Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118400 | XP_024631146.1 | 46.316 | 190 | 92 | 1 | 6 | 185 | 23 | 212 | 4.95e-43 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118400 | A0A396JLY5 | 46.316 | 190 | 92 | 1 | 6 | 185 | 26 | 215 | 3.00e-43 | 153 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0118400 | 0.869773 | 2.408259e-66 | -8.615850e-47 |
| Msa0005050 | Msa0118400 | 0.825672 | 4.124935e-54 | -8.615850e-47 |
| Msa0016120 | Msa0118400 | 0.839439 | 1.583148e-57 | -8.615850e-47 |
| Msa0017510 | Msa0118400 | 0.829160 | 6.011939e-55 | -8.615850e-47 |
| Msa0022640 | Msa0118400 | 0.881132 | 3.092908e-70 | -8.615850e-47 |
| Msa0036430 | Msa0118400 | 0.836335 | 9.936976e-57 | -8.615850e-47 |
| Msa0040450 | Msa0118400 | 0.803503 | 3.379538e-49 | -8.615850e-47 |
| Msa0050040 | Msa0118400 | 0.828302 | 9.693656e-55 | -8.615850e-47 |
| Msa0053110 | Msa0118400 | 0.835322 | 1.794817e-56 | -8.615850e-47 |
| Msa0072810 | Msa0118400 | 0.825818 | 3.810230e-54 | -8.615850e-47 |
| Msa0079770 | Msa0118400 | 0.812538 | 4.031440e-51 | -8.615850e-47 |
| Msa0084500 | Msa0118400 | 0.829576 | 4.764174e-55 | -8.615850e-47 |
| Msa0098440 | Msa0118400 | 0.836703 | 8.012979e-57 | -8.615850e-47 |
| Msa0102990 | Msa0118400 | 0.828959 | 6.724769e-55 | -8.615850e-47 |
| Msa0103000 | Msa0118400 | 0.847081 | 1.449254e-59 | -8.615850e-47 |
| Msa0106790 | Msa0118400 | 0.890236 | 1.182280e-73 | -8.615850e-47 |
| Msa0110970 | Msa0118400 | 0.836248 | 1.046049e-56 | -8.615850e-47 |
| Msa0118380 | Msa0118400 | 0.899524 | 1.819328e-77 | -8.615850e-47 |
| Msa0118400 | Msa0127440 | 0.816086 | 6.629139e-52 | -8.615850e-47 |
| Msa0118400 | Msa0130570 | 0.827689 | 1.362158e-54 | -8.615850e-47 |
| Msa0118400 | Msa0134040 | 0.806059 | 9.885666e-50 | -8.615850e-47 |
| Msa0118400 | Msa0140570 | 0.802028 | 6.813863e-49 | -8.615850e-47 |
| Msa0118400 | Msa0141600 | 0.839935 | 1.176606e-57 | -8.615850e-47 |
| Msa0118400 | Msa0147560 | 0.855875 | 4.702559e-62 | -8.615850e-47 |
| Msa0118400 | Msa0153420 | 0.843587 | 1.278484e-58 | -8.615850e-47 |
| Msa0118400 | Msa0157290 | 0.828924 | 6.857529e-55 | -8.615850e-47 |
| Msa0118400 | Msa0161680 | 0.884129 | 2.494715e-71 | -8.615850e-47 |
| Msa0118400 | Msa0173990 | 0.818802 | 1.620568e-52 | -8.615850e-47 |
| Msa0118400 | Msa0176470 | 0.815147 | 1.073162e-51 | -8.615850e-47 |
| Msa0118400 | Msa0192200 | 0.814030 | 1.896006e-51 | -8.615850e-47 |
| Msa0118400 | Msa0196150 | 0.814620 | 1.404131e-51 | -8.615850e-47 |
| Msa0118400 | Msa0203030 | 0.856286 | 3.566122e-62 | -8.615850e-47 |
| Msa0118400 | Msa0218780 | 0.800985 | 1.114462e-48 | -8.615850e-47 |
| Msa0118400 | Msa0219190 | 0.832166 | 1.104010e-55 | -8.615850e-47 |
| Msa0118400 | Msa0219310 | 0.801986 | 6.948800e-49 | -8.615850e-47 |
| Msa0118400 | Msa0235890 | 0.805246 | 1.464353e-49 | -8.615850e-47 |
