AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0195010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0195010 MtrunA17_Chr2g0286241 93.258 712 15 3 1 692 1 699 0.0 1353
Msa0195010 MtrunA17_Chr4g0066851 69.959 729 172 12 1 692 1 719 0.0 975
Msa0195010 MtrunA17_Chr1g0197401 35.962 317 200 1 72 385 11 327 6.10e-66 226
Msa0195010 MtrunA17_Chr7g0272641 35.873 315 199 1 71 385 169 480 1.29e-65 229
Msa0195010 MtrunA17_Chr1g0192821 32.090 268 165 8 76 338 15 270 3.97e-29 123
Msa0195010 MtrunA17_Chr1g0192821 27.206 272 187 6 68 337 57 319 1.92e-25 111
Msa0195010 MtrunA17_Chr1g0192821 32.692 156 94 4 232 384 11 158 8.00e-14 75.1
Msa0195010 MtrunA17_Chr4g0061581 31.120 241 148 6 73 304 62 293 9.94e-25 109
Msa0195010 MtrunA17_Chr4g0061581 32.143 168 103 4 189 346 16 182 1.35e-16 83.6
Msa0195010 MtrunA17_Chr4g0061581 28.279 244 158 7 82 317 18 252 1.77e-16 83.6
Msa0195010 MtrunA17_Chr4g0074871 31.193 218 130 7 92 300 281 487 1.30e-20 97.4
Msa0195010 MtrunA17_Chr4g0074871 27.660 235 158 6 86 319 333 556 3.53e-17 86.3
Msa0195010 MtrunA17_Chr4g0074871 27.891 147 105 1 195 341 333 478 2.10e-12 70.9
Msa0195010 MtrunA17_Chr1g0198221 27.431 288 177 10 82 346 13 291 1.85e-19 92.4
Msa0195010 MtrunA17_Chr1g0198221 27.972 286 173 8 86 352 74 345 6.40e-18 87.4
Msa0195010 MtrunA17_Chr1g0198221 31.429 210 123 6 75 271 113 314 6.16e-13 71.6
Msa0195010 MtrunA17_Chr1g0207821 29.231 260 145 11 86 317 66 314 6.59e-17 84.7
Msa0195010 MtrunA17_Chr2g0311721 28.814 177 107 5 150 316 24 191 1.18e-16 81.6
Msa0195010 MtrunA17_Chr2g0311721 25.610 246 168 7 75 317 7 240 9.51e-14 73.2
Msa0195010 MtrunA17_Chr1g0196221 23.875 289 184 8 133 386 7 294 6.40e-13 72.0
Msa0195010 MtrunA17_Chr1g0196221 28.155 206 130 8 73 270 83 278 7.02e-12 68.9
Msa0195010 MtrunA17_Chr4g0002171 27.660 235 140 9 62 271 206 435 1.14e-12 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0195010 AT5G18590.2 58.356 730 243 11 1 691 1 708 0.0 799
Msa0195010 AT5G18590.1 58.356 730 243 11 1 691 1 708 0.0 799
Msa0195010 AT3G05420.2 36.218 312 197 1 76 385 172 483 1.66e-68 237
Msa0195010 AT3G05420.1 36.218 312 197 1 76 385 171 482 2.70e-68 236
Msa0195010 AT5G27630.2 33.918 342 224 1 76 415 172 513 2.77e-66 229
Msa0195010 AT5G27630.1 35.897 312 198 1 76 385 172 483 5.78e-66 230
Msa0195010 AT5G27630.4 35.783 313 199 1 75 385 171 483 5.78e-66 230
Msa0195010 AT5G27630.3 35.897 312 198 1 76 385 172 483 7.39e-66 230
Msa0195010 AT5G04420.2 33.923 339 212 2 74 403 20 355 3.86e-60 211
Msa0195010 AT5G04420.1 33.923 339 212 2 74 403 20 355 3.86e-60 211
Msa0195010 AT5G04420.3 33.923 339 212 2 74 403 20 355 3.86e-60 211
Msa0195010 AT1G18610.1 31.933 238 144 6 76 304 65 293 1.06e-26 115
Msa0195010 AT1G18610.1 27.854 219 140 6 72 280 111 321 1.08e-17 87.4
Msa0195010 AT1G18610.1 27.451 255 165 10 145 386 76 323 1.41e-17 87.0
Msa0195010 AT1G18610.1 33.129 163 98 5 195 347 22 183 1.83e-15 80.5
Msa0195010 AT1G18610.1 31.875 160 99 4 149 300 27 184 2.16e-13 73.9
Msa0195010 AT1G18610.2 31.933 238 144 6 76 304 65 293 1.06e-26 115
Msa0195010 AT1G18610.2 27.854 219 140 6 72 280 111 321 1.08e-17 87.4
Msa0195010 AT1G18610.2 27.451 255 165 10 145 386 76 323 1.41e-17 87.0
Msa0195010 AT1G18610.2 33.129 163 98 5 195 347 22 183 1.83e-15 80.5
Msa0195010 AT1G18610.2 31.875 160 99 4 149 300 27 184 2.16e-13 73.9
Msa0195010 AT1G74150.2 26.804 291 194 6 76 356 62 343 2.11e-24 108
Msa0195010 AT1G74150.2 33.171 205 123 6 175 372 52 249 1.43e-17 87.0
Msa0195010 AT1G74150.2 25.738 237 153 6 73 299 109 332 2.48e-17 86.3
Msa0195010 AT1G74150.1 26.804 291 194 6 76 356 62 343 2.35e-24 108
Msa0195010 AT1G74150.1 33.171 205 123 6 175 372 52 249 1.48e-17 87.0
Msa0195010 AT1G74150.1 25.738 237 153 6 73 299 109 332 2.54e-17 86.3
Msa0195010 AT1G74150.4 26.804 291 194 6 76 356 46 327 2.43e-24 108
Msa0195010 AT1G74150.4 25.738 237 153 6 73 299 93 316 2.77e-17 86.3
Msa0195010 AT1G74150.4 32.673 202 122 6 178 372 39 233 3.26e-16 82.8
Msa0195010 AT1G74150.3 27.925 265 172 6 76 330 62 317 3.71e-24 107
Msa0195010 AT1G74150.3 33.171 205 123 6 175 372 52 249 1.70e-17 87.0
Msa0195010 AT1G74150.3 25.316 237 153 6 73 299 109 331 1.60e-16 84.0
Msa0195010 AT2G36360.3 25.613 367 230 13 81 422 12 360 1.88e-17 86.7
Msa0195010 AT2G36360.3 30.137 219 131 7 75 280 113 322 8.20e-14 75.1
Msa0195010 AT2G36360.2 26.644 289 178 10 81 345 12 290 2.30e-17 86.3
Msa0195010 AT2G36360.2 30.350 257 151 8 86 326 74 318 2.60e-17 85.9
Msa0195010 AT2G36360.2 30.137 219 131 7 75 280 113 322 8.77e-14 74.7
Msa0195010 AT2G36360.1 26.644 289 178 10 81 345 12 290 2.30e-17 86.3
Msa0195010 AT2G36360.1 30.350 257 151 8 86 326 74 318 2.60e-17 85.9
Msa0195010 AT2G36360.1 30.137 219 131 7 75 280 113 322 8.77e-14 74.7
Msa0195010 AT3G07720.1 28.571 196 123 5 150 337 26 212 2.55e-17 84.3
Msa0195010 AT3G07720.1 25.620 242 171 4 76 317 10 242 8.65e-14 73.6
Msa0195010 AT2G36360.4 26.644 289 178 10 81 345 12 290 3.03e-17 85.9
Msa0195010 AT2G36360.4 30.350 257 151 8 86 326 74 318 3.40e-17 85.9
Msa0195010 AT2G36360.4 30.137 219 131 7 75 280 113 322 1.13e-13 74.7
Msa0195010 AT4G04670.1 27.459 244 161 6 79 319 315 545 1.50e-16 84.7
Msa0195010 AT4G04670.1 29.714 175 114 3 133 300 304 476 2.15e-13 74.3
Msa0195010 AT4G04670.1 25.658 152 112 1 190 341 317 467 2.36e-11 67.8
Msa0195010 AT5G50310.1 28.782 271 155 11 86 329 66 325 1.04e-15 81.6
Msa0195010 AT2G36360.5 24.507 355 191 10 86 422 74 369 1.39e-15 80.5
Msa0195010 AT2G36360.5 30.857 175 98 6 192 345 14 186 1.80e-14 77.0
Msa0195010 AT2G36360.5 30.137 219 131 7 75 280 122 331 9.43e-14 74.7
Msa0195010 AT1G74150.6 28.814 177 120 3 185 356 2 177 3.25e-15 78.6
Msa0195010 AT1G74150.6 28.571 154 101 3 150 299 18 166 5.21e-12 68.9
Msa0195010 AT1G74150.5 28.814 177 120 3 185 356 2 177 3.25e-15 78.6
Msa0195010 AT1G74150.5 28.571 154 101 3 150 299 18 166 5.21e-12 68.9
Msa0195010 AT5G48180.1 26.210 248 161 7 76 317 8 239 1.08e-14 76.3
Msa0195010 AT5G48180.1 27.041 196 125 6 150 337 24 209 1.28e-11 67.0
Msa0195010 AT2G18915.1 30.627 271 150 13 72 317 320 577 1.09e-14 78.2
Msa0195010 AT2G18915.2 30.627 271 150 13 72 317 330 587 1.23e-14 77.8
Msa0195010 AT3G16410.1 27.273 242 166 5 127 362 242 479 4.85e-14 76.3
Msa0195010 AT3G16410.1 24.180 244 172 6 76 317 302 534 1.64e-12 71.2
Msa0195010 AT1G03445.1 27.749 191 111 6 145 309 30 219 1.40e-13 74.7
Msa0195010 AT1G03445.1 30.588 170 91 5 193 344 26 186 8.90e-12 68.9
Msa0195010 AT1G03445.2 27.749 191 111 6 145 309 30 219 1.89e-13 74.3
Msa0195010 AT1G03445.2 30.588 170 91 5 193 344 26 186 1.18e-11 68.6
Msa0195010 AT3G16400.2 29.050 179 125 2 185 362 153 330 1.30e-12 71.2
Msa0195010 AT3G16400.2 23.770 244 173 6 76 317 153 385 5.36e-12 69.3
Msa0195010 AT3G16400.1 29.050 179 125 2 185 362 153 330 1.30e-12 71.2
Msa0195010 AT3G16400.1 23.770 244 173 6 76 317 153 385 5.36e-12 69.3
Msa0195010 AT2G33070.1 26.141 241 170 4 127 362 94 331 2.88e-12 70.1
Msa0195010 AT2G33070.1 22.951 244 175 6 76 317 154 386 4.55e-11 66.2
Msa0195010 AT2G33070.2 26.141 241 170 4 127 362 94 331 2.88e-12 70.1
Msa0195010 AT2G33070.2 22.951 244 175 6 76 317 154 386 4.55e-11 66.2
Msa0195010 AT2G33070.3 28.249 177 125 2 187 362 158 333 1.38e-11 67.8
Msa0195010 AT1G51550.1 26.891 238 127 13 68 269 212 438 2.11e-11 67.4

