AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0336410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336410 MtrunA17_Chr2g0286241 88.624 712 15 4 1 659 1 699 0.0 1268
Msa0336410 MtrunA17_Chr4g0066851 66.255 729 166 13 1 659 1 719 0.0 904
Msa0336410 MtrunA17_Chr7g0272641 36.395 294 184 1 78 371 190 480 2.82e-61 216
Msa0336410 MtrunA17_Chr1g0197401 36.120 299 188 1 76 371 29 327 1.30e-60 211
Msa0336410 MtrunA17_Chr1g0192821 32.685 257 156 8 73 324 26 270 2.15e-28 120
Msa0336410 MtrunA17_Chr1g0192821 27.016 248 170 6 78 323 81 319 4.81e-21 97.8
Msa0336410 MtrunA17_Chr1g0192821 26.570 207 98 4 171 324 15 220 3.79e-14 75.9
Msa0336410 MtrunA17_Chr1g0192821 32.692 156 94 4 218 370 11 158 8.14e-14 74.7
Msa0336410 MtrunA17_Chr4g0074871 31.364 220 131 7 76 286 279 487 1.34e-21 100
Msa0336410 MtrunA17_Chr4g0074871 27.891 147 105 1 181 327 333 478 2.01e-12 70.9
Msa0336410 MtrunA17_Chr4g0061581 30.631 222 136 6 78 290 81 293 3.86e-20 94.7
Msa0336410 MtrunA17_Chr4g0061581 32.143 168 103 4 175 332 16 182 1.34e-16 83.6
Msa0336410 MtrunA17_Chr4g0061581 27.801 241 157 7 71 303 21 252 3.06e-16 82.4
Msa0336410 MtrunA17_Chr4g0061581 26.633 199 128 4 78 266 131 321 1.13e-14 77.4
Msa0336410 MtrunA17_Chr2g0311721 28.814 177 107 5 136 302 24 191 1.02e-16 82.0
Msa0336410 MtrunA17_Chr2g0311721 27.919 197 135 5 171 365 8 199 4.34e-14 73.9
Msa0336410 MtrunA17_Chr2g0311721 25.328 229 156 7 78 303 24 240 1.91e-12 68.9
Msa0336410 MtrunA17_Chr1g0198221 26.259 278 173 10 78 332 23 291 4.21e-16 81.6
Msa0336410 MtrunA17_Chr1g0198221 26.829 287 177 8 71 338 73 345 2.01e-14 76.3
Msa0336410 MtrunA17_Chr1g0198221 31.613 155 96 5 178 324 14 166 8.11e-14 74.3
Msa0336410 MtrunA17_Chr1g0207821 28.980 245 138 10 84 303 81 314 5.93e-16 81.6
Msa0336410 MtrunA17_Chr1g0196221 23.875 289 184 8 119 372 7 294 4.95e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336410 AT5G18590.2 54.932 730 235 13 1 658 1 708 0.0 729
Msa0336410 AT5G18590.1 54.932 730 235 13 1 658 1 708 0.0 729
Msa0336410 AT3G05420.2 34.969 326 209 2 78 401 188 512 1.15e-65 229
Msa0336410 AT3G05420.1 34.969 326 209 2 78 401 187 511 1.22e-65 229
Msa0336410 AT5G27630.2 34.146 328 214 1 76 401 186 513 4.97e-64 222
Msa0336410 AT5G27630.4 36.242 298 188 1 76 371 186 483 1.07e-63 223
Msa0336410 AT5G27630.1 36.242 298 188 1 76 371 186 483 1.11e-63 223
Msa0336410 AT5G27630.3 36.242 298 188 1 76 371 186 483 1.29e-63 223
Msa0336410 AT5G04420.2 34.242 330 205 2 69 389 29 355 1.63e-57 203
Msa0336410 AT5G04420.1 34.242 330 205 2 69 389 29 355 1.63e-57 203
Msa0336410 AT5G04420.3 34.242 330 205 2 69 389 29 355 1.63e-57 203
Msa0336410 AT1G18610.1 31.532 222 134 6 78 290 81 293 2.66e-23 104
Msa0336410 AT1G18610.1 26.101 318 208 12 69 372 19 323 7.25e-19 90.9
Msa0336410 AT1G18610.2 31.532 222 134 6 78 290 81 293 2.66e-23 104
Msa0336410 AT1G18610.2 26.101 318 208 12 69 372 19 323 7.25e-19 90.9
Msa0336410 AT1G74150.1 26.182 275 184 6 78 342 78 343 9.27e-21 97.1
Msa0336410 AT1G74150.1 33.171 205 123 6 161 358 52 249 1.46e-17 87.0
Msa0336410 AT1G74150.2 26.182 275 184 6 78 342 78 343 9.62e-21 97.1
Msa0336410 AT1G74150.2 33.171 205 123 6 161 358 52 249 1.48e-17 87.0
Msa0336410 AT1G74150.4 25.862 290 194 7 63 342 49 327 1.18e-20 96.7
Msa0336410 AT1G74150.4 32.673 202 122 6 164 358 39 233 3.60e-16 82.4
Msa0336410 AT1G74150.3 26.894 264 172 7 63 316 65 317 1.32e-20 96.7
Msa0336410 AT1G74150.3 33.171 205 123 6 161 358 52 249 1.44e-17 87.0
Msa0336410 AT3G07720.1 28.571 196 123 5 136 323 26 212 2.22e-17 84.3
Msa0336410 AT3G07720.1 24.627 268 192 7 171 436 10 269 7.98e-14 73.6
Msa0336410 AT3G07720.1 24.779 226 161 4 78 303 26 242 7.53e-11 64.7
Msa0336410 AT2G36360.2 31.928 166 99 5 178 331 14 177 8.50e-17 84.3
Msa0336410 AT2G36360.2 26.523 279 169 11 78 331 23 290 2.17e-15 79.7
Msa0336410 AT2G36360.2 29.478 268 160 9 61 312 64 318 8.50e-14 74.7
Msa0336410 AT2G36360.1 31.928 166 99 5 178 331 14 177 8.50e-17 84.3
Msa0336410 AT2G36360.1 26.523 279 169 11 78 331 23 290 2.17e-15 79.7
Msa0336410 AT2G36360.1 29.478 268 160 9 61 312 64 318 8.50e-14 74.7
Msa0336410 AT2G36360.3 31.928 166 99 5 178 331 14 177 1.09e-16 84.0
Msa0336410 AT2G36360.3 25.281 356 223 13 78 408 23 360 2.15e-15 79.7
Msa0336410 AT2G36360.3 29.478 268 160 9 61 312 64 318 1.06e-13 74.7
Msa0336410 AT2G36360.4 31.928 166 99 5 178 331 14 177 1.53e-16 83.6
Msa0336410 AT2G36360.4 26.259 278 171 10 78 331 23 290 3.53e-15 79.3
Msa0336410 AT2G36360.4 29.478 268 160 9 61 312 64 318 1.20e-13 74.3
Msa0336410 AT4G04670.1 27.706 231 151 6 78 305 328 545 2.03e-15 80.9
Msa0336410 AT4G04670.1 27.358 212 145 3 119 323 304 513 2.17e-13 74.3
Msa0336410 AT4G04670.1 25.850 147 108 1 181 327 322 467 2.41e-11 67.8
Msa0336410 AT1G74150.6 28.814 177 120 3 171 342 2 177 2.60e-15 79.0
Msa0336410 AT1G74150.6 28.571 154 101 3 136 285 18 166 4.27e-12 68.9
Msa0336410 AT1G74150.5 28.814 177 120 3 171 342 2 177 2.60e-15 79.0
Msa0336410 AT1G74150.5 28.571 154 101 3 136 285 18 166 4.27e-12 68.9
Msa0336410 AT5G50310.1 28.906 256 147 10 84 315 81 325 4.53e-15 79.3
Msa0336410 AT2G36360.5 30.857 175 98 6 178 331 14 186 1.89e-14 77.0
Msa0336410 AT2G36360.5 24.932 365 222 14 78 408 23 369 1.96e-13 73.6
Msa0336410 AT2G36360.5 26.866 268 176 6 61 312 64 327 1.57e-11 67.8
Msa0336410 AT3G16410.1 27.273 242 166 5 113 348 242 479 4.72e-14 75.9
Msa0336410 AT2G18915.1 31.890 254 134 14 76 303 337 577 7.46e-14 75.5
Msa0336410 AT2G18915.2 31.890 254 134 14 76 303 347 587 8.13e-14 75.1
Msa0336410 AT1G03445.1 27.749 191 111 6 131 295 30 219 1.64e-13 74.7
Msa0336410 AT1G03445.1 30.588 170 91 5 179 330 26 186 1.06e-11 68.6
Msa0336410 AT1G03445.2 27.749 191 111 6 131 295 30 219 1.94e-13 74.3
Msa0336410 AT1G03445.2 30.588 170 91 5 179 330 26 186 1.21e-11 68.6
Msa0336410 AT3G16400.2 29.050 179 125 2 171 348 153 330 1.27e-12 70.9
Msa0336410 AT3G16400.1 29.050 179 125 2 171 348 153 330 1.27e-12 70.9
Msa0336410 AT2G33070.1 26.141 241 170 4 113 348 94 331 2.38e-12 70.1
Msa0336410 AT2G33070.2 26.141 241 170 4 113 348 94 331 2.38e-12 70.1
Msa0336410 AT5G48180.1 25.877 228 155 6 78 303 24 239 5.87e-12 67.8
Msa0336410 AT5G48180.1 27.041 196 125 6 136 323 24 209 1.12e-11 67.0
Msa0336410 AT5G48180.1 27.948 229 132 8 171 380 8 222 3.14e-11 65.9
Msa0336410 AT2G33070.3 28.249 177 125 2 173 348 158 333 1.25e-11 67.8

Find 154 sgRNAs with CRISPR-Local

Find 473 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCTACTTTAATATTATT+TGG 0.042815 2_4:+55811419 Msa0336410:CDS
GAGCTTTGTGTCATCATTTC+TGG 0.119377 2_4:-55816096 None:intergenic
CTGTTCCTCCATATTGATTT+TGG 0.161780 2_4:-55814309 None:intergenic
TCCTCCCTGATAACAAAATT+TGG 0.178023 2_4:+55814482 Msa0336410:CDS
CTGTAATTGTAATTGAATTA+TGG 0.197803 2_4:+55816327 Msa0336410:three_prime_UTR
AGGAATTTCTTGTTGCATTT+GGG 0.232869 2_4:+55812808 Msa0336410:CDS
TATTACTATTAGGACATATA+TGG 0.234014 2_4:+55816120 Msa0336410:three_prime_UTR
ACTCTACTTTAATATTATTT+GGG 0.246774 2_4:+55811420 Msa0336410:CDS
CATTAACACTGCATCTTTAG+AGG 0.255692 2_4:-55816181 None:intergenic
GATAACAAAATTTGGCATTC+TGG 0.261465 2_4:+55814490 Msa0336410:CDS
AAGGAATTTCTTGTTGCATT+TGG 0.266568 2_4:+55812807 Msa0336410:CDS
TAGAGTTTGCATTTCGTTTA+GGG 0.271535 2_4:-55808940 None:intergenic
GTAGAGTTTGCATTTCGTTT+AGG 0.274524 2_4:-55808941 None:intergenic
CAATATGGAGGAACAGGTTT+TGG 0.276025 2_4:+55814316 Msa0336410:CDS
GGTACTAGTCGGTTGTCTTC+TGG 0.281071 2_4:-55812983 None:intergenic