| Msa0118400 | Msa0242270 | 0.841607 | 4.287966e-58 | -8.615850e-47 |
| Msa0118400 | Msa0251240 | 0.818720 | 1.691510e-52 | -8.615850e-47 |
| Msa0118400 | Msa0252770 | 0.803940 | 2.743068e-49 | -8.615850e-47 |
| Msa0118400 | Msa0257680 | 0.809960 | 1.461004e-50 | -8.615850e-47 |
| Msa0118400 | Msa0262560 | 0.800462 | 1.424942e-48 | -8.615850e-47 |
| Msa0118400 | Msa0280490 | 0.823827 | 1.122952e-53 | -8.615850e-47 |
| Msa0118400 | Msa0287650 | 0.800037 | 1.738971e-48 | -8.615850e-47 |
| Msa0118400 | Msa0298240 | 0.815246 | 1.019963e-51 | -8.615850e-47 |
| Msa0118400 | Msa0301280 | 0.804484 | 2.112490e-49 | -8.615850e-47 |
| Msa0118400 | Msa0306300 | 0.805820 | 1.109774e-49 | -8.615850e-47 |
| Msa0118400 | Msa0314630 | 0.803262 | 3.791220e-49 | -8.615850e-47 |
| Msa0118400 | Msa0315250 | 0.806476 | 8.074266e-50 | -8.615850e-47 |
| Msa0118400 | Msa0322830 | 0.866730 | 2.302931e-65 | -8.615850e-47 |
| Msa0118400 | Msa0322840 | 0.825311 | 5.023793e-54 | -8.615850e-47 |
| Msa0118400 | Msa0322860 | 0.810961 | 8.885380e-51 | -8.615850e-47 |
| Msa0118400 | Msa0323610 | 0.824484 | 7.872789e-54 | -8.615850e-47 |
| Msa0118400 | Msa0329620 | 0.828291 | 9.753322e-55 | -8.615850e-47 |
| Msa0118400 | Msa0335270 | 0.805111 | 1.562699e-49 | -8.615850e-47 |
| Msa0118400 | Msa0337850 | 0.827272 | 1.714589e-54 | -8.615850e-47 |
| Msa0118400 | Msa0352000 | 0.823324 | 1.473118e-53 | -8.615850e-47 |
| Msa0118400 | Msa0362780 | 0.843446 | 1.394573e-58 | -8.615850e-47 |
| Msa0118400 | Msa0371540 | 0.822371 | 2.455214e-53 | -8.615850e-47 |
| Msa0118400 | Msa0371570 | 0.822756 | 1.998356e-53 | -8.615850e-47 |
| Msa0118400 | Msa0378500 | 0.827422 | 1.578492e-54 | -8.615850e-47 |
| Msa0118400 | Msa0413930 | 0.806679 | 7.316616e-50 | -8.615850e-47 |
| Msa0118400 | Msa0418200 | 0.805005 | 1.644408e-49 | -8.615850e-47 |
| Msa0118400 | Msa0419820 | 0.837781 | 4.243895e-57 | -8.615850e-47 |
| Msa0118400 | Msa0419970 | 0.839927 | 1.182355e-57 | -8.615850e-47 |
| Msa0118400 | Msa0419990 | 0.829279 | 5.627461e-55 | -8.615850e-47 |
| Msa0118400 | Msa0425010 | 0.804242 | 2.373323e-49 | -8.615850e-47 |
| Msa0118400 | Msa0436050 | 0.808069 | 3.711730e-50 | -8.615850e-47 |
| Msa0118400 | Msa0436280 | -0.802320 | 5.933738e-49 | -8.615850e-47 |
| Msa0118400 | Msa0436460 | 0.837651 | 4.584976e-57 | -8.615850e-47 |
| Msa0118400 | Msa0436500 | 0.890678 | 7.930015e-74 | -8.615850e-47 |
| Msa0118400 | Msa0444010 | 0.801928 | 7.143705e-49 | -8.615850e-47 |
| Msa0118400 | Msa0455160 | 0.813263 | 2.797017e-51 | -8.615850e-47 |
| Msa0118400 | Msa0457190 | 0.805874 | 1.081285e-49 | -8.615850e-47 |
| Msa0118400 | Msa0459770 | -0.805573 | 1.250752e-49 | -8.615850e-47 |
| Msa0118400 | Msa0461720 | 0.804304 | 2.303203e-49 | -8.615850e-47 |
| Msa0118400 | Msa0465930 | 0.824854 | 6.441200e-54 | -8.615850e-47 |