Find 167 sgRNAs with CRISPR-Local

Find 431 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTTTGTGTCATCATTTC+TGG 0.119377 2_1:+11613428 None:intergenic
CTGTTCCTCCATATTGATTT+TGG 0.161780 2_1:+11614665 None:intergenic
TCCTCCCTGATAACAAAATT+TGG 0.178023 2_1:-11614492 Msa0195010:CDS
CTGTAATTGTAATTGAATTA+TGG 0.197803 2_1:-11613197 Msa0195010:three_prime_UTR
CTGATTCCATTGTTGGGACT+TGG 0.231152 2_1:-11620159 None:intergenic
AGGAATTTCTTGTTGCATTT+GGG 0.232869 2_1:-11616163 Msa0195010:CDS
TATTACTATTAGGACATATA+TGG 0.234014 2_1:-11613404 Msa0195010:three_prime_UTR
AACTCTACTTTAATATTGTT+TGG 0.235717 2_1:-11617552 Msa0195010:CDS
CATTAACACTGCATCTTTAG+AGG 0.255692 2_1:+11613343 None:intergenic
GATAACAAAATTTGGCATTC+TGG 0.261465 2_1:-11614484 Msa0195010:CDS
AAGGAATTTCTTGTTGCATT+TGG 0.266568 2_1:-11616164 Msa0195010:CDS
TAGAGTTTGCATTTCGTTTA+GGG 0.271535 2_1:+11619566 None:intergenic
GTAGAGTTTGCATTTCGTTT+AGG 0.274524 2_1:+11619565 None:intergenic
CAATATGGAGGAACAGGTTT+TGG 0.276025 2_1:-11614658 Msa0195010:CDS
GGTACTAGTCGGTTGTCTTC+TGG 0.281071 2_1:+11615988 None:intergenic
ACTCTACTTTAATATTGTTT+GGG 0.281962 2_1:-11617551 Msa0195010:CDS
TAATTTGACACCAGGTTTCT+TGG 0.311604 2_1:-11618159 Msa0195010:intron
TCAACACACTTCTCTCTATT+CGG 0.321522 2_1:-11620131 Msa0195010:five_prime_UTR
AATTTGACACCAGGTTTCTT+GGG 0.325115 2_1:-11618158 Msa0195010:intron
CCGAGAAAGTTGATGATGTT+TGG 0.337331 2_1:+11620059 None:intergenic
TCTCTGTTCGTACAAGATTC+TGG 0.339134 2_1:-11615821 Msa0195010:CDS
ACAAAGCTCATATTACTATT+AGG 0.343163 2_1:-11613414 Msa0195010:three_prime_UTR
AGAAGAAGAATAAAGATGTT+TGG 0.345399 2_1:-11619791 Msa0195010:exon
ATGCAGTGTTAATGCATTAC+TGG 0.349305 2_1:-11613334 Msa0195010:three_prime_UTR
TTTCGTTTAGGGTGCCTAAT+AGG 0.354777 2_1:+11619577 None:intergenic
ATAGTGGTTGGTGGTGAATC+TGG 0.354968 2_1:-11618893 Msa0195010:CDS
CAGGTCCAGTAGAAGAAAAT+TGG 0.371719 2_1:+11619408 None:intergenic
TGATAGGATTGACAGGCATT+TGG 0.374528 2_1:-11615735 Msa0195010:CDS
CCAAACATCATCAACTTTCT+CGG 0.374653 2_1:-11620059 Msa0195010:intron
TTGATGATGTTTGGTTAGTA+AGG 0.377798 2_1:+11620068 None:intergenic
AAATAAAATGTTCACCTTGT+TGG 0.379564 2_1:+11616584 None:intergenic
TCTAAAATCTCATTTCTGTA+TGG 0.380222 2_1:+11613272 None:intergenic
AGCTTGCAAGGGTCATAGTT+TGG 0.382174 2_1:-11618624 Msa0195010:intron
CCAGGAATCGACAAAATATC+TGG 0.383294 2_1:-11618100 Msa0195010:intron
CATGATCAAATTGACTGTTA+TGG 0.389822 2_1:+11615777 None:intergenic
CTCGTGTGCATCTGATATCC+AGG 0.391162 2_1:+11614693 None:intergenic
TTGCACATGAAAAGGTTTCC+TGG 0.391252 2_1:+11613495 None:intergenic
GGCACTAAGTGGTATATTAC+AGG 0.393302 2_1:-11616980 Msa0195010:CDS
CAAAATCAATATGGAGGAAC+AGG 0.395128 2_1:-11614664 Msa0195010:CDS
CGGAGTGGACAATGTTAGAT+AGG 0.395718 2_1:+11614289 None:intergenic
GCAGTGGCCATACAACTGTT+AGG 0.396047 2_1:-11617578 Msa0195010:CDS
ATCTGTAACGGCAGGCTACT+TGG 0.402706 2_1:+11618650 None:intergenic
AAGTATAGATCCTGGACCTT+TGG 0.407645 2_1:+11615967 None:intergenic
CATCAGGTAGTTCAGAGAAT+TGG 0.408902 2_1:-11619370 Msa0195010:CDS
TGGCATTCTGGAAGCACAAT+TGG 0.415991 2_1:-11614472 Msa0195010:CDS
AAGAATTCAATGTAGATGAT+AGG 0.423853 2_1:-11615751 Msa0195010:CDS
TGATTCCATTGTTGGGACTT+GGG 0.428287 2_1:-11620158 None:intergenic
ATGTTCAAGCCTTACATTGT+CGG 0.432027 2_1:+11614269 None:intergenic
TCATATTTGATCTGAACAAT+TGG 0.432756 2_1:+11613306 None:intergenic
TGGATGGTGTTGTCAATTGC+AGG 0.433137 2_1:-11619350 Msa0195010:CDS
AAGGAACTAGAAGTCCTATT+AGG 0.436143 2_1:-11619591 Msa0195010:CDS
ACACCTCATTGCACATGAAA+AGG 0.437302 2_1:+11613487 None:intergenic
GATGCCACGTGGTTGAATCT+TGG 0.440918 2_1:+11617248 None:intergenic
GAGAGGAGCCAAAATCAATA+TGG 0.441578 2_1:-11614673 Msa0195010:CDS
GAGATAAGTAACTGTGCATC+AGG 0.444693 2_1:-11619386 Msa0195010:CDS
CCTTGTGCTGCACAAGGACC+AGG 0.446536 2_1:+11616189 None:intergenic
GATGGCATGGTCAAGAATAA+AGG 0.449810 2_1:-11617053 Msa0195010:CDS
CCTGAAAACATAAATTCATC+AGG 0.456851 2_1:-11614564 Msa0195010:CDS
TTGGTTAGTAAGGAAGTTGT+TGG 0.462031 2_1:+11620078 None:intergenic
CAAACAGAGACTGCAATCAA+TGG 0.463940 2_1:-11613536 Msa0195010:CDS
TTGTCCACTCCGACAATGTA+AGG 0.465835 2_1:-11614278 Msa0195010:CDS
TAATTACATACATAGGATCT+AGG 0.468547 2_1:+11619314 None:intergenic
TTCTGAAAGGAAATCTTTGT+CGG 0.471559 2_1:-11615846 Msa0195010:CDS
ATATTACAGGCGGTGGAAGC+AGG 0.479398 2_1:-11616967 Msa0195010:CDS
GTTACAGATTCCAGCTTGCA+AGG 0.482796 2_1:-11618636 Msa0195010:CDS
AGTTTGCCCTAACAGTTGTA+TGG 0.485004 2_1:+11617571 None:intergenic
CCTTGTGCAGCACAAGGAAA+AGG 0.486212 2_1:-11616183 Msa0195010:CDS
GTGCAATGAGGTGTTCTTGA+TGG 0.487352 2_1:-11613478 Msa0195010:exon
TGCACATGAAAAGGTTTCCT+GGG 0.490413 2_1:+11613496 None:intergenic
CTGTTATGGAAGATGTTGGT+AGG 0.491069 2_1:+11615791 None:intergenic
ATTACTATTAGGACATATAT+GGG 0.496650 2_1:-11613403 Msa0195010:three_prime_UTR
TGGTTAGTAAGGAAGTTGTT+GGG 0.499953 2_1:+11620079 None:intergenic
GACAATGTTAGATAGGTTGT+TGG 0.501250 2_1:+11614296 None:intergenic
AACAGGGTCGATAAAACGTT+GGG 0.503162 2_1:+11615904 None:intergenic
AGTCGGTTGTCTTCTGGAAG+CGG 0.503270 2_1:+11615994 None:intergenic
TGAATTACTGAGAGAGAAGC+TGG 0.504426 2_1:-11614346 Msa0195010:CDS
AACACTTACGTGCAGTGAAG+TGG 0.505581 2_1:+11617459 None:intergenic
GACCGAGTGCTGGTCACTCA+TGG 0.511048 2_1:-11617970 Msa0195010:CDS
AACAATGGCTGACACGCTAC+AGG 0.516177 2_1:-11614373 Msa0195010:CDS
AAACTATGACCCTTGCAAGC+TGG 0.516811 2_1:+11618626 None:intergenic
AGATGAAAGTTCTTTCCCTC+AGG 0.517228 2_1:-11615711 Msa0195010:intron
TTACAATTACAGTTAATGAC+TGG 0.517332 2_1:+11613208 None:intergenic
TTCCATCCATCACCAAGAGC+TGG 0.517381 2_1:-11617022 Msa0195010:CDS
CTCTACTTTAATATTGTTTG+GGG 0.519015 2_1:-11617550 Msa0195010:CDS
GTATTCACTCGACTTTGAAA+CGG 0.519278 2_1:-11617159 Msa0195010:intron
GTTGGTGGTGAATCTGGAAA+TGG 0.520081 2_1:-11618887 Msa0195010:CDS
TGAGGGTGGCGATGAAGACT+TGG 0.522080 2_1:-11613370 Msa0195010:three_prime_UTR
CAGTGGCCATACAACTGTTA+GGG 0.523904 2_1:-11617577 Msa0195010:CDS
TCTCGTAAACACAAGAAACT+TGG 0.524489 2_1:-11619764 Msa0195010:CDS
GGAAGCAAAGGGAGACATAC+CGG 0.526021 2_1:-11617949 Msa0195010:intron
ATGTAGATGATAGGATTGAC+AGG 0.527338 2_1:-11615742 Msa0195010:CDS
ACACCACAGCAACCAGCTCT+TGG 0.531616 2_1:+11617010 None:intergenic
TTCCATGAGTGACCAGCACT+CGG 0.537533 2_1:+11617968 None:intergenic
GGAATTTCTTGTTGCATTTG+GGG 0.539505 2_1:-11616162 Msa0195010:CDS
ACATTTCAGATTCTTTGAAA+CGG 0.539772 2_1:-11613249 Msa0195010:three_prime_UTR
GATGCACAGTTACTTATCTC+AGG 0.542667 2_1:+11619389 None:intergenic
CTGGTCACTCATGGAAGCAA+AGG 0.547648 2_1:-11617961 Msa0195010:CDS
CAGCAACCAGCTCTTGGTGA+TGG 0.549757 2_1:+11617016 None:intergenic
TTTAGGATGATGGGGTTGAA+GGG 0.550340 2_1:-11619460 Msa0195010:intron
AACCAGCTCTTGGTGATGGA+TGG 0.554218 2_1:+11617020 None:intergenic
CACGTGGCATCTCTTTATGA+TGG 0.554865 2_1:-11617236 Msa0195010:CDS
AAGTGGTATATTACAGGCGG+TGG 0.557210 2_1:-11616974 Msa0195010:CDS
ATTTGACACCAGGTTTCTTG+GGG 0.558080 2_1:-11618157 Msa0195010:intron
GGGGAGAAGATTGCAAAAGG+AGG 0.563418 2_1:-11617530 Msa0195010:CDS
TTTCTTATATCCAGATGGCA+TGG 0.566220 2_1:-11617066 Msa0195010:intron
CAATTAAACGTGGTTCTGAA+AGG 0.566360 2_1:-11615859 Msa0195010:CDS
AGAGTCATTTCTAAGTTGAG+TGG 0.578930 2_1:+11615928 None:intergenic
CCGACTAGTACCAAAGGTCC+AGG 0.580716 2_1:-11615977 Msa0195010:CDS
TGGATTGTTAGACGATGTGC+AGG 0.584889 2_1:-11618867 Msa0195010:intron
