Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807280 | XP_003614405.1 | 96.429 | 140 | 5 | 0 | 2 | 141 | 4 | 143 | 8.92e-89 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807280 | sp|Q9C540|ACFR4_ARATH | 59.859 | 142 | 46 | 1 | 1 | 142 | 1 | 131 | 6.00e-50 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807280 | G7JX23 | 96.429 | 140 | 5 | 0 | 2 | 141 | 4 | 143 | 4.26e-89 | 271 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027820 | Msa0807280 | 0.849850 | 2.480711e-60 | -8.615850e-47 |
| Msa0032920 | Msa0807280 | -0.805466 | 1.316666e-49 | -8.615850e-47 |
| Msa0035120 | Msa0807280 | 0.810545 | 1.093129e-50 | -8.615850e-47 |
| Msa0061340 | Msa0807280 | 0.825443 | 4.674198e-54 | -8.615850e-47 |
| Msa0063890 | Msa0807280 | 0.810582 | 1.073245e-50 | -8.615850e-47 |
| Msa0081520 | Msa0807280 | 0.841561 | 4.409282e-58 | -8.615850e-47 |
| Msa0092790 | Msa0807280 | 0.811233 | 7.757548e-51 | -8.615850e-47 |
| Msa0093850 | Msa0807280 | 0.832271 | 1.039869e-55 | -8.615850e-47 |
| Msa0101440 | Msa0807280 | 0.809725 | 1.641692e-50 | -8.615850e-47 |
| Msa0614000 | Msa0807280 | 0.831652 | 1.478099e-55 | -8.615850e-47 |
| Msa0626450 | Msa0807280 | 0.857985 | 1.123440e-62 | -8.615850e-47 |
| Msa0626490 | Msa0807280 | 0.857305 | 1.786722e-62 | -8.615850e-47 |
| Msa0637560 | Msa0807280 | 0.801543 | 8.569787e-49 | -8.615850e-47 |
| Msa0637580 | Msa0807280 | 0.801969 | 7.006068e-49 | -8.615850e-47 |
| Msa0638480 | Msa0807280 | 0.839930 | 1.180389e-57 | -8.615850e-47 |
| Msa0663300 | Msa0807280 | 0.809431 | 1.899001e-50 | -8.615850e-47 |
| Msa0664060 | Msa0807280 | 0.800049 | 1.729449e-48 | -8.615850e-47 |
| Msa0664600 | Msa0807280 | 0.857369 | 1.710292e-62 | -8.615850e-47 |
| Msa0693330 | Msa0807280 | 0.816091 | 6.612584e-52 | -8.615850e-47 |
| Msa0710800 | Msa0807280 | 0.826183 | 3.120406e-54 | -8.615850e-47 |
| Msa0725000 | Msa0807280 | 0.856219 | 3.728785e-62 | -8.615850e-47 |
| Msa0729100 | Msa0807280 | 0.977891 | 1.072741e-144 | -8.615850e-47 |
| Msa0765270 | Msa0807280 | 0.856265 | 3.616397e-62 | -8.615850e-47 |
| Msa0766930 | Msa0807280 | 0.940669 | 1.570845e-100 | -8.615850e-47 |
| Msa0769180 | Msa0807280 | 0.802091 | 6.612767e-49 | -8.615850e-47 |
| Msa0788770 | Msa0807280 | 0.820554 | 6.451741e-53 | -8.615850e-47 |
| Msa0807260 | Msa0807280 | 0.827049 | 1.938424e-54 | -8.615850e-47 |
| Msa0807280 | Msa0807820 | 0.965382 | 1.565343e-124 | -8.615850e-47 |
| Msa0807280 | Msa0815630 | 0.811921 | 5.495449e-51 | -8.615850e-47 |
| Msa0807280 | Msa0845110 | 0.855906 | 4.606527e-62 | -8.615850e-47 |
| Msa0807280 | Msa0856050 | 0.815349 | 9.675096e-52 | -8.615850e-47 |
| Msa0807280 | Msa0861510 | 0.835518 | 1.601948e-56 | -8.615850e-47 |
| Msa0807280 | Msa0861530 | 0.819104 | 1.383786e-52 | -8.615850e-47 |
| Msa0807280 | Msa0861600 | 0.836107 | 1.135746e-56 | -8.615850e-47 |
| Msa0807280 | Msa0866250 | 0.827631 | 1.406443e-54 | -8.615850e-47 |
| Msa0807280 | Msa0866290 | 0.974593 | 1.975991e-138 | -8.615850e-47 |
| Msa0807280 | Msa0943440 | 0.825406 | 4.768769e-54 | -8.615850e-47 |
| Msa0807280 | Msa0945190 | 0.808951 | 2.406773e-50 | -8.615850e-47 |
| Msa0807280 | Msa0967870 | 0.819346 | 1.219125e-52 | -8.615850e-47 |
| Msa0807280 | Msa0980140 | 0.826240 | 3.023137e-54 | -8.615850e-47 |
| Msa0807280 | Msa1020670 | 0.815089 | 1.105333e-51 | -8.615850e-47 |
| Msa0807280 | Msa1031930 | 0.805349 | 1.393467e-49 | -8.615850e-47 |
| Msa0807280 | Msa1043370 | 0.806974 | 6.339666e-50 | -8.615850e-47 |
| Msa0807280 | Msa1047870 | 0.812095 | 5.036748e-51 | -8.615850e-47 |
| Msa0807280 | Msa1051830 | 0.818511 | 1.886868e-52 | -8.615850e-47 |
| Msa0807280 | Msa1079230 | 0.808193 | 3.492400e-50 | -8.615850e-47 |
| Msa0807280 | Msa1113340 | 0.823442 | 1.382181e-53 | -8.615850e-47 |
| Msa0807280 | Msa1123380 | 0.804017 | 2.643660e-49 | -8.615850e-47 |
| Msa0807280 | Msa1130890 | 0.832710 | 8.091541e-56 | -8.615850e-47 |
| Msa0807280 | Msa1130950 | 0.814852 | 1.247235e-51 | -8.615850e-47 |
| Msa0807280 | Msa1135270 | 0.818758 | 1.658809e-52 | -8.615850e-47 |
| Msa0807280 | Msa1174530 | 0.810753 | 9.855252e-51 | -8.615850e-47 |
| Msa0807280 | Msa1183120 | 0.804938 | 1.698396e-49 | -8.615850e-47 |
| Msa0807280 | Msa1213800 | 0.819108 | 1.380781e-52 | -8.615850e-47 |
| Msa0807280 | Msa1228200 | 0.804259 | 2.354140e-49 | -8.615850e-47 |
| Msa0807280 | Msa1229500 | 0.822576 | 2.199819e-53 | -8.615850e-47 |
| Msa0807280 | Msa1271990 | 0.825418 | 4.739367e-54 | -8.615850e-47 |