| Msa0118400 | Msa0465970 | 0.817772 | 2.772277e-52 | -8.615850e-47 |
| Msa0118400 | Msa0466060 | 0.816753 | 4.700706e-52 | -8.615850e-47 |
| Msa0118400 | Msa0480980 | 0.810913 | 9.097012e-51 | -8.615850e-47 |
| Msa0118400 | Msa0503580 | 0.834059 | 3.730251e-56 | -8.615850e-47 |
| Msa0118400 | Msa0516320 | 0.803426 | 3.505847e-49 | -8.615850e-47 |
| Msa0118400 | Msa0517330 | 0.809626 | 1.723951e-50 | -8.615850e-47 |
| Msa0118400 | Msa0517340 | 0.820469 | 6.748828e-53 | -8.615850e-47 |
| Msa0118400 | Msa0521500 | 0.805230 | 1.475448e-49 | -8.615850e-47 |
| Msa0118400 | Msa0521540 | 0.807358 | 5.257184e-50 | -8.615850e-47 |
| Msa0118400 | Msa0532300 | 0.833104 | 6.460675e-56 | -8.615850e-47 |
| Msa0118400 | Msa0537920 | 0.802652 | 5.068334e-49 | -8.615850e-47 |
| Msa0118400 | Msa0547140 | 0.800174 | 1.630953e-48 | -8.615850e-47 |
| Msa0118400 | Msa0571140 | 0.806030 | 1.002564e-49 | -8.615850e-47 |
| Msa0118400 | Msa0579290 | 0.812520 | 4.067697e-51 | -8.615850e-47 |
| Msa0118400 | Msa0579390 | 0.810900 | 9.159131e-51 | -8.615850e-47 |
| Msa0118400 | Msa0581760 | 0.813197 | 2.891855e-51 | -8.615850e-47 |
| Msa0118400 | Msa0584130 | 0.839734 | 1.326996e-57 | -8.615850e-47 |
| Msa0118400 | Msa0585730 | 0.800374 | 1.485102e-48 | -8.615850e-47 |
| Msa0118400 | Msa0601850 | 0.805868 | 1.084327e-49 | -8.615850e-47 |
| Msa0118400 | Msa0607200 | 0.813550 | 2.418141e-51 | -8.615850e-47 |
| Msa0118400 | Msa0620240 | 0.817542 | 3.124821e-52 | -8.615850e-47 |
| Msa0118400 | Msa0625890 | 0.815238 | 1.024017e-51 | -8.615850e-47 |
| Msa0118400 | Msa0629370 | 0.827450 | 1.554424e-54 | -8.615850e-47 |
| Msa0118400 | Msa0649970 | 0.838011 | 3.703653e-57 | -8.615850e-47 |
| Msa0118400 | Msa0657670 | 0.803958 | 2.718669e-49 | -8.615850e-47 |
| Msa0118400 | Msa0657970 | 0.808544 | 2.939268e-50 | -8.615850e-47 |
| Msa0118400 | Msa0663590 | 0.802782 | 4.763523e-49 | -8.615850e-47 |
| Msa0118400 | Msa0663680 | 0.825067 | 5.736881e-54 | -8.615850e-47 |
| Msa0118400 | Msa0680150 | 0.802191 | 6.306332e-49 | -8.615850e-47 |
| Msa0118400 | Msa0682530 | 0.848664 | 5.306633e-60 | -8.615850e-47 |
| Msa0118400 | Msa0685330 | 0.803723 | 3.042950e-49 | -8.615850e-47 |
| Msa0118400 | Msa0691160 | 0.812770 | 3.586548e-51 | -8.615850e-47 |
| Msa0118400 | Msa0707220 | 0.805264 | 1.452091e-49 | -8.615850e-47 |
| Msa0118400 | Msa0717670 | 0.806495 | 7.999587e-50 | -8.615850e-47 |
| Msa0118400 | Msa0734660 | 0.842173 | 3.040085e-58 | -8.615850e-47 |
| Msa0118400 | Msa0747780 | 0.836165 | 1.097887e-56 | -8.615850e-47 |
| Msa0118400 | Msa0754030 | 0.814630 | 1.396964e-51 | -8.615850e-47 |
| Msa0118400 | Msa0760890 | 0.806976 | 6.330924e-50 | -8.615850e-47 |
| Msa0118400 | Msa0773610 | 0.816276 | 6.010943e-52 | -8.615850e-47 |
| Msa0118400 | Msa0776220 | 0.846436 | 2.174532e-59 | -8.615850e-47 |
