AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0968670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968670 MtrunA17_Chr2g0286241 88.624 712 15 4 1 659 1 699 0.0 1268
Msa0968670 MtrunA17_Chr4g0066851 66.255 729 166 13 1 659 1 719 0.0 904
Msa0968670 MtrunA17_Chr7g0272641 36.395 294 184 1 78 371 190 480 2.82e-61 216
Msa0968670 MtrunA17_Chr1g0197401 36.120 299 188 1 76 371 29 327 1.30e-60 211
Msa0968670 MtrunA17_Chr1g0192821 32.685 257 156 8 73 324 26 270 2.15e-28 120
Msa0968670 MtrunA17_Chr1g0192821 27.016 248 170 6 78 323 81 319 4.81e-21 97.8
Msa0968670 MtrunA17_Chr1g0192821 26.570 207 98 4 171 324 15 220 3.79e-14 75.9
Msa0968670 MtrunA17_Chr1g0192821 32.692 156 94 4 218 370 11 158 8.14e-14 74.7
Msa0968670 MtrunA17_Chr4g0074871 31.364 220 131 7 76 286 279 487 1.34e-21 100
Msa0968670 MtrunA17_Chr4g0074871 27.891 147 105 1 181 327 333 478 2.01e-12 70.9
Msa0968670 MtrunA17_Chr4g0061581 30.631 222 136 6 78 290 81 293 3.86e-20 94.7
Msa0968670 MtrunA17_Chr4g0061581 32.143 168 103 4 175 332 16 182 1.34e-16 83.6
Msa0968670 MtrunA17_Chr4g0061581 27.801 241 157 7 71 303 21 252 3.06e-16 82.4
Msa0968670 MtrunA17_Chr4g0061581 26.633 199 128 4 78 266 131 321 1.13e-14 77.4
Msa0968670 MtrunA17_Chr2g0311721 28.814 177 107 5 136 302 24 191 1.02e-16 82.0
Msa0968670 MtrunA17_Chr2g0311721 27.919 197 135 5 171 365 8 199 4.34e-14 73.9
Msa0968670 MtrunA17_Chr2g0311721 25.328 229 156 7 78 303 24 240 1.91e-12 68.9
Msa0968670 MtrunA17_Chr1g0198221 26.259 278 173 10 78 332 23 291 4.21e-16 81.6
Msa0968670 MtrunA17_Chr1g0198221 26.829 287 177 8 71 338 73 345 2.01e-14 76.3
Msa0968670 MtrunA17_Chr1g0198221 31.613 155 96 5 178 324 14 166 8.11e-14 74.3
Msa0968670 MtrunA17_Chr1g0207821 28.980 245 138 10 84 303 81 314 5.93e-16 81.6
Msa0968670 MtrunA17_Chr1g0196221 23.875 289 184 8 119 372 7 294 4.95e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968670 AT5G18590.2 54.932 730 235 13 1 658 1 708 0.0 729
Msa0968670 AT5G18590.1 54.932 730 235 13 1 658 1 708 0.0 729
Msa0968670 AT3G05420.2 34.969 326 209 2 78 401 188 512 1.15e-65 229
Msa0968670 AT3G05420.1 34.969 326 209 2 78 401 187 511 1.22e-65 229
Msa0968670 AT5G27630.2 34.146 328 214 1 76 401 186 513 4.97e-64 222
Msa0968670 AT5G27630.4 36.242 298 188 1 76 371 186 483 1.07e-63 223
Msa0968670 AT5G27630.1 36.242 298 188 1 76 371 186 483 1.11e-63 223
Msa0968670 AT5G27630.3 36.242 298 188 1 76 371 186 483 1.29e-63 223
Msa0968670 AT5G04420.2 34.242 330 205 2 69 389 29 355 1.63e-57 203
Msa0968670 AT5G04420.1 34.242 330 205 2 69 389 29 355 1.63e-57 203
Msa0968670 AT5G04420.3 34.242 330 205 2 69 389 29 355 1.63e-57 203
Msa0968670 AT1G18610.1 31.532 222 134 6 78 290 81 293 2.66e-23 104
Msa0968670 AT1G18610.1 26.101 318 208 12 69 372 19 323 7.25e-19 90.9
Msa0968670 AT1G18610.2 31.532 222 134 6 78 290 81 293 2.66e-23 104
Msa0968670 AT1G18610.2 26.101 318 208 12 69 372 19 323 7.25e-19 90.9
Msa0968670 AT1G74150.1 26.182 275 184 6 78 342 78 343 9.27e-21 97.1
Msa0968670 AT1G74150.1 33.171 205 123 6 161 358 52 249 1.46e-17 87.0
Msa0968670 AT1G74150.2 26.182 275 184 6 78 342 78 343 9.62e-21 97.1
Msa0968670 AT1G74150.2 33.171 205 123 6 161 358 52 249 1.48e-17 87.0
Msa0968670 AT1G74150.4 25.862 290 194 7 63 342 49 327 1.18e-20 96.7
Msa0968670 AT1G74150.4 32.673 202 122 6 164 358 39 233 3.60e-16 82.4
Msa0968670 AT1G74150.3 26.894 264 172 7 63 316 65 317 1.32e-20 96.7
Msa0968670 AT1G74150.3 33.171 205 123 6 161 358 52 249 1.44e-17 87.0
Msa0968670 AT3G07720.1 28.571 196 123 5 136 323 26 212 2.22e-17 84.3
Msa0968670 AT3G07720.1 24.627 268 192 7 171 436 10 269 7.98e-14 73.6
Msa0968670 AT3G07720.1 24.779 226 161 4 78 303 26 242 7.53e-11 64.7
Msa0968670 AT2G36360.2 31.928 166 99 5 178 331 14 177 8.50e-17 84.3
Msa0968670 AT2G36360.2 26.523 279 169 11 78 331 23 290 2.17e-15 79.7
Msa0968670 AT2G36360.2 29.478 268 160 9 61 312 64 318 8.50e-14 74.7
Msa0968670 AT2G36360.1 31.928 166 99 5 178 331 14 177 8.50e-17 84.3
Msa0968670 AT2G36360.1 26.523 279 169 11 78 331 23 290 2.17e-15 79.7
Msa0968670 AT2G36360.1 29.478 268 160 9 61 312 64 318 8.50e-14 74.7
Msa0968670 AT2G36360.3 31.928 166 99 5 178 331 14 177 1.09e-16 84.0
Msa0968670 AT2G36360.3 25.281 356 223 13 78 408 23 360 2.15e-15 79.7
Msa0968670 AT2G36360.3 29.478 268 160 9 61 312 64 318 1.06e-13 74.7
Msa0968670 AT2G36360.4 31.928 166 99 5 178 331 14 177 1.53e-16 83.6
Msa0968670 AT2G36360.4 26.259 278 171 10 78 331 23 290 3.53e-15 79.3
Msa0968670 AT2G36360.4 29.478 268 160 9 61 312 64 318 1.20e-13 74.3
Msa0968670 AT4G04670.1 27.706 231 151 6 78 305 328 545 2.03e-15 80.9
Msa0968670 AT4G04670.1 27.358 212 145 3 119 323 304 513 2.17e-13 74.3
Msa0968670 AT4G04670.1 25.850 147 108 1 181 327 322 467 2.41e-11 67.8
Msa0968670 AT1G74150.6 28.814 177 120 3 171 342 2 177 2.60e-15 79.0
Msa0968670 AT1G74150.6 28.571 154 101 3 136 285 18 166 4.27e-12 68.9
Msa0968670 AT1G74150.5 28.814 177 120 3 171 342 2 177 2.60e-15 79.0
Msa0968670 AT1G74150.5 28.571 154 101 3 136 285 18 166 4.27e-12 68.9
Msa0968670 AT5G50310.1 28.906 256 147 10 84 315 81 325 4.53e-15 79.3
Msa0968670 AT2G36360.5 30.857 175 98 6 178 331 14 186 1.89e-14 77.0
Msa0968670 AT2G36360.5 24.932 365 222 14 78 408 23 369 1.96e-13 73.6
Msa0968670 AT2G36360.5 26.866 268 176 6 61 312 64 327 1.57e-11 67.8
Msa0968670 AT3G16410.1 27.273 242 166 5 113 348 242 479 4.72e-14 75.9
Msa0968670 AT2G18915.1 31.890 254 134 14 76 303 337 577 7.46e-14 75.5
Msa0968670 AT2G18915.2 31.890 254 134 14 76 303 347 587 8.13e-14 75.1
Msa0968670 AT1G03445.1 27.749 191 111 6 131 295 30 219 1.64e-13 74.7
Msa0968670 AT1G03445.1 30.588 170 91 5 179 330 26 186 1.06e-11 68.6
Msa0968670 AT1G03445.2 27.749 191 111 6 131 295 30 219 1.94e-13 74.3
Msa0968670 AT1G03445.2 30.588 170 91 5 179 330 26 186 1.21e-11 68.6
Msa0968670 AT3G16400.2 29.050 179 125 2 171 348 153 330 1.27e-12 70.9
Msa0968670 AT3G16400.1 29.050 179 125 2 171 348 153 330 1.27e-12 70.9
Msa0968670 AT2G33070.1 26.141 241 170 4 113 348 94 331 2.38e-12 70.1
Msa0968670 AT2G33070.2 26.141 241 170 4 113 348 94 331 2.38e-12 70.1
Msa0968670 AT5G48180.1 25.877 228 155 6 78 303 24 239 5.87e-12 67.8
Msa0968670 AT5G48180.1 27.041 196 125 6 136 323 24 209 1.12e-11 67.0
Msa0968670 AT5G48180.1 27.948 229 132 8 171 380 8 222 3.14e-11 65.9
Msa0968670 AT2G33070.3 28.249 177 125 2 173 348 158 333 1.25e-11 67.8

Find 154 sgRNAs with CRISPR-Local

Find 473 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCTACTTTAATATTATT+TGG 0.042815 6_4:+2855 Msa0968670:CDS
GAGCTTTGTGTCATCATTTC+TGG 0.119377 6_4:-7532 None:intergenic
CTGTTCCTCCATATTGATTT+TGG 0.161780 6_4:-5745 None:intergenic
TCCTCCCTGATAACAAAATT+TGG 0.178023 6_4:+5918 Msa0968670:CDS
CTGTAATTGTAATTGAATTA+TGG 0.197803 6_4:+7763 Msa0968670:three_prime_UTR
AGGAATTTCTTGTTGCATTT+GGG 0.232869 6_4:+4244 Msa0968670:CDS