TAATTTGACACCAGGTTTCT+TGG 0.311604 2_4:+55810811 Msa0336410:intron
AATTTGACACCAGGTTTCTT+GGG 0.325115 2_4:+55810812 Msa0336410:intron
TCTCTGTTCGTACAAGATTC+TGG 0.339134 2_4:+55813150 Msa0336410:CDS
ACAAAGCTCATATTACTATT+AGG 0.343163 2_4:+55816110 Msa0336410:three_prime_UTR
AGAAGAAGAATAAAGATGTT+TGG 0.345399 2_4:+55808715 Msa0336410:exon
ATGCAGTGTTAATGCATTAC+TGG 0.349305 2_4:+55816190 Msa0336410:three_prime_UTR
TTTCGTTTAGGGTGCCTAAT+AGG 0.354777 2_4:-55808929 None:intergenic
ATAGTGGTTGGTGGTGAATC+TGG 0.354968 2_4:+55809615 Msa0336410:CDS
CAGGTCCAGTAGAAGAAAAT+TGG 0.371719 2_4:-55809098 None:intergenic
TGATAGGATTGACAGGCATT+TGG 0.374528 2_4:+55813236 Msa0336410:CDS
AAATAAAATGTTCACCTTGT+TGG 0.379564 2_4:-55812387 None:intergenic
TCTAAAATCTCATTTCTGTA+TGG 0.380222 2_4:-55816252 None:intergenic
AGCTTGCAAGGGTCATAGTT+TGG 0.382174 2_4:+55809884 Msa0336410:CDS
CCAGGAATCGACAAAATATC+TGG 0.383294 2_4:+55810870 Msa0336410:CDS
CTCGTGTGCATCTGATATCC+AGG 0.391162 2_4:-55814281 None:intergenic
TTGCACATGAAAAGGTTTCC+TGG 0.391252 2_4:-55816029 None:intergenic
GGCACTAAGTGGTATATTAC+AGG 0.393302 2_4:+55811991 Msa0336410:CDS
CAAAATCAATATGGAGGAAC+AGG 0.395128 2_4:+55814310 Msa0336410:CDS
CGGAGTGGACAATGTTAGAT+AGG 0.395718 2_4:-55814685 None:intergenic
GCAGTGGCCATACAACTGTT+AGG 0.396047 2_4:+55811393 Msa0336410:CDS
ATCTGTAACGGCAGGCTACT+TGG 0.402706 2_4:-55809858 None:intergenic
AAGTATAGATCCTGGACCTT+TGG 0.407645 2_4:-55813004 None:intergenic
CATCAGGTAGTTCAGAGAAT+TGG 0.408902 2_4:+55809136 Msa0336410:CDS
TGAAAACAAAACCACACAAA+AGG 0.413499 2_4:-55808624 None:intergenic
TGGCATTCTGGAAGCACAAT+TGG 0.415991 2_4:+55814502 Msa0336410:CDS
AAGAATTCAATGTAGATGAT+AGG 0.423853 2_4:+55813220 Msa0336410:CDS
ATGTTCAAGCCTTACATTGT+CGG 0.432027 2_4:-55814705 None:intergenic
TCATATTTGATCTGAACAAT+TGG 0.432756 2_4:-55816218 None:intergenic
AAGGAACTAGAAGTCCTATT+AGG 0.436143 2_4:+55808915 Msa0336410:CDS
ACACCTCATTGCACATGAAA+AGG 0.437302 2_4:-55816037 None:intergenic
GATGCCACGTGGTTGAATCT+TGG 0.440918 2_4:-55811723 None:intergenic
GAGAGGAGCCAAAATCAATA+TGG 0.441578 2_4:+55814301 Msa0336410:CDS
GAGATAAGTAACTGTGCATC+AGG 0.444693 2_4:+55809120 Msa0336410:CDS
CCTTGTGCTGCACAAGGACC+AGG 0.446536 2_4:-55812782 None:intergenic
GATGGCATGGTCAAGAATAA+AGG 0.449810 2_4:+55811918 Msa0336410:intron
CCTGAAAACATAAATTCATC+AGG 0.456851 2_4:+55814410 Msa0336410:CDS
CAAACAGAGACTGCAATCAA+TGG 0.463940 2_4:+55815988 Msa0336410:CDS
TTCTGAAAGGAAATCTTTGT+CGG 0.471559 2_4:+55813125 Msa0336410:CDS
ATATTACAGGCGGTGGAAGC+AGG 0.479398 2_4:+55812004 Msa0336410:CDS
GTTACAGATTCCAGCTTGCA+AGG 0.482796 2_4:+55809872 Msa0336410:CDS
AGTTTGCCCTAACAGTTGTA+TGG 0.485004 2_4:-55811400 None:intergenic
CCTTGTGCAGCACAAGGAAA+AGG 0.486212 2_4:+55812788 Msa0336410:CDS
GTGCAATGAGGTGTTCTTGA+TGG 0.487352 2_4:+55816046 Msa0336410:exon
TGCACATGAAAAGGTTTCCT+GGG 0.490413 2_4:-55816028 None:intergenic
ATTACTATTAGGACATATAT+GGG 0.496650 2_4:+55816121 Msa0336410:three_prime_UTR
GACAATGTTAGATAGGTTGT+TGG 0.501250 2_4:-55814678 None:intergenic
AACAGGGTCGATAAAACGTT+GGG 0.503162 2_4:-55813067 None:intergenic
AGTCGGTTGTCTTCTGGAAG+CGG 0.503270 2_4:-55812977 None:intergenic
TGAATTACTGAGAGAGAAGC+TGG 0.504426 2_4:+55814628 Msa0336410:CDS
AACACTTACGTGCAGTGAAG+TGG 0.505581 2_4:-55811512 None:intergenic
GACCGAGTGCTGGTCACTCA+TGG 0.511048 2_4:+55811001 Msa0336410:CDS
GAAAACAAAACCACACAAAA+GGG 0.512761 2_4:-55808623 None:intergenic
CATGATCAAATTGACTGTCA+TGG 0.516143 2_4:-55813194 None:intergenic
AACAATGGCTGACACGCTAC+AGG 0.516177 2_4:+55814601 Msa0336410:CDS
AAACTATGACCCTTGCAAGC+TGG 0.516811 2_4:-55809882 None:intergenic
AGATGAAAGTTCTTTCCCTC+AGG 0.517228 2_4:+55813260 Msa0336410:CDS
TTACAATTACAGTTAATGAC+TGG 0.517332 2_4:-55816316 None:intergenic
TTCCATCCATCACCAAGAGC+TGG 0.517381 2_4:+55811949 Msa0336410:CDS
GTATTCACTCGACTTTGAAA+CGG 0.519278 2_4:+55811812 Msa0336410:CDS
CTCTACTTTAATATTATTTG+GGG 0.519326 2_4:+55811421 Msa0336410:CDS
GTTGGTGGTGAATCTGGAAA+TGG 0.520081 2_4:+55809621 Msa0336410:CDS
TGAGGGTGGCGATGAAGACT+TGG 0.522080 2_4:+55816154 Msa0336410:three_prime_UTR
CAGTGGCCATACAACTGTTA+GGG 0.523904 2_4:+55811394 Msa0336410:CDS
TCTCGTAAACACAAGAAACT+TGG 0.524489 2_4:+55808742 Msa0336410:CDS
GGAAGCAAAGGGAGACATAC+CGG 0.526021 2_4:+55811022 Msa0336410:CDS
ATGTAGATGATAGGATTGAC+AGG 0.527338 2_4:+55813229 Msa0336410:CDS
ACACCACAGCAACCAGCTCT+TGG 0.531616 2_4:-55811961 None:intergenic
TTCCATGAGTGACCAGCACT+CGG 0.537533 2_4:-55811003 None:intergenic
GGAATTTCTTGTTGCATTTG+GGG 0.539505 2_4:+55812809 Msa0336410:CDS
ACATTTCAGATTCTTTGAAA+CGG 0.539772 2_4:+55816275 Msa0336410:three_prime_UTR
GATGCACAGTTACTTATCTC+AGG 0.542667 2_4:-55809117 None:intergenic
CTGGTCACTCATGGAAGCAA+AGG 0.547648 2_4:+55811010 Msa0336410:CDS
CAGCAACCAGCTCTTGGTGA+TGG 0.549757 2_4:-55811955 None:intergenic
TTTAGGATGATGGGGTTGAA+GGG 0.550340 2_4:+55809046 Msa0336410:intron
AACCAGCTCTTGGTGATGGA+TGG 0.554218 2_4:-55811951 None:intergenic
CACGTGGCATCTCTTTATGA+TGG 0.554865 2_4:+55811735 Msa0336410:CDS
AAGTGGTATATTACAGGCGG+TGG 0.557210 2_4:+55811997 Msa0336410:CDS
ATTTGACACCAGGTTTCTTG+GGG 0.558080 2_4:+55810813 Msa0336410:intron
GGGGAGAAGATTGCAAAAGG+AGG 0.563418 2_4:+55811441 Msa0336410:CDS
TTTCTTATATCCAGATGGCA+TGG 0.566220 2_4:+55811905 Msa0336410:intron
CAATTAAACGTGGTTCTGAA+AGG 0.566360 2_4:+55813112 Msa0336410:CDS
AGAGTCATTTCTAAGTTGAG+TGG 0.578930 2_4:-55813043 None:intergenic
CCGACTAGTACCAAAGGTCC+AGG 0.580716 2_4:+55812994 Msa0336410:CDS
TGGATTGTTAGACGATGTGC+AGG 0.584889 2_4:+55809641 Msa0336410:CDS
CCTGGACCTTTGGTACTAGT+CGG 0.585499 2_4:-55812994 None:intergenic
CTCGTGGTAGAAAGTGATCA+CGG 0.585915 2_4:+55814380 Msa0336410:CDS
CCTGGTCCTTGTGCAGCACA+AGG 0.587673 2_4:+55812782 Msa0336410:CDS
AAAATCGAGCACCTACTCCC+AGG 0.588115 2_4:+55816011 Msa0336410:CDS
GTAAACACAAGAAACTTGGC+AGG 0.590232 2_4:+55808746 Msa0336410:CDS
GATGGGGTTGAAGGGTCAAG+TGG 0.591764 2_4:+55809054 Msa0336410:CDS
TTGTTGGTAGTGATAGAAGA+AGG 0.594047 2_4:-55812371 None:intergenic
TGGTCACTCATGGAAGCAAA+GGG 0.594851 2_4:+55811011 Msa0336410:CDS
AAGCTGGAATCTGTAACGGC+AGG 0.596939 2_4:-55809866 None:intergenic
TCACCAAGAGCTGGTTGCTG+TGG 0.597396 2_4:+55811958 Msa0336410:CDS
CTGTCATGGAAGATGTTGGT+AGG 0.597877 2_4:-55813180 None:intergenic
TTGATCTCAAGTCCTTGACA+TGG 0.599083 2_4:+55811486 Msa0336410:CDS
AGGACTTCTAGTTCCTTGTG+TGG 0.600271 2_4:-55808909 None:intergenic
CAACAGGGTCGATAAAACGT+TGG 0.602316 2_4:-55813068 None:intergenic
CAACTTTCTGATACCACACA+AGG 0.603801 2_4:+55808896 Msa0336410:CDS
CATCTTATTCTCAATGACAC+AGG 0.607094 2_4:-55809592 None:intergenic
TTACAGATTCCAGCTTGCAA+GGG 0.607096 2_4:+55809873 Msa0336410:CDS
GTGAAGTGGAAGCCATGTCA+AGG 0.607359 2_4:-55811498 None:intergenic
TGCAGAGTTAGCTCAAGAAG+AGG 0.607697 2_4:+55814655 Msa0336410:CDS
TTGCAAGCTGGAATCTGTAA+CGG 0.609492 2_4:-55809870 None:intergenic
CATTGAGAATAAGATGATAG+TGG 0.617742 2_4:+55809599 Msa0336410:CDS
ACAACAAATCAAAATGACCC+TGG 0.618312 2_4:+55814263 Msa0336410:CDS
TTGACACAGAGACCGAGTGC+TGG 0.619406 2_4:+55810991 Msa0336410:CDS
TGAAAAGGTTTCCTGGGAGT+AGG 0.622222 2_4:-55816022 None:intergenic
TCGTGTGCATCTGATATCCA+GGG 0.622732 2_4:-55814280 None:intergenic
GAATTTCTTGTTGCATTTGG+GGG 0.629851 2_4:+55812810 Msa0336410:CDS
GAGAATAAGATGATAGTGGT+TGG 0.633657 2_4:+55809603 Msa0336410:CDS
TCTTGGCAGATTGCTCGCAG+TGG 0.636047 2_4:+55811377 Msa0336410:intron
AATAAGATGATAGTGGTTGG+TGG 0.636096 2_4:+55809606 Msa0336410:CDS
AGGGTCAAGTGGTCATTCTG+AGG 0.636554 2_4:+55809065 Msa0336410:CDS