| Msa0807280 | Msa1276660 | 0.822907 | 1.842870e-53 | -8.615850e-47 |
| Msa0807280 | Msa1348090 | 0.824247 | 8.952254e-54 | -8.615850e-47 |
| Msa0807280 | Msa1356830 | 0.829188 | 5.919980e-55 | -8.615850e-47 |
| Msa0807280 | Msa1369150 | 0.814221 | 1.720158e-51 | -8.615850e-47 |
| Msa0807280 | Msa1371520 | 0.844273 | 8.370322e-59 | -8.615850e-47 |
| Msa0807280 | Msa1385890 | 0.815163 | 1.063992e-51 | -8.615850e-47 |
| Msa0807280 | Msa1386710 | 0.824310 | 8.652211e-54 | -8.615850e-47 |
| Msa0807280 | Msa1387870 | 0.807563 | 4.756109e-50 | -8.615850e-47 |
| Msa0807280 | Msa1404170 | 0.813459 | 2.532200e-51 | -8.615850e-47 |
| Msa0807280 | Msa1412000 | 0.806615 | 7.546356e-50 | -8.615850e-47 |
| Msa0807280 | Msa1419370 | 0.806182 | 9.312784e-50 | -8.615850e-47 |
| Msa0807280 | Msa1425880 | 0.814860 | 1.242432e-51 | -8.615850e-47 |
| Msa0807280 | Msa1432500 | 0.822540 | 2.242810e-53 | -8.615850e-47 |
| Msa0807280 | Msa1437940 | 0.840356 | 9.134654e-58 | -8.615850e-47 |
| Msa0807280 | Msa1440960 | 0.853274 | 2.663680e-61 | -8.615850e-47 |
| Msa0131900 | Msa0807280 | 0.800074 | 1.709385e-48 | -8.615850e-47 |
| Msa0136650 | Msa0807280 | 0.825180 | 5.394871e-54 | -8.615850e-47 |
| Msa0138360 | Msa0807280 | 0.842504 | 2.483799e-58 | -8.615850e-47 |
| Msa0144360 | Msa0807280 | 0.824582 | 7.466645e-54 | -8.615850e-47 |
| Msa0147980 | Msa0807280 | 0.810151 | 1.329399e-50 | -8.615850e-47 |
| Msa0152400 | Msa0807280 | 0.834422 | 3.025196e-56 | -8.615850e-47 |
| Msa0173890 | Msa0807280 | 0.845319 | 4.374524e-59 | -8.615850e-47 |
| Msa0174450 | Msa0807280 | 0.819737 | 9.927518e-53 | -8.615850e-47 |
| Msa0191700 | Msa0807280 | 0.800184 | 1.623307e-48 | -8.615850e-47 |
| Msa0214550 | Msa0807280 | 0.823509 | 1.333200e-53 | -8.615850e-47 |
| Msa0221000 | Msa0807280 | 0.814858 | 1.243674e-51 | -8.615850e-47 |
| Msa0225100 | Msa0807280 | 0.815644 | 8.318819e-52 | -8.615850e-47 |
| Msa0233730 | Msa0807280 | 0.823888 | 1.086888e-53 | -8.615850e-47 |
| Msa0365100 | Msa0807280 | 0.813097 | 3.041956e-51 | -8.615850e-47 |
| Msa0376630 | Msa0807280 | 0.811608 | 6.431555e-51 | -8.615850e-47 |
| Msa0378720 | Msa0807280 | 0.855688 | 5.332575e-62 | -8.615850e-47 |
| Msa0380620 | Msa0807280 | 0.807833 | 4.166078e-50 | -8.615850e-47 |
| Msa0410500 | Msa0807280 | 0.800363 | 1.492462e-48 | -8.615850e-47 |
| Msa0428370 | Msa0807280 | 0.811536 | 6.666548e-51 | -8.615850e-47 |
| Msa0430260 | Msa0807280 | 0.830680 | 2.562256e-55 | -8.615850e-47 |
| Msa0474730 | Msa0807280 | 0.846322 | 2.336416e-59 | -8.615850e-47 |
| Msa0479170 | Msa0807280 | 0.826916 | 2.086662e-54 | -8.615850e-47 |
| Msa0479200 | Msa0807280 | 0.834428 | 3.014203e-56 | -8.615850e-47 |
| Msa0253700 | Msa0807280 | 0.800205 | 1.607498e-48 | -8.615850e-47 |
| Msa0261170 | Msa0807280 | 0.800680 | 1.286690e-48 | -8.615850e-47 |
| Msa0266180 | Msa0807280 | 0.816093 | 6.605931e-52 | -8.615850e-47 |
| Msa0277450 | Msa0807280 | 0.817764 | 2.784908e-52 | -8.615850e-47 |
| Msa0287740 | Msa0807280 | 0.818045 | 2.405536e-52 | -8.615850e-47 |
| Msa0292400 | Msa0807280 | 0.810976 | 8.815847e-51 | -8.615850e-47 |
| Msa0296250 | Msa0807280 | 0.810546 | 1.092241e-50 | -8.615850e-47 |
| Msa0300270 | Msa0807280 | 0.822544 | 2.237831e-53 | -8.615850e-47 |
| Msa0300320 | Msa0807280 | 0.813941 | 1.983371e-51 | -8.615850e-47 |
| Msa0318700 | Msa0807280 | 0.803226 | 3.856401e-49 | -8.615850e-47 |
| Msa0320590 | Msa0807280 | 0.805671 | 1.192857e-49 | -8.615850e-47 |
| Msa0337700 | Msa0807280 | 0.818162 | 2.263167e-52 | -8.615850e-47 |
| Msa0341690 | Msa0807280 | 0.824953 | 6.102820e-54 | -8.615850e-47 |
| Msa0345330 | Msa0807280 | 0.806592 | 7.631118e-50 | -8.615850e-47 |
| Msa0500380 | Msa0807280 | 0.818661 | 1.744704e-52 | -8.615850e-47 |
| Msa0518030 | Msa0807280 | 0.810946 | 8.952873e-51 | -8.615850e-47 |
| Msa0527190 | Msa0807280 | 0.843134 | 1.689207e-58 | -8.615850e-47 |
| Msa0527860 | Msa0807280 | 0.813376 | 2.641353e-51 | -8.615850e-47 |
| Msa0545340 | Msa0807280 | 0.813963 | 1.961151e-51 | -8.615850e-47 |
| Msa0556010 | Msa0807280 | 0.800769 | 1.233752e-48 | -8.615850e-47 |
| Msa0573380 | Msa0807280 | 0.809058 | 2.283074e-50 | -8.615850e-47 |
| Msa0582450 | Msa0807280 | 0.801491 | 8.781376e-49 | -8.615850e-47 |
| Msa0586190 | Msa0807280 | 0.801360 | 9.343483e-49 | -8.615850e-47 |
| Msa0597790 | Msa0807280 | 0.809225 | 2.102347e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807280 | MtrunA17_Chr5g0422371 | 96.429 | 140 | 5 | 0 | 2 | 141 | 4 | 143 | 8.20e-93 | 271 |