CCTGGACCTTTGGTACTAGT+CGG 0.585499 2_1:+11615977 None:intergenic
CTCGTGGTAGAAAGTGATCA+CGG 0.585915 2_1:-11614594 Msa0195010:CDS
CCTGGTCCTTGTGCAGCACA+AGG 0.587673 2_1:-11616189 Msa0195010:CDS
AAAATCGAGCACCTACTCCC+AGG 0.588115 2_1:-11613513 Msa0195010:CDS
GTAAACACAAGAAACTTGGC+AGG 0.590232 2_1:-11619760 Msa0195010:intron
CATACATAGGATCTAGGAGT+AGG 0.590371 2_1:+11619320 None:intergenic
GATGGGGTTGAAGGGTCAAG+TGG 0.591764 2_1:-11619452 Msa0195010:CDS
TTGTTGGTAGTGATAGAAGA+AGG 0.594047 2_1:+11616600 None:intergenic
TGGTCACTCATGGAAGCAAA+GGG 0.594851 2_1:-11617960 Msa0195010:CDS
AAGCTGGAATCTGTAACGGC+AGG 0.596939 2_1:+11618642 None:intergenic
TCACCAAGAGCTGGTTGCTG+TGG 0.597396 2_1:-11617013 Msa0195010:CDS
TTGATCTCAAGTCCTTGACA+TGG 0.599083 2_1:-11617485 Msa0195010:CDS
AGGACTTCTAGTTCCTTGTG+TGG 0.600271 2_1:+11619597 None:intergenic
CAACAGGGTCGATAAAACGT+TGG 0.602316 2_1:+11615903 None:intergenic
CAACTTTCTGATACCACACA+AGG 0.603801 2_1:-11619610 Msa0195010:CDS
CATCTTATTCTCAATGACAC+AGG 0.607094 2_1:+11618916 None:intergenic
TTACAGATTCCAGCTTGCAA+GGG 0.607096 2_1:-11618635 Msa0195010:CDS
GTGAAGTGGAAGCCATGTCA+AGG 0.607359 2_1:+11617473 None:intergenic
TGCAGAGTTAGCTCAAGAAG+AGG 0.607697 2_1:-11614319 Msa0195010:CDS
TTGCAAGCTGGAATCTGTAA+CGG 0.609492 2_1:+11618638 None:intergenic
TTGACTGTTATGGAAGATGT+TGG 0.616809 2_1:+11615787 None:intergenic
CATTGAGAATAAGATGATAG+TGG 0.617742 2_1:-11618909 Msa0195010:CDS
TTGACACAGAGACCGAGTGC+TGG 0.619406 2_1:-11617980 Msa0195010:CDS
TGAAAAGGTTTCCTGGGAGT+AGG 0.622222 2_1:+11613502 None:intergenic
TCGTGTGCATCTGATATCCA+GGG 0.622732 2_1:+11614694 None:intergenic
GAATTTCTTGTTGCATTTGG+GGG 0.629851 2_1:-11616161 Msa0195010:CDS
AGAACATATCAAAATGACCC+TGG 0.631787 2_1:-11614711 Msa0195010:CDS
GAGAATAAGATGATAGTGGT+TGG 0.633657 2_1:-11618905 Msa0195010:CDS
TGTTATGGAAGATGTTGGTA+GGG 0.635463 2_1:+11615792 None:intergenic
TCTTGGCAGATTGCTCGCAG+TGG 0.636047 2_1:-11617594 Msa0195010:intron
AATAAGATGATAGTGGTTGG+TGG 0.636096 2_1:-11618902 Msa0195010:CDS
AGGGTCAAGTGGTCATTCTG+AGG 0.636554 2_1:-11619441 Msa0195010:CDS
CTAGCATCTGCAATTAAACG+TGG 0.637684 2_1:-11615869 Msa0195010:CDS
TCGTGGTAGAAAGTGATCAC+GGG 0.638127 2_1:-11614593 Msa0195010:CDS
GGATGGTGTTGTCAATTGCA+GGG 0.638261 2_1:-11619349 Msa0195010:CDS
ACAAGAAATGGATAAAACAA+TGG 0.639188 2_1:-11614388 Msa0195010:CDS
AAAAGGCACTCCTCATTGGA+GGG 0.642366 2_1:-11618132 Msa0195010:CDS
ATTGGAGGGAAAACAGACCC+AGG 0.645160 2_1:-11618118 Msa0195010:CDS
CGTGATCACTTTCTACCACG+AGG 0.645412 2_1:+11614595 None:intergenic
TCTACTTTAATATTGTTTGG+GGG 0.647851 2_1:-11617549 Msa0195010:CDS
AGGAGCCAAAATCAATATGG+AGG 0.652394 2_1:-11614670 Msa0195010:CDS
TTTGACACCAGGTTTCTTGG+GGG 0.653476 2_1:-11618156 Msa0195010:intron
ACGTGGTTGAATCTTGGAGA+AGG 0.655883 2_1:+11617254 None:intergenic
TTCTTCTATCACTACCAACA+AGG 0.656018 2_1:-11616598 Msa0195010:intron
AGGTAGTTCAGAGAATTGGA+TGG 0.659831 2_1:-11619366 Msa0195010:CDS
GGATATCAGATGCACACGAG+AGG 0.670333 2_1:-11614690 Msa0195010:CDS
AGACAACCGACTAGTACCAA+AGG 0.673944 2_1:-11615983 Msa0195010:CDS
CAAGCCTTACATTGTCGGAG+TGG 0.682789 2_1:+11614274 None:intergenic
TGGTCAAGAATAAAGGTGCG+TGG 0.685381 2_1:-11617046 Msa0195010:CDS
TTACTGAGAGAGAAGCTGGT+CGG 0.685529 2_1:-11614342 Msa0195010:CDS
TGTAAGGCTTGAACATGATG+TGG 0.686712 2_1:-11614262 Msa0195010:CDS
GATGGTGTTGTCAATTGCAG+GGG 0.689441 2_1:-11619348 Msa0195010:CDS
TTGGTAGTGATAGAAGAAGG+AGG 0.691034 2_1:+11616603 None:intergenic
ACTAAGTGGTATATTACAGG+CGG 0.714772 2_1:-11616977 Msa0195010:CDS
CATCATAAAGAGATGCCACG+TGG 0.722412 2_1:+11617237 None:intergenic
TTCTCCAAGATTCAACCACG+TGG 0.739104 2_1:-11617252 Msa0195010:CDS
GTAGTGATAGAAGAAGGAGG+CGG 0.739186 2_1:+11616606 None:intergenic
GTATAGCTTAGATGACACAG+TGG 0.805097 2_1:+11618679 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATATTGACTAATTATT+TGG - chr2_1:11614468-11614487 Msa0195010:CDS 10.0%
!!! ATTTTTCTATACTTAAAAAT+CGG - chr2_1:11614846-11614865 Msa0195010:intron 10.0%
!! AGAAAAATAAAATTATTACA+TGG - chr2_1:11615554-11615573 Msa0195010:intron 10.0%
!!! TATAAAATAATTTTAGAAGT+TGG - chr2_1:11617819-11617838 Msa0195010:intron 10.0%
!! TTTCAATTTAATTACAAAAA+TGG - chr2_1:11619255-11619274 Msa0195010:intron 10.0%
!! ATATAAAACATAAAATTACA+TGG + chr2_1:11619474-11619493 None:intergenic 10.0%
!!! TAAATTTTGACAAATTTTCA+TGG - chr2_1:11614538-11614557 Msa0195010:CDS 15.0%
!!! ATTTTTTGCTTTTTTTAGTA+TGG - chr2_1:11615234-11615253 Msa0195010:intron 15.0%
!!! TTTTTTGCTTTTTTTAGTAT+GGG - chr2_1:11615235-11615254 Msa0195010:intron 15.0%
!!! ATTTTCACAATCTAAATATT+AGG - chr2_1:11615379-11615398 Msa0195010:intron 15.0%
!!! ATGATTTTTTTGTTTAGAAA+AGG - chr2_1:11615817-11615836 Msa0195010:CDS 15.0%
!!! GGTAAAATTCTTTTTATATT+TGG - chr2_1:11616026-11616045 Msa0195010:CDS 15.0%
!!! AAAATTCTTTTTATATTTGG+AGG - chr2_1:11616029-11616048 Msa0195010:intron 15.0%
!!! TGAATATTTAATTTGCATAT+TGG + chr2_1:11616155-11616174 None:intergenic 15.0%
!!! ATGATATTCTAAAAAATGAA+TGG - chr2_1:11616597-11616616 Msa0195010:intron 15.0%
!!! TTTTAACCTTTTATTTTTCT+TGG - chr2_1:11617184-11617203 Msa0195010:CDS 15.0%
!! AATAGAAAAAAATTGATTGT+AGG + chr2_1:11617754-11617773 None:intergenic 15.0%
!! AACATTCTATAATGAAAAAT+TGG - chr2_1:11618157-11618176 Msa0195010:intron 15.0%
!! TTCAAATTTGTATATATTGT+TGG - chr2_1:11618289-11618308 Msa0195010:intron 15.0%
!!! TTTTAAAAACAAACAAGAAA+TGG - chr2_1:11618841-11618860 Msa0195010:intron 15.0%
!!! ATATATGACATTTCATTTTA+TGG - chr2_1:11619039-11619058 Msa0195010:intron 15.0%
!!! TTTCTATATTTTTGTGTATT+TGG - chr2_1:11619201-11619220 Msa0195010:intron 15.0%
!! GAAAATATAACAAAAAATAC+AGG - chr2_1:11619361-11619380 Msa0195010:CDS 15.0%
!!! TATAAAAAATGCAAATTTTG+TGG + chr2_1:11619590-11619609 None:intergenic 15.0%
!! AAAATGAATACTACTAAACT+TGG + chr2_1:11613285-11613304 None:intergenic 20.0%
!!! TTTAGTAGTATTCATTTTCT+GGG - chr2_1:11613287-11613306 Msa0195010:three_prime_UTR 20.0%
!!! AGTACAATTCTTTTTCTTTT+TGG - chr2_1:11613513-11613532 Msa0195010:CDS 20.0%
!!! TTAAGTTGTTTATCCAAATA+TGG - chr2_1:11614210-11614229 Msa0195010:intron 20.0%
!! TTTCAAAATGACCTTAATAA+TGG - chr2_1:11614698-11614717 Msa0195010:CDS 20.0%
!! TAAGAGATTTACAAGAAAAA+AGG - chr2_1:11614810-11614829 Msa0195010:intron 20.0%
!!! TTTAAGTGCATATCTTTTAA+TGG - chr2_1:11614994-11615013 Msa0195010:intron 20.0%
!! GAAATTAAATTATGACATGT+TGG + chr2_1:11615584-11615603 None:intergenic 20.0%
!! TCTTTCATTTAAATCTCTAT+AGG - chr2_1:11615602-11615621 Msa0195010:intron 20.0%
!! AACTCTACTTTAATATTGTT+TGG - chr2_1:11615689-11615708 Msa0195010:intron 20.0%
!! ACTCTACTTTAATATTGTTT+GGG - chr2_1:11615690-11615709 Msa0195010:intron 20.0%
!! TGAAAGATTATATTACTTCA+GGG - chr2_1:11615956-11615975 Msa0195010:CDS 20.0%
!! TTCATCACAATATAACTAAA+CGG + chr2_1:11616120-11616139 None:intergenic 20.0%
!!! AATAAGCATAAAAGTTTTCA+AGG - chr2_1:11616405-11616424 Msa0195010:intron 20.0%
!!! ATTTTAAGTTCAAATGTCAT+TGG - chr2_1:11616460-11616479 Msa0195010:intron 20.0%
!! AATTTCATATTTGAAAACTG+AGG + chr2_1:11616931-11616950 None:intergenic 20.0%
!! AAACCTTGATATATATGAAA+TGG + chr2_1:11617658-11617677 None:intergenic 20.0%
!! GAAAATAACATATGACATAT+AGG + chr2_1:11618137-11618156 None:intergenic 20.0%
!! GAATGATTGGAATAAAATAA+GGG + chr2_1:11618400-11618419 None:intergenic 20.0%
!! AAAGTATGTTTATTGAATCA+TGG + chr2_1:11618422-11618441 None:intergenic 20.0%