CTAGCATCTGCAATTAAACG+TGG 0.637684 2_4:+55813102 Msa0336410:CDS
TCGTGGTAGAAAGTGATCAC+GGG 0.638127 2_4:+55814381 Msa0336410:CDS
ACAAGAAATGGATAAAACAA+TGG 0.639188 2_4:+55814586 Msa0336410:CDS
AAAAGGCACTCCTCATTGGA+GGG 0.642366 2_4:+55810838 Msa0336410:CDS
TTGACTGTCATGGAAGATGT+TGG 0.644032 2_4:-55813184 None:intergenic
ATTGGAGGGAAAACAGACCC+AGG 0.645160 2_4:+55810852 Msa0336410:CDS
CGTGATCACTTTCTACCACG+AGG 0.645412 2_4:-55814379 None:intergenic
TCTACTTTAATATTATTTGG+GGG 0.647440 2_4:+55811422 Msa0336410:CDS
TGTCATGGAAGATGTTGGTA+GGG 0.647629 2_4:-55813179 None:intergenic
AGGAGCCAAAATCAATATGG+AGG 0.652394 2_4:+55814304 Msa0336410:CDS
TTTGACACCAGGTTTCTTGG+GGG 0.653476 2_4:+55810814 Msa0336410:intron
ACGTGGTTGAATCTTGGAGA+AGG 0.655883 2_4:-55811717 None:intergenic
TTCTTCTATCACTACCAACA+AGG 0.656018 2_4:+55812373 Msa0336410:CDS
AGGTAGTTCAGAGAATTGGA+TGG 0.659831 2_4:+55809140 Msa0336410:CDS
GGATATCAGATGCACACGAG+AGG 0.670333 2_4:+55814284 Msa0336410:CDS
AGACAACCGACTAGTACCAA+AGG 0.673944 2_4:+55812988 Msa0336410:CDS
CAAGCCTTACATTGTCGGAG+TGG 0.682789 2_4:-55814700 None:intergenic
TGGTCAAGAATAAAGGTGCG+TGG 0.685381 2_4:+55811925 Msa0336410:CDS
TTACTGAGAGAGAAGCTGGT+CGG 0.685529 2_4:+55814632 Msa0336410:CDS
TTGGTAGTGATAGAAGAAGG+AGG 0.691034 2_4:-55812368 None:intergenic
ACTAAGTGGTATATTACAGG+CGG 0.714772 2_4:+55811994 Msa0336410:CDS
CATCATAAAGAGATGCCACG+TGG 0.722412 2_4:-55811734 None:intergenic
TTCTCCAAGATTCAACCACG+TGG 0.739104 2_4:+55811719 Msa0336410:CDS
GTAGTGATAGAAGAAGGAGG+CGG 0.739186 2_4:-55812365 None:intergenic
GTATAGCTTAGATGACACAG+TGG 0.805097 2_4:-55809829 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATATTGACTAATTATT+TGG + chr2_4:55809735-55809754 Msa0336410:intron 10.0%
!!! ATTTTTCTATACTTAAAAAT+CGG + chr2_4:55810575-55810594 Msa0336410:intron 10.0%
!! AGAAAAATAAAATTATTACA+TGG + chr2_4:55811284-55811303 Msa0336410:intron 10.0%
!!! ATTTTTTTTTTGTTTAGAAA+AGG + chr2_4:55811547-55811566 Msa0336410:intron 10.0%
!!! TATAAAATAATTTTAGAAGT+TGG + chr2_4:55813549-55813568 Msa0336410:intron 10.0%
!! AATGCTATTAAAATTAAATA+AGG - chr2_4:55814846-55814865 None:intergenic 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG + chr2_4:55815169-55815188 Msa0336410:intron 10.0%
!!! TATAAGTAAATTTTTTTTGT+AGG + chr2_4:55815229-55815248 Msa0336410:intron 10.0%
!!! ATAAGTAAATTTTTTTTGTA+GGG + chr2_4:55815230-55815249 Msa0336410:intron 10.0%
!! TTTCAATTTAATTACAAAAA+TGG + chr2_4:55815538-55815557 Msa0336410:intron 10.0%
!! ATATAAAACATAAAATTACA+TGG - chr2_4:55815757-55815776 None:intergenic 10.0%
!!! TAAATTTTGACAAATTTTCA+TGG + chr2_4:55809805-55809824 Msa0336410:CDS 15.0%
!!! AAATTTATCTTCGAATTTTA+AGG - chr2_4:55810505-55810524 None:intergenic 15.0%
!!! TTTTTTGCTTTTTTTTAGTA+TGG + chr2_4:55810964-55810983 Msa0336410:intron 15.0%
!!! TTTTTGCTTTTTTTTAGTAT+GGG + chr2_4:55810965-55810984 Msa0336410:intron 15.0%
!!! ATTTTCACAATCTAAATATT+AGG + chr2_4:55811109-55811128 Msa0336410:intron 15.0%
!! AACTCTACTTTAATATTATT+TGG + chr2_4:55811419-55811438 Msa0336410:CDS 15.0%
!! ACTCTACTTTAATATTATTT+GGG + chr2_4:55811420-55811439 Msa0336410:CDS 15.0%
!!! GGTAAAATTCTTTTTATATT+TGG + chr2_4:55811756-55811775 Msa0336410:CDS 15.0%
!!! AAAATTCTTTTTATATTTGG+AGG + chr2_4:55811759-55811778 Msa0336410:CDS 15.0%
!!! TGAATATTTAATTTGCATAT+TGG - chr2_4:55811885-55811904 None:intergenic 15.0%
!!! ATGATATTCTAAAAAATGAA+TGG + chr2_4:55812327-55812346 Msa0336410:CDS 15.0%
!!! TTTTAACCTTTTATTTTTCT+TGG + chr2_4:55812914-55812933 Msa0336410:intron 15.0%
!! AATAGAAAAAAATTGATTGT+AGG - chr2_4:55813484-55813503 None:intergenic 15.0%
!! AACATTCTATAATGAAAAAT+TGG + chr2_4:55813890-55813909 Msa0336410:intron 15.0%
!! TTCAAATTTGTATATATTGT+TGG + chr2_4:55814022-55814041 Msa0336410:intron 15.0%
!!! TTTTAAAAACAAACAAGAAA+TGG + chr2_4:55814574-55814593 Msa0336410:CDS 15.0%
!!! TATATATGACATTTCATTTT+AGG + chr2_4:55814771-55814790 Msa0336410:intron 15.0%
!!! ATATATGACATTTCATTTTA+GGG + chr2_4:55814772-55814791 Msa0336410:intron 15.0%
!! AAGCATAAATTAAACAAATT+TGG - chr2_4:55814918-55814937 None:intergenic 15.0%
!!! TTTTTCAACAATTTTTTTAC+AGG + chr2_4:55814949-55814968 Msa0336410:intron 15.0%
!!! AATTTTTGCGATATTTTTTT+CGG - chr2_4:55815003-55815022 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG - chr2_4:55815038-55815057 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG + chr2_4:55815197-55815216 Msa0336410:intron 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG + chr2_4:55815198-55815217 Msa0336410:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr2_4:55815259-55815278 Msa0336410:intron 15.0%
!! AAATTATACCATAAAATGAA+GGG - chr2_4:55815333-55815352 None:intergenic 15.0%
!!! TTTCTATATTTTTGTGTATT+TGG + chr2_4:55815484-55815503 Msa0336410:intron 15.0%
!! GAAAATATAACAAAAAATAC+AGG + chr2_4:55815644-55815663 Msa0336410:intron 15.0%
!!! TATAAAAAATGCAAATTTTG+TGG - chr2_4:55815873-55815892 None:intergenic 15.0%
!!! AGTACAATTCTTTTTCTTTT+TGG + chr2_4:55808778-55808797 Msa0336410:intron 20.0%
!!! TTAAGTTGTTTATCCAAATA+TGG + chr2_4:55809477-55809496 Msa0336410:intron 20.0%
!! TTTCAAAATGACCTTAATAA+TGG + chr2_4:55809965-55809984 Msa0336410:intron 20.0%
!! TGCTCTTAAAATATACTTAT+TGG - chr2_4:55810137-55810156 None:intergenic 20.0%
!! TAAGAGATTTACAAGAAAAA+AGG + chr2_4:55810539-55810558 Msa0336410:intron 20.0%
!!! TTTAAGTGCATATCTTTTAA+TGG + chr2_4:55810723-55810742 Msa0336410:intron 20.0%
!! GAAATTAAATTATGACATGT+TGG - chr2_4:55811314-55811333 None:intergenic 20.0%
!! TCTTTCATTTAAATCTCTAT+AGG + chr2_4:55811332-55811351 Msa0336410:intron 20.0%
!! CTCTACTTTAATATTATTTG+GGG + chr2_4:55811421-55811440 Msa0336410:CDS 20.0%
!! TCTACTTTAATATTATTTGG+GGG + chr2_4:55811422-55811441 Msa0336410:CDS 20.0%
!! TGAAAGATTATATTACTTCA+GGG + chr2_4:55811686-55811705 Msa0336410:intron 20.0%
!! TTCATCACAATATAACTAAA+CGG - chr2_4:55811850-55811869 None:intergenic 20.0%
!!! AATAAGCATAAAAGTTTTCA+AGG + chr2_4:55812135-55812154 Msa0336410:intron 20.0%
!!! ATTTTAAGTTCAAATGTCAT+TGG + chr2_4:55812190-55812209 Msa0336410:intron 20.0%
!! AATTTCATATTTGAAAACTG+AGG - chr2_4:55812661-55812680 None:intergenic 20.0%
!! AAACCTTGATATATATGAAA+TGG - chr2_4:55813388-55813407 None:intergenic 20.0%
!! GAAAATAACATATGACATAT+AGG - chr2_4:55813870-55813889 None:intergenic 20.0%
!! GAATGATTGGAATAAAATAA+GGG - chr2_4:55814133-55814152 None:intergenic 20.0%
!! AAAGTATGTTTATTGAATCA+TGG - chr2_4:55814155-55814174 None:intergenic 20.0%
!!! TTTAGGGTTAATTATGTTTT+TGG + chr2_4:55814788-55814807 Msa0336410:intron 20.0%
!!! AACAAAATTTATTTTAGCAG+GGG + chr2_4:55815199-55815218 Msa0336410:intron 20.0%
!!! ATAATTAACCCTTCATTTTA+TGG + chr2_4:55815322-55815341 Msa0336410:intron 20.0%
!! CAAATTATACCATAAAATGA+AGG - chr2_4:55815334-55815353 None:intergenic 20.0%
!!! ATTCAATATTAGCATTTTAC+AGG - chr2_4:55815361-55815380 None:intergenic 20.0%
!!! TAACAAAAAATACAGGTTTT+TGG + chr2_4:55815651-55815670 Msa0336410:intron 20.0%
!! TTCGTAATTAAATATGTAGA+AGG + chr2_4:55815679-55815698 Msa0336410:intron 20.0%
!!! TTTTTTTTTCTTCAGGATTT+TGG + chr2_4:55815727-55815746 Msa0336410:intron 20.0%
!! TATGATCAATTATGTTGTTA+AGG + chr2_4:55815774-55815793 Msa0336410:intron 20.0%
!! ATGATCAATTATGTTGTTAA+GGG + chr2_4:55815775-55815794 Msa0336410:intron 20.0%
!! TATTACTATTAGGACATATA+TGG + chr2_4:55816120-55816139 Msa0336410:three_prime_UTR 20.0%
!! ATTACTATTAGGACATATAT+GGG + chr2_4:55816121-55816140 Msa0336410:three_prime_UTR 20.0%