| Msa0807280 | MtrunA17_Chr1g0203371 | 40.714 | 140 | 75 | 4 | 1 | 138 | 1 | 134 | 8.37e-24 | 94.0 |
| Msa0807280 | MtrunA17_Chr6g0456901 | 39.706 | 136 | 77 | 3 | 1 | 135 | 1 | 132 | 3.19e-23 | 92.8 |
| Msa0807280 | MtrunA17_Chr1g0161921 | 38.168 | 131 | 74 | 3 | 14 | 142 | 15 | 140 | 3.67e-22 | 89.4 |
| Msa0807280 | MtrunA17_Chr8g0375991 | 36.434 | 129 | 75 | 3 | 14 | 140 | 9 | 132 | 2.76e-17 | 76.6 |
| Msa0807280 | MtrunA17_Chr1g0161941 | 31.538 | 130 | 84 | 4 | 14 | 142 | 9 | 134 | 1.42e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0807280 | AT1G26100.1 | 59.859 | 142 | 46 | 1 | 1 | 142 | 1 | 131 | 6.09e-51 | 164 |
| Msa0807280 | AT5G38630.1 | 44.275 | 131 | 64 | 5 | 9 | 136 | 9 | 133 | 1.09e-26 | 102 |
| Msa0807280 | AT4G25570.2 | 39.552 | 134 | 76 | 3 | 9 | 141 | 49 | 178 | 1.20e-24 | 97.8 |
| Msa0807280 | AT4G25570.1 | 39.552 | 134 | 76 | 3 | 9 | 141 | 8 | 137 | 2.01e-24 | 96.3 |
| Msa0807280 | AT1G14730.1 | 30.556 | 144 | 90 | 4 | 14 | 152 | 20 | 158 | 7.22e-13 | 65.1 |
Find 92 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAGTGGCTTTGTTATTT+TGG | 0.056164 | 5_3:+28113480 | Msa0807280:three_prime_UTR |
| GCTTTAGCTTCTGGGATATT+TGG | 0.112597 | 5_3:+28111491 | Msa0807280:CDS |
| TAGCATTTCTTGTTCTCTTC+TGG | 0.118815 | 5_3:+28111051 | Msa0807280:CDS |
| CAAGGGGTGGCTTTAGCTTC+TGG | 0.175443 | 5_3:+28111482 | Msa0807280:CDS |
| GAATGTTTGTGCAGCAATTT+TGG | 0.224729 | 5_3:+28111403 | Msa0807280:intron |
| TTACCTTGGCATGTATTTCT+TGG | 0.229367 | 5_3:+28113316 | Msa0807280:CDS |
| TTTGCTTTGTTGTAATTCTA+TGG | 0.245295 | 5_3:+28110606 | Msa0807280:five_prime_UTR |
| TTGATTTGTGTATCCCTCTT+TGG | 0.260850 | 5_3:+28111584 | Msa0807280:CDS |
| CTTTAGCTTCTGGGATATTT+GGG | 0.267158 | 5_3:+28111492 | Msa0807280:CDS |
| CTTCTGGGATATTTGGGATT+TGG | 0.279862 | 5_3:+28111498 | Msa0807280:CDS |
| TGTTATGACGCCATCTTAAT+TGG | 0.285745 | 5_3:-28113654 | None:intergenic |
| TCCTGTTGAGGAAGAGAATT+AGG | 0.298620 | 5_3:-28111107 | None:intergenic |
| ATTTCTACAGCCTTCATTCA+TGG | 0.299138 | 5_3:+28111555 | Msa0807280:CDS |
| CTCTTTCTTGCGAGAGTTTG+TGG | 0.301862 | 5_3:+28111020 | Msa0807280:CDS |
| GCAGTGGCTTCTTGAACTTT+TGG | 0.301868 | 5_3:+28113257 | Msa0807280:intron |
| AAGGGGTGGCTTTAGCTTCT+GGG | 0.303519 | 5_3:+28111483 | Msa0807280:CDS |
| GTTGTAAATTCTTTAGGCCT+TGG | 0.309741 | 5_3:+28113448 | Msa0807280:three_prime_UTR |
| AGCATTTCTTGTTCTCTTCT+GGG | 0.319777 | 5_3:+28111052 | Msa0807280:CDS |
| TACTACCTTCTCCACTTAAA+AGG | 0.321243 | 5_3:-28111270 | None:intergenic |
| CCACAATCCCATCATTTACT+TGG | 0.326307 | 5_3:-28111529 | None:intergenic |
| TCCATGGTTGTAAATTCTTT+AGG | 0.339651 | 5_3:+28113442 | Msa0807280:three_prime_UTR |
| CATCCTGTGCTCATGGTCAT+TGG | 0.339718 | 5_3:+28111241 | Msa0807280:CDS |
| ACATTTAGTTACAGTTGTTA+TGG | 0.357021 | 5_3:+28110968 | Msa0807280:exon |
| TCTTGTTCTCTTCTGGGCTC+TGG | 0.357755 | 5_3:+28111058 | Msa0807280:CDS |
| GCAGATCTTAGAATAGAAAA+TGG | 0.360436 | 5_3:-28110695 | None:intergenic |
| GCAGTAGCAACGGCGGAAAC+TGG | 0.361598 | 5_3:+28113358 | Msa0807280:CDS |
| TTGTTAGAATTTAGATATCT+TGG | 0.364277 | 5_3:+28113624 | Msa0807280:three_prime_UTR |
| TCCTAATTCTCTTCCTCAAC+AGG | 0.404001 | 5_3:+28111106 | Msa0807280:CDS |
| TGTATCCCTCTTTGGAGCTC+AGG | 0.406685 | 5_3:+28111592 | Msa0807280:CDS |
| TAGATGGTTGCCTGGGTCAA+GGG | 0.416984 | 5_3:+28111430 | Msa0807280:CDS |
| CTGCCAATGCATAAGTGTAT+AGG | 0.426996 | 5_3:-28113339 | None:intergenic |
| ACAAAATTCCAAGTAAATGA+TGG | 0.437217 | 5_3:+28111521 | Msa0807280:CDS |
| TTCTATTCTAAGATCTGCAA+TGG | 0.437930 | 5_3:+28110700 | Msa0807280:five_prime_UTR |
| TACAGCCTTCATTCATGGAT+GGG | 0.445813 | 5_3:+28111560 | Msa0807280:CDS |
| CATGGACTCAGTGCTGTGTT+TGG | 0.448440 | 5_3:-28113425 | None:intergenic |
| ATAGATGGTTGCCTGGGTCA+AGG | 0.449560 | 5_3:+28111429 | Msa0807280:CDS |
| GCGGCGACAACGGTCAGATC+TGG | 0.449819 | 5_3:+28110789 | Msa0807280:five_prime_UTR |
| GAAGAGAATTAGGAGTATTG+AGG | 0.459271 | 5_3:-28111097 | None:intergenic |
| AAATGCGATCAGTGAGGATA+AGG | 0.461868 | 5_3:+28113290 | Msa0807280:CDS |
| TCGGTGCATTTATGTCTTCA+AGG | 0.466772 | 5_3:+28111464 | Msa0807280:CDS |
| TTGGTGCATAGATGGTTGCC+TGG | 0.471390 | 5_3:+28111422 | Msa0807280:CDS |
| GTAAACAACGATTGTGTTGA+AGG | 0.474451 | 5_3:+28110723 | Msa0807280:five_prime_UTR |
| GGTTCTCCATCCTGTGCTCA+TGG | 0.477323 | 5_3:+28111234 | Msa0807280:intron |
| CTACAGCCTTCATTCATGGA+TGG | 0.480089 | 5_3:+28111559 | Msa0807280:CDS |
| AGATGGTTGCCTGGGTCAAG+GGG | 0.483244 | 5_3:+28111431 | Msa0807280:CDS |
