AlfalfaGEDB | Msa0729100

M. sativa cultivar zhongmu-4 / Msa0729100

KEGG: K08360
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
PFAM: PF03188.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0729100	XP_003614405.1	96.429	140	5	0	2	141	4	143	8.92e-89	271

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0729100	sp\|Q9C540\|ACFR4_ARATH	59.859	142	46	1	1	142	1	131	6.00e-50	164

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0729100	G7JX23	96.429	140	5	0	2	141	4	143	4.26e-89	271

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0027820	Msa0729100	0.842003	3.371853e-58	-8.615850e-47
Msa0061340	Msa0729100	0.811820	5.783448e-51	-8.615850e-47
Msa0081520	Msa0729100	0.820417	6.936778e-53	-8.615850e-47
Msa0092790	Msa0729100	0.808511	2.988002e-50	-8.615850e-47
Msa0093850	Msa0729100	0.801891	7.268759e-49	-8.615850e-47
Msa0136650	Msa0729100	0.814862	1.240836e-51	-8.615850e-47
Msa0138360	Msa0729100	0.819082	1.400047e-52	-8.615850e-47
Msa0152400	Msa0729100	0.824005	1.020262e-53	-8.615850e-47
Msa0173890	Msa0729100	0.819940	8.921847e-53	-8.615850e-47
Msa0174450	Msa0729100	0.800661	1.298158e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0729100	MtrunA17_Chr5g0422371	96.429	140	5	0	2	141	4	143	8.20e-93	271
Msa0729100	MtrunA17_Chr1g0203371	40.714	140	75	4	1	138	1	134	8.37e-24	94.0
Msa0729100	MtrunA17_Chr6g0456901	39.706	136	77	3	1	135	1	132	3.19e-23	92.8
Msa0729100	MtrunA17_Chr1g0161921	38.168	131	74	3	14	142	15	140	3.67e-22	89.4
Msa0729100	MtrunA17_Chr8g0375991	36.434	129	75	3	14	140	9	132	2.76e-17	76.6
Msa0729100	MtrunA17_Chr1g0161941	31.538	130	84	4	14	142	9	134	1.42e-14	69.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0729100	AT1G26100.1	59.859	142	46	1	1	142	1	131	6.09e-51	164
Msa0729100	AT5G38630.1	44.275	131	64	5	9	136	9	133	1.09e-26	102
Msa0729100	AT4G25570.2	39.552	134	76	3	9	141	49	178	1.20e-24	97.8
Msa0729100	AT4G25570.1	39.552	134	76	3	9	141	8	137	2.01e-24	96.3
Msa0729100	AT1G14730.1	30.556	144	90	4	14	152	20	158	7.22e-13	65.1