!! CTGTAATTGTAATTGAATTA+TGG + chr2_4:55816327-55816346 Msa0336410:three_prime_UTR 20.0%
! AGAAGAAGAATAAAGATGTT+TGG + chr2_4:55808715-55808734 Msa0336410:exon 25.0%
!! TGTGGTTATTACTAAGTTTT+TGG + chr2_4:55809018-55809037 Msa0336410:intron 25.0%
! TAATTACATACATAGGATCT+AGG - chr2_4:55809195-55809214 None:intergenic 25.0%
! AGATCCTATGTATGTAATTA+TGG + chr2_4:55809195-55809214 Msa0336410:intron 25.0%
! GATCCTATGTATGTAATTAT+GGG + chr2_4:55809196-55809215 Msa0336410:intron 25.0%
! ATTCCCATAATTACATACAT+AGG - chr2_4:55809202-55809221 None:intergenic 25.0%
! CAACATACTATTCATTTCAT+TGG + chr2_4:55809775-55809794 Msa0336410:intron 25.0%
! AGTTATGAATGAAATTCGAT+TGG - chr2_4:55810102-55810121 None:intergenic 25.0%
! TTTATTTGATATGGAGAGAA+AGG + chr2_4:55810216-55810235 Msa0336410:intron 25.0%
! ATTATATGAAGTGCATACAA+AGG - chr2_4:55810378-55810397 None:intergenic 25.0%
!!! ATTATTTCTCCTCTTTTTTC+TGG - chr2_4:55810448-55810467 None:intergenic 25.0%
! CAAGAAAAAAGGAAAAGAAA+AGG + chr2_4:55810550-55810569 Msa0336410:intron 25.0%
! GTAAGTATAACAACATAGAA+TGG - chr2_4:55810699-55810718 None:intergenic 25.0%
! AAAAGATATGCACTTAAATC+AGG - chr2_4:55810721-55810740 None:intergenic 25.0%
! ATTACATTTGCAAATGACAT+GGG - chr2_4:55810902-55810921 None:intergenic 25.0%
! TATTACATTTGCAAATGACA+TGG - chr2_4:55810903-55810922 None:intergenic 25.0%
!!! TTTTGTAGAAAGTTGATCTT+GGG + chr2_4:55811072-55811091 Msa0336410:intron 25.0%
! AAGGTTAGAAATCAAAAGTT+TGG + chr2_4:55811566-55811585 Msa0336410:intron 25.0%
!! ATCAAAAGTTTGGATTTTGA+CGG + chr2_4:55811576-55811595 Msa0336410:intron 25.0%
! AAGTAATATAATCTTTCAGG+AGG - chr2_4:55811684-55811703 None:intergenic 25.0%
! CTGAAGTAATATAATCTTTC+AGG - chr2_4:55811687-55811706 None:intergenic 25.0%
! CTGAAAGATTATATTACTTC+AGG + chr2_4:55811685-55811704 Msa0336410:intron 25.0%
! GAAAGATTATATTACTTCAG+GGG + chr2_4:55811687-55811706 Msa0336410:intron 25.0%
! TTTGCATATTGGAAATCAAT+AGG - chr2_4:55811874-55811893 None:intergenic 25.0%
! ATTCATTTCTTATATCCAGA+TGG + chr2_4:55811900-55811919 Msa0336410:intron 25.0%
!!! TTACTTTTATTAACTTCCTC+AGG - chr2_4:55812170-55812189 None:intergenic 25.0%
! TTCAAATGTCATTGGAAATT+TGG + chr2_4:55812198-55812217 Msa0336410:intron 25.0%
! CAGGAAAGTTAAAATTTGTA+AGG - chr2_4:55812274-55812293 None:intergenic 25.0%
! AAATAAAATGTTCACCTTGT+TGG - chr2_4:55812390-55812409 None:intergenic 25.0%
! TATAAGTGCAAAAGACTAAA+TGG - chr2_4:55812505-55812524 None:intergenic 25.0%
!! TATAACTCAGATTTTGTTCA+AGG + chr2_4:55812521-55812540 Msa0336410:intron 25.0%
! AAGAATTCAATGTAGATGAT+AGG + chr2_4:55813220-55813239 Msa0336410:CDS 25.0%
!!! AATGTGGTTTTAATGTATGA+TGG + chr2_4:55813319-55813338 Msa0336410:intron 25.0%
! CAACCATTTCATATATATCA+AGG + chr2_4:55813382-55813401 Msa0336410:intron 25.0%
!!! CTATTACTCATTTTTATCCT+AGG + chr2_4:55813499-55813518 Msa0336410:intron 25.0%
!!! TCATTTTTATCCTAGGATTT+GGG + chr2_4:55813506-55813525 Msa0336410:intron 25.0%
!!! AATTTTAGAAGTTGGAAAGT+TGG + chr2_4:55813557-55813576 Msa0336410:intron 25.0%
!!! TAAAAGTTGATGAATATTGC+AGG + chr2_4:55813580-55813599 Msa0336410:intron 25.0%
! GAAATCTTTGCAAATTGAAT+TGG - chr2_4:55813714-55813733 None:intergenic 25.0%
! ATTCAATTTGCAAAGATTTC+TGG + chr2_4:55813714-55813733 Msa0336410:intron 25.0%
!!! AAAGATTTCTGGTAGAAAAT+GGG + chr2_4:55813725-55813744 Msa0336410:intron 25.0%
! GTAACAGTTAAAGAAATTGA+GGG + chr2_4:55813773-55813792 Msa0336410:intron 25.0%
!! CACTTTTAATGTCTATACTA+CGG - chr2_4:55813839-55813858 None:intergenic 25.0%
! GTATATATTGTTGGAAAATC+AGG + chr2_4:55814031-55814050 Msa0336410:intron 25.0%
! TTCAGATCTTCCTTTATTAT+AGG + chr2_4:55814099-55814118 Msa0336410:intron 25.0%
! GGAATAAGTACCTATAATAA+AGG - chr2_4:55814112-55814131 None:intergenic 25.0%
! GGAATGATTGGAATAAAATA+AGG - chr2_4:55814134-55814153 None:intergenic 25.0%
! TTATTGAATCATGGAATGAT+TGG - chr2_4:55814146-55814165 None:intergenic 25.0%
!! GATTCTTTTCGAAAAAATCT+AGG + chr2_4:55814347-55814366 Msa0336410:CDS 25.0%
!! TTTCGAAAAAATCTAGGTTT+TGG + chr2_4:55814353-55814372 Msa0336410:CDS 25.0%
!!! AATGCCAAATTTTGTTATCA+GGG - chr2_4:55814489-55814508 None:intergenic 25.0%
! ACAAGAAATGGATAAAACAA+TGG + chr2_4:55814586-55814605 Msa0336410:CDS 25.0%
!!! TGTTTTAGATGATACACAAA+AGG + chr2_4:55814748-55814767 Msa0336410:intron 25.0%
! AAATAAGGACTAAACTTACA+AGG - chr2_4:55814831-55814850 None:intergenic 25.0%
! AAACAAATTTGGATTGAGTA+AGG - chr2_4:55814907-55814926 None:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG + chr2_4:55814973-55814992 Msa0336410:intron 25.0%
!! TGAAGGGTTAATTATGTTTT+TGG - chr2_4:55815317-55815336 None:intergenic 25.0%
!! ACAAAACTTTAAAAACAGCA+AGG - chr2_4:55815578-55815597 None:intergenic 25.0%
! AATCCTGAAGAAAAAAAAAC+TGG - chr2_4:55815726-55815745 None:intergenic 25.0%
! ACAAAGCTCATATTACTATT+AGG + chr2_4:55816110-55816129 Msa0336410:three_prime_UTR 25.0%
! TCATATTTGATCTGAACAAT+TGG - chr2_4:55816221-55816240 None:intergenic 25.0%
!! TCTAAAATCTCATTTCTGTA+TGG - chr2_4:55816255-55816274 None:intergenic 25.0%
!! ACATTTCAGATTCTTTGAAA+CGG + chr2_4:55816275-55816294 Msa0336410:three_prime_UTR 25.0%
! TTACAATTACAGTTAATGAC+TGG - chr2_4:55816319-55816338 None:intergenic 25.0%
!!! TTGTTTTTGTAGAGTGAAGA+AGG + chr2_4:55808871-55808890 Msa0336410:intron 30.0%
TAGAGTTTGCATTTCGTTTA+GGG - chr2_4:55808943-55808962 None:intergenic 30.0%
!!! CTAAGTTTTTGGCTTCTTTT+AGG + chr2_4:55809029-55809048 Msa0336410:intron 30.0%
TTTCTATAAGCTCTTCTGAA+CGG - chr2_4:55809303-55809322 None:intergenic 30.0%
ACTACTGATCTGTTATTCAT+TGG + chr2_4:55809557-55809576 Msa0336410:intron 30.0%
CATTGAGAATAAGATGATAG+TGG + chr2_4:55809599-55809618 Msa0336410:CDS 30.0%
ATACTATTCATTTCATTGGC+AGG + chr2_4:55809779-55809798 Msa0336410:intron 30.0%
TTTCATTCATAACTGACGAT+AGG + chr2_4:55810108-55810127 Msa0336410:intron 30.0%
TGTTATATGATTCTCTGTGT+TGG + chr2_4:55810184-55810203 Msa0336410:intron 30.0%
AAACCATATATGAGAACAAC+AGG - chr2_4:55810290-55810309 None:intergenic 30.0%
!!! TTGCAAATTTTAACTGCATC+TGG - chr2_4:55810609-55810628 None:intergenic 30.0%
TTGCAAATACAAACCTATCT+CGG + chr2_4:55810623-55810642 Msa0336410:intron 30.0%
AAGCATAAGAGAATTGAGAT+AGG - chr2_4:55810786-55810805 None:intergenic 30.0%
! CTTGATAATAATTTGACACC+AGG + chr2_4:55810803-55810822 Msa0336410:intron 30.0%
TTACATTTGCAAATGACATG+GGG - chr2_4:55810901-55810920 None:intergenic 30.0%
! TGCATTTTCAATATTCCTAC+CGG - chr2_4:55811044-55811063 None:intergenic 30.0%
AGATCAACTTTCTACAAAAC+AGG - chr2_4:55811071-55811090 None:intergenic 30.0%
!! GTTTTGTAGAAAGTTGATCT+TGG + chr2_4:55811071-55811090 Msa0336410:intron 30.0%
! TTTGTAGAAAGTTGATCTTG+GGG + chr2_4:55811073-55811092 Msa0336410:intron 30.0%
! GATATGTTGACTATTCTGAT+AGG - chr2_4:55811162-55811181 None:intergenic 30.0%
TCAGAATAGTCAACATATCA+TGG + chr2_4:55811163-55811182 Msa0336410:intron 30.0%
GATATTTACATGCATGAAGA+AGG + chr2_4:55811185-55811204 Msa0336410:intron 30.0%
!! TCAAAAGTTTGGATTTTGAC+GGG + chr2_4:55811577-55811596 Msa0336410:intron 30.0%
TATATCATGTTGTTGTGAGT+AGG - chr2_4:55811607-55811626 None:intergenic 30.0%
CAGATTAAATTTCAGATGCA+TGG - chr2_4:55811639-55811658 None:intergenic 30.0%
TGCAAGGGAAATAACAAAAA+CGG + chr2_4:55812101-55812120 Msa0336410:intron 30.0%
! TCATTGGAAATTTGGAATGA+TGG + chr2_4:55812206-55812225 Msa0336410:intron 30.0%
! AACTTTCCTGTATACTTTTC+AGG + chr2_4:55812284-55812303 Msa0336410:intron 30.0%
TAATGATACGTAAACATGAC+AGG - chr2_4:55812415-55812434 None:intergenic 30.0%