| AAGAGCAAAGGGAGTAGTGA+GGG | 0.491250 | 5_3:-28111002 | None:intergenic |
| CTCTCGCAAGAAAGAGCAAA+GGG | 0.500913 | 5_3:-28111013 | None:intergenic |
| CGGTGCATTTATGTCTTCAA+GGG | 0.507370 | 5_3:+28111465 | Msa0807280:CDS |
| GTCAATTTGGTCGCAAACAA+AGG | 0.515334 | 5_3:+28110640 | Msa0807280:five_prime_UTR |
| TCTATTCTAAGATCTGCAAT+GGG | 0.521294 | 5_3:+28110701 | Msa0807280:five_prime_UTR |
| CAAACACAGCACTGAGTCCA+TGG | 0.530906 | 5_3:+28113426 | Msa0807280:exon |
| CAAAATTCCAAGTAAATGAT+GGG | 0.535853 | 5_3:+28111522 | Msa0807280:CDS |
| CCAAGTAAATGATGGGATTG+TGG | 0.538655 | 5_3:+28111529 | Msa0807280:CDS |
| TCAAACCCATCCATGAATGA+AGG | 0.539092 | 5_3:-28111565 | None:intergenic |
| GGATCTAAGAGCCAGGTTGT+CGG | 0.540019 | 5_3:+28110876 | Msa0807280:five_prime_UTR |
| GTGTAATACTCCCTCCGTCC+CGG | 0.540277 | 5_3:-28110520 | None:intergenic |
| GTGGATGGCTGCCGACAACC+TGG | 0.544797 | 5_3:-28110887 | None:intergenic |
| GCATTTATGTCTTCAAGGGG+TGG | 0.549961 | 5_3:+28111469 | Msa0807280:CDS |
| TGGCCTATACACTTATGCAT+TGG | 0.552843 | 5_3:+28113336 | Msa0807280:CDS |
| GTCAGTTATTCCGGGACGGA+GGG | 0.558569 | 5_3:+28110510 | None:intergenic |
| TGGTCACAAGCCAATTAAGA+TGG | 0.558924 | 5_3:+28113644 | Msa0807280:three_prime_UTR |
| TCACTGATCGCATTTCTCCT+CGG | 0.562616 | 5_3:-28113282 | None:intergenic |
| CTTGGTCTTGCTCTCCTCAG+TGG | 0.566596 | 5_3:+28113466 | Msa0807280:three_prime_UTR |
| AGGCCAAGAAATACATGCCA+AGG | 0.572983 | 5_3:-28113319 | None:intergenic |
| TGGTGCATAGATGGTTGCCT+GGG | 0.586545 | 5_3:+28111423 | Msa0807280:CDS |
| TTATGCATTGGCAGTAGCAA+CGG | 0.591173 | 5_3:+28113348 | Msa0807280:CDS |
| GGTCAGTTATTCCGGGACGG+AGG | 0.593751 | 5_3:+28110509 | None:intergenic |
| GCCTAAAGAATTTACAACCA+TGG | 0.598613 | 5_3:-28113443 | None:intergenic |
| AATCCAATGACCATGAGCAC+AGG | 0.602677 | 5_3:-28111244 | None:intergenic |
| GTTGCTAAACGCGGCGACAA+CGG | 0.605493 | 5_3:+28110779 | Msa0807280:five_prime_UTR |
| CTCACTACTAAATACACTCG+TGG | 0.610031 | 5_3:-28110906 | None:intergenic |
| CAATGACCATGAGCACAGGA+TGG | 0.614301 | 5_3:-28111240 | None:intergenic |
| CTACTAAATACACTCGTGGA+TGG | 0.619730 | 5_3:-28110902 | None:intergenic |
| TGAGGATAAGGATCTTACCT+TGG | 0.620818 | 5_3:+28113302 | Msa0807280:CDS |
| GATGGTTGCCTGGGTCAAGG+GGG | 0.624454 | 5_3:+28111432 | Msa0807280:CDS |
| AATGGTATCATACTGACAGA+AGG | 0.626636 | 5_3:-28110677 | None:intergenic |
| ACTCTCGCAAGAAAGAGCAA+AGG | 0.634673 | 5_3:-28111014 | None:intergenic |
| GAAGCAGTGGTTGCTAAACG+CGG | 0.634869 | 5_3:+28110770 | Msa0807280:five_prime_UTR |
| ATGGGTCAGTTATTCCGGGA+CGG | 0.635699 | 5_3:+28110506 | None:intergenic |
| TACTCACCTGAGCTCCAAAG+AGG | 0.638028 | 5_3:-28111598 | None:intergenic |
| ACTCACCTGAGCTCCAAAGA+GGG | 0.638153 | 5_3:-28111597 | None:intergenic |
| TGCATTGGCAGTAGCAACGG+CGG | 0.640059 | 5_3:+28113351 | Msa0807280:CDS |
| CACTGAGGAGAGCAAGACCA+AGG | 0.641031 | 5_3:-28113465 | None:intergenic |
| GTGAGTGAGTGACTAGTGAG+AGG | 0.642048 | 5_3:+28110924 | Msa0807280:five_prime_UTR |
| CCAAAATAACAAAGCCACTG+AGG | 0.646081 | 5_3:-28113480 | None:intergenic |
| GGTGCATTTATGTCTTCAAG+GGG | 0.646132 | 5_3:+28111466 | Msa0807280:CDS |
| AAAGAGCAAAGGGAGTAGTG+AGG | 0.647530 | 5_3:-28111003 | None:intergenic |
| TAAACAACGATTGTGTTGAA+GGG | 0.648525 | 5_3:+28110724 | Msa0807280:five_prime_UTR |
| GCATAGATGAGATCCTGTTG+AGG | 0.669004 | 5_3:-28111119 | None:intergenic |
| GAGTAGTGAGGGAAAGACAG+TGG | 0.669481 | 5_3:-28110991 | None:intergenic |
| TAAATGTTGTGCAGAAGCAG+TGG | 0.679941 | 5_3:+28110757 | Msa0807280:five_prime_UTR |
| GAGGAGAAATGCGATCAGTG+AGG | 0.738861 | 5_3:+28113284 | Msa0807280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGATGTAATTAAATAAAAA+GGG | - | chr5_3:28111175-28111194 | None:intergenic | 10.0% |
| !! | TTTGATGTAATTAAATAAAA+AGG | - | chr5_3:28111176-28111195 | None:intergenic | 10.0% |
| !!! | TTTAATTTTAATTTAATTGC+AGG | + | chr5_3:28111213-28111232 | Msa0807280:intron | 10.0% |
| !!! | TTCTAAATTAATTTTTACTT+AGG | + | chr5_3:28111659-28111678 | Msa0807280:intron | 10.0% |
| !! | AATAATTTGATAAAAACTAA+AGG | + | chr5_3:28111832-28111851 | Msa0807280:intron | 10.0% |
| !! | AATAATTTGATAAAAACTAA+AGG | - | chr5_3:28111832-28111851 | None:intergenic | 10.0% |
| !! | GATAATAACAATTCATAATT+GGG | - | chr5_3:28112915-28112934 | None:intergenic | 15.0% |
| !! | TGATAATAACAATTCATAAT+TGG | - | chr5_3:28112916-28112935 | None:intergenic | 15.0% |
| !! | AACCCAAAAATATTATGTAT+TGG | + | chr5_3:28111306-28111325 | Msa0807280:intron | 20.0% |
| !! | ACCCAAAAATATTATGTATT+GGG | + | chr5_3:28111307-28111326 | Msa0807280:intron | 20.0% |