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Find 92 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGCAAAGGGAGTAGTG+AGG	0.647530	5_1:-35570045	None:intergenic
AAATGCGATCAGTGAGGATA+AGG	0.461868	5_1:+35572310	Msa0729100:CDS
AAGAGCAAAGGGAGTAGTGA+GGG	0.491250	5_1:-35570044	None:intergenic
AAGGGGTGGCTTTAGCTTCT+GGG	0.303519	5_1:+35570525	Msa0729100:CDS
AATCCAATGACCATGAGCAC+AGG	0.602677	5_1:-35570286	None:intergenic
AATGGTATCATACTGACAGA+AGG	0.626636	5_1:-35569719	None:intergenic
ACAAAATTCCAAGTAAATGA+TGG	0.437217	5_1:+35570563	Msa0729100:CDS
ACATTTAGTTACAGTTGTTA+TGG	0.357021	5_1:+35570010	Msa0729100:exon
ACTCACCTGAGCTCCAAAGA+GGG	0.638153	5_1:-35570639	None:intergenic
ACTCTCGCAAGAAAGAGCAA+AGG	0.634673	5_1:-35570056	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCAGATCTTAGAATAGAAAA+TGG	-	chr5_1:35569740-35569759	None:intergenic	30.0%
TAAACAACGATTGTGTTGAA+GGG	+	chr5_1:35569766-35569785	Msa0729100:five_prime_UTR	30.0%
AGAAAAAGAAAGAGAGAAAG+AGG	-	chr5_1:35569873-35569892	None:intergenic	30.0%
AAAGGGAATGAAGAAAATAG+AGG	-	chr5_1:35570200-35570219	None:intergenic	30.0%
ATGACTTAAATTGGAGATAG+AGG	-	chr5_1:35571090-35571109	None:intergenic	30.0%
TCTATCTCCAATTTAAGTCA+TGG	+	chr5_1:35571003-35571022	Msa0729100:intron	30.0%
ATTTAAGTCATGGCAAAAGT+AGG	+	chr5_1:35571013-35571032	Msa0729100:intron	30.0%
ATTTAAGTCATGGCAAAAGT+AGG	-	chr5_1:35571013-35571032	None:intergenic	30.0%
TCTATCTCCAATTTAAGTCA+TGG	-	chr5_1:35571003-35571022	None:intergenic	30.0%
ATGACTTAAATTGGAGATAG+AGG	+	chr5_1:35571090-35571109	Msa0729100:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	35569563	35572713	35569563	ID=Msa0729100;Name=Msa0729100
chr5_1	mRNA	35569563	35572713	35569563	ID=Msa0729100-mRNA-1;Parent=Msa0729100;Name=Msa0729100-mRNA-1;_AED=0.24;_eAED=0.24;_QI=466\|1\|1\|1\|1\|1\|4\|253\|194
chr5_1	exon	35569563	35570184	35569563	ID=Msa0729100-mRNA-1:exon:10991;Parent=Msa0729100-mRNA-1
chr5_1	exon	35570277	35570328	35570277	ID=Msa0729100-mRNA-1:exon:10992;Parent=Msa0729100-mRNA-1
chr5_1	exon	35570459	35570655	35570459	ID=Msa0729100-mRNA-1:exon:10993;Parent=Msa0729100-mRNA-1
chr5_1	exon	35572281	35572713	35572281	ID=Msa0729100-mRNA-1:exon:10994;Parent=Msa0729100-mRNA-1
chr5_1	five_prime_UTR	35569563	35570028	35569563	ID=Msa0729100-mRNA-1:five_prime_utr;Parent=Msa0729100-mRNA-1
chr5_1	CDS	35570029	35570184	35570029	ID=Msa0729100-mRNA-1:cds;Parent=Msa0729100-mRNA-1
chr5_1	CDS	35570277	35570328	35570277	ID=Msa0729100-mRNA-1:cds;Parent=Msa0729100-mRNA-1
chr5_1	CDS	35570459	35570655	35570459	ID=Msa0729100-mRNA-1:cds;Parent=Msa0729100-mRNA-1
chr5_1	CDS	35572281	35572460	35572281	ID=Msa0729100-mRNA-1:cds;Parent=Msa0729100-mRNA-1
chr5_1	three_prime_UTR	35572461	35572713	35572461	ID=Msa0729100-mRNA-1:three_prime_utr;Parent=Msa0729100-mRNA-1

Gene Sequence

>Msa0729100

ATGGCCACTGTCTTTCCCTCACTACTCCCTTTGCTCTTTCTTGCGAGAGTTTGTGGTCTTTCAGTAGCATTTCTTGTTCTCTTCTGGGCTCTGGCTTTCAAATCTAGCTTCCTCAATACTCCTAATTCTCTTCCTCAACAGGATCTCATCTATGCAGTTCTCCATCCTGTGCTCATGGTCATTGGATTTATCCTTTTAAGTGGAGAAGCAATTTTGGTGCATAGATGGTTGCCTGGGTCAAGGGGGTTGAAGAAATCGGTGCATTTATGTCTTCAAGGGGTGGCTTTAGCTTCTGGGATATTTGGGATTTGGACAAAATTCCAAGTAAATGATGGGATTGTGGCTAATTTCTACAGCCTTCATTCATGGATGGGTTTGATTTGTGTATCCCTCTTTGGAGCTCAGTGGCTTCTTGAACTTTTGGCACCGAGGAGAAATGCGATCAGTGAGGATAAGGATCTTACCTTGGCATGTATTTCTTGGCCTATACACTTATGCATTGGCAGTAGCAACGGCGGAAACTGGATTATTAGAGAAGCTGACATTCTTGCAAACACAGAGAAATGTATCCAAACACAGCACTGA

Protein sequence

>Msa0729100

MATVFPSLLPLLFLARVCGLSVAFLVLFWALAFKSSFLNTPNSLPQQDLIYAVLHPVLMVIGFILLSGEAILVHRWLPGSRGLKKSVHLCLQGVALASGIFGIWTKFQVNDGIVANFYSLHSWMGLICVSLFGAQWLLELLAPRRNAISEDKDLTLACISWPIHLCIGSSNGGNWIIREADILANTEKCIQTQH*