AGTACTAAAATCCCACAATT+TGG + chr2_4:55812555-55812574 Msa0336410:intron 30.0%
AAGGAATTTCTTGTTGCATT+TGG + chr2_4:55812807-55812826 Msa0336410:CDS 30.0%
AGGAATTTCTTGTTGCATTT+GGG + chr2_4:55812808-55812827 Msa0336410:CDS 30.0%
TCACAGCCAAGAAAAATAAA+AGG - chr2_4:55812923-55812942 None:intergenic 30.0%
!!! TGTTTTTCAAGTATAGATCC+TGG - chr2_4:55813015-55813034 None:intergenic 30.0%
! CTAGATTTTGTATAGCAACA+GGG - chr2_4:55813086-55813105 None:intergenic 30.0%
! TTCTGAAAGGAAATCTTTGT+CGG + chr2_4:55813125-55813144 Msa0336410:CDS 30.0%
ATTAAAACCACATTAGAGCA+TGG - chr2_4:55813313-55813332 None:intergenic 30.0%
AGGAAATGAAGGAAACTAAT+AGG - chr2_4:55813443-55813462 None:intergenic 30.0%
!! CTCATTTTTATCCTAGGATT+TGG + chr2_4:55813505-55813524 Msa0336410:intron 30.0%
ATCATTAAAACCCAAATCCT+AGG - chr2_4:55813519-55813538 None:intergenic 30.0%
! GGAGCAGAATTTAATGTTTT+TGG + chr2_4:55813652-55813671 Msa0336410:intron 30.0%
!!! TAATGTTTTTGGTGAGCTTT+CGG + chr2_4:55813663-55813682 Msa0336410:intron 30.0%
!! CAAAGATTTCTGGTAGAAAA+TGG + chr2_4:55813724-55813743 Msa0336410:intron 30.0%
CGTAACAGTTAAAGAAATTG+AGG + chr2_4:55813772-55813791 Msa0336410:intron 30.0%
TGATTCTGCAATAACTTCTT+GGG - chr2_4:55813809-55813828 None:intergenic 30.0%
TTGATTCTGCAATAACTTCT+TGG - chr2_4:55813810-55813829 None:intergenic 30.0%
TCACTTCTCATCAAAGTAAT+TGG - chr2_4:55813918-55813937 None:intergenic 30.0%
! CCTGATGAATTTATGTTTTC+AGG - chr2_4:55814413-55814432 None:intergenic 30.0%
CCTGAAAACATAAATTCATC+AGG + chr2_4:55814410-55814429 Msa0336410:CDS 30.0%
!! GAATGCCAAATTTTGTTATC+AGG - chr2_4:55814490-55814509 None:intergenic 30.0%
GATAACAAAATTTGGCATTC+TGG + chr2_4:55814490-55814509 Msa0336410:CDS 30.0%
!!! GAGTGCAGAAATTTTTTGTA+GGG - chr2_4:55814875-55814894 None:intergenic 30.0%
!!! TGAGTGCAGAAATTTTTTGT+AGG - chr2_4:55814876-55814895 None:intergenic 30.0%
!!! TTTTGCGATATTTTTTTCGG+AGG - chr2_4:55815000-55815019 None:intergenic 30.0%
! CAAGTTTAGAACACTATGAA+CGG - chr2_4:55815135-55815154 None:intergenic 30.0%
! TACAAGGTTGCAATTTTGTA+GGG + chr2_4:55815290-55815309 Msa0336410:intron 30.0%
ATTGAATGTGTTAACTTAGC+AGG + chr2_4:55815374-55815393 Msa0336410:intron 30.0%
GAAAAAAAAACTGGCAAGTT+TGG - chr2_4:55815717-55815736 None:intergenic 30.0%
!!! TTGCCAGTTTTTTTTTCTTC+AGG + chr2_4:55815720-55815739 Msa0336410:intron 30.0%
! TGATATTTTGTCACCATACT+TGG + chr2_4:55815910-55815929 Msa0336410:intron 30.0%
! GATATTTTGTCACCATACTT+GGG + chr2_4:55815911-55815930 Msa0336410:intron 30.0%
ATGTTTAAGAAACCCAAGTA+TGG - chr2_4:55815926-55815945 None:intergenic 30.0%
TCTCGTAAACACAAGAAACT+TGG + chr2_4:55808742-55808761 Msa0336410:CDS 35.0%
AAGGAACTAGAAGTCCTATT+AGG + chr2_4:55808915-55808934 Msa0336410:CDS 35.0%
GTAGAGTTTGCATTTCGTTT+AGG - chr2_4:55808944-55808963 None:intergenic 35.0%
TTCAGCTTCATTCTTTGTGT+TGG + chr2_4:55808974-55808993 Msa0336410:intron 35.0%
TCAGCTTCATTCTTTGTGTT+GGG + chr2_4:55808975-55808994 Msa0336410:intron 35.0%
!!! CTTTGTGTTGGGTTGAATTT+TGG + chr2_4:55808986-55809005 Msa0336410:intron 35.0%
!!! TTTGGCTTCTTTTAGGATGA+TGG + chr2_4:55809036-55809055 Msa0336410:intron 35.0%
!!! TTGGCTTCTTTTAGGATGAT+GGG + chr2_4:55809037-55809056 Msa0336410:intron 35.0%
! GATTGCCAATTTTCTTCTAC+TGG + chr2_4:55809093-55809112 Msa0336410:CDS 35.0%
! GAAGTTTTCATAAGCTATCC+TGG - chr2_4:55809352-55809371 None:intergenic 35.0%
CATCTTATTCTCAATGACAC+AGG - chr2_4:55809595-55809614 None:intergenic 35.0%
!! GAGAATAAGATGATAGTGGT+TGG + chr2_4:55809603-55809622 Msa0336410:CDS 35.0%
!! AATAAGATGATAGTGGTTGG+TGG + chr2_4:55809606-55809625 Msa0336410:CDS 35.0%
!!! TGAGGGAACATTTCTAGTTT+TGG + chr2_4:55809668-55809687 Msa0336410:intron 35.0%
! AGAGCATCATGCCATTATTA+AGG - chr2_4:55809979-55809998 None:intergenic 35.0%
AATCCACCCTTAGTAAATTG+AGG + chr2_4:55810046-55810065 Msa0336410:intron 35.0%
TAGCAGCCTCAATTTACTAA+GGG - chr2_4:55810055-55810074 None:intergenic 35.0%
GAATCATATAACACCGTATG+AGG - chr2_4:55810177-55810196 None:intergenic 35.0%
AGGATGTTCTACAGGAATTT+AGG + chr2_4:55810236-55810255 Msa0336410:intron 35.0%
TGTCCTGTTGTTCTCATATA+TGG + chr2_4:55810284-55810303 Msa0336410:intron 35.0%
CACTTCATATAATCGATGAC+TGG + chr2_4:55810385-55810404 Msa0336410:intron 35.0%
! ACTGGCATAACGATGATTTT+TGG + chr2_4:55810403-55810422 Msa0336410:intron 35.0%
!!! CTCTTTTTTCTGGTTAACTC+GGG - chr2_4:55810438-55810457 None:intergenic 35.0%
!!! CCTCTTTTTTCTGGTTAACT+CGG - chr2_4:55810439-55810458 None:intergenic 35.0%
TAATTTGACACCAGGTTTCT+TGG + chr2_4:55810811-55810830 Msa0336410:intron 35.0%
AATTTGACACCAGGTTTCTT+GGG + chr2_4:55810812-55810831 Msa0336410:intron 35.0%
!!! CAGATATTTTGTCGATTCCT+GGG - chr2_4:55810872-55810891 None:intergenic 35.0%
ACTACTTGGCTAATCAAATC+AGG - chr2_4:55811224-55811243 None:intergenic 35.0%
! ATTTGATTAGCCAAGTAGTC+AGG + chr2_4:55811225-55811244 Msa0336410:intron 35.0%
CTGACCAAATATCTTGTTCT+TGG + chr2_4:55811360-55811379 Msa0336410:intron 35.0%
TCTGCCAAGAACAAGATATT+TGG - chr2_4:55811367-55811386 None:intergenic 35.0%
! GTATTCACTCGACTTTGAAA+CGG + chr2_4:55811812-55811831 Msa0336410:CDS 35.0%
TTTCTTATATCCAGATGGCA+TGG + chr2_4:55811905-55811924 Msa0336410:intron 35.0%
ACTAAGTGGTATATTACAGG+CGG + chr2_4:55811994-55812013 Msa0336410:CDS 35.0%
GGTAAAGAAATGAGAGACAT+GGG - chr2_4:55812063-55812082 None:intergenic 35.0%
AGGTAAAGAAATGAGAGACA+TGG - chr2_4:55812064-55812083 None:intergenic 35.0%
!! TTGTTGGTAGTGATAGAAGA+AGG - chr2_4:55812374-55812393 None:intergenic 35.0%
TTCTTCTATCACTACCAACA+AGG + chr2_4:55812373-55812392 Msa0336410:CDS 35.0%
! TCAGATTTTGTTCAAGGTAG+TGG + chr2_4:55812527-55812546 Msa0336410:intron 35.0%
! CAGATTTTGTTCAAGGTAGT+GGG + chr2_4:55812528-55812547 Msa0336410:intron 35.0%
! AATTTGGCCTTCTGGTTAAA+TGG + chr2_4:55812571-55812590 Msa0336410:intron 35.0%
TGAACTTCCATTTAACCAGA+AGG - chr2_4:55812581-55812600 None:intergenic 35.0%
! GAAGTTCACTAGACATGTTT+TGG + chr2_4:55812593-55812612 Msa0336410:intron 35.0%
GGAAAATTAAATCCTAGCGA+AGG - chr2_4:55812640-55812659 None:intergenic 35.0%
ATGATTTCCGTTGTATTAGC+AGG + chr2_4:55812752-55812771 Msa0336410:intron 35.0%
TGATTTCCGTTGTATTAGCA+GGG + chr2_4:55812753-55812772 Msa0336410:intron 35.0%
CTAAAACCCTGCTAATACAA+CGG - chr2_4:55812762-55812781 None:intergenic 35.0%
GGAATTTCTTGTTGCATTTG+GGG + chr2_4:55812809-55812828 Msa0336410:CDS 35.0%
GAATTTCTTGTTGCATTTGG+GGG + chr2_4:55812810-55812829 Msa0336410:CDS 35.0%
!!! CTGATTTGATGCCTCTTTTT+TGG - chr2_4:55812838-55812857 None:intergenic 35.0%
!! CAAAAAAGAGGCATCAAATC+AGG + chr2_4:55812836-55812855 Msa0336410:CDS 35.0%
!! TTATTTTTCTTGGCTGTGAC+AGG + chr2_4:55812924-55812943 Msa0336410:intron 35.0%
! AGAGTCATTTCTAAGTTGAG+TGG - chr2_4:55813046-55813065 None:intergenic 35.0%
! GCTAGATTTTGTATAGCAAC+AGG - chr2_4:55813087-55813106 None:intergenic 35.0%
!! CAATTAAACGTGGTTCTGAA+AGG + chr2_4:55813112-55813131 Msa0336410:CDS 35.0%
CATGATCAAATTGACTGTCA+TGG - chr2_4:55813197-55813216 None:intergenic 35.0%
ATGTAGATGATAGGATTGAC+AGG + chr2_4:55813229-55813248 Msa0336410:CDS 35.0%
! AGAACTTCTGTTTTACCTGA+GGG - chr2_4:55813278-55813297 None:intergenic 35.0%
! AAGAACTTCTGTTTTACCTG+AGG - chr2_4:55813279-55813298 None:intergenic 35.0%
ATCATAACCATGCTCTAATG+TGG + chr2_4:55813303-55813322 Msa0336410:intron 35.0%
! TCAAGGTTTGATTGTGCTTT+TGG + chr2_4:55813399-55813418 Msa0336410:intron 35.0%
TAATAGGCAGAAAAATCTCG+AGG - chr2_4:55813427-55813446 None:intergenic 35.0%
GTGCTTAACTTAGGAAATGA+AGG - chr2_4:55813454-55813473 None:intergenic 35.0%