TATTACTATTAGGACATATA+TGG 0.234014 6_4:+7556 Msa0968670:three_prime_UTR
ACTCTACTTTAATATTATTT+GGG 0.246774 6_4:+2856 Msa0968670:CDS
CATTAACACTGCATCTTTAG+AGG 0.255692 6_4:-7617 None:intergenic
GATAACAAAATTTGGCATTC+TGG 0.261465 6_4:+5926 Msa0968670:CDS
AAGGAATTTCTTGTTGCATT+TGG 0.266568 6_4:+4243 Msa0968670:CDS
TAGAGTTTGCATTTCGTTTA+GGG 0.271535 6_4:-376 None:intergenic
GTAGAGTTTGCATTTCGTTT+AGG 0.274524 6_4:-377 None:intergenic
CAATATGGAGGAACAGGTTT+TGG 0.276025 6_4:+5752 Msa0968670:CDS
GGTACTAGTCGGTTGTCTTC+TGG 0.281071 6_4:-4419 None:intergenic
TAATTTGACACCAGGTTTCT+TGG 0.311604 6_4:+2247 Msa0968670:intron
AATTTGACACCAGGTTTCTT+GGG 0.325115 6_4:+2248 Msa0968670:intron
TCTCTGTTCGTACAAGATTC+TGG 0.339134 6_4:+4586 Msa0968670:CDS
ACAAAGCTCATATTACTATT+AGG 0.343163 6_4:+7546 Msa0968670:three_prime_UTR
AGAAGAAGAATAAAGATGTT+TGG 0.345399 6_4:+151 Msa0968670:exon
ATGCAGTGTTAATGCATTAC+TGG 0.349305 6_4:+7626 Msa0968670:three_prime_UTR
TTTCGTTTAGGGTGCCTAAT+AGG 0.354777 6_4:-365 None:intergenic
ATAGTGGTTGGTGGTGAATC+TGG 0.354968 6_4:+1051 Msa0968670:CDS
CAGGTCCAGTAGAAGAAAAT+TGG 0.371719 6_4:-534 None:intergenic
TGATAGGATTGACAGGCATT+TGG 0.374528 6_4:+4672 Msa0968670:CDS
AAATAAAATGTTCACCTTGT+TGG 0.379564 6_4:-3823 None:intergenic
TCTAAAATCTCATTTCTGTA+TGG 0.380222 6_4:-7688 None:intergenic
AGCTTGCAAGGGTCATAGTT+TGG 0.382174 6_4:+1320 Msa0968670:CDS
CCAGGAATCGACAAAATATC+TGG 0.383294 6_4:+2306 Msa0968670:CDS
CTCGTGTGCATCTGATATCC+AGG 0.391162 6_4:-5717 None:intergenic
TTGCACATGAAAAGGTTTCC+TGG 0.391252 6_4:-7465 None:intergenic
GGCACTAAGTGGTATATTAC+AGG 0.393302 6_4:+3427 Msa0968670:CDS
CAAAATCAATATGGAGGAAC+AGG 0.395128 6_4:+5746 Msa0968670:CDS
CGGAGTGGACAATGTTAGAT+AGG 0.395718 6_4:-6121 None:intergenic
GCAGTGGCCATACAACTGTT+AGG 0.396047 6_4:+2829 Msa0968670:CDS
ATCTGTAACGGCAGGCTACT+TGG 0.402706 6_4:-1294 None:intergenic
AAGTATAGATCCTGGACCTT+TGG 0.407645 6_4:-4440 None:intergenic
CATCAGGTAGTTCAGAGAAT+TGG 0.408902 6_4:+572 Msa0968670:CDS
TGAAAACAAAACCACACAAA+AGG 0.413499 6_4:-60 None:intergenic
TGGCATTCTGGAAGCACAAT+TGG 0.415991 6_4:+5938 Msa0968670:CDS
AAGAATTCAATGTAGATGAT+AGG 0.423853 6_4:+4656 Msa0968670:CDS
ATGTTCAAGCCTTACATTGT+CGG 0.432027 6_4:-6141 None:intergenic
TCATATTTGATCTGAACAAT+TGG 0.432756 6_4:-7654 None:intergenic
AAGGAACTAGAAGTCCTATT+AGG 0.436143 6_4:+351 Msa0968670:CDS
ACACCTCATTGCACATGAAA+AGG 0.437302 6_4:-7473 None:intergenic
GATGCCACGTGGTTGAATCT+TGG 0.440918 6_4:-3159 None:intergenic
GAGAGGAGCCAAAATCAATA+TGG 0.441578 6_4:+5737 Msa0968670:CDS
GAGATAAGTAACTGTGCATC+AGG 0.444693 6_4:+556 Msa0968670:CDS
CCTTGTGCTGCACAAGGACC+AGG 0.446536 6_4:-4218 None:intergenic
GATGGCATGGTCAAGAATAA+AGG 0.449810 6_4:+3354 Msa0968670:intron
CCTGAAAACATAAATTCATC+AGG 0.456851 6_4:+5846 Msa0968670:CDS
CAAACAGAGACTGCAATCAA+TGG 0.463940 6_4:+7424 Msa0968670:CDS
TTCTGAAAGGAAATCTTTGT+CGG 0.471559 6_4:+4561 Msa0968670:CDS
ATATTACAGGCGGTGGAAGC+AGG 0.479398 6_4:+3440 Msa0968670:CDS
GTTACAGATTCCAGCTTGCA+AGG 0.482796 6_4:+1308 Msa0968670:CDS
AGTTTGCCCTAACAGTTGTA+TGG 0.485004 6_4:-2836 None:intergenic
CCTTGTGCAGCACAAGGAAA+AGG 0.486212 6_4:+4224 Msa0968670:CDS
GTGCAATGAGGTGTTCTTGA+TGG 0.487352 6_4:+7482 Msa0968670:exon
TGCACATGAAAAGGTTTCCT+GGG 0.490413 6_4:-7464 None:intergenic
ATTACTATTAGGACATATAT+GGG 0.496650 6_4:+7557 Msa0968670:three_prime_UTR
GACAATGTTAGATAGGTTGT+TGG 0.501250 6_4:-6114 None:intergenic
AACAGGGTCGATAAAACGTT+GGG 0.503162 6_4:-4503 None:intergenic
AGTCGGTTGTCTTCTGGAAG+CGG 0.503270 6_4:-4413 None:intergenic
TGAATTACTGAGAGAGAAGC+TGG 0.504426 6_4:+6064 Msa0968670:CDS
AACACTTACGTGCAGTGAAG+TGG 0.505581 6_4:-2948 None:intergenic
GACCGAGTGCTGGTCACTCA+TGG 0.511048 6_4:+2437 Msa0968670:CDS
GAAAACAAAACCACACAAAA+GGG 0.512761 6_4:-59 None:intergenic
CATGATCAAATTGACTGTCA+TGG 0.516143 6_4:-4630 None:intergenic
AACAATGGCTGACACGCTAC+AGG 0.516177 6_4:+6037 Msa0968670:CDS
AAACTATGACCCTTGCAAGC+TGG 0.516811 6_4:-1318 None:intergenic
AGATGAAAGTTCTTTCCCTC+AGG 0.517228 6_4:+4696 Msa0968670:CDS
TTACAATTACAGTTAATGAC+TGG 0.517332 6_4:-7752 None:intergenic
TTCCATCCATCACCAAGAGC+TGG 0.517381 6_4:+3385 Msa0968670:CDS
GTATTCACTCGACTTTGAAA+CGG 0.519278 6_4:+3248 Msa0968670:CDS
CTCTACTTTAATATTATTTG+GGG 0.519326 6_4:+2857 Msa0968670:CDS
GTTGGTGGTGAATCTGGAAA+TGG 0.520081 6_4:+1057 Msa0968670:CDS
TGAGGGTGGCGATGAAGACT+TGG 0.522080 6_4:+7590 Msa0968670:three_prime_UTR
CAGTGGCCATACAACTGTTA+GGG 0.523904 6_4:+2830 Msa0968670:CDS
TCTCGTAAACACAAGAAACT+TGG 0.524489 6_4:+178 Msa0968670:CDS
GGAAGCAAAGGGAGACATAC+CGG 0.526021 6_4:+2458 Msa0968670:CDS
ATGTAGATGATAGGATTGAC+AGG 0.527338 6_4:+4665 Msa0968670:CDS
ACACCACAGCAACCAGCTCT+TGG 0.531616 6_4:-3397 None:intergenic
TTCCATGAGTGACCAGCACT+CGG 0.537533 6_4:-2439 None:intergenic
GGAATTTCTTGTTGCATTTG+GGG 0.539505 6_4:+4245 Msa0968670:CDS
ACATTTCAGATTCTTTGAAA+CGG 0.539772 6_4:+7711 Msa0968670:three_prime_UTR
GATGCACAGTTACTTATCTC+AGG 0.542667 6_4:-553 None:intergenic
CTGGTCACTCATGGAAGCAA+AGG 0.547648 6_4:+2446 Msa0968670:CDS
CAGCAACCAGCTCTTGGTGA+TGG 0.549757 6_4:-3391 None:intergenic
TTTAGGATGATGGGGTTGAA+GGG 0.550340 6_4:+482 Msa0968670:intron
AACCAGCTCTTGGTGATGGA+TGG 0.554218 6_4:-3387 None:intergenic
CACGTGGCATCTCTTTATGA+TGG 0.554865 6_4:+3171 Msa0968670:CDS
AAGTGGTATATTACAGGCGG+TGG 0.557210 6_4:+3433 Msa0968670:CDS
ATTTGACACCAGGTTTCTTG+GGG 0.558080 6_4:+2249 Msa0968670:intron
GGGGAGAAGATTGCAAAAGG+AGG 0.563418 6_4:+2877 Msa0968670:CDS
TTTCTTATATCCAGATGGCA+TGG 0.566220 6_4:+3341 Msa0968670:intron
CAATTAAACGTGGTTCTGAA+AGG 0.566360 6_4:+4548 Msa0968670:CDS
AGAGTCATTTCTAAGTTGAG+TGG 0.578930 6_4:-4479 None:intergenic
CCGACTAGTACCAAAGGTCC+AGG 0.580716 6_4:+4430 Msa0968670:CDS
TGGATTGTTAGACGATGTGC+AGG 0.584889 6_4:+1077 Msa0968670:CDS
CCTGGACCTTTGGTACTAGT+CGG 0.585499 6_4:-4430 None:intergenic
CTCGTGGTAGAAAGTGATCA+CGG 0.585915 6_4:+5816 Msa0968670:CDS
CCTGGTCCTTGTGCAGCACA+AGG 0.587673 6_4:+4218 Msa0968670:CDS
AAAATCGAGCACCTACTCCC+AGG 0.588115 6_4:+7447 Msa0968670:CDS
GTAAACACAAGAAACTTGGC+AGG 0.590232 6_4:+182 Msa0968670:CDS
GATGGGGTTGAAGGGTCAAG+TGG 0.591764 6_4:+490 Msa0968670:CDS
TTGTTGGTAGTGATAGAAGA+AGG 0.594047 6_4:-3807 None:intergenic
TGGTCACTCATGGAAGCAAA+GGG 0.594851 6_4:+2447 Msa0968670:CDS
AAGCTGGAATCTGTAACGGC+AGG 0.596939 6_4:-1302 None:intergenic
TCACCAAGAGCTGGTTGCTG+TGG 0.597396 6_4:+3394 Msa0968670:CDS
CTGTCATGGAAGATGTTGGT+AGG 0.597877 6_4:-4616 None:intergenic
TTGATCTCAAGTCCTTGACA+TGG 0.599083 6_4:+2922 Msa0968670:CDS
AGGACTTCTAGTTCCTTGTG+TGG 0.600271 6_4:-345 None:intergenic
CAACAGGGTCGATAAAACGT+TGG 0.602316 6_4:-4504 None:intergenic
CAACTTTCTGATACCACACA+AGG 0.603801 6_4:+332 Msa0968670:CDS
CATCTTATTCTCAATGACAC+AGG 0.607094 6_4:-1028 None:intergenic
TTACAGATTCCAGCTTGCAA+GGG 0.607096 6_4:+1309 Msa0968670:CDS
GTGAAGTGGAAGCCATGTCA+AGG 0.607359 6_4:-2934 None:intergenic