!!! ATTCAATATTAGCATTTTAC+AGG + chr2_1:11619078-11619097 None:intergenic 20.0%
!!! TAACAAAAAATACAGGTTTT+TGG - chr2_1:11619368-11619387 Msa0195010:CDS 20.0%
!! TTCGTAATTAAATATGTAGA+AGG - chr2_1:11619396-11619415 Msa0195010:CDS 20.0%
!!! TTTTTTTTTCTTCAGGATTT+TGG - chr2_1:11619444-11619463 Msa0195010:CDS 20.0%
!! TATGATCAATTATGTTGTTA+AGG - chr2_1:11619491-11619510 Msa0195010:intron 20.0%
!! ATGATCAATTATGTTGTTAA+GGG - chr2_1:11619492-11619511 Msa0195010:intron 20.0%
!! TATTACTATTAGGACATATA+TGG - chr2_1:11619837-11619856 Msa0195010:intron 20.0%
!! ATTACTATTAGGACATATAT+GGG - chr2_1:11619838-11619857 Msa0195010:intron 20.0%
!! CTGTAATTGTAATTGAATTA+TGG - chr2_1:11620044-11620063 Msa0195010:intron 20.0%
! AAAAAACACGGAAATAGAAA+CGG + chr2_1:11613138-11613157 None:intergenic 25.0%
!! GTTTAGTAGTATTCATTTTC+TGG - chr2_1:11613286-11613305 Msa0195010:three_prime_UTR 25.0%
!! CAAAGATTGTAACTTTTCAT+TGG + chr2_1:11613313-11613332 None:intergenic 25.0%
! AGAAGAAGAATAAAGATGTT+TGG - chr2_1:11613450-11613469 Msa0195010:three_prime_UTR 25.0%
!! TGTGGTTATTACTAAGTTTT+TGG - chr2_1:11613753-11613772 Msa0195010:intron 25.0%
! TAATTACATACATAGGATCT+AGG + chr2_1:11613930-11613949 None:intergenic 25.0%
! AGATCCTATGTATGTAATTA+TGG - chr2_1:11613930-11613949 Msa0195010:intron 25.0%
! GATCCTATGTATGTAATTAT+GGG - chr2_1:11613931-11613950 Msa0195010:intron 25.0%
! ATTCCCATAATTACATACAT+AGG + chr2_1:11613937-11613956 None:intergenic 25.0%
! CAACATACTATTCATTTCAT+TGG - chr2_1:11614508-11614527 Msa0195010:CDS 25.0%
! CAAGAAAAAAGGAAAAGAAA+AGG - chr2_1:11614821-11614840 Msa0195010:intron 25.0%
! GTAAGTATAACAACATAGAA+TGG + chr2_1:11614970-11614989 None:intergenic 25.0%
! AAAAGATATGCACTTAAATC+AGG + chr2_1:11614992-11615011 None:intergenic 25.0%
! ATTACATTTGCAAATGACAT+GGG + chr2_1:11615173-11615192 None:intergenic 25.0%
! TATTACATTTGCAAATGACA+TGG + chr2_1:11615174-11615193 None:intergenic 25.0%
!!! TTTTGTAGAAAGTTGATCTT+GGG - chr2_1:11615342-11615361 Msa0195010:intron 25.0%
! CTCTACTTTAATATTGTTTG+GGG - chr2_1:11615691-11615710 Msa0195010:intron 25.0%
! TCTACTTTAATATTGTTTGG+GGG - chr2_1:11615692-11615711 Msa0195010:intron 25.0%
! AAGGTTAGAAATCAAAAGTT+TGG - chr2_1:11615836-11615855 Msa0195010:CDS 25.0%
!! ATCAAAAGTTTGGATTTTGA+CGG - chr2_1:11615846-11615865 Msa0195010:CDS 25.0%
! AAGTAATATAATCTTTCAGG+AGG + chr2_1:11615954-11615973 None:intergenic 25.0%
! CTGAAGTAATATAATCTTTC+AGG + chr2_1:11615957-11615976 None:intergenic 25.0%
! CTGAAAGATTATATTACTTC+AGG - chr2_1:11615955-11615974 Msa0195010:CDS 25.0%
! GAAAGATTATATTACTTCAG+GGG - chr2_1:11615957-11615976 Msa0195010:CDS 25.0%
! TTTGCATATTGGAAATCAAT+AGG + chr2_1:11616144-11616163 None:intergenic 25.0%
! ATTCATTTCTTATATCCAGA+TGG - chr2_1:11616170-11616189 Msa0195010:CDS 25.0%
!!! TTACTTTTATTAACTTCCTC+AGG + chr2_1:11616440-11616459 None:intergenic 25.0%
! TTCAAATGTCATTGGAAATT+TGG - chr2_1:11616468-11616487 Msa0195010:intron 25.0%
! CAGGAAAGTTAAAATTTGTA+AGG + chr2_1:11616544-11616563 None:intergenic 25.0%
! AAATAAAATGTTCACCTTGT+TGG + chr2_1:11616660-11616679 None:intergenic 25.0%
! TATAAGTGCAAAAGACTAAA+TGG + chr2_1:11616775-11616794 None:intergenic 25.0%
!! TATAACTCAGATTTTGTTCA+AGG - chr2_1:11616791-11616810 Msa0195010:intron 25.0%
! AAGAATTCAATGTAGATGAT+AGG - chr2_1:11617490-11617509 Msa0195010:CDS 25.0%
!!! AATGTGGTTTTAATGTATGA+TGG - chr2_1:11617589-11617608 Msa0195010:intron 25.0%
! CAACCATTTCATATATATCA+AGG - chr2_1:11617652-11617671 Msa0195010:intron 25.0%
!!! CTATTACTCATTTTTATCCT+AGG - chr2_1:11617769-11617788 Msa0195010:intron 25.0%
!!! TCATTTTTATCCTAGGATTT+GGG - chr2_1:11617776-11617795 Msa0195010:intron 25.0%
!!! AATTTTAGAAGTTGGAAAGT+TGG - chr2_1:11617827-11617846 Msa0195010:intron 25.0%
!!! TAAAAGTTGATGAATATTGC+AGG - chr2_1:11617850-11617869 Msa0195010:intron 25.0%
! GAAATCTTTGCAAATTGAAT+TGG + chr2_1:11617984-11618003 None:intergenic 25.0%
! ATTCAATTTGCAAAGATTTC+TGG - chr2_1:11617984-11618003 Msa0195010:CDS 25.0%
!!! AAAGATTTCTGGTAGAAAAT+GGG - chr2_1:11617995-11618014 Msa0195010:intron 25.0%
! GTAACAGTTAAAGAAATTGA+GGG - chr2_1:11618043-11618062 Msa0195010:intron 25.0%
!!! TTTTGATTCTGCAATAACTT+GGG + chr2_1:11618079-11618098 None:intergenic 25.0%
!!! ATTTTGATTCTGCAATAACT+TGG + chr2_1:11618080-11618099 None:intergenic 25.0%
!! CACTTTTAATGTCTATACTA+CGG + chr2_1:11618106-11618125 None:intergenic 25.0%
! GTATATATTGTTGGAAAATC+AGG - chr2_1:11618298-11618317 Msa0195010:intron 25.0%
! TTCAGATCTTCCTTTATTAT+AGG - chr2_1:11618366-11618385 Msa0195010:intron 25.0%
! GGAATAAGTACCTATAATAA+AGG + chr2_1:11618379-11618398 None:intergenic 25.0%
! GGAATGATTGGAATAAAATA+AGG + chr2_1:11618401-11618420 None:intergenic 25.0%
! TTATTGAATCATGGAATGAT+TGG + chr2_1:11618413-11618432 None:intergenic 25.0%
!! GATTCTTTTCGAAAAAATCT+AGG - chr2_1:11618614-11618633 Msa0195010:intron 25.0%
!! TTTCGAAAAAATCTAGGTTT+TGG - chr2_1:11618620-11618639 Msa0195010:intron 25.0%
!!! AATGCCAAATTTTGTTATCA+GGG + chr2_1:11618756-11618775 None:intergenic 25.0%
! ACAAGAAATGGATAAAACAA+TGG - chr2_1:11618853-11618872 Msa0195010:intron 25.0%
!!! TGTTTTAGATGATACACAAA+AGG - chr2_1:11619015-11619034 Msa0195010:intron 25.0%
!! ACAAAACTTTAAAAACAGCA+AGG + chr2_1:11619295-11619314 None:intergenic 25.0%
! AATCCTGAAGAAAAAAAAAC+TGG + chr2_1:11619443-11619462 None:intergenic 25.0%
! ACAAAGCTCATATTACTATT+AGG - chr2_1:11619827-11619846 Msa0195010:five_prime_UTR 25.0%
! TCATATTTGATCTGAACAAT+TGG + chr2_1:11619938-11619957 None:intergenic 25.0%
!! TCTAAAATCTCATTTCTGTA+TGG + chr2_1:11619972-11619991 None:intergenic 25.0%
!! ACATTTCAGATTCTTTGAAA+CGG - chr2_1:11619992-11620011 Msa0195010:intron 25.0%
! TTACAATTACAGTTAATGAC+TGG + chr2_1:11620036-11620055 None:intergenic 25.0%
TTGTTGGGAAACAAAAAACA+CGG + chr2_1:11613150-11613169 None:intergenic 30.0%
!! TTGATGATGTTTGGTTAGTA+AGG + chr2_1:11613176-11613195 None:intergenic 30.0%
AACATTCTTAGTTAGTGACA+AGG + chr2_1:11613215-11613234 None:intergenic 30.0%
AACAAAGTCAACACTGAAAA+TGG + chr2_1:11613258-11613277 None:intergenic 30.0%
GAAAACAAAACCACACAAAA+GGG + chr2_1:11613361-11613380 None:intergenic 30.0%
TGAAAACAAAACCACACAAA+AGG + chr2_1:11613362-11613381 None:intergenic 30.0%
!!! TTGTTTTTGTAGAGTGAAGA+AGG - chr2_1:11613606-11613625 Msa0195010:intron 30.0%
TAGAGTTTGCATTTCGTTTA+GGG + chr2_1:11613678-11613697 None:intergenic 30.0%
!!! CTAAGTTTTTGGCTTCTTTT+AGG - chr2_1:11613764-11613783 Msa0195010:intron 30.0%
TTTCTATAAGCTCTTCTGAA+CGG + chr2_1:11614038-11614057 None:intergenic 30.0%
ACTACTGATCTGTTATTCAT+TGG - chr2_1:11614290-11614309 Msa0195010:CDS 30.0%
CATTGAGAATAAGATGATAG+TGG - chr2_1:11614332-11614351 Msa0195010:CDS 30.0%
ATACTATTCATTTCATTGGC+AGG - chr2_1:11614512-11614531 Msa0195010:CDS 30.0%
!!! TTGCAAATTTTAACTGCATC+TGG + chr2_1:11614880-11614899 None:intergenic 30.0%
TTGCAAATACAAACCTATCT+CGG - chr2_1:11614894-11614913 Msa0195010:intron 30.0%
AAGCATAAGAGAATTGAGAT+AGG + chr2_1:11615057-11615076 None:intergenic 30.0%
! CTTGATAATAATTTGACACC+AGG - chr2_1:11615074-11615093 Msa0195010:intron 30.0%
TTACATTTGCAAATGACATG+GGG + chr2_1:11615172-11615191 None:intergenic 30.0%
! TGCATTTTCAATATTCCTAC+CGG + chr2_1:11615314-11615333 None:intergenic 30.0%
AGATCAACTTTCTACAAAAC+AGG + chr2_1:11615341-11615360 None:intergenic 30.0%
!! GTTTTGTAGAAAGTTGATCT+TGG - chr2_1:11615341-11615360 Msa0195010:intron 30.0%