| Msa0118400 | Msa0807110 | 0.812377 | 4.372367e-51 | -8.615850e-47 |
| Msa0118400 | Msa0812990 | 0.802906 | 4.491941e-49 | -8.615850e-47 |
| Msa0118400 | Msa0813670 | 0.837073 | 6.446019e-57 | -8.615850e-47 |
| Msa0118400 | Msa0822990 | 0.801316 | 9.536329e-49 | -8.615850e-47 |
| Msa0118400 | Msa0823400 | 0.832764 | 7.849150e-56 | -8.615850e-47 |
| Msa0118400 | Msa0824680 | 0.808880 | 2.491833e-50 | -8.615850e-47 |
| Msa0118400 | Msa0833040 | 0.823874 | 1.094784e-53 | -8.615850e-47 |
| Msa0118400 | Msa0843640 | 0.831315 | 1.790185e-55 | -8.615850e-47 |
| Msa0118400 | Msa0853540 | 0.833389 | 5.483656e-56 | -8.615850e-47 |
| Msa0118400 | Msa0854120 | 0.800586 | 1.344649e-48 | -8.615850e-47 |
| Msa0118400 | Msa0862100 | 0.807136 | 5.857279e-50 | -8.615850e-47 |
| Msa0118400 | Msa0867350 | 0.810717 | 1.003018e-50 | -8.615850e-47 |
| Msa0118400 | Msa0870620 | 0.812368 | 4.392019e-51 | -8.615850e-47 |
| Msa0118400 | Msa0872310 | 0.824891 | 6.311171e-54 | -8.615850e-47 |
| Msa0118400 | Msa0873190 | 0.816915 | 4.322216e-52 | -8.615850e-47 |
| Msa0118400 | Msa0880140 | 0.830263 | 3.240167e-55 | -8.615850e-47 |
| Msa0118400 | Msa0880440 | 0.809671 | 1.685832e-50 | -8.615850e-47 |
| Msa0118400 | Msa0885060 | 0.876762 | 1.079047e-68 | -8.615850e-47 |
| Msa0118400 | Msa0905550 | 0.820827 | 5.583735e-53 | -8.615850e-47 |
| Msa0118400 | Msa0905720 | 0.808732 | 2.680473e-50 | -8.615850e-47 |
| Msa0118400 | Msa0911990 | 0.806842 | 6.760119e-50 | -8.615850e-47 |
| Msa0118400 | Msa0936410 | 0.803096 | 4.103682e-49 | -8.615850e-47 |
| Msa0118400 | Msa0937240 | 0.812463 | 4.185795e-51 | -8.615850e-47 |
| Msa0118400 | Msa0937550 | 0.830015 | 3.726317e-55 | -8.615850e-47 |
| Msa0118400 | Msa0941730 | 0.816698 | 4.837022e-52 | -8.615850e-47 |
| Msa0118400 | Msa0941750 | 0.807880 | 4.072328e-50 | -8.615850e-47 |
| Msa0118400 | Msa0946320 | 0.841313 | 5.125467e-58 | -8.615850e-47 |
| Msa0118400 | Msa0974750 | 0.800633 | 1.315216e-48 | -8.615850e-47 |
| Msa0118400 | Msa0999350 | 0.806847 | 6.741430e-50 | -8.615850e-47 |
| Msa0118400 | Msa0999360 | 0.836992 | 6.759192e-57 | -8.615850e-47 |
| Msa0118400 | Msa0999410 | 0.813578 | 2.384914e-51 | -8.615850e-47 |
| Msa0118400 | Msa1004210 | 0.803924 | 2.763731e-49 | -8.615850e-47 |
| Msa0118400 | Msa1009000 | 0.803929 | 2.757362e-49 | -8.615850e-47 |
| Msa0118400 | Msa1010110 | 0.859850 | 3.109020e-63 | -8.615850e-47 |
| Msa0118400 | Msa1014270 | 0.812588 | 3.931407e-51 | -8.615850e-47 |
| Msa0118400 | Msa1018790 | 0.800793 | 1.219824e-48 | -8.615850e-47 |
| Msa0118400 | Msa1019020 | 0.806314 | 8.735923e-50 | -8.615850e-47 |
| Msa0118400 | Msa1020720 | 0.823390 | 1.421320e-53 | -8.615850e-47 |
| Msa0118400 | Msa1023400 | 0.837020 | 6.650765e-57 | -8.615850e-47 |
| Msa0118400 | Msa1033560 | 0.815347 | 9.685270e-52 | -8.615850e-47 |