TGCAGAGTTAGCTCAAGAAG+AGG 0.607697 6_4:+6091 Msa0968670:CDS
TTGCAAGCTGGAATCTGTAA+CGG 0.609492 6_4:-1306 None:intergenic
CATTGAGAATAAGATGATAG+TGG 0.617742 6_4:+1035 Msa0968670:CDS
ACAACAAATCAAAATGACCC+TGG 0.618312 6_4:+5699 Msa0968670:CDS
TTGACACAGAGACCGAGTGC+TGG 0.619406 6_4:+2427 Msa0968670:CDS
TGAAAAGGTTTCCTGGGAGT+AGG 0.622222 6_4:-7458 None:intergenic
TCGTGTGCATCTGATATCCA+GGG 0.622732 6_4:-5716 None:intergenic
GAATTTCTTGTTGCATTTGG+GGG 0.629851 6_4:+4246 Msa0968670:CDS
GAGAATAAGATGATAGTGGT+TGG 0.633657 6_4:+1039 Msa0968670:CDS
TCTTGGCAGATTGCTCGCAG+TGG 0.636047 6_4:+2813 Msa0968670:intron
AATAAGATGATAGTGGTTGG+TGG 0.636096 6_4:+1042 Msa0968670:CDS
AGGGTCAAGTGGTCATTCTG+AGG 0.636554 6_4:+501 Msa0968670:CDS
CTAGCATCTGCAATTAAACG+TGG 0.637684 6_4:+4538 Msa0968670:CDS
TCGTGGTAGAAAGTGATCAC+GGG 0.638127 6_4:+5817 Msa0968670:CDS
ACAAGAAATGGATAAAACAA+TGG 0.639188 6_4:+6022 Msa0968670:CDS
AAAAGGCACTCCTCATTGGA+GGG 0.642366 6_4:+2274 Msa0968670:CDS
TTGACTGTCATGGAAGATGT+TGG 0.644032 6_4:-4620 None:intergenic
ATTGGAGGGAAAACAGACCC+AGG 0.645160 6_4:+2288 Msa0968670:CDS
CGTGATCACTTTCTACCACG+AGG 0.645412 6_4:-5815 None:intergenic
TCTACTTTAATATTATTTGG+GGG 0.647440 6_4:+2858 Msa0968670:CDS
TGTCATGGAAGATGTTGGTA+GGG 0.647629 6_4:-4615 None:intergenic
AGGAGCCAAAATCAATATGG+AGG 0.652394 6_4:+5740 Msa0968670:CDS
TTTGACACCAGGTTTCTTGG+GGG 0.653476 6_4:+2250 Msa0968670:intron
ACGTGGTTGAATCTTGGAGA+AGG 0.655883 6_4:-3153 None:intergenic
TTCTTCTATCACTACCAACA+AGG 0.656018 6_4:+3809 Msa0968670:CDS
AGGTAGTTCAGAGAATTGGA+TGG 0.659831 6_4:+576 Msa0968670:CDS
GGATATCAGATGCACACGAG+AGG 0.670333 6_4:+5720 Msa0968670:CDS
AGACAACCGACTAGTACCAA+AGG 0.673944 6_4:+4424 Msa0968670:CDS
CAAGCCTTACATTGTCGGAG+TGG 0.682789 6_4:-6136 None:intergenic
TGGTCAAGAATAAAGGTGCG+TGG 0.685381 6_4:+3361 Msa0968670:CDS
TTACTGAGAGAGAAGCTGGT+CGG 0.685529 6_4:+6068 Msa0968670:CDS
TTGGTAGTGATAGAAGAAGG+AGG 0.691034 6_4:-3804 None:intergenic
ACTAAGTGGTATATTACAGG+CGG 0.714772 6_4:+3430 Msa0968670:CDS
CATCATAAAGAGATGCCACG+TGG 0.722412 6_4:-3170 None:intergenic
TTCTCCAAGATTCAACCACG+TGG 0.739104 6_4:+3155 Msa0968670:CDS
GTAGTGATAGAAGAAGGAGG+CGG 0.739186 6_4:-3801 None:intergenic
GTATAGCTTAGATGACACAG+TGG 0.805097 6_4:-1265 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATATTGACTAATTATT+TGG + chr6_4:1171-1190 Msa0968670:intron 10.0%
!!! ATTTTTCTATACTTAAAAAT+CGG + chr6_4:2011-2030 Msa0968670:intron 10.0%
!! AGAAAAATAAAATTATTACA+TGG + chr6_4:2720-2739 Msa0968670:intron 10.0%
!!! ATTTTTTTTTTGTTTAGAAA+AGG + chr6_4:2983-3002 Msa0968670:intron 10.0%
!!! TATAAAATAATTTTAGAAGT+TGG + chr6_4:4985-5004 Msa0968670:intron 10.0%
!! AATGCTATTAAAATTAAATA+AGG - chr6_4:6282-6301 None:intergenic 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG + chr6_4:6605-6624 Msa0968670:intron 10.0%
!!! TATAAGTAAATTTTTTTTGT+AGG + chr6_4:6665-6684 Msa0968670:intron 10.0%
!!! ATAAGTAAATTTTTTTTGTA+GGG + chr6_4:6666-6685 Msa0968670:intron 10.0%
!! TTTCAATTTAATTACAAAAA+TGG + chr6_4:6974-6993 Msa0968670:intron 10.0%
!! ATATAAAACATAAAATTACA+TGG - chr6_4:7193-7212 None:intergenic 10.0%
!!! TAAATTTTGACAAATTTTCA+TGG + chr6_4:1241-1260 Msa0968670:CDS 15.0%
!!! AAATTTATCTTCGAATTTTA+AGG - chr6_4:1941-1960 None:intergenic 15.0%
!!! TTTTTTGCTTTTTTTTAGTA+TGG + chr6_4:2400-2419 Msa0968670:intron 15.0%
!!! TTTTTGCTTTTTTTTAGTAT+GGG + chr6_4:2401-2420 Msa0968670:intron 15.0%
!!! ATTTTCACAATCTAAATATT+AGG + chr6_4:2545-2564 Msa0968670:intron 15.0%
!! AACTCTACTTTAATATTATT+TGG + chr6_4:2855-2874 Msa0968670:CDS 15.0%
!! ACTCTACTTTAATATTATTT+GGG + chr6_4:2856-2875 Msa0968670:CDS 15.0%
!!! GGTAAAATTCTTTTTATATT+TGG + chr6_4:3192-3211 Msa0968670:CDS 15.0%
!!! AAAATTCTTTTTATATTTGG+AGG + chr6_4:3195-3214 Msa0968670:CDS 15.0%
!!! TGAATATTTAATTTGCATAT+TGG - chr6_4:3321-3340 None:intergenic 15.0%
!!! ATGATATTCTAAAAAATGAA+TGG + chr6_4:3763-3782 Msa0968670:CDS 15.0%
!!! TTTTAACCTTTTATTTTTCT+TGG + chr6_4:4350-4369 Msa0968670:intron 15.0%
!! AATAGAAAAAAATTGATTGT+AGG - chr6_4:4920-4939 None:intergenic 15.0%
!! AACATTCTATAATGAAAAAT+TGG + chr6_4:5326-5345 Msa0968670:intron 15.0%
!! TTCAAATTTGTATATATTGT+TGG + chr6_4:5458-5477 Msa0968670:intron 15.0%
!!! TTTTAAAAACAAACAAGAAA+TGG + chr6_4:6010-6029 Msa0968670:CDS 15.0%
!!! TATATATGACATTTCATTTT+AGG + chr6_4:6207-6226 Msa0968670:intron 15.0%
!!! ATATATGACATTTCATTTTA+GGG + chr6_4:6208-6227 Msa0968670:intron 15.0%
!! AAGCATAAATTAAACAAATT+TGG - chr6_4:6354-6373 None:intergenic 15.0%
!!! TTTTTCAACAATTTTTTTAC+AGG + chr6_4:6385-6404 Msa0968670:intron 15.0%
!!! AATTTTTGCGATATTTTTTT+CGG - chr6_4:6439-6458 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG - chr6_4:6474-6493 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG + chr6_4:6633-6652 Msa0968670:intron 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG + chr6_4:6634-6653 Msa0968670:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr6_4:6695-6714 Msa0968670:intron 15.0%
!! AAATTATACCATAAAATGAA+GGG - chr6_4:6769-6788 None:intergenic 15.0%
!!! TTTCTATATTTTTGTGTATT+TGG + chr6_4:6920-6939 Msa0968670:intron 15.0%
!! GAAAATATAACAAAAAATAC+AGG + chr6_4:7080-7099 Msa0968670:intron 15.0%
!!! TATAAAAAATGCAAATTTTG+TGG - chr6_4:7309-7328 None:intergenic 15.0%
!!! AGTACAATTCTTTTTCTTTT+TGG + chr6_4:214-233 Msa0968670:intron 20.0%
!!! TTAAGTTGTTTATCCAAATA+TGG + chr6_4:913-932 Msa0968670:intron 20.0%
!! TTTCAAAATGACCTTAATAA+TGG + chr6_4:1401-1420 Msa0968670:intron 20.0%
!! TGCTCTTAAAATATACTTAT+TGG - chr6_4:1573-1592 None:intergenic 20.0%
!! TAAGAGATTTACAAGAAAAA+AGG + chr6_4:1975-1994 Msa0968670:intron 20.0%
!!! TTTAAGTGCATATCTTTTAA+TGG + chr6_4:2159-2178 Msa0968670:intron 20.0%
!! GAAATTAAATTATGACATGT+TGG - chr6_4:2750-2769 None:intergenic 20.0%
!! TCTTTCATTTAAATCTCTAT+AGG + chr6_4:2768-2787 Msa0968670:intron 20.0%
!! CTCTACTTTAATATTATTTG+GGG + chr6_4:2857-2876 Msa0968670:CDS 20.0%
!! TCTACTTTAATATTATTTGG+GGG + chr6_4:2858-2877 Msa0968670:CDS 20.0%
!! TGAAAGATTATATTACTTCA+GGG + chr6_4:3122-3141 Msa0968670:intron 20.0%
!! TTCATCACAATATAACTAAA+CGG - chr6_4:3286-3305 None:intergenic 20.0%
!!! AATAAGCATAAAAGTTTTCA+AGG + chr6_4:3571-3590 Msa0968670:intron 20.0%
!!! ATTTTAAGTTCAAATGTCAT+TGG + chr6_4:3626-3645 Msa0968670:intron 20.0%
!! AATTTCATATTTGAAAACTG+AGG - chr6_4:4097-4116 None:intergenic 20.0%
!! AAACCTTGATATATATGAAA+TGG - chr6_4:4824-4843 None:intergenic 20.0%
!! GAAAATAACATATGACATAT+AGG - chr6_4:5306-5325 None:intergenic 20.0%
!! GAATGATTGGAATAAAATAA+GGG - chr6_4:5569-5588 None:intergenic 20.0%
!! AAAGTATGTTTATTGAATCA+TGG - chr6_4:5591-5610 None:intergenic 20.0%
!!! TTTAGGGTTAATTATGTTTT+TGG + chr6_4:6224-6243 Msa0968670:intron 20.0%
!!! AACAAAATTTATTTTAGCAG+GGG + chr6_4:6635-6654 Msa0968670:intron 20.0%
!!! ATAATTAACCCTTCATTTTA+TGG + chr6_4:6758-6777 Msa0968670:intron 20.0%