! TTTGTAGAAAGTTGATCTTG+GGG - chr2_1:11615343-11615362 Msa0195010:intron 30.0%
! GATATGTTGACTATTCTGAT+AGG + chr2_1:11615432-11615451 None:intergenic 30.0%
TCAGAATAGTCAACATATCA+TGG - chr2_1:11615433-11615452 Msa0195010:intron 30.0%
GATATTTACATGCATGAAGA+AGG - chr2_1:11615455-11615474 Msa0195010:intron 30.0%
ACTACTTAGCTAATCAAATC+AGG + chr2_1:11615494-11615513 None:intergenic 30.0%
! ATTTGATTAGCTAAGTAGTC+AGG - chr2_1:11615495-11615514 Msa0195010:intron 30.0%
!! TCAAAAGTTTGGATTTTGAC+GGG - chr2_1:11615847-11615866 Msa0195010:CDS 30.0%
TATATCATGTTGTTGTGAGT+AGG + chr2_1:11615877-11615896 None:intergenic 30.0%
CAGATTAAATTTCAGATGCA+TGG + chr2_1:11615909-11615928 None:intergenic 30.0%
TGCAAGGGAAATAACAAAAA+CGG - chr2_1:11616371-11616390 Msa0195010:intron 30.0%
! TCATTGGAAATTTGGAATGA+TGG - chr2_1:11616476-11616495 Msa0195010:intron 30.0%
! AACTTTCCTGTATACTTTTC+AGG - chr2_1:11616554-11616573 Msa0195010:intron 30.0%
TAATGATACGTAAACATGAC+AGG + chr2_1:11616685-11616704 None:intergenic 30.0%
AGTACTAAAATCCCACAATT+TGG - chr2_1:11616825-11616844 Msa0195010:intron 30.0%
TCACAGCCAAGAAAAATAAA+AGG + chr2_1:11617193-11617212 None:intergenic 30.0%
!!! TGTTTTTCAAGTATAGATCC+TGG + chr2_1:11617285-11617304 None:intergenic 30.0%
! CTAGATTTTGTATAGCAACA+GGG + chr2_1:11617356-11617375 None:intergenic 30.0%
! TTCTGAAAGGAAATCTTTGT+CGG - chr2_1:11617395-11617414 Msa0195010:intron 30.0%
CATGATCAAATTGACTGTTA+TGG + chr2_1:11617467-11617486 None:intergenic 30.0%
ATTAAAACCACATTAGAGCA+TGG + chr2_1:11617583-11617602 None:intergenic 30.0%
AGGAAATGAAGGAAACTAAT+AGG + chr2_1:11617713-11617732 None:intergenic 30.0%
!! CTCATTTTTATCCTAGGATT+TGG - chr2_1:11617775-11617794 Msa0195010:intron 30.0%
ATCATTAAAACCCAAATCCT+AGG + chr2_1:11617789-11617808 None:intergenic 30.0%
AGAGATTAGGATTTGAAGAA+GGG - chr2_1:11617881-11617900 Msa0195010:intron 30.0%
! GGAGCAGAATTTAATGTTTT+TGG - chr2_1:11617922-11617941 Msa0195010:intron 30.0%
!!! TAATGTTTTTGGTGAGCTTT+CGG - chr2_1:11617933-11617952 Msa0195010:intron 30.0%
!! CAAAGATTTCTGGTAGAAAA+TGG - chr2_1:11617994-11618013 Msa0195010:intron 30.0%
CGTAACAGTTAAAGAAATTG+AGG - chr2_1:11618042-11618061 Msa0195010:intron 30.0%
TCACTTCTCATCAAAGTAAT+TGG + chr2_1:11618185-11618204 None:intergenic 30.0%
! CCTGATGAATTTATGTTTTC+AGG + chr2_1:11618680-11618699 None:intergenic 30.0%
CCTGAAAACATAAATTCATC+AGG - chr2_1:11618677-11618696 Msa0195010:CDS 30.0%
!! GAATGCCAAATTTTGTTATC+AGG + chr2_1:11618757-11618776 None:intergenic 30.0%
GATAACAAAATTTGGCATTC+TGG - chr2_1:11618757-11618776 Msa0195010:intron 30.0%
ATTGAATGTGTTAACTTAGC+AGG - chr2_1:11619091-11619110 Msa0195010:intron 30.0%
GAAAAAAAAACTGGCAAGTT+TGG + chr2_1:11619434-11619453 None:intergenic 30.0%
!!! TTGCCAGTTTTTTTTTCTTC+AGG - chr2_1:11619437-11619456 Msa0195010:CDS 30.0%
! TGATATTTTGTCACCATACT+TGG - chr2_1:11619627-11619646 Msa0195010:intron 30.0%
! GATATTTTGTCACCATACTT+GGG - chr2_1:11619628-11619647 Msa0195010:intron 30.0%
ATGTTTAAGAAACCCAAGTA+TGG + chr2_1:11619643-11619662 None:intergenic 30.0%
TCAACACACTTCTCTCTATT+CGG - chr2_1:11613110-11613129 Msa0195010:three_prime_UTR 35.0%
TGGTTAGTAAGGAAGTTGTT+GGG + chr2_1:11613165-11613184 None:intergenic 35.0%
TTGGTTAGTAAGGAAGTTGT+TGG + chr2_1:11613166-11613185 None:intergenic 35.0%
CCAAACATCATCAACTTTCT+CGG - chr2_1:11613182-11613201 Msa0195010:three_prime_UTR 35.0%
TCTCGTAAACACAAGAAACT+TGG - chr2_1:11613477-11613496 Msa0195010:exon 35.0%
AAGGAACTAGAAGTCCTATT+AGG - chr2_1:11613650-11613669 Msa0195010:intron 35.0%
GTAGAGTTTGCATTTCGTTT+AGG + chr2_1:11613679-11613698 None:intergenic 35.0%
TTCAGCTTCATTCTTTGTGT+TGG - chr2_1:11613709-11613728 Msa0195010:intron 35.0%
TCAGCTTCATTCTTTGTGTT+GGG - chr2_1:11613710-11613729 Msa0195010:intron 35.0%
!!! CTTTGTGTTGGGTTGAATTT+TGG - chr2_1:11613721-11613740 Msa0195010:intron 35.0%
!!! TTTGGCTTCTTTTAGGATGA+TGG - chr2_1:11613771-11613790 Msa0195010:intron 35.0%
!!! TTGGCTTCTTTTAGGATGAT+GGG - chr2_1:11613772-11613791 Msa0195010:intron 35.0%
! GATTGCCAATTTTCTTCTAC+TGG - chr2_1:11613828-11613847 Msa0195010:intron 35.0%
! GAAGTTTTCATAAGCTATCC+TGG + chr2_1:11614087-11614106 None:intergenic 35.0%
CATCTTATTCTCAATGACAC+AGG + chr2_1:11614328-11614347 None:intergenic 35.0%
!! GAGAATAAGATGATAGTGGT+TGG - chr2_1:11614336-11614355 Msa0195010:CDS 35.0%
!! AATAAGATGATAGTGGTTGG+TGG - chr2_1:11614339-11614358 Msa0195010:CDS 35.0%
!!! TGAGGGAACATTTCTAGTTT+TGG - chr2_1:11614401-11614420 Msa0195010:CDS 35.0%
! AGAGCATCATGCCATTATTA+AGG + chr2_1:11614712-11614731 None:intergenic 35.0%
TAATTTGACACCAGGTTTCT+TGG - chr2_1:11615082-11615101 Msa0195010:intron 35.0%
AATTTGACACCAGGTTTCTT+GGG - chr2_1:11615083-11615102 Msa0195010:intron 35.0%
!!! CAGATATTTTGTCGATTCCT+GGG + chr2_1:11615143-11615162 None:intergenic 35.0%
CTGACCAAATATCTTGTTCT+TGG - chr2_1:11615630-11615649 Msa0195010:intron 35.0%
TCTGCCAAGAACAAGATATT+TGG + chr2_1:11615637-11615656 None:intergenic 35.0%
! GTATTCACTCGACTTTGAAA+CGG - chr2_1:11616082-11616101 Msa0195010:intron 35.0%
TTTCTTATATCCAGATGGCA+TGG - chr2_1:11616175-11616194 Msa0195010:CDS 35.0%
ACTAAGTGGTATATTACAGG+CGG - chr2_1:11616264-11616283 Msa0195010:intron 35.0%
GGTAAAGAAATGAGAGACAT+GGG + chr2_1:11616333-11616352 None:intergenic 35.0%
AGGTAAAGAAATGAGAGACA+TGG + chr2_1:11616334-11616353 None:intergenic 35.0%
!! TTGTTGGTAGTGATAGAAGA+AGG + chr2_1:11616644-11616663 None:intergenic 35.0%
TTCTTCTATCACTACCAACA+AGG - chr2_1:11616643-11616662 Msa0195010:CDS 35.0%
! TCAGATTTTGTTCAAGGTAG+TGG - chr2_1:11616797-11616816 Msa0195010:intron 35.0%
! CAGATTTTGTTCAAGGTAGT+GGG - chr2_1:11616798-11616817 Msa0195010:intron 35.0%
TAGTGAACTTCCATTTAACC+AGG + chr2_1:11616854-11616873 None:intergenic 35.0%
! GAAGTTCACTAGACATGTTT+TGG - chr2_1:11616863-11616882 Msa0195010:intron 35.0%
GGAAAATTAAATCCTAGCGA+AGG + chr2_1:11616910-11616929 None:intergenic 35.0%
ATGATTTCCGTTGTATTAGC+AGG - chr2_1:11617022-11617041 Msa0195010:CDS 35.0%
TGATTTCCGTTGTATTAGCA+GGG - chr2_1:11617023-11617042 Msa0195010:CDS 35.0%
CTAAAACCCTGCTAATACAA+CGG + chr2_1:11617032-11617051 None:intergenic 35.0%
!!! CTGATTTGATGCCTCTTTTT+TGG + chr2_1:11617108-11617127 None:intergenic 35.0%
!! CAAAAAAGAGGCATCAAATC+AGG - chr2_1:11617106-11617125 Msa0195010:intron 35.0%
!! TTATTTTTCTTGGCTGTGAC+AGG - chr2_1:11617194-11617213 Msa0195010:CDS 35.0%
! AGAGTCATTTCTAAGTTGAG+TGG + chr2_1:11617316-11617335 None:intergenic 35.0%
! GCTAGATTTTGTATAGCAAC+AGG + chr2_1:11617357-11617376 None:intergenic 35.0%
!! CAATTAAACGTGGTTCTGAA+AGG - chr2_1:11617382-11617401 Msa0195010:intron 35.0%
TGTTATGGAAGATGTTGGTA+GGG + chr2_1:11617452-11617471 None:intergenic 35.0%
TTGACTGTTATGGAAGATGT+TGG + chr2_1:11617457-11617476 None:intergenic 35.0%
ATGTAGATGATAGGATTGAC+AGG - chr2_1:11617499-11617518 Msa0195010:CDS 35.0%
! AGAACTTCTGTTTTACCTGA+GGG + chr2_1:11617548-11617567 None:intergenic 35.0%
! AAGAACTTCTGTTTTACCTG+AGG + chr2_1:11617549-11617568 None:intergenic 35.0%
ATCATAACCATGCTCTAATG+TGG - chr2_1:11617573-11617592 Msa0195010:CDS 35.0%
! TCAAGGTTTGATTGTGCTTT+TGG - chr2_1:11617669-11617688 Msa0195010:intron 35.0%
TAATAGGCAGAAAAATCTCG+AGG + chr2_1:11617697-11617716 None:intergenic 35.0%
GTGCTTAACTTAGGAAATGA+AGG + chr2_1:11617724-11617743 None:intergenic 35.0%
GGATTGTATGTGCTTAACTT+AGG + chr2_1:11617733-11617752 None:intergenic 35.0%