| Msa0118400 | Msa1034680 | 0.830962 | 2.185045e-55 | -8.615850e-47 |
| Msa0118400 | Msa1038050 | 0.803934 | 2.750266e-49 | -8.615850e-47 |
| Msa0118400 | Msa1041530 | 0.821781 | 3.363309e-53 | -8.615850e-47 |
| Msa0118400 | Msa1046610 | 0.819535 | 1.103602e-52 | -8.615850e-47 |
| Msa0118400 | Msa1055260 | 0.827080 | 1.905735e-54 | -8.615850e-47 |
| Msa0118400 | Msa1055280 | 0.835836 | 1.330451e-56 | -8.615850e-47 |
| Msa0118400 | Msa1081570 | 0.815400 | 9.426297e-52 | -8.615850e-47 |
| Msa0118400 | Msa1097560 | 0.831999 | 1.213740e-55 | -8.615850e-47 |
| Msa0118400 | Msa1098560 | 0.807686 | 4.478408e-50 | -8.615850e-47 |
| Msa0118400 | Msa1104000 | 0.813488 | 2.495245e-51 | -8.615850e-47 |
| Msa0118400 | Msa1106810 | 0.801067 | 1.072331e-48 | -8.615850e-47 |
| Msa0118400 | Msa1113850 | 0.816289 | 5.972631e-52 | -8.615850e-47 |
| Msa0118400 | Msa1127140 | 0.824400 | 8.238509e-54 | -8.615850e-47 |
| Msa0118400 | Msa1133000 | 0.816292 | 5.962465e-52 | -8.615850e-47 |
| Msa0118400 | Msa1139410 | 0.810008 | 1.426661e-50 | -8.615850e-47 |
| Msa0118400 | Msa1139810 | 0.807056 | 6.091179e-50 | -8.615850e-47 |
| Msa0118400 | Msa1139880 | 0.814464 | 1.520530e-51 | -8.615850e-47 |
| Msa0118400 | Msa1145020 | 0.837128 | 6.239662e-57 | -8.615850e-47 |
| Msa0118400 | Msa1147570 | 0.809751 | 1.620685e-50 | -8.615850e-47 |
| Msa0118400 | Msa1160400 | 0.801220 | 9.980601e-49 | -8.615850e-47 |
| Msa0118400 | Msa1166400 | 0.804134 | 2.499513e-49 | -8.615850e-47 |
| Msa0118400 | Msa1176160 | 0.837310 | 5.606224e-57 | -8.615850e-47 |
| Msa0118400 | Msa1179280 | 0.800168 | 1.635839e-48 | -8.615850e-47 |
| Msa0118400 | Msa1196080 | 0.821127 | 4.762292e-53 | -8.615850e-47 |
| Msa0118400 | Msa1200440 | 0.803786 | 2.952286e-49 | -8.615850e-47 |
| Msa0118400 | Msa1222970 | 0.815311 | 9.864724e-52 | -8.615850e-47 |
| Msa0118400 | Msa1228190 | 0.815475 | 9.071602e-52 | -8.615850e-47 |
| Msa0118400 | Msa1228210 | 0.819017 | 1.448435e-52 | -8.615850e-47 |
| Msa0118400 | Msa1228610 | 0.837326 | 5.551737e-57 | -8.615850e-47 |
| Msa0118400 | Msa1248040 | 0.839350 | 1.670106e-57 | -8.615850e-47 |
| Msa0118400 | Msa1264020 | 0.825675 | 4.118694e-54 | -8.615850e-47 |
| Msa0118400 | Msa1265960 | 0.810134 | 1.340530e-50 | -8.615850e-47 |
| Msa0118400 | Msa1271260 | 0.815632 | 8.369691e-52 | -8.615850e-47 |
| Msa0118400 | Msa1271280 | 0.824209 | 9.136926e-54 | -8.615850e-47 |
| Msa0118400 | Msa1271290 | 0.811647 | 6.304762e-51 | -8.615850e-47 |
| Msa0118400 | Msa1271300 | 0.805498 | 1.296933e-49 | -8.615850e-47 |
| Msa0118400 | Msa1293770 | 0.804450 | 2.147466e-49 | -8.615850e-47 |
| Msa0118400 | Msa1296800 | 0.807208 | 5.655800e-50 | -8.615850e-47 |
| Msa0118400 | Msa1307190 | 0.825953 | 3.537649e-54 | -8.615850e-47 |
| Msa0118400 | Msa1308380 | 0.807905 | 4.021527e-50 | -8.615850e-47 |