!! CAAATTATACCATAAAATGA+AGG - chr6_4:6770-6789 None:intergenic 20.0%
!!! ATTCAATATTAGCATTTTAC+AGG - chr6_4:6797-6816 None:intergenic 20.0%
!!! TAACAAAAAATACAGGTTTT+TGG + chr6_4:7087-7106 Msa0968670:intron 20.0%
!! TTCGTAATTAAATATGTAGA+AGG + chr6_4:7115-7134 Msa0968670:intron 20.0%
!!! TTTTTTTTTCTTCAGGATTT+TGG + chr6_4:7163-7182 Msa0968670:intron 20.0%
!! TATGATCAATTATGTTGTTA+AGG + chr6_4:7210-7229 Msa0968670:intron 20.0%
!! ATGATCAATTATGTTGTTAA+GGG + chr6_4:7211-7230 Msa0968670:intron 20.0%
!! TATTACTATTAGGACATATA+TGG + chr6_4:7556-7575 Msa0968670:three_prime_UTR 20.0%
!! ATTACTATTAGGACATATAT+GGG + chr6_4:7557-7576 Msa0968670:three_prime_UTR 20.0%
!! CTGTAATTGTAATTGAATTA+TGG + chr6_4:7763-7782 Msa0968670:three_prime_UTR 20.0%
! AGAAGAAGAATAAAGATGTT+TGG + chr6_4:151-170 Msa0968670:exon 25.0%
!! TGTGGTTATTACTAAGTTTT+TGG + chr6_4:454-473 Msa0968670:intron 25.0%
! TAATTACATACATAGGATCT+AGG - chr6_4:631-650 None:intergenic 25.0%
! AGATCCTATGTATGTAATTA+TGG + chr6_4:631-650 Msa0968670:intron 25.0%
! GATCCTATGTATGTAATTAT+GGG + chr6_4:632-651 Msa0968670:intron 25.0%
! ATTCCCATAATTACATACAT+AGG - chr6_4:638-657 None:intergenic 25.0%
! CAACATACTATTCATTTCAT+TGG + chr6_4:1211-1230 Msa0968670:intron 25.0%
! AGTTATGAATGAAATTCGAT+TGG - chr6_4:1538-1557 None:intergenic 25.0%
! TTTATTTGATATGGAGAGAA+AGG + chr6_4:1652-1671 Msa0968670:intron 25.0%
! ATTATATGAAGTGCATACAA+AGG - chr6_4:1814-1833 None:intergenic 25.0%
!!! ATTATTTCTCCTCTTTTTTC+TGG - chr6_4:1884-1903 None:intergenic 25.0%
! CAAGAAAAAAGGAAAAGAAA+AGG + chr6_4:1986-2005 Msa0968670:intron 25.0%
! GTAAGTATAACAACATAGAA+TGG - chr6_4:2135-2154 None:intergenic 25.0%
! AAAAGATATGCACTTAAATC+AGG - chr6_4:2157-2176 None:intergenic 25.0%
! ATTACATTTGCAAATGACAT+GGG - chr6_4:2338-2357 None:intergenic 25.0%
! TATTACATTTGCAAATGACA+TGG - chr6_4:2339-2358 None:intergenic 25.0%
!!! TTTTGTAGAAAGTTGATCTT+GGG + chr6_4:2508-2527 Msa0968670:intron 25.0%
! AAGGTTAGAAATCAAAAGTT+TGG + chr6_4:3002-3021 Msa0968670:intron 25.0%
!! ATCAAAAGTTTGGATTTTGA+CGG + chr6_4:3012-3031 Msa0968670:intron 25.0%
! AAGTAATATAATCTTTCAGG+AGG - chr6_4:3120-3139 None:intergenic 25.0%
! CTGAAGTAATATAATCTTTC+AGG - chr6_4:3123-3142 None:intergenic 25.0%
! CTGAAAGATTATATTACTTC+AGG + chr6_4:3121-3140 Msa0968670:intron 25.0%
! GAAAGATTATATTACTTCAG+GGG + chr6_4:3123-3142 Msa0968670:intron 25.0%
! TTTGCATATTGGAAATCAAT+AGG - chr6_4:3310-3329 None:intergenic 25.0%
! ATTCATTTCTTATATCCAGA+TGG + chr6_4:3336-3355 Msa0968670:intron 25.0%
!!! TTACTTTTATTAACTTCCTC+AGG - chr6_4:3606-3625 None:intergenic 25.0%
! TTCAAATGTCATTGGAAATT+TGG + chr6_4:3634-3653 Msa0968670:intron 25.0%
! CAGGAAAGTTAAAATTTGTA+AGG - chr6_4:3710-3729 None:intergenic 25.0%
! AAATAAAATGTTCACCTTGT+TGG - chr6_4:3826-3845 None:intergenic 25.0%
! TATAAGTGCAAAAGACTAAA+TGG - chr6_4:3941-3960 None:intergenic 25.0%
!! TATAACTCAGATTTTGTTCA+AGG + chr6_4:3957-3976 Msa0968670:intron 25.0%
! AAGAATTCAATGTAGATGAT+AGG + chr6_4:4656-4675 Msa0968670:CDS 25.0%
!!! AATGTGGTTTTAATGTATGA+TGG + chr6_4:4755-4774 Msa0968670:intron 25.0%
! CAACCATTTCATATATATCA+AGG + chr6_4:4818-4837 Msa0968670:intron 25.0%
!!! CTATTACTCATTTTTATCCT+AGG + chr6_4:4935-4954 Msa0968670:intron 25.0%
!!! TCATTTTTATCCTAGGATTT+GGG + chr6_4:4942-4961 Msa0968670:intron 25.0%
!!! AATTTTAGAAGTTGGAAAGT+TGG + chr6_4:4993-5012 Msa0968670:intron 25.0%
!!! TAAAAGTTGATGAATATTGC+AGG + chr6_4:5016-5035 Msa0968670:intron 25.0%
! GAAATCTTTGCAAATTGAAT+TGG - chr6_4:5150-5169 None:intergenic 25.0%
! ATTCAATTTGCAAAGATTTC+TGG + chr6_4:5150-5169 Msa0968670:intron 25.0%
!!! AAAGATTTCTGGTAGAAAAT+GGG + chr6_4:5161-5180 Msa0968670:intron 25.0%
! GTAACAGTTAAAGAAATTGA+GGG + chr6_4:5209-5228 Msa0968670:intron 25.0%
!! CACTTTTAATGTCTATACTA+CGG - chr6_4:5275-5294 None:intergenic 25.0%
! GTATATATTGTTGGAAAATC+AGG + chr6_4:5467-5486 Msa0968670:intron 25.0%
! TTCAGATCTTCCTTTATTAT+AGG + chr6_4:5535-5554 Msa0968670:intron 25.0%
! GGAATAAGTACCTATAATAA+AGG - chr6_4:5548-5567 None:intergenic 25.0%
! GGAATGATTGGAATAAAATA+AGG - chr6_4:5570-5589 None:intergenic 25.0%
! TTATTGAATCATGGAATGAT+TGG - chr6_4:5582-5601 None:intergenic 25.0%
!! GATTCTTTTCGAAAAAATCT+AGG + chr6_4:5783-5802 Msa0968670:CDS 25.0%
!! TTTCGAAAAAATCTAGGTTT+TGG + chr6_4:5789-5808 Msa0968670:CDS 25.0%
!!! AATGCCAAATTTTGTTATCA+GGG - chr6_4:5925-5944 None:intergenic 25.0%
! ACAAGAAATGGATAAAACAA+TGG + chr6_4:6022-6041 Msa0968670:CDS 25.0%
!!! TGTTTTAGATGATACACAAA+AGG + chr6_4:6184-6203 Msa0968670:intron 25.0%
! AAATAAGGACTAAACTTACA+AGG - chr6_4:6267-6286 None:intergenic 25.0%
! AAACAAATTTGGATTGAGTA+AGG - chr6_4:6343-6362 None:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG + chr6_4:6409-6428 Msa0968670:intron 25.0%
!! TGAAGGGTTAATTATGTTTT+TGG - chr6_4:6753-6772 None:intergenic 25.0%
!! ACAAAACTTTAAAAACAGCA+AGG - chr6_4:7014-7033 None:intergenic 25.0%
! AATCCTGAAGAAAAAAAAAC+TGG - chr6_4:7162-7181 None:intergenic 25.0%
! ACAAAGCTCATATTACTATT+AGG + chr6_4:7546-7565 Msa0968670:three_prime_UTR 25.0%
! TCATATTTGATCTGAACAAT+TGG - chr6_4:7657-7676 None:intergenic 25.0%
!! TCTAAAATCTCATTTCTGTA+TGG - chr6_4:7691-7710 None:intergenic 25.0%
!! ACATTTCAGATTCTTTGAAA+CGG + chr6_4:7711-7730 Msa0968670:three_prime_UTR 25.0%
! TTACAATTACAGTTAATGAC+TGG - chr6_4:7755-7774 None:intergenic 25.0%
!!! TTGTTTTTGTAGAGTGAAGA+AGG + chr6_4:307-326 Msa0968670:intron 30.0%
TAGAGTTTGCATTTCGTTTA+GGG - chr6_4:379-398 None:intergenic 30.0%
!!! CTAAGTTTTTGGCTTCTTTT+AGG + chr6_4:465-484 Msa0968670:intron 30.0%
TTTCTATAAGCTCTTCTGAA+CGG - chr6_4:739-758 None:intergenic 30.0%
ACTACTGATCTGTTATTCAT+TGG + chr6_4:993-1012 Msa0968670:intron 30.0%
CATTGAGAATAAGATGATAG+TGG + chr6_4:1035-1054 Msa0968670:CDS 30.0%
ATACTATTCATTTCATTGGC+AGG + chr6_4:1215-1234 Msa0968670:intron 30.0%
TTTCATTCATAACTGACGAT+AGG + chr6_4:1544-1563 Msa0968670:intron 30.0%
TGTTATATGATTCTCTGTGT+TGG + chr6_4:1620-1639 Msa0968670:intron 30.0%
AAACCATATATGAGAACAAC+AGG - chr6_4:1726-1745 None:intergenic 30.0%
!!! TTGCAAATTTTAACTGCATC+TGG - chr6_4:2045-2064 None:intergenic 30.0%
TTGCAAATACAAACCTATCT+CGG + chr6_4:2059-2078 Msa0968670:intron 30.0%
AAGCATAAGAGAATTGAGAT+AGG - chr6_4:2222-2241 None:intergenic 30.0%
! CTTGATAATAATTTGACACC+AGG + chr6_4:2239-2258 Msa0968670:intron 30.0%
TTACATTTGCAAATGACATG+GGG - chr6_4:2337-2356 None:intergenic 30.0%
! TGCATTTTCAATATTCCTAC+CGG - chr6_4:2480-2499 None:intergenic 30.0%
AGATCAACTTTCTACAAAAC+AGG - chr6_4:2507-2526 None:intergenic 30.0%
!! GTTTTGTAGAAAGTTGATCT+TGG + chr6_4:2507-2526 Msa0968670:intron 30.0%
! TTTGTAGAAAGTTGATCTTG+GGG + chr6_4:2509-2528 Msa0968670:intron 30.0%
! GATATGTTGACTATTCTGAT+AGG - chr6_4:2598-2617 None:intergenic 30.0%
TCAGAATAGTCAACATATCA+TGG + chr6_4:2599-2618 Msa0968670:intron 30.0%
GATATTTACATGCATGAAGA+AGG + chr6_4:2621-2640 Msa0968670:intron 30.0%