GGATTGTATGTGCTTAACTT+AGG - chr2_4:55813463-55813482 None:intergenic 35.0%
!!! CTTTTTTTGTCGTCAAAGGA+GGG - chr2_4:55813962-55813981 None:intergenic 35.0%
!!! ACTTTTTTTGTCGTCAAAGG+AGG - chr2_4:55813963-55813982 None:intergenic 35.0%
!!! GTCACTTTTTTTGTCGTCAA+AGG - chr2_4:55813966-55813985 None:intergenic 35.0%
TATCTCAAGTATTAGCACCA+GGG - chr2_4:55813988-55814007 None:intergenic 35.0%
TTATCTCAAGTATTAGCACC+AGG - chr2_4:55813989-55814008 None:intergenic 35.0%
ACAACAAATCAAAATGACCC+TGG + chr2_4:55814263-55814282 Msa0336410:CDS 35.0%
!!! CTGTTCCTCCATATTGATTT+TGG - chr2_4:55814312-55814331 None:intergenic 35.0%
CAAAATCAATATGGAGGAAC+AGG + chr2_4:55814310-55814329 Msa0336410:CDS 35.0%
TCCTCCCTGATAACAAAATT+TGG + chr2_4:55814482-55814501 Msa0336410:CDS 35.0%
GACAATGTTAGATAGGTTGT+TGG - chr2_4:55814681-55814700 None:intergenic 35.0%
ATGTTCAAGCCTTACATTGT+CGG - chr2_4:55814708-55814727 None:intergenic 35.0%
!!! TGTTTTTGGTCCCTACAAAA+TGG + chr2_4:55814802-55814821 Msa0336410:intron 35.0%
AAGTAAGGACTAAACCTACA+AGG + chr2_4:55815274-55815293 Msa0336410:intron 35.0%
CTACAAAATTGCAACCTTGT+AGG - chr2_4:55815291-55815310 None:intergenic 35.0%
! CTACAAGGTTGCAATTTTGT+AGG + chr2_4:55815289-55815308 Msa0336410:intron 35.0%
ATAGAGTTGTGATCAATCCA+AGG - chr2_4:55815465-55815484 None:intergenic 35.0%
CAATTATGTTGTTAAGGGTG+AGG + chr2_4:55815780-55815799 Msa0336410:intron 35.0%
! AAACCTTTTCATGTGCAATG+AGG + chr2_4:55816034-55816053 Msa0336410:CDS 35.0%
!! TATATGGGAAGTGCATTTTG+AGG + chr2_4:55816136-55816155 Msa0336410:three_prime_UTR 35.0%
!! ATATGGGAAGTGCATTTTGA+GGG + chr2_4:55816137-55816156 Msa0336410:three_prime_UTR 35.0%
CATTAACACTGCATCTTTAG+AGG - chr2_4:55816184-55816203 None:intergenic 35.0%
ATGCAGTGTTAATGCATTAC+TGG + chr2_4:55816190-55816209 Msa0336410:three_prime_UTR 35.0%
GTAAACACAAGAAACTTGGC+AGG + chr2_4:55808746-55808765 Msa0336410:CDS 40.0%
CAACTTTCTGATACCACACA+AGG + chr2_4:55808896-55808915 Msa0336410:CDS 40.0%
! TTTCGTTTAGGGTGCCTAAT+AGG - chr2_4:55808932-55808951 None:intergenic 40.0%
!!! GAATTTTGGAACAGTGAGTG+TGG + chr2_4:55809000-55809019 Msa0336410:intron 40.0%
!!! TGGCTTCTTTTAGGATGATG+GGG + chr2_4:55809038-55809057 Msa0336410:intron 40.0%
!!! TTTTAGGATGATGGGGTTGA+AGG + chr2_4:55809045-55809064 Msa0336410:intron 40.0%
!! TTTAGGATGATGGGGTTGAA+GGG + chr2_4:55809046-55809065 Msa0336410:intron 40.0%
CAGGTCCAGTAGAAGAAAAT+TGG - chr2_4:55809101-55809120 None:intergenic 40.0%
GATGCACAGTTACTTATCTC+AGG - chr2_4:55809120-55809139 None:intergenic 40.0%
GAGATAAGTAACTGTGCATC+AGG + chr2_4:55809120-55809139 Msa0336410:CDS 40.0%
CATCAGGTAGTTCAGAGAAT+TGG + chr2_4:55809136-55809155 Msa0336410:CDS 40.0%
AGGTAGTTCAGAGAATTGGA+TGG + chr2_4:55809140-55809159 Msa0336410:CDS 40.0%
!! GATGGTGTTGTCAATTGCAA+GGG + chr2_4:55809158-55809177 Msa0336410:intron 40.0%
CATACATAGGATCTAGGAGT+AGG - chr2_4:55809189-55809208 None:intergenic 40.0%
GACATATCTATAAGCTCTCC+AGG + chr2_4:55809331-55809350 Msa0336410:intron 40.0%
CGTATGACGAAGACCATATT+TGG - chr2_4:55809493-55809512 None:intergenic 40.0%
GTATAGCTTAGATGACACAG+TGG - chr2_4:55809832-55809851 None:intergenic 40.0%
TTGCAAGCTGGAATCTGTAA+CGG - chr2_4:55809873-55809892 None:intergenic 40.0%
TTACAGATTCCAGCTTGCAA+GGG + chr2_4:55809873-55809892 Msa0336410:CDS 40.0%
TGATGCTCTCATCATAGACA+TGG + chr2_4:55809990-55810009 Msa0336410:intron 40.0%
GTAGCAGCCTCAATTTACTA+AGG - chr2_4:55810056-55810075 None:intergenic 40.0%
TGTCATGTTGATGCCTCATA+CGG + chr2_4:55810161-55810180 Msa0336410:intron 40.0%
CCGAGTTAACCAGAAAAAAG+AGG + chr2_4:55810436-55810455 Msa0336410:intron 40.0%
CAAATACAAACCTATCTCGG+AGG + chr2_4:55810626-55810645 Msa0336410:intron 40.0%
AAACCTATCTCGGAGGAAAA+TGG + chr2_4:55810633-55810652 Msa0336410:intron 40.0%
GGAGGAAAATGGAGAGTTTA+GGG + chr2_4:55810644-55810663 Msa0336410:intron 40.0%
ATTTGACACCAGGTTTCTTG+GGG + chr2_4:55810813-55810832 Msa0336410:intron 40.0%
!!! CCAGATATTTTGTCGATTCC+TGG - chr2_4:55810873-55810892 None:intergenic 40.0%
CCAGGAATCGACAAAATATC+TGG + chr2_4:55810870-55810889 Msa0336410:CDS 40.0%
CTTTGTCCTGATTCATGTTG+TGG + chr2_4:55810924-55810943 Msa0336410:intron 40.0%
AGAACTCCACAACATGAATC+AGG - chr2_4:55810933-55810952 None:intergenic 40.0%
TTACATGCATGAAGAAGGTG+TGG + chr2_4:55811190-55811209 Msa0336410:intron 40.0%
AGTTTGCCCTAACAGTTGTA+TGG - chr2_4:55811403-55811422 None:intergenic 40.0%
TTGATCTCAAGTCCTTGACA+TGG + chr2_4:55811486-55811505 Msa0336410:CDS 40.0%
TTATTCTTGACCATGCCATC+TGG - chr2_4:55811918-55811937 None:intergenic 40.0%
GATGGCATGGTCAAGAATAA+AGG + chr2_4:55811918-55811937 Msa0336410:intron 40.0%
! GTGTTTTATGTGGCACTAAG+TGG + chr2_4:55811980-55811999 Msa0336410:CDS 40.0%
GGCACTAAGTGGTATATTAC+AGG + chr2_4:55811991-55812010 Msa0336410:CDS 40.0%
! GCAGTTAGCGTTGAAAGAAA+AGG - chr2_4:55812084-55812103 None:intergenic 40.0%
TTCTTTCAACGCTAACTGCA+AGG + chr2_4:55812085-55812104 Msa0336410:intron 40.0%
TCTTTCAACGCTAACTGCAA+GGG + chr2_4:55812086-55812105 Msa0336410:intron 40.0%
! TTCAAGGTTTTTCTCACCTG+AGG + chr2_4:55812151-55812170 Msa0336410:intron 40.0%
! CCATGTCCTGAAAAGTATAC+AGG - chr2_4:55812293-55812312 None:intergenic 40.0%
!! CCTGTATACTTTTCAGGACA+TGG + chr2_4:55812290-55812309 Msa0336410:intron 40.0%
!! TTGGTAGTGATAGAAGAAGG+AGG - chr2_4:55812371-55812390 None:intergenic 40.0%
TAACCAGAAGGCCAAATTGT+GGG - chr2_4:55812569-55812588 None:intergenic 40.0%
TTAACCAGAAGGCCAAATTG+TGG - chr2_4:55812570-55812589 None:intergenic 40.0%
TACTGATGAAAACCTTCGCT+AGG + chr2_4:55812625-55812644 Msa0336410:intron 40.0%
ATTTGGGGGATCCAAAAAAG+AGG + chr2_4:55812824-55812843 Msa0336410:CDS 40.0%
AAGTATAGATCCTGGACCTT+TGG - chr2_4:55813007-55813026 None:intergenic 40.0%
AACAGGGTCGATAAAACGTT+GGG - chr2_4:55813070-55813089 None:intergenic 40.0%
CTAGCATCTGCAATTAAACG+TGG + chr2_4:55813102-55813121 Msa0336410:CDS 40.0%
TCTCTGTTCGTACAAGATTC+TGG + chr2_4:55813150-55813169 Msa0336410:CDS 40.0%
TGTCATGGAAGATGTTGGTA+GGG - chr2_4:55813182-55813201 None:intergenic 40.0%
TTGACTGTCATGGAAGATGT+TGG - chr2_4:55813187-55813206 None:intergenic 40.0%
TGATAGGATTGACAGGCATT+TGG + chr2_4:55813236-55813255 Msa0336410:CDS 40.0%
AGATGAAAGTTCTTTCCCTC+AGG + chr2_4:55813260-55813279 Msa0336410:CDS 40.0%
! GGGAAAAGTGGAGACTTTTT+AGG + chr2_4:55813631-55813650 Msa0336410:intron 40.0%
TGTCTTCCTGCATATACTTC+AGG + chr2_4:55814229-55814248 Msa0336410:intron 40.0%
GAGAGGAGCCAAAATCAATA+TGG + chr2_4:55814301-55814320 Msa0336410:CDS 40.0%
AGGAGCCAAAATCAATATGG+AGG + chr2_4:55814304-55814323 Msa0336410:CDS 40.0%
! CAATATGGAGGAACAGGTTT+TGG + chr2_4:55814316-55814335 Msa0336410:CDS 40.0%
!! GCCAAATTTTGTTATCAGGG+AGG - chr2_4:55814486-55814505 None:intergenic 40.0%
TGAATTACTGAGAGAGAAGC+TGG + chr2_4:55814628-55814647 Msa0336410:CDS 40.0%
TGTAAGGCTTGAACATGATG+TGG + chr2_4:55814712-55814731 Msa0336410:intron 40.0%
! ACATGATGTGGCTTTTCTGA+AGG + chr2_4:55814724-55814743 Msa0336410:intron 40.0%
!! TACAAGGTCGCCATTTTGTA+GGG - chr2_4:55814815-55814834 None:intergenic 40.0%
!! TTACAAGGTCGCCATTTTGT+AGG - chr2_4:55814816-55814835 None:intergenic 40.0%
! GTTCAGAAGTACACAATGAG+TGG - chr2_4:55815817-55815836 None:intergenic 40.0%
!!! GCAATCTGTTTTGACTGCAT+AGG + chr2_4:55815949-55815968 Msa0336410:intron 40.0%
CAAACAGAGACTGCAATCAA+TGG + chr2_4:55815988-55816007 Msa0336410:CDS 40.0%
TGCACATGAAAAGGTTTCCT+GGG - chr2_4:55816031-55816050 None:intergenic 40.0%
TTGCACATGAAAAGGTTTCC+TGG - chr2_4:55816032-55816051 None:intergenic 40.0%
ACACCTCATTGCACATGAAA+AGG - chr2_4:55816040-55816059 None:intergenic 40.0%