| !!! | TCCCAATACATAATATTTTT+GGG | - | chr5_3:28111311-28111330 | None:intergenic | 20.0% |
| !!! | ATCCCAATACATAATATTTT+TGG | - | chr5_3:28111312-28111331 | None:intergenic | 20.0% |
| !! | AAATATTATGTATTGGGATT+AGG | + | chr5_3:28111313-28111332 | Msa0807280:intron | 20.0% |
| !! | TAATGAAATCAAGTCATTAT+TGG | + | chr5_3:28111346-28111365 | Msa0807280:intron | 20.0% |
| !! | AATACATGTATGTTAATTGA+TGG | + | chr5_3:28111734-28111753 | Msa0807280:intron | 20.0% |
| !! | AGCAACTAAATTGAAATAAA+AGG | - | chr5_3:28112845-28112864 | None:intergenic | 20.0% |
| !! | ACACAATTAATTTCTATCAA+TGG | - | chr5_3:28112990-28113009 | None:intergenic | 20.0% |
| !!! | GCAAAATTCTTTTATGTATA+TGG | + | chr5_3:28113181-28113200 | Msa0807280:intron | 20.0% |
| !!! | TTTTGAAGAATTTGATACTA+AGG | - | chr5_3:28113517-28113536 | None:intergenic | 20.0% |
| !! | TTGTTAGAATTTAGATATCT+TGG | + | chr5_3:28113624-28113643 | Msa0807280:three_prime_UTR | 20.0% |
| ! | ACAACAAAGCAAAAAACTAA+AGG | - | chr5_3:28110599-28110618 | None:intergenic | 25.0% |
| !! | TTTGCTTTGTTGTAATTCTA+TGG | + | chr5_3:28110606-28110625 | Msa0807280:five_prime_UTR | 25.0% |
| ! | ACATTTAGTTACAGTTGTTA+TGG | + | chr5_3:28110968-28110987 | Msa0807280:exon | 25.0% |
| !! | ATTGGATTTATCCTTTTAAG+TGG | + | chr5_3:28111259-28111278 | Msa0807280:CDS | 25.0% |
| ! | ACAAAATTCCAAGTAAATGA+TGG | + | chr5_3:28111521-28111540 | Msa0807280:CDS | 25.0% |
| ! | CAAAATTCCAAGTAAATGAT+GGG | + | chr5_3:28111522-28111541 | Msa0807280:CDS | 25.0% |
| !!! | TTAATTGATGGTGATTTTGT+TGG | + | chr5_3:28111746-28111765 | Msa0807280:intron | 25.0% |
| !! | TTTTATGGTGAACTTTACAA+TGG | - | chr5_3:28111907-28111926 | None:intergenic | 25.0% |
| !!! | TGAGAGTGTATTGTTTTTTA+TGG | - | chr5_3:28112097-28112116 | None:intergenic | 25.0% |
| ! | AATGCATATATGTTAAGTGA+TGG | - | chr5_3:28112285-28112304 | None:intergenic | 25.0% |
| ! | TTAATTGATTGCGATATTGT+CGG | - | chr5_3:28112310-28112329 | None:intergenic | 25.0% |
| !! | TATGTTGATTGATTGTGATA+TGG | - | chr5_3:28112387-28112406 | None:intergenic | 25.0% |
| ! | TTGATTGATTGTGATATTGT+TGG | - | chr5_3:28112416-28112435 | None:intergenic | 25.0% |
| ! | TATTTCTCACAATTTAAGTG+AGG | + | chr5_3:28112483-28112502 | Msa0807280:intron | 25.0% |
| ! | ATTTCTCACAATTTAAGTGA+GGG | + | chr5_3:28112484-28112503 | Msa0807280:intron | 25.0% |
| ! | AACAATAAGAAACTGGAATT+TGG | - | chr5_3:28112820-28112839 | None:intergenic | 25.0% |
| ! | AAAGGATAACAATAAGAAAC+TGG | - | chr5_3:28112827-28112846 | None:intergenic | 25.0% |
| ! | GGCTTTTACTTATGTCAATT+TGG | + | chr5_3:28110627-28110646 | Msa0807280:five_prime_UTR | 30.0% |
| GCAGATCTTAGAATAGAAAA+TGG | - | chr5_3:28110698-28110717 | None:intergenic | 30.0% | |
| !! | TTCTATTCTAAGATCTGCAA+TGG | + | chr5_3:28110700-28110719 | Msa0807280:five_prime_UTR | 30.0% |
| !! | TCTATTCTAAGATCTGCAAT+GGG | + | chr5_3:28110701-28110720 | Msa0807280:five_prime_UTR | 30.0% |
| TAAACAACGATTGTGTTGAA+GGG | + | chr5_3:28110724-28110743 | Msa0807280:five_prime_UTR | 30.0% | |
| AGAAAAAGAAAGAGAGAAAG+AGG | - | chr5_3:28110831-28110850 | None:intergenic | 30.0% | |
| !!! | ATCCACTTTTTCTTCCATAA+CGG | - | chr5_3:28110860-28110879 | None:intergenic | 30.0% |
| AAAGGGAATGAAGAAAATAG+AGG | - | chr5_3:28111158-28111177 | None:intergenic | 30.0% | |
| !! | TTTATCCTTTTAAGTGGAGA+AGG | + | chr5_3:28111265-28111284 | Msa0807280:CDS | 30.0% |
| ATGACTTAAATTGGAGATAG+AGG | - | chr5_3:28112057-28112076 | None:intergenic | 30.0% | |
| TCTATCTCCAATTTAAGTCA+TGG | + | chr5_3:28111961-28111980 | Msa0807280:intron | 30.0% | |
| ! | ACTTTTGCCATGACTTAAAT+TGG | - | chr5_3:28112048-28112067 | None:intergenic | 30.0% |
| ATTTAAGTCATGGCAAAAGT+AGG | + | chr5_3:28111971-28111990 | Msa0807280:intron | 30.0% | |
| ATTTAAGTCATGGCAAAAGT+AGG | - | chr5_3:28111971-28111990 | None:intergenic | 30.0% | |
| ! | ACTTTTGCCATGACTTAAAT+TGG | + | chr5_3:28112048-28112067 | Msa0807280:intron | 30.0% |
| TCTATCTCCAATTTAAGTCA+TGG | - | chr5_3:28111961-28111980 | None:intergenic | 30.0% | |
| ATGACTTAAATTGGAGATAG+AGG | + | chr5_3:28112057-28112076 | Msa0807280:intron | 30.0% | |
| !! | TTAAGTGATGGAGATTTTGT+TGG | - | chr5_3:28112273-28112292 | None:intergenic | 30.0% |
| TTGATTGATTGCGATATTGT+CGG | - | chr5_3:28112346-28112365 | None:intergenic | 30.0% | |
| TTGATTGATTGTGATATGGT+TGG | - | chr5_3:28112383-28112402 | None:intergenic | 30.0% | |
| TTTCTCACAATTTAAGTGAG+GGG | + | chr5_3:28112485-28112504 | Msa0807280:intron | 30.0% | |