GAGAGATTAGGATTTGAAGA+AGG - chr2_1:11617880-11617899 Msa0195010:intron 35.0%
!!! CTTTTTTTGTCGTCAAAGGA+GGG + chr2_1:11618229-11618248 None:intergenic 35.0%
!!! ACTTTTTTTGTCGTCAAAGG+AGG + chr2_1:11618230-11618249 None:intergenic 35.0%
!!! GTCACTTTTTTTGTCGTCAA+AGG + chr2_1:11618233-11618252 None:intergenic 35.0%
TATCACAAGTATTAGCACCA+GGG + chr2_1:11618255-11618274 None:intergenic 35.0%
TTATCACAAGTATTAGCACC+AGG + chr2_1:11618256-11618275 None:intergenic 35.0%
AGAACATATCAAAATGACCC+TGG - chr2_1:11618530-11618549 Msa0195010:intron 35.0%
!!! CTGTTCCTCCATATTGATTT+TGG + chr2_1:11618579-11618598 None:intergenic 35.0%
CAAAATCAATATGGAGGAAC+AGG - chr2_1:11618577-11618596 Msa0195010:intron 35.0%
TCCTCCCTGATAACAAAATT+TGG - chr2_1:11618749-11618768 Msa0195010:intron 35.0%
GACAATGTTAGATAGGTTGT+TGG + chr2_1:11618948-11618967 None:intergenic 35.0%
ATGTTCAAGCCTTACATTGT+CGG + chr2_1:11618975-11618994 None:intergenic 35.0%
ATAGAGTTGTGATCAATCCA+AGG + chr2_1:11619182-11619201 None:intergenic 35.0%
CAATTATGTTGTTAAGGGTG+AGG - chr2_1:11619497-11619516 Msa0195010:intron 35.0%
! AAACCTTTTCATGTGCAATG+AGG - chr2_1:11619751-11619770 Msa0195010:intron 35.0%
!! TATATGGGAAGTGCATTTTG+AGG - chr2_1:11619853-11619872 Msa0195010:intron 35.0%
!! ATATGGGAAGTGCATTTTGA+GGG - chr2_1:11619854-11619873 Msa0195010:intron 35.0%
CATTAACACTGCATCTTTAG+AGG + chr2_1:11619901-11619920 None:intergenic 35.0%
ATGCAGTGTTAATGCATTAC+TGG - chr2_1:11619907-11619926 Msa0195010:intron 35.0%
!! CCGAGAAAGTTGATGATGTT+TGG + chr2_1:11613185-11613204 None:intergenic 40.0%
! TAACTAGCTACCCTTTTGTG+TGG - chr2_1:11613348-11613367 Msa0195010:three_prime_UTR 40.0%
GTAAACACAAGAAACTTGGC+AGG - chr2_1:11613481-11613500 Msa0195010:exon 40.0%
CAACTTTCTGATACCACACA+AGG - chr2_1:11613631-11613650 Msa0195010:intron 40.0%
! TTTCGTTTAGGGTGCCTAAT+AGG + chr2_1:11613667-11613686 None:intergenic 40.0%
!!! GAATTTTGGAACAGTGAGTG+TGG - chr2_1:11613735-11613754 Msa0195010:intron 40.0%
!!! TGGCTTCTTTTAGGATGATG+GGG - chr2_1:11613773-11613792 Msa0195010:intron 40.0%
!!! TTTTAGGATGATGGGGTTGA+AGG - chr2_1:11613780-11613799 Msa0195010:intron 40.0%
!! TTTAGGATGATGGGGTTGAA+GGG - chr2_1:11613781-11613800 Msa0195010:intron 40.0%
CAGGTCCAGTAGAAGAAAAT+TGG + chr2_1:11613836-11613855 None:intergenic 40.0%
GATGCACAGTTACTTATCTC+AGG + chr2_1:11613855-11613874 None:intergenic 40.0%
GAGATAAGTAACTGTGCATC+AGG - chr2_1:11613855-11613874 Msa0195010:intron 40.0%
CATCAGGTAGTTCAGAGAAT+TGG - chr2_1:11613871-11613890 Msa0195010:intron 40.0%
AGGTAGTTCAGAGAATTGGA+TGG - chr2_1:11613875-11613894 Msa0195010:intron 40.0%
CATACATAGGATCTAGGAGT+AGG + chr2_1:11613924-11613943 None:intergenic 40.0%
GACATATCTATAAGCTCTCC+AGG - chr2_1:11614066-11614085 Msa0195010:intron 40.0%
CGTATGACGAAGACCATATT+TGG + chr2_1:11614226-11614245 None:intergenic 40.0%
GTATAGCTTAGATGACACAG+TGG + chr2_1:11614565-11614584 None:intergenic 40.0%
TTGCAAGCTGGAATCTGTAA+CGG + chr2_1:11614606-11614625 None:intergenic 40.0%
TTACAGATTCCAGCTTGCAA+GGG - chr2_1:11614606-11614625 Msa0195010:CDS 40.0%
TGATGCTCTCATCATAGACA+TGG - chr2_1:11614723-11614742 Msa0195010:CDS 40.0%
CAAATACAAACCTATCTCGG+AGG - chr2_1:11614897-11614916 Msa0195010:intron 40.0%
AAACCTATCTCGGAGGAAAA+TGG - chr2_1:11614904-11614923 Msa0195010:intron 40.0%
GGAGGAAAATGGAGAGTTTA+GGG - chr2_1:11614915-11614934 Msa0195010:intron 40.0%
ATTTGACACCAGGTTTCTTG+GGG - chr2_1:11615084-11615103 Msa0195010:intron 40.0%
!!! CCAGATATTTTGTCGATTCC+TGG + chr2_1:11615144-11615163 None:intergenic 40.0%
CCAGGAATCGACAAAATATC+TGG - chr2_1:11615141-11615160 Msa0195010:intron 40.0%
CTTTGTCGTGATTCATGTTG+TGG - chr2_1:11615195-11615214 Msa0195010:intron 40.0%
TTACATGCATGAAGAAGGTG+TGG - chr2_1:11615460-11615479 Msa0195010:intron 40.0%
AGTTTGCCCTAACAGTTGTA+TGG + chr2_1:11615673-11615692 None:intergenic 40.0%
TTGATCTCAAGTCCTTGACA+TGG - chr2_1:11615756-11615775 Msa0195010:CDS 40.0%
TTATTCTTGACCATGCCATC+TGG + chr2_1:11616188-11616207 None:intergenic 40.0%
GATGGCATGGTCAAGAATAA+AGG - chr2_1:11616188-11616207 Msa0195010:CDS 40.0%
! GTGTTTTATGTGGCACTAAG+TGG - chr2_1:11616250-11616269 Msa0195010:intron 40.0%
GGCACTAAGTGGTATATTAC+AGG - chr2_1:11616261-11616280 Msa0195010:intron 40.0%
! GCAGTTAGCGTTGAAAGAAA+AGG + chr2_1:11616354-11616373 None:intergenic 40.0%
TTCTTTCAACGCTAACTGCA+AGG - chr2_1:11616355-11616374 Msa0195010:intron 40.0%
TCTTTCAACGCTAACTGCAA+GGG - chr2_1:11616356-11616375 Msa0195010:intron 40.0%
! TTCAAGGTTTTTCTCACCTG+AGG - chr2_1:11616421-11616440 Msa0195010:intron 40.0%
! CCATGTCCTGAAAAGTATAC+AGG + chr2_1:11616563-11616582 None:intergenic 40.0%
!! CCTGTATACTTTTCAGGACA+TGG - chr2_1:11616560-11616579 Msa0195010:intron 40.0%
!! TTGGTAGTGATAGAAGAAGG+AGG + chr2_1:11616641-11616660 None:intergenic 40.0%
AATTTGGCCTCCTGGTTAAA+TGG - chr2_1:11616841-11616860 Msa0195010:intron 40.0%
TGAACTTCCATTTAACCAGG+AGG + chr2_1:11616851-11616870 None:intergenic 40.0%
TACTGATGAAAACCTTCGCT+AGG - chr2_1:11616895-11616914 Msa0195010:intron 40.0%
AAGTATAGATCCTGGACCTT+TGG + chr2_1:11617277-11617296 None:intergenic 40.0%
AACAGGGTCGATAAAACGTT+GGG + chr2_1:11617340-11617359 None:intergenic 40.0%
CTAGCATCTGCAATTAAACG+TGG - chr2_1:11617372-11617391 Msa0195010:intron 40.0%
TCTCTGTTCGTACAAGATTC+TGG - chr2_1:11617420-11617439 Msa0195010:intron 40.0%
CTGTTATGGAAGATGTTGGT+AGG + chr2_1:11617453-11617472 None:intergenic 40.0%
TGATAGGATTGACAGGCATT+TGG - chr2_1:11617506-11617525 Msa0195010:CDS 40.0%
AGATGAAAGTTCTTTCCCTC+AGG - chr2_1:11617530-11617549 Msa0195010:CDS 40.0%
GGATTTGAAGAAGGGAAAAG+TGG - chr2_1:11617889-11617908 Msa0195010:intron 40.0%
! GGGAAAAGTGGAGACTTTTT+AGG - chr2_1:11617901-11617920 Msa0195010:intron 40.0%
TGTCTTCCTGCATATACTTC+AGG - chr2_1:11618496-11618515 Msa0195010:intron 40.0%
GAGAGGAGCCAAAATCAATA+TGG - chr2_1:11618568-11618587 Msa0195010:intron 40.0%
AGGAGCCAAAATCAATATGG+AGG - chr2_1:11618571-11618590 Msa0195010:intron 40.0%
! CAATATGGAGGAACAGGTTT+TGG - chr2_1:11618583-11618602 Msa0195010:intron 40.0%
!! GCCAAATTTTGTTATCAGGG+AGG + chr2_1:11618753-11618772 None:intergenic 40.0%
TGAATTACTGAGAGAGAAGC+TGG - chr2_1:11618895-11618914 Msa0195010:CDS 40.0%
TGTAAGGCTTGAACATGATG+TGG - chr2_1:11618979-11618998 Msa0195010:intron 40.0%
! ACATGATGTGGCTTTTCTGA+AGG - chr2_1:11618991-11619010 Msa0195010:intron 40.0%
! GTTCAGAAGTACACAATGAG+TGG + chr2_1:11619534-11619553 None:intergenic 40.0%
!!! GCAATCTGTTTTGACTGCAT+AGG - chr2_1:11619666-11619685 Msa0195010:intron 40.0%
CAAACAGAGACTGCAATCAA+TGG - chr2_1:11619705-11619724 Msa0195010:intron 40.0%
TGCACATGAAAAGGTTTCCT+GGG + chr2_1:11619748-11619767 None:intergenic 40.0%
TTGCACATGAAAAGGTTTCC+TGG + chr2_1:11619749-11619768 None:intergenic 40.0%
ACACCTCATTGCACATGAAA+AGG + chr2_1:11619757-11619776 None:intergenic 40.0%
! GAGCTTTGTGTCATCATTTC+TGG + chr2_1:11619816-11619835 None:intergenic 40.0%
!! AGGACTTCTAGTTCCTTGTG+TGG + chr2_1:11613647-11613666 None:intergenic 45.0%
!! TGGATGGTGTTGTCAATTGC+AGG - chr2_1:11613891-11613910 Msa0195010:intron 45.0%
!! GGATGGTGTTGTCAATTGCA+GGG - chr2_1:11613892-11613911 Msa0195010:intron 45.0%
!! GATGGTGTTGTCAATTGCAG+GGG - chr2_1:11613893-11613912 Msa0195010:intron 45.0%
!! ATAGTGGTTGGTGGTGAATC+TGG - chr2_1:11614348-11614367 Msa0195010:CDS 45.0%
!! GTTGGTGGTGAATCTGGAAA+TGG - chr2_1:11614354-11614373 Msa0195010:CDS 45.0%