| Msa0118400 | Msa1324780 | 0.802924 | 4.452996e-49 | -8.615850e-47 |
| Msa0118400 | Msa1342430 | 0.820783 | 5.714455e-53 | -8.615850e-47 |
| Msa0118400 | Msa1367080 | 0.811228 | 7.776528e-51 | -8.615850e-47 |
| Msa0118400 | Msa1374440 | 0.800905 | 1.157217e-48 | -8.615850e-47 |
| Msa0118400 | Msa1379970 | 0.818950 | 1.499870e-52 | -8.615850e-47 |
| Msa0118400 | Msa1379990 | 0.846859 | 1.666883e-59 | -8.615850e-47 |
| Msa0118400 | Msa1392200 | 0.808111 | 3.635868e-50 | -8.615850e-47 |
| Msa0118400 | Msa1408870 | 0.812428 | 4.260133e-51 | -8.615850e-47 |
| Msa0118400 | Msa1411070 | 0.829475 | 5.042254e-55 | -8.615850e-47 |
| Msa0118400 | Msa1420060 | 0.848913 | 4.525452e-60 | -8.615850e-47 |
| Msa0118400 | Msa1421550 | 0.804895 | 1.733999e-49 | -8.615850e-47 |
| Msa0118400 | Msa1423990 | 0.821775 | 3.373911e-53 | -8.615850e-47 |
| Msa0118400 | Msa1424690 | 0.846921 | 1.602819e-59 | -8.615850e-47 |
| Msa0118400 | Msa1429250 | 0.810157 | 1.325142e-50 | -8.615850e-47 |
| Msa0118400 | Msa1429360 | -0.803707 | 3.065895e-49 | -8.615850e-47 |
| Msa0118400 | Msa1442290 | 0.807418 | 5.105112e-50 | -8.615850e-47 |
| Msa0118400 | Msa1453710 | 0.835320 | 1.797270e-56 | -8.615850e-47 |
| Msa0118400 | Msa1455590 | 0.812318 | 4.504325e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118400 | MtrunA17_Chr1g0175821 | 46.316 | 190 | 92 | 1 | 6 | 185 | 26 | 215 | 5.78e-47 | 153 |
| Msa0118400 | MtrunA17_Chr1g0175811 | 39.819 | 221 | 83 | 6 | 1 | 186 | 1 | 206 | 1.01e-35 | 124 |
| Msa0118400 | MtrunA17_Chr1g0175791 | 45.963 | 161 | 59 | 3 | 8 | 141 | 67 | 226 | 2.01e-28 | 106 |
| Msa0118400 | MtrunA17_Chr5g0420601 | 33.333 | 201 | 96 | 5 | 21 | 186 | 85 | 282 | 1.39e-18 | 80.9 |
| Msa0118400 | MtrunA17_Chr1g0175781 | 31.250 | 208 | 94 | 5 | 21 | 186 | 90 | 290 | 7.47e-16 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 38 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAACTTGTTCAAGGTTTA+AGG | 0.133169 | 1_3:-41150593 | None:intergenic |
| CTTGTAAACAATTCCTTCTT+TGG | 0.221022 | 1_3:-41150451 | None:intergenic |
| CTTCGAAAAGAGTGGATTAA+TGG | 0.276341 | 1_3:+41150374 | Msa0118400:CDS |
| GGAGCAAAAGGTTTGTGATT+TGG | 0.304158 | 1_3:+41150245 | Msa0118400:CDS |
| AAGTTGGAGGCTGAAATTAA+AGG | 0.305610 | 1_3:+41150471 | Msa0118400:CDS |
| CTTGTTCAAGGTTTAAGGTT+AGG | 0.370602 | 1_3:-41150588 | None:intergenic |
| ATGGCTACTCTACATCAATC+TGG | 0.390287 | 1_3:+41150106 | Msa0118400:CDS |
| GCAAGCAACACCCGTTCAAT+TGG | 0.411385 | 1_3:+41150203 | Msa0118400:CDS |
| AGTTGGAGGCTGAAATTAAA+GGG | 0.412362 | 1_3:+41150472 | Msa0118400:CDS |
| TGCTCGTTGTATGGAGCAAA+AGG | 0.418843 | 1_3:+41150233 | Msa0118400:CDS |
| GGAAAATTGCACACCAAAGA+AGG | 0.418990 | 1_3:+41150438 | Msa0118400:CDS |
| GGTCTCGATTGCTCGTTGTA+TGG | 0.434380 | 1_3:+41150224 | Msa0118400:CDS |
| CACTAAAATTGAAGAATTGA+AGG | 0.435268 | 1_3:+41150500 | Msa0118400:CDS |