!! TCAAAAGTTTGGATTTTGAC+GGG + chr6_4:3013-3032 Msa0968670:intron 30.0%
TATATCATGTTGTTGTGAGT+AGG - chr6_4:3043-3062 None:intergenic 30.0%
CAGATTAAATTTCAGATGCA+TGG - chr6_4:3075-3094 None:intergenic 30.0%
TGCAAGGGAAATAACAAAAA+CGG + chr6_4:3537-3556 Msa0968670:intron 30.0%
! TCATTGGAAATTTGGAATGA+TGG + chr6_4:3642-3661 Msa0968670:intron 30.0%
! AACTTTCCTGTATACTTTTC+AGG + chr6_4:3720-3739 Msa0968670:intron 30.0%
TAATGATACGTAAACATGAC+AGG - chr6_4:3851-3870 None:intergenic 30.0%
AGTACTAAAATCCCACAATT+TGG + chr6_4:3991-4010 Msa0968670:intron 30.0%
AAGGAATTTCTTGTTGCATT+TGG + chr6_4:4243-4262 Msa0968670:CDS 30.0%
AGGAATTTCTTGTTGCATTT+GGG + chr6_4:4244-4263 Msa0968670:CDS 30.0%
TCACAGCCAAGAAAAATAAA+AGG - chr6_4:4359-4378 None:intergenic 30.0%
!!! TGTTTTTCAAGTATAGATCC+TGG - chr6_4:4451-4470 None:intergenic 30.0%
! CTAGATTTTGTATAGCAACA+GGG - chr6_4:4522-4541 None:intergenic 30.0%
! TTCTGAAAGGAAATCTTTGT+CGG + chr6_4:4561-4580 Msa0968670:CDS 30.0%
ATTAAAACCACATTAGAGCA+TGG - chr6_4:4749-4768 None:intergenic 30.0%
AGGAAATGAAGGAAACTAAT+AGG - chr6_4:4879-4898 None:intergenic 30.0%
!! CTCATTTTTATCCTAGGATT+TGG + chr6_4:4941-4960 Msa0968670:intron 30.0%
ATCATTAAAACCCAAATCCT+AGG - chr6_4:4955-4974 None:intergenic 30.0%
! GGAGCAGAATTTAATGTTTT+TGG + chr6_4:5088-5107 Msa0968670:intron 30.0%
!!! TAATGTTTTTGGTGAGCTTT+CGG + chr6_4:5099-5118 Msa0968670:intron 30.0%
!! CAAAGATTTCTGGTAGAAAA+TGG + chr6_4:5160-5179 Msa0968670:intron 30.0%
CGTAACAGTTAAAGAAATTG+AGG + chr6_4:5208-5227 Msa0968670:intron 30.0%
TGATTCTGCAATAACTTCTT+GGG - chr6_4:5245-5264 None:intergenic 30.0%
TTGATTCTGCAATAACTTCT+TGG - chr6_4:5246-5265 None:intergenic 30.0%
TCACTTCTCATCAAAGTAAT+TGG - chr6_4:5354-5373 None:intergenic 30.0%
! CCTGATGAATTTATGTTTTC+AGG - chr6_4:5849-5868 None:intergenic 30.0%
CCTGAAAACATAAATTCATC+AGG + chr6_4:5846-5865 Msa0968670:CDS 30.0%
!! GAATGCCAAATTTTGTTATC+AGG - chr6_4:5926-5945 None:intergenic 30.0%
GATAACAAAATTTGGCATTC+TGG + chr6_4:5926-5945 Msa0968670:CDS 30.0%
!!! GAGTGCAGAAATTTTTTGTA+GGG - chr6_4:6311-6330 None:intergenic 30.0%
!!! TGAGTGCAGAAATTTTTTGT+AGG - chr6_4:6312-6331 None:intergenic 30.0%
!!! TTTTGCGATATTTTTTTCGG+AGG - chr6_4:6436-6455 None:intergenic 30.0%
! CAAGTTTAGAACACTATGAA+CGG - chr6_4:6571-6590 None:intergenic 30.0%
! TACAAGGTTGCAATTTTGTA+GGG + chr6_4:6726-6745 Msa0968670:intron 30.0%
ATTGAATGTGTTAACTTAGC+AGG + chr6_4:6810-6829 Msa0968670:intron 30.0%
GAAAAAAAAACTGGCAAGTT+TGG - chr6_4:7153-7172 None:intergenic 30.0%
!!! TTGCCAGTTTTTTTTTCTTC+AGG + chr6_4:7156-7175 Msa0968670:intron 30.0%
! TGATATTTTGTCACCATACT+TGG + chr6_4:7346-7365 Msa0968670:intron 30.0%
! GATATTTTGTCACCATACTT+GGG + chr6_4:7347-7366 Msa0968670:intron 30.0%
ATGTTTAAGAAACCCAAGTA+TGG - chr6_4:7362-7381 None:intergenic 30.0%
TCTCGTAAACACAAGAAACT+TGG + chr6_4:178-197 Msa0968670:CDS 35.0%
AAGGAACTAGAAGTCCTATT+AGG + chr6_4:351-370 Msa0968670:CDS 35.0%
GTAGAGTTTGCATTTCGTTT+AGG - chr6_4:380-399 None:intergenic 35.0%
TTCAGCTTCATTCTTTGTGT+TGG + chr6_4:410-429 Msa0968670:intron 35.0%
TCAGCTTCATTCTTTGTGTT+GGG + chr6_4:411-430 Msa0968670:intron 35.0%
!!! CTTTGTGTTGGGTTGAATTT+TGG + chr6_4:422-441 Msa0968670:intron 35.0%
!!! TTTGGCTTCTTTTAGGATGA+TGG + chr6_4:472-491 Msa0968670:intron 35.0%
!!! TTGGCTTCTTTTAGGATGAT+GGG + chr6_4:473-492 Msa0968670:intron 35.0%
! GATTGCCAATTTTCTTCTAC+TGG + chr6_4:529-548 Msa0968670:CDS 35.0%
! GAAGTTTTCATAAGCTATCC+TGG - chr6_4:788-807 None:intergenic 35.0%
CATCTTATTCTCAATGACAC+AGG - chr6_4:1031-1050 None:intergenic 35.0%
!! GAGAATAAGATGATAGTGGT+TGG + chr6_4:1039-1058 Msa0968670:CDS 35.0%
!! AATAAGATGATAGTGGTTGG+TGG + chr6_4:1042-1061 Msa0968670:CDS 35.0%
!!! TGAGGGAACATTTCTAGTTT+TGG + chr6_4:1104-1123 Msa0968670:intron 35.0%
! AGAGCATCATGCCATTATTA+AGG - chr6_4:1415-1434 None:intergenic 35.0%
AATCCACCCTTAGTAAATTG+AGG + chr6_4:1482-1501 Msa0968670:intron 35.0%
TAGCAGCCTCAATTTACTAA+GGG - chr6_4:1491-1510 None:intergenic 35.0%
GAATCATATAACACCGTATG+AGG - chr6_4:1613-1632 None:intergenic 35.0%
AGGATGTTCTACAGGAATTT+AGG + chr6_4:1672-1691 Msa0968670:intron 35.0%
TGTCCTGTTGTTCTCATATA+TGG + chr6_4:1720-1739 Msa0968670:intron 35.0%
CACTTCATATAATCGATGAC+TGG + chr6_4:1821-1840 Msa0968670:intron 35.0%
! ACTGGCATAACGATGATTTT+TGG + chr6_4:1839-1858 Msa0968670:intron 35.0%
!!! CTCTTTTTTCTGGTTAACTC+GGG - chr6_4:1874-1893 None:intergenic 35.0%
!!! CCTCTTTTTTCTGGTTAACT+CGG - chr6_4:1875-1894 None:intergenic 35.0%
TAATTTGACACCAGGTTTCT+TGG + chr6_4:2247-2266 Msa0968670:intron 35.0%
AATTTGACACCAGGTTTCTT+GGG + chr6_4:2248-2267 Msa0968670:intron 35.0%
!!! CAGATATTTTGTCGATTCCT+GGG - chr6_4:2308-2327 None:intergenic 35.0%
ACTACTTGGCTAATCAAATC+AGG - chr6_4:2660-2679 None:intergenic 35.0%
! ATTTGATTAGCCAAGTAGTC+AGG + chr6_4:2661-2680 Msa0968670:intron 35.0%
CTGACCAAATATCTTGTTCT+TGG + chr6_4:2796-2815 Msa0968670:intron 35.0%
TCTGCCAAGAACAAGATATT+TGG - chr6_4:2803-2822 None:intergenic 35.0%
! GTATTCACTCGACTTTGAAA+CGG + chr6_4:3248-3267 Msa0968670:CDS 35.0%
TTTCTTATATCCAGATGGCA+TGG + chr6_4:3341-3360 Msa0968670:intron 35.0%
ACTAAGTGGTATATTACAGG+CGG + chr6_4:3430-3449 Msa0968670:CDS 35.0%
GGTAAAGAAATGAGAGACAT+GGG - chr6_4:3499-3518 None:intergenic 35.0%
AGGTAAAGAAATGAGAGACA+TGG - chr6_4:3500-3519 None:intergenic 35.0%
!! TTGTTGGTAGTGATAGAAGA+AGG - chr6_4:3810-3829 None:intergenic 35.0%
TTCTTCTATCACTACCAACA+AGG + chr6_4:3809-3828 Msa0968670:CDS 35.0%
! TCAGATTTTGTTCAAGGTAG+TGG + chr6_4:3963-3982 Msa0968670:intron 35.0%
! CAGATTTTGTTCAAGGTAGT+GGG + chr6_4:3964-3983 Msa0968670:intron 35.0%
! AATTTGGCCTTCTGGTTAAA+TGG + chr6_4:4007-4026 Msa0968670:intron 35.0%
TGAACTTCCATTTAACCAGA+AGG - chr6_4:4017-4036 None:intergenic 35.0%
! GAAGTTCACTAGACATGTTT+TGG + chr6_4:4029-4048 Msa0968670:intron 35.0%
GGAAAATTAAATCCTAGCGA+AGG - chr6_4:4076-4095 None:intergenic 35.0%
ATGATTTCCGTTGTATTAGC+AGG + chr6_4:4188-4207 Msa0968670:intron 35.0%
TGATTTCCGTTGTATTAGCA+GGG + chr6_4:4189-4208 Msa0968670:intron 35.0%
CTAAAACCCTGCTAATACAA+CGG - chr6_4:4198-4217 None:intergenic 35.0%
GGAATTTCTTGTTGCATTTG+GGG + chr6_4:4245-4264 Msa0968670:CDS 35.0%
GAATTTCTTGTTGCATTTGG+GGG + chr6_4:4246-4265 Msa0968670:CDS 35.0%
!!! CTGATTTGATGCCTCTTTTT+TGG - chr6_4:4274-4293 None:intergenic 35.0%
!! CAAAAAAGAGGCATCAAATC+AGG + chr6_4:4272-4291 Msa0968670:CDS 35.0%
!! TTATTTTTCTTGGCTGTGAC+AGG + chr6_4:4360-4379 Msa0968670:intron 35.0%
! AGAGTCATTTCTAAGTTGAG+TGG - chr6_4:4482-4501 None:intergenic 35.0%
! GCTAGATTTTGTATAGCAAC+AGG - chr6_4:4523-4542 None:intergenic 35.0%
!! CAATTAAACGTGGTTCTGAA+AGG + chr6_4:4548-4567 Msa0968670:CDS 35.0%
CATGATCAAATTGACTGTCA+TGG - chr6_4:4633-4652 None:intergenic 35.0%
ATGTAGATGATAGGATTGAC+AGG + chr6_4:4665-4684 Msa0968670:CDS 35.0%
! AGAACTTCTGTTTTACCTGA+GGG - chr6_4:4714-4733 None:intergenic 35.0%