TGGATTGTTAGACGATGTGC+AGG - chr2_1:11614374-11614393 Msa0195010:CDS 45.0%
GTTACAGATTCCAGCTTGCA+AGG - chr2_1:11614605-11614624 Msa0195010:CDS 45.0%
AAACTATGACCCTTGCAAGC+TGG + chr2_1:11614618-11614637 None:intergenic 45.0%
AGCTTGCAAGGGTCATAGTT+TGG - chr2_1:11614617-11614636 Msa0195010:CDS 45.0%
! TCTCCATTTTCCTCCGAGAT+AGG + chr2_1:11614910-11614929 None:intergenic 45.0%
CGGAGGAAAATGGAGAGTTT+AGG - chr2_1:11614914-11614933 Msa0195010:intron 45.0%
TTTGACACCAGGTTTCTTGG+GGG - chr2_1:11615085-11615104 Msa0195010:intron 45.0%
!! AAAAAGGCACTCCTCATTGG+AGG - chr2_1:11615108-11615127 Msa0195010:intron 45.0%
!! AAAAGGCACTCCTCATTGGA+GGG - chr2_1:11615109-11615128 Msa0195010:intron 45.0%
TGGTCACTCATGGAAGCAAA+GGG - chr2_1:11615281-11615300 Msa0195010:intron 45.0%
CAGTGGCCATACAACTGTTA+GGG - chr2_1:11615664-11615683 Msa0195010:intron 45.0%
TTGGGGGAGAAGATTGCAAA+AGG - chr2_1:11615708-11615727 Msa0195010:intron 45.0%
AACACTTACGTGCAGTGAAG+TGG + chr2_1:11615785-11615804 None:intergenic 45.0%
TCTTTCAGGAGGTAGTACGA+GGG + chr2_1:11615943-11615962 None:intergenic 45.0%
ATCTTTCAGGAGGTAGTACG+AGG + chr2_1:11615944-11615963 None:intergenic 45.0%
ACGTGGTTGAATCTTGGAGA+AGG + chr2_1:11615990-11616009 None:intergenic 45.0%
TTCTCCAAGATTCAACCACG+TGG - chr2_1:11615989-11616008 Msa0195010:CDS 45.0%
CATCATAAAGAGATGCCACG+TGG + chr2_1:11616007-11616026 None:intergenic 45.0%
CACGTGGCATCTCTTTATGA+TGG - chr2_1:11616005-11616024 Msa0195010:CDS 45.0%
! TGGTCAAGAATAAAGGTGCG+TGG - chr2_1:11616195-11616214 Msa0195010:CDS 45.0%
! GGTTGCTGTGGTGTTTTATG+TGG - chr2_1:11616240-11616259 Msa0195010:intron 45.0%
AAGTGGTATATTACAGGCGG+TGG - chr2_1:11616267-11616286 Msa0195010:intron 45.0%
GTAGTGATAGAAGAAGGAGG+CGG + chr2_1:11616638-11616657 None:intergenic 45.0%
TAACCAGGAGGCCAAATTGT+GGG + chr2_1:11616839-11616858 None:intergenic 45.0%
TTAACCAGGAGGCCAAATTG+TGG + chr2_1:11616840-11616859 None:intergenic 45.0%
!! GTATTAGCAGGGTTTTAGCC+TGG - chr2_1:11617034-11617053 Msa0195010:CDS 45.0%
! TTTTTCTTGGCTGTGACAGG+TGG - chr2_1:11617197-11617216 Msa0195010:CDS 45.0%
AGACAACCGACTAGTACCAA+AGG - chr2_1:11617258-11617277 Msa0195010:CDS 45.0%
CAACAGGGTCGATAAAACGT+TGG + chr2_1:11617341-11617360 None:intergenic 45.0%
GCAGGAGTTTGTGAGAGATT+AGG - chr2_1:11617868-11617887 Msa0195010:intron 45.0%
! AGAAGTGACCCTGATGATGA+GGG - chr2_1:11618197-11618216 Msa0195010:intron 45.0%
GACGACAAAAAAAGTGACCC+TGG - chr2_1:11618235-11618254 Msa0195010:intron 45.0%
TCGTGTGCATCTGATATCCA+GGG + chr2_1:11618550-11618569 None:intergenic 45.0%
!! AGGAACAGGTTTTGGCATCT+GGG - chr2_1:11618591-11618610 Msa0195010:intron 45.0%
!!! TCTAGGTTTTGGAAACCTCG+TGG - chr2_1:11618631-11618650 Msa0195010:CDS 45.0%
CTCGTGGTAGAAAGTGATCA+CGG - chr2_1:11618647-11618666 Msa0195010:CDS 45.0%
TCGTGGTAGAAAGTGATCAC+GGG - chr2_1:11618648-11618667 Msa0195010:CDS 45.0%
! TGGCATTCTGGAAGCACAAT+TGG - chr2_1:11618769-11618788 Msa0195010:intron 45.0%
TTACTGAGAGAGAAGCTGGT+CGG - chr2_1:11618899-11618918 Msa0195010:CDS 45.0%
TGCAGAGTTAGCTCAAGAAG+AGG - chr2_1:11618922-11618941 Msa0195010:CDS 45.0%
CGGAGTGGACAATGTTAGAT+AGG + chr2_1:11618955-11618974 None:intergenic 45.0%
TTGTCCACTCCGACAATGTA+AGG - chr2_1:11618963-11618982 Msa0195010:intron 45.0%
CAGGAATTGCACTCTACAAG+AGG - chr2_1:11619110-11619129 Msa0195010:intron 45.0%
TCTACAAGAGGAGTTCTTGC+AGG - chr2_1:11619122-11619141 Msa0195010:intron 45.0%
TCCAATTGCAGGTACATCCT+TGG - chr2_1:11619162-11619181 Msa0195010:intron 45.0%
TCCAAGGATGTACCTGCAAT+TGG + chr2_1:11619166-11619185 None:intergenic 45.0%
TGTTAAGGGTGAGGAATCTG+AGG - chr2_1:11619506-11619525 Msa0195010:intron 45.0%
TGAAAAGGTTTCCTGGGAGT+AGG + chr2_1:11619742-11619761 None:intergenic 45.0%
! GTGCAATGAGGTGTTCTTGA+TGG - chr2_1:11619763-11619782 Msa0195010:CDS 45.0%
AGGGTCAAGTGGTCATTCTG+AGG - chr2_1:11613800-11613819 Msa0195010:intron 50.0%
ATCTGTAACGGCAGGCTACT+TGG + chr2_1:11614594-11614613 None:intergenic 50.0%
AAGCTGGAATCTGTAACGGC+AGG + chr2_1:11614602-11614621 None:intergenic 50.0%
! CCTTTTTCCCCCAAGAAACC+TGG + chr2_1:11615095-11615114 None:intergenic 50.0%
CCAGGTTTCTTGGGGGAAAA+AGG - chr2_1:11615092-11615111 Msa0195010:intron 50.0%
!! GGGAAAAAGGCACTCCTCAT+TGG - chr2_1:11615105-11615124 Msa0195010:intron 50.0%
! GGTCTGTTTTCCCTCCAATG+AGG + chr2_1:11615122-11615141 None:intergenic 50.0%
ATTGGAGGGAAAACAGACCC+AGG - chr2_1:11615123-11615142 Msa0195010:intron 50.0%
TTCCATGAGTGACCAGCACT+CGG + chr2_1:11615276-11615295 None:intergenic 50.0%
CTGGTCACTCATGGAAGCAA+AGG - chr2_1:11615280-11615299 Msa0195010:intron 50.0%
GGAAGCAAAGGGAGACATAC+CGG - chr2_1:11615292-11615311 Msa0195010:intron 50.0%
GCAGTGGCCATACAACTGTT+AGG - chr2_1:11615663-11615682 Msa0195010:intron 50.0%
GGGGAGAAGATTGCAAAAGG+AGG - chr2_1:11615711-11615730 Msa0195010:intron 50.0%
GTGAAGTGGAAGCCATGTCA+AGG + chr2_1:11615771-11615790 None:intergenic 50.0%
GATGCCACGTGGTTGAATCT+TGG + chr2_1:11615996-11616015 None:intergenic 50.0%
TTCCATCCATCACCAAGAGC+TGG - chr2_1:11616219-11616238 Msa0195010:intron 50.0%
!! AACCAGCTCTTGGTGATGGA+TGG + chr2_1:11616224-11616243 None:intergenic 50.0%
ATATTACAGGCGGTGGAAGC+AGG - chr2_1:11616274-11616293 Msa0195010:intron 50.0%
AATCCCACAATTTGGCCTCC+TGG - chr2_1:11616833-11616852 Msa0195010:intron 50.0%
! CCTTTTCCTTGTGCTGCACA+AGG + chr2_1:11617061-11617080 None:intergenic 50.0%
CCTTGTGCAGCACAAGGAAA+AGG - chr2_1:11617058-11617077 Msa0195010:intron 50.0%
! AGTCGGTTGTCTTCTGGAAG+CGG + chr2_1:11617250-11617269 None:intergenic 50.0%
GGTACTAGTCGGTTGTCTTC+TGG + chr2_1:11617256-11617275 None:intergenic 50.0%
CCTGGACCTTTGGTACTAGT+CGG + chr2_1:11617267-11617286 None:intergenic 50.0%
! GAGAAGTGACCCTGATGATG+AGG - chr2_1:11618196-11618215 Msa0195010:intron 50.0%
! GAAGTGACCCTGATGATGAG+GGG - chr2_1:11618198-11618217 Msa0195010:intron 50.0%
TGGAAAATCAGGCGATGTCG+TGG - chr2_1:11618309-11618328 Msa0195010:intron 50.0%
CTGCTGCCTGAAGTATATGC+AGG + chr2_1:11618505-11618524 None:intergenic 50.0%
CTCGTGTGCATCTGATATCC+AGG + chr2_1:11618551-11618570 None:intergenic 50.0%
GGATATCAGATGCACACGAG+AGG - chr2_1:11618551-11618570 Msa0195010:intron 50.0%
!! GAGGAACAGGTTTTGGCATC+TGG - chr2_1:11618590-11618609 Msa0195010:intron 50.0%
!! GGAACAGGTTTTGGCATCTG+GGG - chr2_1:11618592-11618611 Msa0195010:intron 50.0%
CGTGATCACTTTCTACCACG+AGG + chr2_1:11618649-11618668 None:intergenic 50.0%
AACAATGGCTGACACGCTAC+AGG - chr2_1:11618868-11618887 Msa0195010:CDS 50.0%
CAAGCCTTACATTGTCGGAG+TGG + chr2_1:11618970-11618989 None:intergenic 50.0%
TTCTTGCAGGAGAAAGAGCC+AGG - chr2_1:11619135-11619154 Msa0195010:intron 50.0%
TCTTGCAGGAGAAAGAGCCA+GGG - chr2_1:11619136-11619155 Msa0195010:intron 50.0%
TACCTGCAATTGGAATGCCC+TGG + chr2_1:11619156-11619175 None:intergenic 50.0%
AAAATCGAGCACCTACTCCC+AGG - chr2_1:11619728-11619747 Msa0195010:intron 50.0%
!! TGGGAAGTGCATTTTGAGGG+TGG - chr2_1:11619857-11619876 Msa0195010:intron 50.0%
GATGGGGTTGAAGGGTCAAG+TGG - chr2_1:11613789-11613808 Msa0195010:intron 55.0%
AGACGATGTGCAGGTGAGTG+AGG - chr2_1:11614383-11614402 Msa0195010:CDS 55.0%
GACGATGTGCAGGTGAGTGA+GGG - chr2_1:11614384-11614403 Msa0195010:CDS 55.0%
TTGACACAGAGACCGAGTGC+TGG - chr2_1:11615261-11615280 Msa0195010:intron 55.0%
GCAAAGGGAGACATACCGGT+AGG - chr2_1:11615296-11615315 Msa0195010:intron 55.0%