| TACTTACTGTATACATAGTG+TGG | - | chr5_3:28112519-28112538 | None:intergenic | 30.0% | |
| TCAGGACATACATGAATAAA+GGG | - | chr5_3:28112870-28112889 | None:intergenic | 30.0% | |
| ATCAGGACATACATGAATAA+AGG | - | chr5_3:28112871-28112890 | None:intergenic | 30.0% | |
| ! | TGAATTGTTATTATCACCAC+TGG | + | chr5_3:28112920-28112939 | Msa0807280:intron | 30.0% |
| TATATGCACAGCAATAACAA+GGG | - | chr5_3:28113022-28113041 | None:intergenic | 30.0% | |
| TTATATGCACAGCAATAACA+AGG | - | chr5_3:28113023-28113042 | None:intergenic | 30.0% | |
| TCCATGGTTGTAAATTCTTT+AGG | + | chr5_3:28113442-28113461 | Msa0807280:three_prime_UTR | 30.0% | |
| ! | AACTTTTGTACTCAGATACT+AGG | + | chr5_3:28113539-28113558 | Msa0807280:three_prime_UTR | 30.0% |
| AATGGTATCATACTGACAGA+AGG | - | chr5_3:28110680-28110699 | None:intergenic | 35.0% | |
| GTAAACAACGATTGTGTTGA+AGG | + | chr5_3:28110723-28110742 | Msa0807280:five_prime_UTR | 35.0% | |
| !! | CTTTTTCTGAAAACCCGTTA+TGG | + | chr5_3:28110843-28110862 | Msa0807280:five_prime_UTR | 35.0% |
| !!! | TCCACTTTTTCTTCCATAAC+GGG | - | chr5_3:28110859-28110878 | None:intergenic | 35.0% |
| TAGCATTTCTTGTTCTCTTC+TGG | + | chr5_3:28111051-28111070 | Msa0807280:CDS | 35.0% | |
| AGCATTTCTTGTTCTCTTCT+GGG | + | chr5_3:28111052-28111071 | Msa0807280:CDS | 35.0% | |
| !! | GAAGAGAATTAGGAGTATTG+AGG | - | chr5_3:28111100-28111119 | None:intergenic | 35.0% |
| TACTACCTTCTCCACTTAAA+AGG | - | chr5_3:28111273-28111292 | None:intergenic | 35.0% | |
| ! | GAATGTTTGTGCAGCAATTT+TGG | + | chr5_3:28111403-28111422 | Msa0807280:intron | 35.0% |
| !! | CTTTAGCTTCTGGGATATTT+GGG | + | chr5_3:28111492-28111511 | Msa0807280:CDS | 35.0% |
| ATTTCTACAGCCTTCATTCA+TGG | + | chr5_3:28111555-28111574 | Msa0807280:CDS | 35.0% | |
| !! | TTGATTTGTGTATCCCTCTT+TGG | + | chr5_3:28111584-28111603 | Msa0807280:CDS | 35.0% |
| TGGAGATAGAGGAAAAAAGA+AGG | - | chr5_3:28112068-28112087 | None:intergenic | 35.0% | |
| GCAAAAGTAGGAATTAGTGT+TGG | + | chr5_3:28111983-28112002 | Msa0807280:intron | 35.0% | |
| !! | AGTGTTGGTCTGAAGTAATA+CGG | - | chr5_3:28112021-28112040 | None:intergenic | 35.0% |
| TGGAGATAGAGGAAAAAAGA+AGG | + | chr5_3:28112068-28112087 | Msa0807280:intron | 35.0% | |
| !!! | GTATTTTGGTCAGTTTGACT+GGG | - | chr5_3:28112660-28112679 | None:intergenic | 35.0% |
| ! | TAACTAACGCATGGGTATTT+TGG | - | chr5_3:28112674-28112693 | None:intergenic | 35.0% |
| AATCGCTACGTGAATTCAAA+TGG | - | chr5_3:28112790-28112809 | None:intergenic | 35.0% | |
| CAGGACATACATGAATAAAG+GGG | - | chr5_3:28112869-28112888 | None:intergenic | 35.0% | |
| ATATGCACAGCAATAACAAG+GGG | - | chr5_3:28113021-28113040 | None:intergenic | 35.0% | |
| GGAAATTGTAAACTAGTGTG+AGG | + | chr5_3:28113063-28113082 | Msa0807280:intron | 35.0% | |
| CAACATGTTGAACTTCGTTA+TGG | - | chr5_3:28113233-28113252 | None:intergenic | 35.0% | |
| TTACCTTGGCATGTATTTCT+TGG | + | chr5_3:28113316-28113335 | Msa0807280:CDS | 35.0% | |
| GCCTAAAGAATTTACAACCA+TGG | - | chr5_3:28113446-28113465 | None:intergenic | 35.0% | |
| GTTGTAAATTCTTTAGGCCT+TGG | + | chr5_3:28113448-28113467 | Msa0807280:three_prime_UTR | 35.0% | |
| TGTTATGACGCCATCTTAAT+TGG | - | chr5_3:28113657-28113676 | None:intergenic | 35.0% | |
| GTCAATTTGGTCGCAAACAA+AGG | + | chr5_3:28110640-28110659 | Msa0807280:five_prime_UTR | 40.0% | |
| TAAATGTTGTGCAGAAGCAG+TGG | + | chr5_3:28110757-28110776 | Msa0807280:five_prime_UTR | 40.0% | |
| ACCCGTTATGGAAGAAAAAG+TGG | + | chr5_3:28110855-28110874 | Msa0807280:five_prime_UTR | 40.0% | |
| AAAAAGTGGATCTAAGAGCC+AGG | + | chr5_3:28110869-28110888 | Msa0807280:five_prime_UTR | 40.0% | |
| CTACTAAATACACTCGTGGA+TGG | - | chr5_3:28110905-28110924 | None:intergenic | 40.0% | |
| CTCACTACTAAATACACTCG+TGG | - | chr5_3:28110909-28110928 | None:intergenic | 40.0% | |
| TCCTAATTCTCTTCCTCAAC+AGG | + | chr5_3:28111106-28111125 | Msa0807280:CDS | 40.0% | |
| TCCTGTTGAGGAAGAGAATT+AGG | - | chr5_3:28111110-28111129 | None:intergenic | 40.0% | |
| !! | CAGCAATTTTGGTGCATAGA+TGG | + | chr5_3:28111414-28111433 | Msa0807280:intron | 40.0% |
| TCGGTGCATTTATGTCTTCA+AGG | + | chr5_3:28111464-28111483 | Msa0807280:CDS | 40.0% | |
| CGGTGCATTTATGTCTTCAA+GGG | + | chr5_3:28111465-28111484 | Msa0807280:CDS | 40.0% | |
| GGTGCATTTATGTCTTCAAG+GGG | + | chr5_3:28111466-28111485 | Msa0807280:CDS | 40.0% | |
| !! | GCTTTAGCTTCTGGGATATT+TGG | + | chr5_3:28111491-28111510 | Msa0807280:CDS | 40.0% |
| !! | CTTCTGGGATATTTGGGATT+TGG | + | chr5_3:28111498-28111517 | Msa0807280:CDS | 40.0% |