! AAGAACTTCTGTTTTACCTG+AGG - chr6_4:4715-4734 None:intergenic 35.0%
ATCATAACCATGCTCTAATG+TGG + chr6_4:4739-4758 Msa0968670:intron 35.0%
! TCAAGGTTTGATTGTGCTTT+TGG + chr6_4:4835-4854 Msa0968670:intron 35.0%
TAATAGGCAGAAAAATCTCG+AGG - chr6_4:4863-4882 None:intergenic 35.0%
GTGCTTAACTTAGGAAATGA+AGG - chr6_4:4890-4909 None:intergenic 35.0%
GGATTGTATGTGCTTAACTT+AGG - chr6_4:4899-4918 None:intergenic 35.0%
!!! CTTTTTTTGTCGTCAAAGGA+GGG - chr6_4:5398-5417 None:intergenic 35.0%
!!! ACTTTTTTTGTCGTCAAAGG+AGG - chr6_4:5399-5418 None:intergenic 35.0%
!!! GTCACTTTTTTTGTCGTCAA+AGG - chr6_4:5402-5421 None:intergenic 35.0%
TATCTCAAGTATTAGCACCA+GGG - chr6_4:5424-5443 None:intergenic 35.0%
TTATCTCAAGTATTAGCACC+AGG - chr6_4:5425-5444 None:intergenic 35.0%
ACAACAAATCAAAATGACCC+TGG + chr6_4:5699-5718 Msa0968670:CDS 35.0%
!!! CTGTTCCTCCATATTGATTT+TGG - chr6_4:5748-5767 None:intergenic 35.0%
CAAAATCAATATGGAGGAAC+AGG + chr6_4:5746-5765 Msa0968670:CDS 35.0%
TCCTCCCTGATAACAAAATT+TGG + chr6_4:5918-5937 Msa0968670:CDS 35.0%
GACAATGTTAGATAGGTTGT+TGG - chr6_4:6117-6136 None:intergenic 35.0%
ATGTTCAAGCCTTACATTGT+CGG - chr6_4:6144-6163 None:intergenic 35.0%
!!! TGTTTTTGGTCCCTACAAAA+TGG + chr6_4:6238-6257 Msa0968670:intron 35.0%
AAGTAAGGACTAAACCTACA+AGG + chr6_4:6710-6729 Msa0968670:intron 35.0%
CTACAAAATTGCAACCTTGT+AGG - chr6_4:6727-6746 None:intergenic 35.0%
! CTACAAGGTTGCAATTTTGT+AGG + chr6_4:6725-6744 Msa0968670:intron 35.0%
ATAGAGTTGTGATCAATCCA+AGG - chr6_4:6901-6920 None:intergenic 35.0%
CAATTATGTTGTTAAGGGTG+AGG + chr6_4:7216-7235 Msa0968670:intron 35.0%
! AAACCTTTTCATGTGCAATG+AGG + chr6_4:7470-7489 Msa0968670:CDS 35.0%
!! TATATGGGAAGTGCATTTTG+AGG + chr6_4:7572-7591 Msa0968670:three_prime_UTR 35.0%
!! ATATGGGAAGTGCATTTTGA+GGG + chr6_4:7573-7592 Msa0968670:three_prime_UTR 35.0%
CATTAACACTGCATCTTTAG+AGG - chr6_4:7620-7639 None:intergenic 35.0%
ATGCAGTGTTAATGCATTAC+TGG + chr6_4:7626-7645 Msa0968670:three_prime_UTR 35.0%
GTAAACACAAGAAACTTGGC+AGG + chr6_4:182-201 Msa0968670:CDS 40.0%
CAACTTTCTGATACCACACA+AGG + chr6_4:332-351 Msa0968670:CDS 40.0%
! TTTCGTTTAGGGTGCCTAAT+AGG - chr6_4:368-387 None:intergenic 40.0%
!!! GAATTTTGGAACAGTGAGTG+TGG + chr6_4:436-455 Msa0968670:intron 40.0%
!!! TGGCTTCTTTTAGGATGATG+GGG + chr6_4:474-493 Msa0968670:intron 40.0%
!!! TTTTAGGATGATGGGGTTGA+AGG + chr6_4:481-500 Msa0968670:intron 40.0%
!! TTTAGGATGATGGGGTTGAA+GGG + chr6_4:482-501 Msa0968670:intron 40.0%
CAGGTCCAGTAGAAGAAAAT+TGG - chr6_4:537-556 None:intergenic 40.0%
GATGCACAGTTACTTATCTC+AGG - chr6_4:556-575 None:intergenic 40.0%
GAGATAAGTAACTGTGCATC+AGG + chr6_4:556-575 Msa0968670:CDS 40.0%
CATCAGGTAGTTCAGAGAAT+TGG + chr6_4:572-591 Msa0968670:CDS 40.0%
AGGTAGTTCAGAGAATTGGA+TGG + chr6_4:576-595 Msa0968670:CDS 40.0%
!! GATGGTGTTGTCAATTGCAA+GGG + chr6_4:594-613 Msa0968670:intron 40.0%
CATACATAGGATCTAGGAGT+AGG - chr6_4:625-644 None:intergenic 40.0%
GACATATCTATAAGCTCTCC+AGG + chr6_4:767-786 Msa0968670:intron 40.0%
CGTATGACGAAGACCATATT+TGG - chr6_4:929-948 None:intergenic 40.0%
GTATAGCTTAGATGACACAG+TGG - chr6_4:1268-1287 None:intergenic 40.0%
TTGCAAGCTGGAATCTGTAA+CGG - chr6_4:1309-1328 None:intergenic 40.0%
TTACAGATTCCAGCTTGCAA+GGG + chr6_4:1309-1328 Msa0968670:CDS 40.0%
TGATGCTCTCATCATAGACA+TGG + chr6_4:1426-1445 Msa0968670:intron 40.0%
GTAGCAGCCTCAATTTACTA+AGG - chr6_4:1492-1511 None:intergenic 40.0%
TGTCATGTTGATGCCTCATA+CGG + chr6_4:1597-1616 Msa0968670:intron 40.0%
CCGAGTTAACCAGAAAAAAG+AGG + chr6_4:1872-1891 Msa0968670:intron 40.0%
CAAATACAAACCTATCTCGG+AGG + chr6_4:2062-2081 Msa0968670:intron 40.0%
AAACCTATCTCGGAGGAAAA+TGG + chr6_4:2069-2088 Msa0968670:intron 40.0%
GGAGGAAAATGGAGAGTTTA+GGG + chr6_4:2080-2099 Msa0968670:intron 40.0%
ATTTGACACCAGGTTTCTTG+GGG + chr6_4:2249-2268 Msa0968670:intron 40.0%
!!! CCAGATATTTTGTCGATTCC+TGG - chr6_4:2309-2328 None:intergenic 40.0%
CCAGGAATCGACAAAATATC+TGG + chr6_4:2306-2325 Msa0968670:CDS 40.0%
CTTTGTCCTGATTCATGTTG+TGG + chr6_4:2360-2379 Msa0968670:intron 40.0%
AGAACTCCACAACATGAATC+AGG - chr6_4:2369-2388 None:intergenic 40.0%
TTACATGCATGAAGAAGGTG+TGG + chr6_4:2626-2645 Msa0968670:intron 40.0%
AGTTTGCCCTAACAGTTGTA+TGG - chr6_4:2839-2858 None:intergenic 40.0%
TTGATCTCAAGTCCTTGACA+TGG + chr6_4:2922-2941 Msa0968670:CDS 40.0%
TTATTCTTGACCATGCCATC+TGG - chr6_4:3354-3373 None:intergenic 40.0%
GATGGCATGGTCAAGAATAA+AGG + chr6_4:3354-3373 Msa0968670:intron 40.0%
! GTGTTTTATGTGGCACTAAG+TGG + chr6_4:3416-3435 Msa0968670:CDS 40.0%
GGCACTAAGTGGTATATTAC+AGG + chr6_4:3427-3446 Msa0968670:CDS 40.0%
! GCAGTTAGCGTTGAAAGAAA+AGG - chr6_4:3520-3539 None:intergenic 40.0%
TTCTTTCAACGCTAACTGCA+AGG + chr6_4:3521-3540 Msa0968670:intron 40.0%
TCTTTCAACGCTAACTGCAA+GGG + chr6_4:3522-3541 Msa0968670:intron 40.0%
! TTCAAGGTTTTTCTCACCTG+AGG + chr6_4:3587-3606 Msa0968670:intron 40.0%
! CCATGTCCTGAAAAGTATAC+AGG - chr6_4:3729-3748 None:intergenic 40.0%
!! CCTGTATACTTTTCAGGACA+TGG + chr6_4:3726-3745 Msa0968670:intron 40.0%
!! TTGGTAGTGATAGAAGAAGG+AGG - chr6_4:3807-3826 None:intergenic 40.0%
TAACCAGAAGGCCAAATTGT+GGG - chr6_4:4005-4024 None:intergenic 40.0%
TTAACCAGAAGGCCAAATTG+TGG - chr6_4:4006-4025 None:intergenic 40.0%
TACTGATGAAAACCTTCGCT+AGG + chr6_4:4061-4080 Msa0968670:intron 40.0%
ATTTGGGGGATCCAAAAAAG+AGG + chr6_4:4260-4279 Msa0968670:CDS 40.0%
AAGTATAGATCCTGGACCTT+TGG - chr6_4:4443-4462 None:intergenic 40.0%
AACAGGGTCGATAAAACGTT+GGG - chr6_4:4506-4525 None:intergenic 40.0%
CTAGCATCTGCAATTAAACG+TGG + chr6_4:4538-4557 Msa0968670:CDS 40.0%
TCTCTGTTCGTACAAGATTC+TGG + chr6_4:4586-4605 Msa0968670:CDS 40.0%
TGTCATGGAAGATGTTGGTA+GGG - chr6_4:4618-4637 None:intergenic 40.0%
TTGACTGTCATGGAAGATGT+TGG - chr6_4:4623-4642 None:intergenic 40.0%
TGATAGGATTGACAGGCATT+TGG + chr6_4:4672-4691 Msa0968670:CDS 40.0%
AGATGAAAGTTCTTTCCCTC+AGG + chr6_4:4696-4715 Msa0968670:CDS 40.0%
! GGGAAAAGTGGAGACTTTTT+AGG + chr6_4:5067-5086 Msa0968670:intron 40.0%
TGTCTTCCTGCATATACTTC+AGG + chr6_4:5665-5684 Msa0968670:intron 40.0%
GAGAGGAGCCAAAATCAATA+TGG + chr6_4:5737-5756 Msa0968670:CDS 40.0%
AGGAGCCAAAATCAATATGG+AGG + chr6_4:5740-5759 Msa0968670:CDS 40.0%
! CAATATGGAGGAACAGGTTT+TGG + chr6_4:5752-5771 Msa0968670:CDS 40.0%
!! GCCAAATTTTGTTATCAGGG+AGG - chr6_4:5922-5941 None:intergenic 40.0%
TGAATTACTGAGAGAGAAGC+TGG + chr6_4:6064-6083 Msa0968670:CDS 40.0%
TGTAAGGCTTGAACATGATG+TGG + chr6_4:6148-6167 Msa0968670:intron 40.0%
! ACATGATGTGGCTTTTCTGA+AGG + chr6_4:6160-6179 Msa0968670:intron 40.0%
!! TACAAGGTCGCCATTTTGTA+GGG - chr6_4:6251-6270 None:intergenic 40.0%
!! TTACAAGGTCGCCATTTTGT+AGG - chr6_4:6252-6271 None:intergenic 40.0%
! GTTCAGAAGTACACAATGAG+TGG - chr6_4:7253-7272 None:intergenic 40.0%
!!! GCAATCTGTTTTGACTGCAT+AGG + chr6_4:7385-7404 Msa0968670:intron 40.0%
CAAACAGAGACTGCAATCAA+TGG + chr6_4:7424-7443 Msa0968670:CDS 40.0%