TCTTGGCAGATTGCTCGCAG+TGG - chr2_1:11615647-11615666 Msa0195010:intron 55.0%
CAGCAACCAGCTCTTGGTGA+TGG + chr2_1:11616228-11616247 None:intergenic 55.0%
TCACCAAGAGCTGGTTGCTG+TGG - chr2_1:11616228-11616247 Msa0195010:intron 55.0%
ACACCACAGCAACCAGCTCT+TGG + chr2_1:11616234-11616253 None:intergenic 55.0%
CCGACTAGTACCAAAGGTCC+AGG - chr2_1:11617264-11617283 Msa0195010:CDS 55.0%
GGCTAAGCCCCTCATCATCA+GGG + chr2_1:11618208-11618227 None:intergenic 55.0%
! AGCCAGGGCATTCCAATTGC+AGG - chr2_1:11619151-11619170 Msa0195010:intron 55.0%
TGAGGGTGGCGATGAAGACT+TGG - chr2_1:11619871-11619890 Msa0195010:intron 55.0%
!! GACCGAGTGCTGGTCACTCA+TGG - chr2_1:11615271-11615290 Msa0195010:intron 60.0%
CCTTGTGCTGCACAAGGACC+AGG + chr2_1:11617055-11617074 None:intergenic 60.0%
CCTGGTCCTTGTGCAGCACA+AGG - chr2_1:11617052-11617071 Msa0195010:CDS 60.0%
GGGCTAAGCCCCTCATCATC+AGG + chr2_1:11618209-11618228 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 11613095 11620168 11613095 ID=Msa0195010;Name=Msa0195010
chr2_1 mRNA 11613095 11620168 11613095 ID=Msa0195010-mRNA-1;Parent=Msa0195010;Name=Msa0195010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=158|0.93|1|1|0.93|0.87|16|397|692
chr2_1 exon 11613095 11613575 11613095 ID=Msa0195010-mRNA-1:exon:5163;Parent=Msa0195010-mRNA-1
chr2_1 exon 11614227 11614745 11614227 ID=Msa0195010-mRNA-1:exon:5162;Parent=Msa0195010-mRNA-1
chr2_1 exon 11615712 11616047 11615712 ID=Msa0195010-mRNA-1:exon:5161;Parent=Msa0195010-mRNA-1
chr2_1 exon 11616136 11616219 11616136 ID=Msa0195010-mRNA-1:exon:5160;Parent=Msa0195010-mRNA-1
chr2_1 exon 11616599 11616687 11616599 ID=Msa0195010-mRNA-1:exon:5159;Parent=Msa0195010-mRNA-1
chr2_1 exon 11616960 11617074 11616960 ID=Msa0195010-mRNA-1:exon:5158;Parent=Msa0195010-mRNA-1
chr2_1 exon 11617160 11617286 11617160 ID=Msa0195010-mRNA-1:exon:5157;Parent=Msa0195010-mRNA-1
chr2_1 exon 11617468 11617607 11617468 ID=Msa0195010-mRNA-1:exon:5156;Parent=Msa0195010-mRNA-1
chr2_1 exon 11617950 11618011 11617950 ID=Msa0195010-mRNA-1:exon:5155;Parent=Msa0195010-mRNA-1
chr2_1 exon 11618101 11618167 11618101 ID=Msa0195010-mRNA-1:exon:5154;Parent=Msa0195010-mRNA-1
chr2_1 exon 11618625 11618729 11618625 ID=Msa0195010-mRNA-1:exon:5153;Parent=Msa0195010-mRNA-1
chr2_1 exon 11618868 11618945 11618868 ID=Msa0195010-mRNA-1:exon:5152;Parent=Msa0195010-mRNA-1
chr2_1 exon 11619325 11619477 11619325 ID=Msa0195010-mRNA-1:exon:5151;Parent=Msa0195010-mRNA-1
chr2_1 exon 11619564 11619645 11619564 ID=Msa0195010-mRNA-1:exon:5150;Parent=Msa0195010-mRNA-1
chr2_1 exon 11619761 11619847 11619761 ID=Msa0195010-mRNA-1:exon:5149;Parent=Msa0195010-mRNA-1
chr2_1 exon 11620060 11620168 11620060 ID=Msa0195010-mRNA-1:exon:5148;Parent=Msa0195010-mRNA-1
chr2_1 five_prime_UTR 11620060 11620168 11620060 ID=Msa0195010-mRNA-1:five_prime_utr;Parent=Msa0195010-mRNA-1
chr2_1 five_prime_UTR 11619799 11619847 11619799 ID=Msa0195010-mRNA-1:five_prime_utr;Parent=Msa0195010-mRNA-1
chr2_1 CDS 11619761 11619798 11619761 ID=Msa0195010-mRNA-1:cds;Parent=Msa0195010-mRNA-1
chr2_1 CDS 11619564 11619645 11619564 ID=Msa0195010-mRNA-1:cds;Parent=Msa0195010-mRNA-1
chr2_1 CDS 11619325 11619477 11619325 ID=Msa0195010-mRNA-1:cds;Parent=Msa0195010-mRNA-1
chr2_1 CDS 11618868 11618945 11618868 ID=Msa0195010-mRNA-1:cds;Parent=Msa0195010-mRNA-1
chr2_1 CDS 11618625 11618729 11618625 ID=Msa0195010-mRNA-1:cds;Parent=Msa0195010-mRNA-1
chr2_1 CDS 11618101 11618167 11618101 ID=Msa0195010-mRNA-1:cds;Parent=Msa0195010-mRNA-1
chr2_1 CDS 11617950 11618011 11617950 ID=Msa0195010-mRNA-1:cds;Parent=Msa0195010-mRNA-1
chr2_1 CDS 11617468 11617607 11617468 ID=Msa0195010-mRNA-1:cds;Parent=Msa0195010-mRNA-1
chr2_1 CDS 11617160 11617286 11617160 ID=Msa0195010-mRNA-1:cds;Parent=Msa0195010-mRNA-1
chr2_1 CDS 11616960 11617074 11616960 ID=Msa0195010-mRNA-1:cds;Parent=Msa0195010-mRNA-1
chr2_1 CDS 11616599 11616687 11616599 ID=Msa0195010-mRNA-1:cds;Parent=Msa0195010-mRNA-1
chr2_1 CDS 11616136 11616219 11616136 ID=Msa0195010-mRNA-1:cds;Parent=Msa0195010-mRNA-1
chr2_1 CDS 11615712 11616047 11615712 ID=Msa0195010-mRNA-1:cds;Parent=Msa0195010-mRNA-1
chr2_1 CDS 11614227 11614745 11614227 ID=Msa0195010-mRNA-1:cds;Parent=Msa0195010-mRNA-1
chr2_1 CDS 11613492 11613575 11613492 ID=Msa0195010-mRNA-1:cds;Parent=Msa0195010-mRNA-1
chr2_1 three_prime_UTR 11613095 11613491 11613095 ID=Msa0195010-mRNA-1:three_prime_utr;Parent=Msa0195010-mRNA-1
Gene Sequence

>Msa0195010

ATGTTTGGATTCTCTCGTAAACACAAGAAACTTGGCAGAGTGAAGAAGGTTCAACTTTCTGATACCACACAAGGAACTAGAAGTCCTATTAGGCACCCTAAACGAAATGCAAACTCTACTGATGATGGGGTTGAAGGGTCAAGTGGTCATTCTGAGGAAATTGATTGCCAATTTTCTTCTACTGGACCTGAGATAAGTAACTGTGCATCAGGTAGTTCAGAGAATTGGATGGTGTTGTCAATTGCAGGGGATAAGCCTACTCCTAGATCCTATCATGCAGCCTGTGTCATTGAGAATAAGATGATAGTGGTTGGTGGTGAATCTGGAAATGGATTGTTAGACGATGTGCAGGTTCTAAATTTTGACAAATTTTCATGGACCACTGTGTCATCTAAGCTATACTTGTCACCAAGTAGCCTGCCGTTACAGATTCCAGCTTGCAAGGGTCATAGTTTGGTTTCTTGGGGGAAAAAGGCACTCCTCATTGGAGGGAAAACAGACCCAGGAATCGACAAAATATCTGTATGGGCGTTTGACACAGAGACCGAGTGCTGGTCACTCATGGAAGCAAAGGGAGACATACCGATTGCTCGCAGTGGCCATACAACTGTTAGGGCAAACTCTACTTTAATATTGTTTGGGGGAGAAGATTGCAAAAGGAGGAAACTGAATGATCTACATATGTTTGATCTCAAGTCCTTGACATGGCTTCCACTTCACTGCACGGGAACAGCACCTTCTCCAAGATTCAACCACGTGGCATCTCTTTATGATGGTAAAATTCTTTTTATATTTGGAGGAGCAGCAAAATCTAAGACATTGAATGATTTGTATTCACTCGACTTTGAAACGATGGCATGGTCAAGAATAAAGGTGCGTGGTTTCCATCCATCACCAAGAGCTGGTTGCTGTGGTGTTTTATGTGGCACTAAGTGGTATATTACAGGCGGTGGAAGCAGGAAAAAACGACATGGAGAGACTTTGATATATGATATTCTAAAAAATGAATGGTCTGTAGAAATTGCACCGCCTCCTTCTTCTATCACTACCAACAAGGGTTTTAGCCTGGTCCTTGTGCAGCACAAGGAAAAGGAATTTCTTGTTGCATTTGGGGGATCCAAAAAAGAGGCATCAAATCAGGTGGAAGTGTTGAAAACAGAAAAAAATGAATCCGCTTCCAGAAGACAACCGACTAGTACCAAAGGTCCAGGATCTATACTTGAAAAACATTCGTCTTCCACTCAACTTAGAAATGACTCTTCCCAACGTTTTATCGACCCTGTTGCTATACAAAATCTAGCATCTGCAATTAAACGTGGTTCTGAAAGGAAATCTTTGTCGGAATCTCTGTTCGTACAAGATTCTGGCTCTCTCCCTACCAACATCTTCCATAACAGTCAATTTGATCATGATGAAGAATTCAATGTAGATGATAGGATTGACAGGCATTTGGAAGATGAAAGTTCTTTCCCTCAGGCAGCAGATCACAGAACATATCAAAATGACCCTGGATATCAGATGCACACGAGAGGAGCCAAAATCAATATGGAGGAACAGGTTTTGGCATCTGGGGATTCTTTTCGAAAAAATCTAGGTTTTGGAAACCTCGTGGTAGAAAGTGATCACGGGTCATTGCCTGAAAACATAAATTCATCAGGATCACTGTCTACTACTTCAAATATATATAATTATTATGAAACTAAAGTTTCCTCCCTGATAACAAAATTTGGCATTCTGGAAGCACAATTGGCAGCTTCATTAGCAAGCAAAGAAGCTGCTGAGAAAAATCTAGCATCTGCTTTTAAAAACAAACAAGAAATGGATAAAACAATGGCTGACACGCTACAGGAAATTGAATTACTGAGAGAGAAGCTGGTCGGTGCAGAGTTAGCTCAAGAAGAGGCCAACAACCTATCTAACATTGTCCACTCCGACAATGTAAGGCTTGAACATGATGTGGCTTTTCTGAAGGCTGTTTTAGATGATACACAAAAGGTTGAAGTTTTTCATCTCAAACAGAGACTGCAATCAATGGAAAATCGAGCACCTACTCCCAGGAAACCTTTTCATGTGCAATGA
Protein sequence

>Msa0195010

MFGFSRKHKKLGRVKKVQLSDTTQGTRSPIRHPKRNANSTDDGVEGSSGHSEEIDCQFSSTGPEISNCASGSSENWMVLSIAGDKPTPRSYHAACVIENKMIVVGGESGNGLLDDVQVLNFDKFSWTTVSSKLYLSPSSLPLQIPACKGHSLVSWGKKALLIGGKTDPGIDKISVWAFDTETECWSLMEAKGDIPIARSGHTTVRANSTLILFGGEDCKRRKLNDLHMFDLKSLTWLPLHCTGTAPSPRFNHVASLYDGKILFIFGGAAKSKTLNDLYSLDFETMAWSRIKVRGFHPSPRAGCCGVLCGTKWYITGGGSRKKRHGETLIYDILKNEWSVEIAPPPSSITTNKGFSLVLVQHKEKEFLVAFGGSKKEASNQVEVLKTEKNESASRRQPTSTKGPGSILEKHSSSTQLRNDSSQRFIDPVAIQNLASAIKRGSERKSLSESLFVQDSGSLPTNIFHNSQFDHDEEFNVDDRIDRHLEDESSFPQAADHRTYQNDPGYQMHTRGAKINMEEQVLASGDSFRKNLGFGNLVVESDHGSLPENINSSGSLSTTSNIYNYYETKVSSLITKFGILEAQLAASLASKEAAEKNLASAFKNKQEMDKTMADTLQEIELLREKLVGAELAQEEANNLSNIVHSDNVRLEHDVAFLKAVLDDTQKVEVFHLKQRLQSMENRAPTPRKPFHVQ*