| AGAAGGAATTGTTTACAAGT+TGG | 0.457133 | 1_3:+41150455 | Msa0118400:CDS |
| GTGATTTGGAAATGAGCTGC+AGG | 0.481810 | 1_3:+41150259 | Msa0118400:CDS |
| AGGAATTGTTTACAAGTTGG+AGG | 0.487776 | 1_3:+41150458 | Msa0118400:CDS |
| AAAGGTTCATGAGGCATATG+AGG | 0.490646 | 1_3:+41150149 | Msa0118400:CDS |
| ATTGTAGTTCAGCACAATGT+TGG | 0.502018 | 1_3:+41150528 | Msa0118400:CDS |
| CTGAATCTGAGAATAACATA+GGG | 0.510118 | 1_3:+41150322 | Msa0118400:CDS |
| TCTGAATCTGAGAATAACAT+AGG | 0.510558 | 1_3:+41150321 | Msa0118400:CDS |
| GAGTGGATTAATGGAAAGAA+CGG | 0.524492 | 1_3:+41150383 | Msa0118400:CDS |
| GCACAATGTTGGCTTTAATG+AGG | 0.525326 | 1_3:+41150539 | Msa0118400:CDS |
| TCATGAGGCATATGAGGAGT+GGG | 0.527499 | 1_3:+41150155 | Msa0118400:CDS |
| GCAATCGAGACCAATTGAAC+GGG | 0.527802 | 1_3:-41150213 | None:intergenic |
| GTAGAGTAGCCATTCTCAGC+TGG | 0.533250 | 1_3:-41150096 | None:intergenic |
| AAGACTACACCAGCTGAGAA+TGG | 0.552919 | 1_3:+41150087 | Msa0118400:CDS |
| TGGCTACTCTACATCAATCT+GGG | 0.557094 | 1_3:+41150107 | Msa0118400:CDS |
| GAGTTAATCTTCGAAAAGAG+TGG | 0.570774 | 1_3:+41150366 | Msa0118400:CDS |
| AGAATGGATCCCAAGAGATG+TGG | 0.577195 | 1_3:+41150042 | None:intergenic |
| TATCACAGAAAAGGTTCATG+AGG | 0.579514 | 1_3:+41150140 | Msa0118400:CDS |
| TTCATGAGGCATATGAGGAG+TGG | 0.581486 | 1_3:+41150154 | Msa0118400:CDS |
| CGGGTGTTGCTTGCAAAACA+CGG | 0.601763 | 1_3:-41150194 | None:intergenic |
| AGCAATCGAGACCAATTGAA+CGG | 0.624783 | 1_3:-41150214 | None:intergenic |
| TGATTTGGAAATGAGCTGCA+GGG | 0.643574 | 1_3:+41150260 | Msa0118400:CDS |
| CATGAGGCATATGAGGAGTG+GGG | 0.686751 | 1_3:+41150156 | Msa0118400:CDS |
| TGAATCTGAGAATAACATAG+GGG | 0.713948 | 1_3:+41150323 | Msa0118400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGACAATTTTATCACAGAAA+AGG | + | chr1_3:41150131-41150150 | Msa0118400:CDS | 25.0% |
| !! | AATGAAAACTCCAAGATTTT+AGG | + | chr1_3:41150417-41150436 | Msa0118400:CDS | 25.0% |
| ! | CACTAAAATTGAAGAATTGA+AGG | + | chr1_3:41150500-41150519 | Msa0118400:CDS | 25.0% |
| TCTGAATCTGAGAATAACAT+AGG | + | chr1_3:41150321-41150340 | Msa0118400:CDS | 30.0% | |
| CTGAATCTGAGAATAACATA+GGG | + | chr1_3:41150322-41150341 | Msa0118400:CDS | 30.0% | |
| TGAATCTGAGAATAACATAG+GGG | + | chr1_3:41150323-41150342 | Msa0118400:CDS | 30.0% | |
| ! | GTGCAATTTTCCTAAAATCT+TGG | - | chr1_3:41150430-41150449 | None:intergenic | 30.0% |
| CTTGTAAACAATTCCTTCTT+TGG | - | chr1_3:41150454-41150473 | None:intergenic | 30.0% | |
| AGAAGGAATTGTTTACAAGT+TGG | + | chr1_3:41150455-41150474 | Msa0118400:CDS | 30.0% | |
| TATCACAGAAAAGGTTCATG+AGG | + | chr1_3:41150140-41150159 | Msa0118400:CDS | 35.0% | |
| GAGTTAATCTTCGAAAAGAG+TGG | + | chr1_3:41150366-41150385 | Msa0118400:CDS | 35.0% | |
| !! | CTTCGAAAAGAGTGGATTAA+TGG | + | chr1_3:41150374-41150393 | Msa0118400:CDS | 35.0% |