TGCACATGAAAAGGTTTCCT+GGG - chr6_4:7467-7486 None:intergenic 40.0%
TTGCACATGAAAAGGTTTCC+TGG - chr6_4:7468-7487 None:intergenic 40.0%
ACACCTCATTGCACATGAAA+AGG - chr6_4:7476-7495 None:intergenic 40.0%
! GAGCTTTGTGTCATCATTTC+TGG - chr6_4:7535-7554 None:intergenic 40.0%
!! AGGACTTCTAGTTCCTTGTG+TGG - chr6_4:348-367 None:intergenic 45.0%
!! GGATGGTGTTGTCAATTGCA+AGG + chr6_4:593-612 Msa0968670:intron 45.0%
!! ATAGTGGTTGGTGGTGAATC+TGG + chr6_4:1051-1070 Msa0968670:CDS 45.0%
!! GTTGGTGGTGAATCTGGAAA+TGG + chr6_4:1057-1076 Msa0968670:CDS 45.0%
TGGATTGTTAGACGATGTGC+AGG + chr6_4:1077-1096 Msa0968670:CDS 45.0%
GTTACAGATTCCAGCTTGCA+AGG + chr6_4:1308-1327 Msa0968670:CDS 45.0%
AAACTATGACCCTTGCAAGC+TGG - chr6_4:1321-1340 None:intergenic 45.0%
AGCTTGCAAGGGTCATAGTT+TGG + chr6_4:1320-1339 Msa0968670:CDS 45.0%
CAGCCTCAATTTACTAAGGG+TGG - chr6_4:1488-1507 None:intergenic 45.0%
GGAGAGAAAGGATGTTCTAC+AGG + chr6_4:1664-1683 Msa0968670:intron 45.0%
! TCTCCATTTTCCTCCGAGAT+AGG - chr6_4:2075-2094 None:intergenic 45.0%
CGGAGGAAAATGGAGAGTTT+AGG + chr6_4:2079-2098 Msa0968670:intron 45.0%
TTTGACACCAGGTTTCTTGG+GGG + chr6_4:2250-2269 Msa0968670:intron 45.0%
!! AAAAAGGCACTCCTCATTGG+AGG + chr6_4:2273-2292 Msa0968670:CDS 45.0%
!! AAAAGGCACTCCTCATTGGA+GGG + chr6_4:2274-2293 Msa0968670:CDS 45.0%
TGGTCACTCATGGAAGCAAA+GGG + chr6_4:2447-2466 Msa0968670:CDS 45.0%
TTCATGTCTGCCTGACTACT+TGG - chr6_4:2674-2693 None:intergenic 45.0%
CAGTGGCCATACAACTGTTA+GGG + chr6_4:2830-2849 Msa0968670:CDS 45.0%
TTGGGGGAGAAGATTGCAAA+AGG + chr6_4:2874-2893 Msa0968670:CDS 45.0%
AACACTTACGTGCAGTGAAG+TGG - chr6_4:2951-2970 None:intergenic 45.0%
TCTTTCAGGAGGTAGTACGA+GGG - chr6_4:3109-3128 None:intergenic 45.0%
ATCTTTCAGGAGGTAGTACG+AGG - chr6_4:3110-3129 None:intergenic 45.0%
ACGTGGTTGAATCTTGGAGA+AGG - chr6_4:3156-3175 None:intergenic 45.0%
TTCTCCAAGATTCAACCACG+TGG + chr6_4:3155-3174 Msa0968670:CDS 45.0%
CATCATAAAGAGATGCCACG+TGG - chr6_4:3173-3192 None:intergenic 45.0%
CACGTGGCATCTCTTTATGA+TGG + chr6_4:3171-3190 Msa0968670:CDS 45.0%
! TGGTCAAGAATAAAGGTGCG+TGG + chr6_4:3361-3380 Msa0968670:CDS 45.0%
! GGTTGCTGTGGTGTTTTATG+TGG + chr6_4:3406-3425 Msa0968670:CDS 45.0%
AAGTGGTATATTACAGGCGG+TGG + chr6_4:3433-3452 Msa0968670:CDS 45.0%
GTAGTGATAGAAGAAGGAGG+CGG - chr6_4:3804-3823 None:intergenic 45.0%
! AATCCCACAATTTGGCCTTC+TGG + chr6_4:3999-4018 Msa0968670:intron 45.0%
!! GTATTAGCAGGGTTTTAGCC+TGG + chr6_4:4200-4219 Msa0968670:intron 45.0%
! TTTTTCTTGGCTGTGACAGG+TGG + chr6_4:4363-4382 Msa0968670:intron 45.0%
AGACAACCGACTAGTACCAA+AGG + chr6_4:4424-4443 Msa0968670:CDS 45.0%
CAACAGGGTCGATAAAACGT+TGG - chr6_4:4507-4526 None:intergenic 45.0%
CTGTCATGGAAGATGTTGGT+AGG - chr6_4:4619-4638 None:intergenic 45.0%
GCAGGAGTTTGTGAGAGATT+AGG + chr6_4:5034-5053 Msa0968670:intron 45.0%
! AGAAGTGACCCTGATGATGA+GGG + chr6_4:5366-5385 Msa0968670:intron 45.0%
GACGACAAAAAAAGTGACCC+TGG + chr6_4:5404-5423 Msa0968670:intron 45.0%
TCGTGTGCATCTGATATCCA+GGG - chr6_4:5719-5738 None:intergenic 45.0%
!! AGGAACAGGTTTTGGCATCT+GGG + chr6_4:5760-5779 Msa0968670:CDS 45.0%
!!! TCTAGGTTTTGGAAACCTCG+TGG + chr6_4:5800-5819 Msa0968670:CDS 45.0%
CTCGTGGTAGAAAGTGATCA+CGG + chr6_4:5816-5835 Msa0968670:CDS 45.0%
TCGTGGTAGAAAGTGATCAC+GGG + chr6_4:5817-5836 Msa0968670:CDS 45.0%
! TGGCATTCTGGAAGCACAAT+TGG + chr6_4:5938-5957 Msa0968670:CDS 45.0%
TTACTGAGAGAGAAGCTGGT+CGG + chr6_4:6068-6087 Msa0968670:CDS 45.0%
TGCAGAGTTAGCTCAAGAAG+AGG + chr6_4:6091-6110 Msa0968670:CDS 45.0%
CGGAGTGGACAATGTTAGAT+AGG - chr6_4:6124-6143 None:intergenic 45.0%
TTGTCCACTCCGACAATGTA+AGG + chr6_4:6132-6151 Msa0968670:intron 45.0%
CAGGAATTGCACTCTACAAG+AGG + chr6_4:6829-6848 Msa0968670:intron 45.0%
TCTACAAGAGGAGTTCTTGC+AGG + chr6_4:6841-6860 Msa0968670:intron 45.0%
TCCAATTGCAGGTACATCCT+TGG + chr6_4:6881-6900 Msa0968670:intron 45.0%
TCCAAGGATGTACCTGCAAT+TGG - chr6_4:6885-6904 None:intergenic 45.0%
TGTTAAGGGTGAGGAATCTG+AGG + chr6_4:7225-7244 Msa0968670:intron 45.0%
TGAAAAGGTTTCCTGGGAGT+AGG - chr6_4:7461-7480 None:intergenic 45.0%
! GTGCAATGAGGTGTTCTTGA+TGG + chr6_4:7482-7501 Msa0968670:exon 45.0%
!! AAAATATAATTTATTTGATA+TGG + chr6_4:1643-1662 Msa0968670:intron 5.0%
!!! TTAATATTTTTTTTTTCTTT+TGG + chr6_4:1787-1806 Msa0968670:intron 5.0%
AGGGTCAAGTGGTCATTCTG+AGG + chr6_4:501-520 Msa0968670:CDS 50.0%
ATCTGTAACGGCAGGCTACT+TGG - chr6_4:1297-1316 None:intergenic 50.0%
AAGCTGGAATCTGTAACGGC+AGG - chr6_4:1305-1324 None:intergenic 50.0%
! CCTTTTTCCCCCAAGAAACC+TGG - chr6_4:2260-2279 None:intergenic 50.0%
CCAGGTTTCTTGGGGGAAAA+AGG + chr6_4:2257-2276 Msa0968670:intron 50.0%
!! GGGAAAAAGGCACTCCTCAT+TGG + chr6_4:2270-2289 Msa0968670:CDS 50.0%
! GGTCTGTTTTCCCTCCAATG+AGG - chr6_4:2287-2306 None:intergenic 50.0%
ATTGGAGGGAAAACAGACCC+AGG + chr6_4:2288-2307 Msa0968670:CDS 50.0%
TTCCATGAGTGACCAGCACT+CGG - chr6_4:2442-2461 None:intergenic 50.0%
CTGGTCACTCATGGAAGCAA+AGG + chr6_4:2446-2465 Msa0968670:CDS 50.0%
GGAAGCAAAGGGAGACATAC+CGG + chr6_4:2458-2477 Msa0968670:CDS 50.0%
GCAGTGGCCATACAACTGTT+AGG + chr6_4:2829-2848 Msa0968670:CDS 50.0%
GGGGAGAAGATTGCAAAAGG+AGG + chr6_4:2877-2896 Msa0968670:CDS 50.0%
GTGAAGTGGAAGCCATGTCA+AGG - chr6_4:2937-2956 None:intergenic 50.0%
GATGCCACGTGGTTGAATCT+TGG - chr6_4:3162-3181 None:intergenic 50.0%
TTCCATCCATCACCAAGAGC+TGG + chr6_4:3385-3404 Msa0968670:CDS 50.0%
!! AACCAGCTCTTGGTGATGGA+TGG - chr6_4:3390-3409 None:intergenic 50.0%
ATATTACAGGCGGTGGAAGC+AGG + chr6_4:3440-3459 Msa0968670:CDS 50.0%
! CCTTTTCCTTGTGCTGCACA+AGG - chr6_4:4227-4246 None:intergenic 50.0%
CCTTGTGCAGCACAAGGAAA+AGG + chr6_4:4224-4243 Msa0968670:CDS 50.0%
! AGTCGGTTGTCTTCTGGAAG+CGG - chr6_4:4416-4435 None:intergenic 50.0%
GGTACTAGTCGGTTGTCTTC+TGG - chr6_4:4422-4441 None:intergenic 50.0%
CCTGGACCTTTGGTACTAGT+CGG - chr6_4:4433-4452 None:intergenic 50.0%
! GAGAAGTGACCCTGATGATG+AGG + chr6_4:5365-5384 Msa0968670:intron 50.0%
! GAAGTGACCCTGATGATGAG+GGG + chr6_4:5367-5386 Msa0968670:intron 50.0%
TGGAAAATCAGGCGATGTCG+TGG + chr6_4:5478-5497 Msa0968670:intron 50.0%
CTGCTGCCTGAAGTATATGC+AGG - chr6_4:5674-5693 None:intergenic 50.0%
CTCGTGTGCATCTGATATCC+AGG - chr6_4:5720-5739 None:intergenic 50.0%
GGATATCAGATGCACACGAG+AGG + chr6_4:5720-5739 Msa0968670:CDS 50.0%
!! GAGGAACAGGTTTTGGCATC+TGG + chr6_4:5759-5778 Msa0968670:CDS 50.0%
!! GGAACAGGTTTTGGCATCTG+GGG + chr6_4:5761-5780 Msa0968670:CDS 50.0%
CGTGATCACTTTCTACCACG+AGG - chr6_4:5818-5837 None:intergenic 50.0%
AACAATGGCTGACACGCTAC+AGG + chr6_4:6037-6056 Msa0968670:CDS 50.0%
CAAGCCTTACATTGTCGGAG+TGG - chr6_4:6139-6158 None:intergenic 50.0%
TTCTTGCAGGAGAAAGAGCC+AGG + chr6_4:6854-6873 Msa0968670:intron 50.0%
TCTTGCAGGAGAAAGAGCCA+GGG + chr6_4:6855-6874 Msa0968670:intron 50.0%
TACCTGCAATTGGAATGCCC+TGG - chr6_4:6875-6894 None:intergenic 50.0%
AAAATCGAGCACCTACTCCC+AGG + chr6_4:7447-7466 Msa0968670:CDS 50.0%