| CCACAATCCCATCATTTACT+TGG | - | chr5_3:28111532-28111551 | None:intergenic | 40.0% | |
| ! | CCAAGTAAATGATGGGATTG+TGG | + | chr5_3:28111529-28111548 | Msa0807280:CDS | 40.0% |
| TACAGCCTTCATTCATGGAT+GGG | + | chr5_3:28111560-28111579 | Msa0807280:CDS | 40.0% | |
| TCAAACCCATCCATGAATGA+AGG | - | chr5_3:28111568-28111587 | None:intergenic | 40.0% | |
| GCAAAAGTAGGAGTTAGTGT+TGG | - | chr5_3:28112036-28112055 | None:intergenic | 40.0% | |
| !!! | GGTATTTTGGTCAGTTTGAC+TGG | - | chr5_3:28112661-28112680 | None:intergenic | 40.0% |
| GCGTTAGTTAACTAACGCAT+GGG | - | chr5_3:28112682-28112701 | None:intergenic | 40.0% | |
| TTGCGTGAGTTAACTTACAC+TGG | + | chr5_3:28112733-28112752 | Msa0807280:intron | 40.0% | |
| ! | AAGTGAAAAGCGCAACAATC+AGG | - | chr5_3:28112888-28112907 | None:intergenic | 40.0% |
| TCAAAAAGTCAAGCCTTGCA+CGG | - | chr5_3:28112958-28112977 | None:intergenic | 40.0% | |
| ! | AACTGCTGTAGCTGTTCTTT+TGG | + | chr5_3:28113042-28113061 | Msa0807280:intron | 40.0% |
| TGCGTTAGTTAACTAACGCA+AGG | + | chr5_3:28113109-28113128 | Msa0807280:intron | 40.0% | |
| GCGTTAGTTAACTAACGCAA+GGG | + | chr5_3:28113110-28113129 | Msa0807280:intron | 40.0% | |
| !!! | AACTAACGCAAGGGCATTTT+TGG | + | chr5_3:28113119-28113138 | Msa0807280:intron | 40.0% |
| !!! | GCATTTTTGGCATGGCAAAA+AGG | + | chr5_3:28113132-28113151 | Msa0807280:intron | 40.0% |
| TTCAACATGTTGCATTGCAG+TGG | + | chr5_3:28113241-28113260 | Msa0807280:intron | 40.0% | |
| AAATGCGATCAGTGAGGATA+AGG | + | chr5_3:28113290-28113309 | Msa0807280:CDS | 40.0% | |
| TGAGGATAAGGATCTTACCT+TGG | + | chr5_3:28113302-28113321 | Msa0807280:CDS | 40.0% | |
| TGGCCTATACACTTATGCAT+TGG | + | chr5_3:28113336-28113355 | Msa0807280:CDS | 40.0% | |
| CTGCCAATGCATAAGTGTAT+AGG | - | chr5_3:28113342-28113361 | None:intergenic | 40.0% | |
| ! | TTATGCATTGGCAGTAGCAA+CGG | + | chr5_3:28113348-28113367 | Msa0807280:CDS | 40.0% |
| CCAAAATAACAAAGCCACTG+AGG | - | chr5_3:28113483-28113502 | None:intergenic | 40.0% | |
| !!! | CCTCAGTGGCTTTGTTATTT+TGG | + | chr5_3:28113480-28113499 | Msa0807280:three_prime_UTR | 40.0% |
| TGGTCACAAGCCAATTAAGA+TGG | + | chr5_3:28113644-28113663 | Msa0807280:three_prime_UTR | 40.0% | |
| AAGAGCAAAGGGAGTAGTGA+GGG | - | chr5_3:28111005-28111024 | None:intergenic | 45.0% | |
| AAAGAGCAAAGGGAGTAGTG+AGG | - | chr5_3:28111006-28111025 | None:intergenic | 45.0% | |
| CTCTCGCAAGAAAGAGCAAA+GGG | - | chr5_3:28111016-28111035 | None:intergenic | 45.0% | |
| ACTCTCGCAAGAAAGAGCAA+AGG | - | chr5_3:28111017-28111036 | None:intergenic | 45.0% | |
| CTCTTTCTTGCGAGAGTTTG+TGG | + | chr5_3:28111020-28111039 | Msa0807280:CDS | 45.0% | |
| GCATAGATGAGATCCTGTTG+AGG | - | chr5_3:28111122-28111141 | None:intergenic | 45.0% | |
| AATCCAATGACCATGAGCAC+AGG | - | chr5_3:28111247-28111266 | None:intergenic | 45.0% | |
| GTCAAGGGGGTTGAAGAAAT+CGG | + | chr5_3:28111445-28111464 | Msa0807280:CDS | 45.0% | |
| GCATTTATGTCTTCAAGGGG+TGG | + | chr5_3:28111469-28111488 | Msa0807280:CDS | 45.0% | |
| CTACAGCCTTCATTCATGGA+TGG | + | chr5_3:28111559-28111578 | Msa0807280:CDS | 45.0% | |
| TTTGGTCAGTTTGACTGGGT+GGG | - | chr5_3:28112656-28112675 | None:intergenic | 45.0% | |
| ! | TTTTGGTCAGTTTGACTGGG+TGG | - | chr5_3:28112657-28112676 | None:intergenic | 45.0% |
| GGCGTTAGTTAACTAACGCA+TGG | - | chr5_3:28112683-28112702 | None:intergenic | 45.0% | |
| ACGGTATATTACGACACCAG+TGG | - | chr5_3:28112939-28112958 | None:intergenic | 45.0% | |
| GTGTCGTAATATACCGTGCA+AGG | + | chr5_3:28112942-28112961 | Msa0807280:intron | 45.0% | |
| ! | GCAGTGGCTTCTTGAACTTT+TGG | + | chr5_3:28113257-28113276 | Msa0807280:intron | 45.0% |
| ! | TTCTTGAACTTTTGGCACCG+AGG | + | chr5_3:28113265-28113284 | Msa0807280:CDS | 45.0% |
| TCACTGATCGCATTTCTCCT+CGG | - | chr5_3:28113285-28113304 | None:intergenic | 45.0% | |
| AGGCCAAGAAATACATGCCA+AGG | - | chr5_3:28113322-28113341 | None:intergenic | 45.0% | |
| GAAGCAGTGGTTGCTAAACG+CGG | + | chr5_3:28110770-28110789 | Msa0807280:five_prime_UTR | 50.0% | |
| GGATCTAAGAGCCAGGTTGT+CGG | + | chr5_3:28110876-28110895 | Msa0807280:five_prime_UTR | 50.0% | |
| GTGAGTGAGTGACTAGTGAG+AGG | + | chr5_3:28110924-28110943 | Msa0807280:five_prime_UTR | 50.0% | |
| GAGTAGTGAGGGAAAGACAG+TGG | - | chr5_3:28110994-28111013 | None:intergenic | 50.0% | |
| TCTTGTTCTCTTCTGGGCTC+TGG | + | chr5_3:28111058-28111077 | Msa0807280:CDS | 50.0% | |
| CAATGACCATGAGCACAGGA+TGG | - | chr5_3:28111243-28111262 | None:intergenic | 50.0% | |
| CATCCTGTGCTCATGGTCAT+TGG | + | chr5_3:28111241-28111260 | Msa0807280:CDS | 50.0% | |