! GAGCTTTGTGTCATCATTTC+TGG - chr2_4:55816099-55816118 None:intergenic 40.0%
!! AGGACTTCTAGTTCCTTGTG+TGG - chr2_4:55808912-55808931 None:intergenic 45.0%
!! GGATGGTGTTGTCAATTGCA+AGG + chr2_4:55809157-55809176 Msa0336410:intron 45.0%
!! ATAGTGGTTGGTGGTGAATC+TGG + chr2_4:55809615-55809634 Msa0336410:CDS 45.0%
!! GTTGGTGGTGAATCTGGAAA+TGG + chr2_4:55809621-55809640 Msa0336410:CDS 45.0%
TGGATTGTTAGACGATGTGC+AGG + chr2_4:55809641-55809660 Msa0336410:CDS 45.0%
GTTACAGATTCCAGCTTGCA+AGG + chr2_4:55809872-55809891 Msa0336410:CDS 45.0%
AAACTATGACCCTTGCAAGC+TGG - chr2_4:55809885-55809904 None:intergenic 45.0%
AGCTTGCAAGGGTCATAGTT+TGG + chr2_4:55809884-55809903 Msa0336410:CDS 45.0%
CAGCCTCAATTTACTAAGGG+TGG - chr2_4:55810052-55810071 None:intergenic 45.0%
GGAGAGAAAGGATGTTCTAC+AGG + chr2_4:55810228-55810247 Msa0336410:intron 45.0%
! TCTCCATTTTCCTCCGAGAT+AGG - chr2_4:55810639-55810658 None:intergenic 45.0%
CGGAGGAAAATGGAGAGTTT+AGG + chr2_4:55810643-55810662 Msa0336410:intron 45.0%
TTTGACACCAGGTTTCTTGG+GGG + chr2_4:55810814-55810833 Msa0336410:intron 45.0%
!! AAAAAGGCACTCCTCATTGG+AGG + chr2_4:55810837-55810856 Msa0336410:CDS 45.0%
!! AAAAGGCACTCCTCATTGGA+GGG + chr2_4:55810838-55810857 Msa0336410:CDS 45.0%
TGGTCACTCATGGAAGCAAA+GGG + chr2_4:55811011-55811030 Msa0336410:CDS 45.0%
TTCATGTCTGCCTGACTACT+TGG - chr2_4:55811238-55811257 None:intergenic 45.0%
CAGTGGCCATACAACTGTTA+GGG + chr2_4:55811394-55811413 Msa0336410:CDS 45.0%
TTGGGGGAGAAGATTGCAAA+AGG + chr2_4:55811438-55811457 Msa0336410:CDS 45.0%
AACACTTACGTGCAGTGAAG+TGG - chr2_4:55811515-55811534 None:intergenic 45.0%
TCTTTCAGGAGGTAGTACGA+GGG - chr2_4:55811673-55811692 None:intergenic 45.0%
ATCTTTCAGGAGGTAGTACG+AGG - chr2_4:55811674-55811693 None:intergenic 45.0%
ACGTGGTTGAATCTTGGAGA+AGG - chr2_4:55811720-55811739 None:intergenic 45.0%
TTCTCCAAGATTCAACCACG+TGG + chr2_4:55811719-55811738 Msa0336410:CDS 45.0%
CATCATAAAGAGATGCCACG+TGG - chr2_4:55811737-55811756 None:intergenic 45.0%
CACGTGGCATCTCTTTATGA+TGG + chr2_4:55811735-55811754 Msa0336410:CDS 45.0%
! TGGTCAAGAATAAAGGTGCG+TGG + chr2_4:55811925-55811944 Msa0336410:CDS 45.0%
! GGTTGCTGTGGTGTTTTATG+TGG + chr2_4:55811970-55811989 Msa0336410:CDS 45.0%
AAGTGGTATATTACAGGCGG+TGG + chr2_4:55811997-55812016 Msa0336410:CDS 45.0%
GTAGTGATAGAAGAAGGAGG+CGG - chr2_4:55812368-55812387 None:intergenic 45.0%
! AATCCCACAATTTGGCCTTC+TGG + chr2_4:55812563-55812582 Msa0336410:intron 45.0%
!! GTATTAGCAGGGTTTTAGCC+TGG + chr2_4:55812764-55812783 Msa0336410:intron 45.0%
! TTTTTCTTGGCTGTGACAGG+TGG + chr2_4:55812927-55812946 Msa0336410:intron 45.0%
AGACAACCGACTAGTACCAA+AGG + chr2_4:55812988-55813007 Msa0336410:CDS 45.0%
CAACAGGGTCGATAAAACGT+TGG - chr2_4:55813071-55813090 None:intergenic 45.0%
CTGTCATGGAAGATGTTGGT+AGG - chr2_4:55813183-55813202 None:intergenic 45.0%
GCAGGAGTTTGTGAGAGATT+AGG + chr2_4:55813598-55813617 Msa0336410:intron 45.0%
! AGAAGTGACCCTGATGATGA+GGG + chr2_4:55813930-55813949 Msa0336410:intron 45.0%
GACGACAAAAAAAGTGACCC+TGG + chr2_4:55813968-55813987 Msa0336410:intron 45.0%
TCGTGTGCATCTGATATCCA+GGG - chr2_4:55814283-55814302 None:intergenic 45.0%
!! AGGAACAGGTTTTGGCATCT+GGG + chr2_4:55814324-55814343 Msa0336410:CDS 45.0%
!!! TCTAGGTTTTGGAAACCTCG+TGG + chr2_4:55814364-55814383 Msa0336410:CDS 45.0%
CTCGTGGTAGAAAGTGATCA+CGG + chr2_4:55814380-55814399 Msa0336410:CDS 45.0%
TCGTGGTAGAAAGTGATCAC+GGG + chr2_4:55814381-55814400 Msa0336410:CDS 45.0%
! TGGCATTCTGGAAGCACAAT+TGG + chr2_4:55814502-55814521 Msa0336410:CDS 45.0%
TTACTGAGAGAGAAGCTGGT+CGG + chr2_4:55814632-55814651 Msa0336410:CDS 45.0%
TGCAGAGTTAGCTCAAGAAG+AGG + chr2_4:55814655-55814674 Msa0336410:CDS 45.0%
CGGAGTGGACAATGTTAGAT+AGG - chr2_4:55814688-55814707 None:intergenic 45.0%
TTGTCCACTCCGACAATGTA+AGG + chr2_4:55814696-55814715 Msa0336410:intron 45.0%
CAGGAATTGCACTCTACAAG+AGG + chr2_4:55815393-55815412 Msa0336410:intron 45.0%
TCTACAAGAGGAGTTCTTGC+AGG + chr2_4:55815405-55815424 Msa0336410:intron 45.0%
TCCAATTGCAGGTACATCCT+TGG + chr2_4:55815445-55815464 Msa0336410:intron 45.0%
TCCAAGGATGTACCTGCAAT+TGG - chr2_4:55815449-55815468 None:intergenic 45.0%
TGTTAAGGGTGAGGAATCTG+AGG + chr2_4:55815789-55815808 Msa0336410:intron 45.0%
TGAAAAGGTTTCCTGGGAGT+AGG - chr2_4:55816025-55816044 None:intergenic 45.0%
! GTGCAATGAGGTGTTCTTGA+TGG + chr2_4:55816046-55816065 Msa0336410:exon 45.0%
!! AAAATATAATTTATTTGATA+TGG + chr2_4:55810207-55810226 Msa0336410:intron 5.0%
!!! TTAATATTTTTTTTTTCTTT+TGG + chr2_4:55810351-55810370 Msa0336410:intron 5.0%
AGGGTCAAGTGGTCATTCTG+AGG + chr2_4:55809065-55809084 Msa0336410:CDS 50.0%
ATCTGTAACGGCAGGCTACT+TGG - chr2_4:55809861-55809880 None:intergenic 50.0%
AAGCTGGAATCTGTAACGGC+AGG - chr2_4:55809869-55809888 None:intergenic 50.0%
! CCTTTTTCCCCCAAGAAACC+TGG - chr2_4:55810824-55810843 None:intergenic 50.0%
CCAGGTTTCTTGGGGGAAAA+AGG + chr2_4:55810821-55810840 Msa0336410:intron 50.0%
!! GGGAAAAAGGCACTCCTCAT+TGG + chr2_4:55810834-55810853 Msa0336410:CDS 50.0%
! GGTCTGTTTTCCCTCCAATG+AGG - chr2_4:55810851-55810870 None:intergenic 50.0%
ATTGGAGGGAAAACAGACCC+AGG + chr2_4:55810852-55810871 Msa0336410:CDS 50.0%
TTCCATGAGTGACCAGCACT+CGG - chr2_4:55811006-55811025 None:intergenic 50.0%
CTGGTCACTCATGGAAGCAA+AGG + chr2_4:55811010-55811029 Msa0336410:CDS 50.0%
GGAAGCAAAGGGAGACATAC+CGG + chr2_4:55811022-55811041 Msa0336410:CDS 50.0%
GCAGTGGCCATACAACTGTT+AGG + chr2_4:55811393-55811412 Msa0336410:CDS 50.0%
GGGGAGAAGATTGCAAAAGG+AGG + chr2_4:55811441-55811460 Msa0336410:CDS 50.0%
GTGAAGTGGAAGCCATGTCA+AGG - chr2_4:55811501-55811520 None:intergenic 50.0%
GATGCCACGTGGTTGAATCT+TGG - chr2_4:55811726-55811745 None:intergenic 50.0%
TTCCATCCATCACCAAGAGC+TGG + chr2_4:55811949-55811968 Msa0336410:CDS 50.0%
!! AACCAGCTCTTGGTGATGGA+TGG - chr2_4:55811954-55811973 None:intergenic 50.0%
ATATTACAGGCGGTGGAAGC+AGG + chr2_4:55812004-55812023 Msa0336410:CDS 50.0%
! CCTTTTCCTTGTGCTGCACA+AGG - chr2_4:55812791-55812810 None:intergenic 50.0%
CCTTGTGCAGCACAAGGAAA+AGG + chr2_4:55812788-55812807 Msa0336410:CDS 50.0%
! AGTCGGTTGTCTTCTGGAAG+CGG - chr2_4:55812980-55812999 None:intergenic 50.0%
GGTACTAGTCGGTTGTCTTC+TGG - chr2_4:55812986-55813005 None:intergenic 50.0%
CCTGGACCTTTGGTACTAGT+CGG - chr2_4:55812997-55813016 None:intergenic 50.0%
! GAGAAGTGACCCTGATGATG+AGG + chr2_4:55813929-55813948 Msa0336410:intron 50.0%
! GAAGTGACCCTGATGATGAG+GGG + chr2_4:55813931-55813950 Msa0336410:intron 50.0%
TGGAAAATCAGGCGATGTCG+TGG + chr2_4:55814042-55814061 Msa0336410:intron 50.0%
CTGCTGCCTGAAGTATATGC+AGG - chr2_4:55814238-55814257 None:intergenic 50.0%
CTCGTGTGCATCTGATATCC+AGG - chr2_4:55814284-55814303 None:intergenic 50.0%
GGATATCAGATGCACACGAG+AGG + chr2_4:55814284-55814303 Msa0336410:CDS 50.0%
!! GAGGAACAGGTTTTGGCATC+TGG + chr2_4:55814323-55814342 Msa0336410:CDS 50.0%
!! GGAACAGGTTTTGGCATCTG+GGG + chr2_4:55814325-55814344 Msa0336410:CDS 50.0%
CGTGATCACTTTCTACCACG+AGG - chr2_4:55814382-55814401 None:intergenic 50.0%
AACAATGGCTGACACGCTAC+AGG + chr2_4:55814601-55814620 Msa0336410:CDS 50.0%
CAAGCCTTACATTGTCGGAG+TGG - chr2_4:55814703-55814722 None:intergenic 50.0%
TTCTTGCAGGAGAAAGAGCC+AGG + chr2_4:55815418-55815437 Msa0336410:intron 50.0%
TCTTGCAGGAGAAAGAGCCA+GGG + chr2_4:55815419-55815438 Msa0336410:intron 50.0%
TACCTGCAATTGGAATGCCC+TGG - chr2_4:55815439-55815458 None:intergenic 50.0%
AAAATCGAGCACCTACTCCC+AGG + chr2_4:55816011-55816030 Msa0336410:CDS 50.0%