!! TGGGAAGTGCATTTTGAGGG+TGG + chr6_4:7576-7595 Msa0968670:three_prime_UTR 50.0%
GATGGGGTTGAAGGGTCAAG+TGG + chr6_4:490-509 Msa0968670:CDS 55.0%
AGACGATGTGCAGGTGAGTG+AGG + chr6_4:1086-1105 Msa0968670:intron 55.0%
GACGATGTGCAGGTGAGTGA+GGG + chr6_4:1087-1106 Msa0968670:intron 55.0%
TTGACACAGAGACCGAGTGC+TGG + chr6_4:2427-2446 Msa0968670:CDS 55.0%
GCAAAGGGAGACATACCGGT+AGG + chr6_4:2462-2481 Msa0968670:intron 55.0%
TCTTGGCAGATTGCTCGCAG+TGG + chr6_4:2813-2832 Msa0968670:intron 55.0%
CAGCAACCAGCTCTTGGTGA+TGG - chr6_4:3394-3413 None:intergenic 55.0%
TCACCAAGAGCTGGTTGCTG+TGG + chr6_4:3394-3413 Msa0968670:CDS 55.0%
ACACCACAGCAACCAGCTCT+TGG - chr6_4:3400-3419 None:intergenic 55.0%
CCGACTAGTACCAAAGGTCC+AGG + chr6_4:4430-4449 Msa0968670:CDS 55.0%
GGCTAAGCCCCTCATCATCA+GGG - chr6_4:5377-5396 None:intergenic 55.0%
! AGCCAGGGCATTCCAATTGC+AGG + chr6_4:6870-6889 Msa0968670:intron 55.0%
TGAGGGTGGCGATGAAGACT+TGG + chr6_4:7590-7609 Msa0968670:three_prime_UTR 55.0%
!! GACCGAGTGCTGGTCACTCA+TGG + chr6_4:2437-2456 Msa0968670:CDS 60.0%
CCTTGTGCTGCACAAGGACC+AGG - chr6_4:4221-4240 None:intergenic 60.0%
CCTGGTCCTTGTGCAGCACA+AGG + chr6_4:4218-4237 Msa0968670:CDS 60.0%
GGGCTAAGCCCCTCATCATC+AGG - chr6_4:5378-5397 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 62 7887 62 ID=Msa0968670;Name=Msa0968670
chr6_4 mRNA 62 7887 62 ID=Msa0968670-mRNA-1;Parent=Msa0968670;Name=Msa0968670-mRNA-1;_AED=0.10;_eAED=0.10;_QI=104|0.85|0.86|1|0.92|0.93|15|397|659
chr6_4 exon 62 203 62 ID=Msa0968670-mRNA-1:exon:0;Parent=Msa0968670-mRNA-1
chr6_4 exon 319 400 319 ID=Msa0968670-mRNA-1:exon:1;Parent=Msa0968670-mRNA-1
chr6_4 exon 487 597 487 ID=Msa0968670-mRNA-1:exon:2;Parent=Msa0968670-mRNA-1
chr6_4 exon 1021 1098 1021 ID=Msa0968670-mRNA-1:exon:3;Parent=Msa0968670-mRNA-1
chr6_4 exon 1237 1341 1237 ID=Msa0968670-mRNA-1:exon:4;Parent=Msa0968670-mRNA-1
chr6_4 exon 2261 2327 2261 ID=Msa0968670-mRNA-1:exon:5;Parent=Msa0968670-mRNA-1
chr6_4 exon 2418 2479 2418 ID=Msa0968670-mRNA-1:exon:6;Parent=Msa0968670-mRNA-1
chr6_4 exon 2822 2961 2822 ID=Msa0968670-mRNA-1:exon:7;Parent=Msa0968670-mRNA-1
chr6_4 exon 3143 3269 3143 ID=Msa0968670-mRNA-1:exon:8;Parent=Msa0968670-mRNA-1
chr6_4 exon 3355 3469 3355 ID=Msa0968670-mRNA-1:exon:9;Parent=Msa0968670-mRNA-1
chr6_4 exon 3742 3830 3742 ID=Msa0968670-mRNA-1:exon:10;Parent=Msa0968670-mRNA-1
chr6_4 exon 4210 4293 4210 ID=Msa0968670-mRNA-1:exon:11;Parent=Msa0968670-mRNA-1
chr6_4 exon 4382 4717 4382 ID=Msa0968670-mRNA-1:exon:12;Parent=Msa0968670-mRNA-1
chr6_4 exon 5687 6148 5687 ID=Msa0968670-mRNA-1:exon:13;Parent=Msa0968670-mRNA-1
chr6_4 exon 7407 7887 7407 ID=Msa0968670-mRNA-1:exon:14;Parent=Msa0968670-mRNA-1
chr6_4 five_prime_UTR 62 165 62 ID=Msa0968670-mRNA-1:five_prime_utr;Parent=Msa0968670-mRNA-1
chr6_4 CDS 166 203 166 ID=Msa0968670-mRNA-1:cds;Parent=Msa0968670-mRNA-1
chr6_4 CDS 319 400 319 ID=Msa0968670-mRNA-1:cds;Parent=Msa0968670-mRNA-1
chr6_4 CDS 487 597 487 ID=Msa0968670-mRNA-1:cds;Parent=Msa0968670-mRNA-1
chr6_4 CDS 1021 1098 1021 ID=Msa0968670-mRNA-1:cds;Parent=Msa0968670-mRNA-1
chr6_4 CDS 1237 1341 1237 ID=Msa0968670-mRNA-1:cds;Parent=Msa0968670-mRNA-1
chr6_4 CDS 2261 2327 2261 ID=Msa0968670-mRNA-1:cds;Parent=Msa0968670-mRNA-1
chr6_4 CDS 2418 2479 2418 ID=Msa0968670-mRNA-1:cds;Parent=Msa0968670-mRNA-1
chr6_4 CDS 2822 2961 2822 ID=Msa0968670-mRNA-1:cds;Parent=Msa0968670-mRNA-1
chr6_4 CDS 3143 3269 3143 ID=Msa0968670-mRNA-1:cds;Parent=Msa0968670-mRNA-1
chr6_4 CDS 3355 3469 3355 ID=Msa0968670-mRNA-1:cds;Parent=Msa0968670-mRNA-1
chr6_4 CDS 3742 3830 3742 ID=Msa0968670-mRNA-1:cds;Parent=Msa0968670-mRNA-1
chr6_4 CDS 4210 4293 4210 ID=Msa0968670-mRNA-1:cds;Parent=Msa0968670-mRNA-1
chr6_4 CDS 4382 4717 4382 ID=Msa0968670-mRNA-1:cds;Parent=Msa0968670-mRNA-1
chr6_4 CDS 5687 6148 5687 ID=Msa0968670-mRNA-1:cds;Parent=Msa0968670-mRNA-1
chr6_4 CDS 7407 7490 7407 ID=Msa0968670-mRNA-1:cds;Parent=Msa0968670-mRNA-1
chr6_4 three_prime_UTR 7491 7887 7491 ID=Msa0968670-mRNA-1:three_prime_utr;Parent=Msa0968670-mRNA-1
Gene Sequence

>Msa0968670

ATGTTTGGATTCTCTCGTAAACACAAGAAACTTGGCAGAGTGAAGAAGGTTCAACTTTCTGATACCACACAAGGAACTAGAAGTCCTATTAGGCACCCTAAACGAAATGCAAACTCTACTGATGATGGGGTTGAAGGGTCAAGTGGTCATTCTGAGGAAATTGATTGCCAATTTTCTTCTACTGGACCTGAGATAAGTAACTGTGCATCAGGTAGTTCAGAGAATTGGATGCATGCAGCCTGTGTCATTGAGAATAAGATGATAGTGGTTGGTGGTGAATCTGGAAATGGATTGTTAGACGATGTGCAGGTTCTAAATTTTGACAAATTTTCATGGACCACTGTGTCATCTAAGCTATACTTGTCACCAAGTAGCCTGCCGTTACAGATTCCAGCTTGCAAGGGTCATAGTTTGGTTTCTTGGGGGAAAAAGGCACTCCTCATTGGAGGGAAAACAGACCCAGGAATCGACAAAATATCTGTATGGGCGTTTGACACAGAGACCGAGTGCTGGTCACTCATGGAAGCAAAGGGAGACATACCGATTGCTCGCAGTGGCCATACAACTGTTAGGGCAAACTCTACTTTAATATTATTTGGGGGAGAAGATTGCAAAAGGAGGAAACTGAATGATCTACATATGTTTGATCTCAAGTCCTTGACATGGCTTCCACTTCACTGCACGGGAACAGCACCTTCTCCAAGATTCAACCACGTGGCATCTCTTTATGATGGTAAAATTCTTTTTATATTTGGAGGAGCAGCAAAATCTAAGACATTGAATGATTTGTATTCACTCGACTTTGAAACGATGGCATGGTCAAGAATAAAGGTGCGTGGTTTCCATCCATCACCAAGAGCTGGTTGCTGTGGTGTTTTATGTGGCACTAAGTGGTATATTACAGGCGGTGGAAGCAGGAAAAAACGACATGGAGAGACTTTGATATATGATATTCTAAAAAATGAATGGTCTGTAGAAATTGCACCGCCTCCTTCTTCTATCACTACCAACAAGGGTTTTAGCCTGGTCCTTGTGCAGCACAAGGAAAAGGAATTTCTTGTTGCATTTGGGGGATCCAAAAAAGAGGCATCAAATCAGGTGGAAGTGTTGAAAACAGAAAAAAATGAATCCGCTTCCAGAAGACAACCGACTAGTACCAAAGGTCCAGGATCTATACTTGAAAAACATTCGTCTTCCACTCAACTTAGAAATGACTCTTCCCAACGTTTTATCGACCCTGTTGCTATACAAAATCTAGCATCTGCAATTAAACGTGGTTCTGAAAGGAAATCTTTGTCGGAATCTCTGTTCGTACAAGATTCTGGCTCTCTCCCTACCAACATCTTCCATGACAGTCAATTTGATCATGATGAAGAATTCAATGTAGATGATAGGATTGACAGGCATTTGGAAGATGAAAGTTCTTTCCCTCAGGCAGCAGATCACACAACAAATCAAAATGACCCTGGATATCAGATGCACACGAGAGGAGCCAAAATCAATATGGAGGAACAGGTTTTGGCATCTGGGGATTCTTTTCGAAAAAATCTAGGTTTTGGAAACCTCGTGGTAGAAAGTGATCACGGGTCATTGCCTGAAAACATAAATTCATCAGGATCACTGTCTACTACTTCAAATATATATAATTATTATGAAACTAAAGTTTCCTCCCTGATAACAAAATTTGGCATTCTGGAAGCACAATTGGCAGCTTCATTAGCAAGCAAAGAAGCTGCTGAGAAAAATCTAGCATCTGCTTTTAAAAACAAACAAGAAATGGATAAAACAATGGCTGACACGCTACAGGAAATTGAATTACTGAGAGAGAAGCTGGTCGGTGCAGAGTTAGCTCAAGAAGAGGCCAACAACCTATCTAACATTGTCCACTCCGACAATGTTGAAGTTTTTCATCTCAAACAGAGACTGCAATCAATGGAAAATCGAGCACCTACTCCCAGGAAACCTTTTCATGTGCAATGA
Protein sequence

>Msa0968670

MFGFSRKHKKLGRVKKVQLSDTTQGTRSPIRHPKRNANSTDDGVEGSSGHSEEIDCQFSSTGPEISNCASGSSENWMHAACVIENKMIVVGGESGNGLLDDVQVLNFDKFSWTTVSSKLYLSPSSLPLQIPACKGHSLVSWGKKALLIGGKTDPGIDKISVWAFDTETECWSLMEAKGDIPIARSGHTTVRANSTLILFGGEDCKRRKLNDLHMFDLKSLTWLPLHCTGTAPSPRFNHVASLYDGKILFIFGGAAKSKTLNDLYSLDFETMAWSRIKVRGFHPSPRAGCCGVLCGTKWYITGGGSRKKRHGETLIYDILKNEWSVEIAPPPSSITTNKGFSLVLVQHKEKEFLVAFGGSKKEASNQVEVLKTEKNESASRRQPTSTKGPGSILEKHSSSTQLRNDSSQRFIDPVAIQNLASAIKRGSERKSLSESLFVQDSGSLPTNIFHDSQFDHDEEFNVDDRIDRHLEDESSFPQAADHTTNQNDPGYQMHTRGAKINMEEQVLASGDSFRKNLGFGNLVVESDHGSLPENINSSGSLSTTSNIYNYYETKVSSLITKFGILEAQLAASLASKEAAEKNLASAFKNKQEMDKTMADTLQEIELLREKLVGAELAQEEANNLSNIVHSDNVEVFHLKQRLQSMENRAPTPRKPFHVQ*