| TTGGTGCATAGATGGTTGCC+TGG | + | chr5_3:28111422-28111441 | Msa0807280:CDS | 50.0% | |
| TGGTGCATAGATGGTTGCCT+GGG | + | chr5_3:28111423-28111442 | Msa0807280:CDS | 50.0% | |
| ATAGATGGTTGCCTGGGTCA+AGG | + | chr5_3:28111429-28111448 | Msa0807280:CDS | 50.0% | |
| TAGATGGTTGCCTGGGTCAA+GGG | + | chr5_3:28111430-28111449 | Msa0807280:CDS | 50.0% | |
| !! | AAGGGGTGGCTTTAGCTTCT+GGG | + | chr5_3:28111483-28111502 | Msa0807280:CDS | 50.0% |
| !! | TGTATCCCTCTTTGGAGCTC+AGG | + | chr5_3:28111592-28111611 | Msa0807280:CDS | 50.0% |
| ACTCACCTGAGCTCCAAAGA+GGG | - | chr5_3:28111600-28111619 | None:intergenic | 50.0% | |
| TACTCACCTGAGCTCCAAAG+AGG | - | chr5_3:28111601-28111620 | None:intergenic | 50.0% | |
| ! | CCAGCGTGAGTTAAGTTGCA+CGG | - | chr5_3:28112704-28112723 | None:intergenic | 50.0% |
| GCACAGCAATAACAAGGGGT+TGG | - | chr5_3:28113017-28113036 | None:intergenic | 50.0% | |
| !!! | ACGCAAGGGCATTTTTGGCA+TGG | + | chr5_3:28113124-28113143 | Msa0807280:intron | 50.0% |
| ! | AAGGCGCGAGTGAAAAGTGT+AGG | + | chr5_3:28113151-28113170 | Msa0807280:intron | 50.0% |
| ! | AGGCGCGAGTGAAAAGTGTA+GGG | + | chr5_3:28113152-28113171 | Msa0807280:intron | 50.0% |
| GAGGAGAAATGCGATCAGTG+AGG | + | chr5_3:28113284-28113303 | Msa0807280:CDS | 50.0% | |
| CATGGACTCAGTGCTGTGTT+TGG | - | chr5_3:28113428-28113447 | None:intergenic | 50.0% | |
| ! | CAAACACAGCACTGAGTCCA+TGG | + | chr5_3:28113426-28113445 | Msa0807280:exon | 50.0% |
| GTTGCTAAACGCGGCGACAA+CGG | + | chr5_3:28110779-28110798 | Msa0807280:five_prime_UTR | 55.0% | |
| GGTTCTCCATCCTGTGCTCA+TGG | + | chr5_3:28111234-28111253 | Msa0807280:intron | 55.0% | |
| AGATGGTTGCCTGGGTCAAG+GGG | + | chr5_3:28111431-28111450 | Msa0807280:CDS | 55.0% | |
| TTCTTCAACCCCCTTGACCC+AGG | - | chr5_3:28111443-28111462 | None:intergenic | 55.0% | |
| !! | CAAGGGGTGGCTTTAGCTTC+TGG | + | chr5_3:28111482-28111501 | Msa0807280:CDS | 55.0% |
| ! | TGGGAGCGAAAAGTGCAGAG+GGG | - | chr5_3:28112637-28112656 | None:intergenic | 55.0% |
| ! | GTGGGAGCGAAAAGTGCAGA+GGG | - | chr5_3:28112638-28112657 | None:intergenic | 55.0% |
| CCGTGCAACTTAACTCACGC+TGG | + | chr5_3:28112701-28112720 | Msa0807280:intron | 55.0% | |
| ! | GGCGCGAGTGAAAAGTGTAG+GGG | + | chr5_3:28113153-28113172 | Msa0807280:intron | 55.0% |
| ! | GCGCGAGTGAAAAGTGTAGG+GGG | + | chr5_3:28113154-28113173 | Msa0807280:intron | 55.0% |
| ! | TGCATTGGCAGTAGCAACGG+CGG | + | chr5_3:28113351-28113370 | Msa0807280:CDS | 55.0% |
| CACTGAGGAGAGCAAGACCA+AGG | - | chr5_3:28113468-28113487 | None:intergenic | 55.0% | |
| !! | CTTGGTCTTGCTCTCCTCAG+TGG | + | chr5_3:28113466-28113485 | Msa0807280:three_prime_UTR | 55.0% |
| GATGGTTGCCTGGGTCAAGG+GGG | + | chr5_3:28111432-28111451 | Msa0807280:CDS | 60.0% | |
| ! | GGTGGGAGCGAAAAGTGCAG+AGG | - | chr5_3:28112639-28112658 | None:intergenic | 60.0% |
| GCAGTAGCAACGGCGGAAAC+TGG | + | chr5_3:28113358-28113377 | Msa0807280:CDS | 60.0% | |
| GCGGCGACAACGGTCAGATC+TGG | + | chr5_3:28110789-28110808 | Msa0807280:five_prime_UTR | 65.0% | |
| GTGGATGGCTGCCGACAACC+TGG | - | chr5_3:28110890-28110909 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 28110521 | 28113693 | 28110521 | ID=Msa0807280;Name=Msa0807280 |
| chr5_3 | mRNA | 28110521 | 28113693 | 28110521 | ID=Msa0807280-mRNA-1;Parent=Msa0807280;Name=Msa0807280-mRNA-1;_AED=0.25;_eAED=0.25;_QI=466|1|1|1|1|1|4|253|194 |
| chr5_3 | exon | 28110521 | 28111142 | 28110521 | ID=Msa0807280-mRNA-1:exon:10043;Parent=Msa0807280-mRNA-1 |
| chr5_3 | exon | 28111235 | 28111286 | 28111235 | ID=Msa0807280-mRNA-1:exon:10044;Parent=Msa0807280-mRNA-1 |
| chr5_3 | exon | 28111417 | 28111613 | 28111417 | ID=Msa0807280-mRNA-1:exon:10045;Parent=Msa0807280-mRNA-1 |
| chr5_3 | exon | 28113261 | 28113693 | 28113261 | ID=Msa0807280-mRNA-1:exon:10046;Parent=Msa0807280-mRNA-1 |
| chr5_3 | five_prime_UTR | 28110521 | 28110986 | 28110521 | ID=Msa0807280-mRNA-1:five_prime_utr;Parent=Msa0807280-mRNA-1 |
| chr5_3 | CDS | 28110987 | 28111142 | 28110987 | ID=Msa0807280-mRNA-1:cds;Parent=Msa0807280-mRNA-1 |
| chr5_3 | CDS | 28111235 | 28111286 | 28111235 | ID=Msa0807280-mRNA-1:cds;Parent=Msa0807280-mRNA-1 |
| chr5_3 | CDS | 28111417 | 28111613 | 28111417 | ID=Msa0807280-mRNA-1:cds;Parent=Msa0807280-mRNA-1 |
| chr5_3 | CDS | 28113261 | 28113440 | 28113261 | ID=Msa0807280-mRNA-1:cds;Parent=Msa0807280-mRNA-1 |
| chr5_3 | three_prime_UTR | 28113441 | 28113693 | 28113441 | ID=Msa0807280-mRNA-1:three_prime_utr;Parent=Msa0807280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