!! TGGGAAGTGCATTTTGAGGG+TGG + chr2_4:55816140-55816159 Msa0336410:three_prime_UTR 50.0%
GATGGGGTTGAAGGGTCAAG+TGG + chr2_4:55809054-55809073 Msa0336410:CDS 55.0%
AGACGATGTGCAGGTGAGTG+AGG + chr2_4:55809650-55809669 Msa0336410:intron 55.0%
GACGATGTGCAGGTGAGTGA+GGG + chr2_4:55809651-55809670 Msa0336410:intron 55.0%
TTGACACAGAGACCGAGTGC+TGG + chr2_4:55810991-55811010 Msa0336410:CDS 55.0%
GCAAAGGGAGACATACCGGT+AGG + chr2_4:55811026-55811045 Msa0336410:intron 55.0%
TCTTGGCAGATTGCTCGCAG+TGG + chr2_4:55811377-55811396 Msa0336410:intron 55.0%
CAGCAACCAGCTCTTGGTGA+TGG - chr2_4:55811958-55811977 None:intergenic 55.0%
TCACCAAGAGCTGGTTGCTG+TGG + chr2_4:55811958-55811977 Msa0336410:CDS 55.0%
ACACCACAGCAACCAGCTCT+TGG - chr2_4:55811964-55811983 None:intergenic 55.0%
CCGACTAGTACCAAAGGTCC+AGG + chr2_4:55812994-55813013 Msa0336410:CDS 55.0%
GGCTAAGCCCCTCATCATCA+GGG - chr2_4:55813941-55813960 None:intergenic 55.0%
! AGCCAGGGCATTCCAATTGC+AGG + chr2_4:55815434-55815453 Msa0336410:intron 55.0%
TGAGGGTGGCGATGAAGACT+TGG + chr2_4:55816154-55816173 Msa0336410:three_prime_UTR 55.0%
!! GACCGAGTGCTGGTCACTCA+TGG + chr2_4:55811001-55811020 Msa0336410:CDS 60.0%
CCTTGTGCTGCACAAGGACC+AGG - chr2_4:55812785-55812804 None:intergenic 60.0%
CCTGGTCCTTGTGCAGCACA+AGG + chr2_4:55812782-55812801 Msa0336410:CDS 60.0%
GGGCTAAGCCCCTCATCATC+AGG - chr2_4:55813942-55813961 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 55808626 55816451 55808626 ID=Msa0336410;Name=Msa0336410
chr2_4 mRNA 55808626 55816451 55808626 ID=Msa0336410-mRNA-1;Parent=Msa0336410;Name=Msa0336410-mRNA-1;_AED=0.10;_eAED=0.10;_QI=104|0.85|0.86|1|0.85|0.93|15|397|659
chr2_4 exon 55808626 55808767 55808626 ID=Msa0336410-mRNA-1:exon:16954;Parent=Msa0336410-mRNA-1
chr2_4 exon 55808883 55808964 55808883 ID=Msa0336410-mRNA-1:exon:16955;Parent=Msa0336410-mRNA-1
chr2_4 exon 55809051 55809161 55809051 ID=Msa0336410-mRNA-1:exon:16956;Parent=Msa0336410-mRNA-1
chr2_4 exon 55809585 55809662 55809585 ID=Msa0336410-mRNA-1:exon:16957;Parent=Msa0336410-mRNA-1
chr2_4 exon 55809801 55809905 55809801 ID=Msa0336410-mRNA-1:exon:16958;Parent=Msa0336410-mRNA-1
chr2_4 exon 55810825 55810891 55810825 ID=Msa0336410-mRNA-1:exon:16959;Parent=Msa0336410-mRNA-1
chr2_4 exon 55810982 55811043 55810982 ID=Msa0336410-mRNA-1:exon:16960;Parent=Msa0336410-mRNA-1
chr2_4 exon 55811386 55811525 55811386 ID=Msa0336410-mRNA-1:exon:16961;Parent=Msa0336410-mRNA-1
chr2_4 exon 55811707 55811833 55811707 ID=Msa0336410-mRNA-1:exon:16962;Parent=Msa0336410-mRNA-1
chr2_4 exon 55811919 55812033 55811919 ID=Msa0336410-mRNA-1:exon:16963;Parent=Msa0336410-mRNA-1
chr2_4 exon 55812306 55812394 55812306 ID=Msa0336410-mRNA-1:exon:16964;Parent=Msa0336410-mRNA-1
chr2_4 exon 55812774 55812857 55812774 ID=Msa0336410-mRNA-1:exon:16965;Parent=Msa0336410-mRNA-1
chr2_4 exon 55812946 55813281 55812946 ID=Msa0336410-mRNA-1:exon:16966;Parent=Msa0336410-mRNA-1
chr2_4 exon 55814251 55814712 55814251 ID=Msa0336410-mRNA-1:exon:16967;Parent=Msa0336410-mRNA-1
chr2_4 exon 55815971 55816451 55815971 ID=Msa0336410-mRNA-1:exon:16968;Parent=Msa0336410-mRNA-1
chr2_4 five_prime_UTR 55808626 55808729 55808626 ID=Msa0336410-mRNA-1:five_prime_utr;Parent=Msa0336410-mRNA-1
chr2_4 CDS 55808730 55808767 55808730 ID=Msa0336410-mRNA-1:cds;Parent=Msa0336410-mRNA-1
chr2_4 CDS 55808883 55808964 55808883 ID=Msa0336410-mRNA-1:cds;Parent=Msa0336410-mRNA-1
chr2_4 CDS 55809051 55809161 55809051 ID=Msa0336410-mRNA-1:cds;Parent=Msa0336410-mRNA-1
chr2_4 CDS 55809585 55809662 55809585 ID=Msa0336410-mRNA-1:cds;Parent=Msa0336410-mRNA-1
chr2_4 CDS 55809801 55809905 55809801 ID=Msa0336410-mRNA-1:cds;Parent=Msa0336410-mRNA-1
chr2_4 CDS 55810825 55810891 55810825 ID=Msa0336410-mRNA-1:cds;Parent=Msa0336410-mRNA-1
chr2_4 CDS 55810982 55811043 55810982 ID=Msa0336410-mRNA-1:cds;Parent=Msa0336410-mRNA-1
chr2_4 CDS 55811386 55811525 55811386 ID=Msa0336410-mRNA-1:cds;Parent=Msa0336410-mRNA-1
chr2_4 CDS 55811707 55811833 55811707 ID=Msa0336410-mRNA-1:cds;Parent=Msa0336410-mRNA-1
chr2_4 CDS 55811919 55812033 55811919 ID=Msa0336410-mRNA-1:cds;Parent=Msa0336410-mRNA-1
chr2_4 CDS 55812306 55812394 55812306 ID=Msa0336410-mRNA-1:cds;Parent=Msa0336410-mRNA-1
chr2_4 CDS 55812774 55812857 55812774 ID=Msa0336410-mRNA-1:cds;Parent=Msa0336410-mRNA-1
chr2_4 CDS 55812946 55813281 55812946 ID=Msa0336410-mRNA-1:cds;Parent=Msa0336410-mRNA-1
chr2_4 CDS 55814251 55814712 55814251 ID=Msa0336410-mRNA-1:cds;Parent=Msa0336410-mRNA-1
chr2_4 CDS 55815971 55816054 55815971 ID=Msa0336410-mRNA-1:cds;Parent=Msa0336410-mRNA-1
chr2_4 three_prime_UTR 55816055 55816451 55816055 ID=Msa0336410-mRNA-1:three_prime_utr;Parent=Msa0336410-mRNA-1
Gene Sequence

>Msa0336410

ATGTTTGGATTCTCTCGTAAACACAAGAAACTTGGCAGAGTGAAGAAGGTTCAACTTTCTGATACCACACAAGGAACTAGAAGTCCTATTAGGCACCCTAAACGAAATGCAAACTCTACTGATGATGGGGTTGAAGGGTCAAGTGGTCATTCTGAGGAAATTGATTGCCAATTTTCTTCTACTGGACCTGAGATAAGTAACTGTGCATCAGGTAGTTCAGAGAATTGGATGCATGCAGCCTGTGTCATTGAGAATAAGATGATAGTGGTTGGTGGTGAATCTGGAAATGGATTGTTAGACGATGTGCAGGTTCTAAATTTTGACAAATTTTCATGGACCACTGTGTCATCTAAGCTATACTTGTCACCAAGTAGCCTGCCGTTACAGATTCCAGCTTGCAAGGGTCATAGTTTGGTTTCTTGGGGGAAAAAGGCACTCCTCATTGGAGGGAAAACAGACCCAGGAATCGACAAAATATCTGTATGGGCGTTTGACACAGAGACCGAGTGCTGGTCACTCATGGAAGCAAAGGGAGACATACCGATTGCTCGCAGTGGCCATACAACTGTTAGGGCAAACTCTACTTTAATATTATTTGGGGGAGAAGATTGCAAAAGGAGGAAACTGAATGATCTACATATGTTTGATCTCAAGTCCTTGACATGGCTTCCACTTCACTGCACGGGAACAGCACCTTCTCCAAGATTCAACCACGTGGCATCTCTTTATGATGGTAAAATTCTTTTTATATTTGGAGGAGCAGCAAAATCTAAGACATTGAATGATTTGTATTCACTCGACTTTGAAACGATGGCATGGTCAAGAATAAAGGTGCGTGGTTTCCATCCATCACCAAGAGCTGGTTGCTGTGGTGTTTTATGTGGCACTAAGTGGTATATTACAGGCGGTGGAAGCAGGAAAAAACGACATGGAGAGACTTTGATATATGATATTCTAAAAAATGAATGGTCTGTAGAAATTGCACCGCCTCCTTCTTCTATCACTACCAACAAGGGTTTTAGCCTGGTCCTTGTGCAGCACAAGGAAAAGGAATTTCTTGTTGCATTTGGGGGATCCAAAAAAGAGGCATCAAATCAGGTGGAAGTGTTGAAAACAGAAAAAAATGAATCCGCTTCCAGAAGACAACCGACTAGTACCAAAGGTCCAGGATCTATACTTGAAAAACATTCGTCTTCCACTCAACTTAGAAATGACTCTTCCCAACGTTTTATCGACCCTGTTGCTATACAAAATCTAGCATCTGCAATTAAACGTGGTTCTGAAAGGAAATCTTTGTCGGAATCTCTGTTCGTACAAGATTCTGGCTCTCTCCCTACCAACATCTTCCATGACAGTCAATTTGATCATGATGAAGAATTCAATGTAGATGATAGGATTGACAGGCATTTGGAAGATGAAAGTTCTTTCCCTCAGGCAGCAGATCACACAACAAATCAAAATGACCCTGGATATCAGATGCACACGAGAGGAGCCAAAATCAATATGGAGGAACAGGTTTTGGCATCTGGGGATTCTTTTCGAAAAAATCTAGGTTTTGGAAACCTCGTGGTAGAAAGTGATCACGGGTCATTGCCTGAAAACATAAATTCATCAGGATCACTGTCTACTACTTCAAATATATATAATTATTATGAAACTAAAGTTTCCTCCCTGATAACAAAATTTGGCATTCTGGAAGCACAATTGGCAGCTTCATTAGCAAGCAAAGAAGCTGCTGAGAAAAATCTAGCATCTGCTTTTAAAAACAAACAAGAAATGGATAAAACAATGGCTGACACGCTACAGGAAATTGAATTACTGAGAGAGAAGCTGGTCGGTGCAGAGTTAGCTCAAGAAGAGGCCAACAACCTATCTAACATTGTCCACTCCGACAATGTTGAAGTTTTTCATCTCAAACAGAGACTGCAATCAATGGAAAATCGAGCACCTACTCCCAGGAAACCTTTTCATGTGCAATGA
Protein sequence

>Msa0336410

MFGFSRKHKKLGRVKKVQLSDTTQGTRSPIRHPKRNANSTDDGVEGSSGHSEEIDCQFSSTGPEISNCASGSSENWMHAACVIENKMIVVGGESGNGLLDDVQVLNFDKFSWTTVSSKLYLSPSSLPLQIPACKGHSLVSWGKKALLIGGKTDPGIDKISVWAFDTETECWSLMEAKGDIPIARSGHTTVRANSTLILFGGEDCKRRKLNDLHMFDLKSLTWLPLHCTGTAPSPRFNHVASLYDGKILFIFGGAAKSKTLNDLYSLDFETMAWSRIKVRGFHPSPRAGCCGVLCGTKWYITGGGSRKKRHGETLIYDILKNEWSVEIAPPPSSITTNKGFSLVLVQHKEKEFLVAFGGSKKEASNQVEVLKTEKNESASRRQPTSTKGPGSILEKHSSSTQLRNDSSQRFIDPVAIQNLASAIKRGSERKSLSESLFVQDSGSLPTNIFHDSQFDHDEEFNVDDRIDRHLEDESSFPQAADHTTNQNDPGYQMHTRGAKINMEEQVLASGDSFRKNLGFGNLVVESDHGSLPENINSSGSLSTTSNIYNYYETKVSSLITKFGILEAQLAASLASKEAAEKNLASAFKNKQEMDKTMADTLQEIELLREKLVGAELAQEEANNLSNIVHSDNVEVFHLKQRLQSMENRAPTPRKPFHVQ*