mRNA-1
chr7_4 CDS 19831753 19832127 19831753 ID=Msa1143930-mRNA-1:cds;Parent=Msa1143930-mRNA-1
chr7_4 CDS 19830276 19830677 19830276 ID=Msa1143930-mRNA-1:cds;Parent=Msa1143930-mRNA-1
chr7_4 three_prime_UTR 19829546 19830275 19829546 ID=Msa1143930-mRNA-1:three_prime_utr;Parent=Msa1143930-mRNA-1
Gene Sequence

>Msa1143930

ATGGAACAAAGGTACGGCCGAGCTAACGATGGGTCGTCTCAGTTGCACTCTGATCCGTCGCCGGAATGGACTTCCGTCGGTGCTGATGAAGGGTATGGTGGATTGGTTGGTGGTGGTGAATCGTATCCACAACGACCTGATGAAGCTGATTGTATCTATTATTTGAGGACAGGTTTTTGCGGTTATGGTTCTAGGTGTCGGTTTAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTGCGAGGATTGCCGGGGAATATCCAGAACGAGTTGGACAGCCCGTTTGCCAGTACTATGCGAGGACGGGATCGTGCAAATTTGGCGCTTCCTGCAAGTATCACCATCCTAGACAGGCGGCAGGAACTACTGCTCCCGTGTCGCTAAATTGTTATGGATATCCGTTGCGAGTGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGTGCAACATGTAAATTCCATCATCCACAGCCTGCGGGTGGCCAAATGATAGCACCATCACCAGTTCCCCAAGTTTCACCTCTGCCAATGCCGGTACCTTCACCTATTTATCAAACTGTACAGCCTCCGTCCGGTCCTTCACAACAACAATATGGTGTACTTGTTGCGAGGCCACCTCTTCTACATGGCTCATTTGTCCAGGGCCCTTATGGGCCAATGGTAATGTCCCCCACCATGGTCCCTTTTTCAGGCTGGAGCCCTTATCAGGCTCCAGCAGCAAGCCCTGTACTTCCTTCTAGTACTCCGTTGAGTGTTGGTTCGACGCAGCTTTATGGGATAACTCAGCTACCTTCACCAACAACCGTCTATACTGGACCTTACCAATCCTCTGGTCCCTCAGCTGGTCCTTACCAATCTTCTGGTCCCTCAGCTGGTCCTTACCAATCTTCTGGTCCCTCAACCGGTCCTTCAGGTAGTAGTCAGAAGGAACACTCATTACCTGAAAGGCCTGATCAGCAGGAATGTCAGCATTACATGAAAACAGGGGACTGTAAATTTGGTTCTACATGTAGATATCATCATCCGCCGGACATGGGTGCACCAAAAGTGAACCTTAGTCCTATTGGCCTTCCTTTGCGCCCGGGAGCACAACCTTGCACTCATTATACCCAGCGTGGATTTTGTAAGTTTGGATCTGCGTGCAAGTTTGATCATCCTACGGGATCCCTGAGTTACAGTCCATCTGCTTCTTCCCTTTCTGATATGCCAGTTGCACCCTATCCTGTGGGTTCCGCCATTGGTACTCTTGCCCCATCATCCTCATCATCCGAGTTGAGGCCTGAACTTGCATCAGGATCCAGCAAGGAGCCTGCTTCATCCAGAATGTCATCATCAATGAGCACATCGACTGCTTCAGCTGGCTTGACTTTGTCAACGGTTGTACCGGTTTCTCAATCAGATGCCCAACCATCTTCTCAGAGTTCCGGTTCTTTAGCAACTCCCAGTGCCACCACAAGTAGCACCGTCTCTCACACCTCAAGCTAA
Protein sequence

>Msa1143930

MEQRYGRANDGSSQLHSDPSPEWTSVGADEGYGGLVGGGESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARIAGEYPERVGQPVCQYYARTGSCKFGASCKYHHPRQAAGTTAPVSLNCYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGGQMIAPSPVPQVSPLPMPVPSPIYQTVQPPSGPSQQQYGVLVARPPLLHGSFVQGPYGPMVMSPTMVPFSGWSPYQAPAASPVLPSSTPLSVGSTQLYGITQLPSPTTVYTGPYQSSGPSAGPYQSSGPSAGPYQSSGPSTGPSGSSQKEHSLPERPDQQECQHYMKTGDCKFGSTCRYHHPPDMGAPKVNLSPIGLPLRPGAQPCTHYTQRGFCKFGSACKFDHPTGSLSYSPSASSLSDMPVAPYPVGSAIGTLAPSSSSSELRPELASGSSKEPASSRMSSSMSTSTASAGLTLSTVVPVSQSDAQPSSQSSGSLATPSATTSSTVSHTSS*