| !! | GAGTGGATTAATGGAAAGAA+CGG | + | chr1_3:41150383-41150402 | Msa0118400:CDS | 35.0% |
| ! | AGGAATTGTTTACAAGTTGG+AGG | + | chr1_3:41150458-41150477 | Msa0118400:CDS | 35.0% |
| AAGTTGGAGGCTGAAATTAA+AGG | + | chr1_3:41150471-41150490 | Msa0118400:CDS | 35.0% | |
| AGTTGGAGGCTGAAATTAAA+GGG | + | chr1_3:41150472-41150491 | Msa0118400:CDS | 35.0% | |
| ATTGTAGTTCAGCACAATGT+TGG | + | chr1_3:41150528-41150547 | Msa0118400:CDS | 35.0% | |
| ! | CTACGTTTTCCACATCTCTT+GGG | - | chr1_3:41150054-41150073 | None:intergenic | 40.0% |
| ATGGCTACTCTACATCAATC+TGG | + | chr1_3:41150106-41150125 | Msa0118400:CDS | 40.0% | |
| TGGCTACTCTACATCAATCT+GGG | + | chr1_3:41150107-41150126 | Msa0118400:CDS | 40.0% | |
| AAAGGTTCATGAGGCATATG+AGG | + | chr1_3:41150149-41150168 | Msa0118400:CDS | 40.0% | |
| AGCAATCGAGACCAATTGAA+CGG | - | chr1_3:41150217-41150236 | None:intergenic | 40.0% | |
| GGAGCAAAAGGTTTGTGATT+TGG | + | chr1_3:41150245-41150264 | Msa0118400:CDS | 40.0% | |
| ! | TGATTTGGAAATGAGCTGCA+GGG | + | chr1_3:41150260-41150279 | Msa0118400:CDS | 40.0% |
| GGAAAATTGCACACCAAAGA+AGG | + | chr1_3:41150438-41150457 | Msa0118400:CDS | 40.0% | |
| !! | GCACAATGTTGGCTTTAATG+AGG | + | chr1_3:41150539-41150558 | Msa0118400:CDS | 40.0% |
| ! | GCTACGTTTTCCACATCTCT+TGG | - | chr1_3:41150055-41150074 | None:intergenic | 45.0% |
| AAGACTACACCAGCTGAGAA+TGG | + | chr1_3:41150087-41150106 | Msa0118400:CDS | 45.0% | |
| TTCATGAGGCATATGAGGAG+TGG | + | chr1_3:41150154-41150173 | Msa0118400:CDS | 45.0% | |
| TCATGAGGCATATGAGGAGT+GGG | + | chr1_3:41150155-41150174 | Msa0118400:CDS | 45.0% | |
| GCAATCGAGACCAATTGAAC+GGG | - | chr1_3:41150216-41150235 | None:intergenic | 45.0% | |
| TGCTCGTTGTATGGAGCAAA+AGG | + | chr1_3:41150233-41150252 | Msa0118400:CDS | 45.0% | |
| ! | GTGATTTGGAAATGAGCTGC+AGG | + | chr1_3:41150259-41150278 | Msa0118400:CDS | 45.0% |
| GTAGAGTAGCCATTCTCAGC+TGG | - | chr1_3:41150099-41150118 | None:intergenic | 50.0% | |
| CATGAGGCATATGAGGAGTG+GGG | + | chr1_3:41150156-41150175 | Msa0118400:CDS | 50.0% | |
| !! | CGGGTGTTGCTTGCAAAACA+CGG | - | chr1_3:41150197-41150216 | None:intergenic | 50.0% |
| GCAAGCAACACCCGTTCAAT+TGG | + | chr1_3:41150203-41150222 | Msa0118400:CDS | 50.0% | |
| GGTCTCGATTGCTCGTTGTA+TGG | + | chr1_3:41150224-41150243 | Msa0118400:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 41150045 | 41150605 | 41150045 | ID=Msa0118400;Name=Msa0118400 |
| chr1_3 | mRNA | 41150045 | 41150605 | 41150045 | ID=Msa0118400-mRNA-1;Parent=Msa0118400;Name=Msa0118400-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|-1|0|1|-1|1|1|0|186 |
| chr1_3 | exon | 41150045 | 41150605 | 41150045 | ID=Msa0118400-mRNA-1:exon:12475;Parent=Msa0118400-mRNA-1 |
| chr1_3 | CDS | 41150045 | 41150605 | 41150045 | ID=Msa0118400-mRNA-1:cds;Parent=Msa0118400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
