Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424690 | sp|Q84UV8|NEC3_NICLS | 51.087 | 276 | 123 | 8 | 1 | 273 | 3 | 269 | 1.77e-93 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424690 | A0A072TG98 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 547 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa1424690 | 0.821554 | 3.795562e-53 | -8.615850e-47 |
| Msa0022640 | Msa1424690 | 0.836670 | 8.167684e-57 | -8.615850e-47 |
| Msa0036430 | Msa1424690 | 0.835913 | 1.272425e-56 | -8.615850e-47 |
| Msa0050990 | Msa1424690 | 0.812785 | 3.559043e-51 | -8.615850e-47 |
| Msa0055710 | Msa1424690 | 0.803841 | 2.875257e-49 | -8.615850e-47 |
| Msa0080990 | Msa1424690 | 0.810311 | 1.227549e-50 | -8.615850e-47 |
| Msa0084500 | Msa1424690 | 0.824601 | 7.389537e-54 | -8.615850e-47 |
| Msa0106790 | Msa1424690 | 0.839299 | 1.722261e-57 | -8.615850e-47 |
| Msa0110970 | Msa1424690 | 0.810648 | 1.038528e-50 | -8.615850e-47 |
| Msa0118380 | Msa1424690 | 0.831989 | 1.220820e-55 | -8.615850e-47 |
| Msa0118400 | Msa1424690 | 0.846921 | 1.602819e-59 | -8.615850e-47 |
| Msa1378770 | Msa1424690 | 0.809294 | 2.031914e-50 | -8.615850e-47 |
| Msa1379970 | Msa1424690 | 0.810546 | 1.092182e-50 | -8.615850e-47 |
| Msa1408870 | Msa1424690 | 0.819280 | 1.261669e-52 | -8.615850e-47 |
| Msa1420060 | Msa1424690 | 0.821992 | 3.005291e-53 | -8.615850e-47 |
| Msa1423990 | Msa1424690 | 0.805125 | 1.552670e-49 | -8.615850e-47 |
| Msa1424690 | Msa1453710 | 0.814944 | 1.190291e-51 | -8.615850e-47 |
| Msa0649970 | Msa1424690 | 0.816877 | 4.408243e-52 | -8.615850e-47 |
| Msa0663680 | Msa1424690 | 0.809381 | 1.946197e-50 | -8.615850e-47 |
| Msa0667850 | Msa1424690 | 0.812393 | 4.336038e-51 | -8.615850e-47 |
| Msa0682530 | Msa1424690 | 0.986654 | 1.628252e-167 | -8.615850e-47 |
| Msa0682550 | Msa1424690 | 0.800864 | 1.179763e-48 | -8.615850e-47 |
| Msa0707220 | Msa1424690 | 0.820113 | 8.140371e-53 | -8.615850e-47 |
| Msa0717670 | Msa1424690 | 0.820435 | 6.868156e-53 | -8.615850e-47 |
| Msa0742180 | Msa1424690 | 0.818801 | 1.621946e-52 | -8.615850e-47 |
| Msa0748000 | Msa1424690 | 0.808751 | 2.655842e-50 | -8.615850e-47 |
| Msa0754030 | Msa1424690 | 0.819080 | 1.400964e-52 | -8.615850e-47 |
| Msa0807110 | Msa1424690 | 0.819037 | 1.433224e-52 | -8.615850e-47 |
| Msa0815320 | Msa1424690 | 0.817764 | 2.783974e-52 | -8.615850e-47 |
| Msa0823400 | Msa1424690 | 0.805732 | 1.158010e-49 | -8.615850e-47 |
| Msa0833040 | Msa1424690 | 0.813170 | 2.930791e-51 | -8.615850e-47 |
| Msa0130570 | Msa1424690 | 0.832414 | 9.583282e-56 | -8.615850e-47 |
| Msa0141600 | Msa1424690 | 0.823928 | 1.063388e-53 | -8.615850e-47 |
| Msa0147560 | Msa1424690 | 0.817522 | 3.156180e-52 | -8.615850e-47 |
| Msa0153420 | Msa1424690 | 0.805614 | 1.225910e-49 | -8.615850e-47 |
| Msa0161680 | Msa1424690 | 0.840615 | 7.813715e-58 | -8.615850e-47 |
| Msa0173990 | Msa1424690 | 0.848967 | 4.372393e-60 | -8.615850e-47 |
| Msa0176470 | Msa1424690 | 0.813879 | 2.046654e-51 | -8.615850e-47 |
| Msa0196150 | Msa1424690 | 0.803802 | 2.930011e-49 | -8.615850e-47 |
| Msa0197660 | Msa1424690 | 0.831519 | 1.594118e-55 | -8.615850e-47 |
| Msa0203030 | Msa1424690 | 0.833460 | 5.267373e-56 | -8.615850e-47 |
| Msa0212310 | Msa1424690 | 0.810564 | 1.082904e-50 | -8.615850e-47 |
| Msa0219190 | Msa1424690 | 0.800853 | 1.185791e-48 | -8.615850e-47 |
| Msa0219310 | Msa1424690 | 0.801152 | 1.030428e-48 | -8.615850e-47 |
| Msa0221090 | Msa1424690 | 0.847474 | 1.130493e-59 | -8.615850e-47 |
| Msa0236110 | Msa1424690 | 0.824690 | 7.040800e-54 | -8.615850e-47 |
| Msa1228190 | Msa1424690 | 0.809505 | 1.830103e-50 | -8.615850e-47 |
| Msa1233560 | Msa1424690 | 0.827252 | 1.733647e-54 | -8.615850e-47 |
| Msa1238930 | Msa1424690 | 0.803104 | 4.087010e-49 | -8.615850e-47 |
| Msa1248040 | Msa1424690 | 0.818535 | 1.863228e-52 | -8.615850e-47 |
| Msa1271260 | Msa1424690 | 0.827585 | 1.442550e-54 | -8.615850e-47 |
| Msa1289280 | Msa1424690 | 0.827931 | 1.191010e-54 | -8.615850e-47 |
| Msa1292010 | Msa1424690 | 0.804705 | 1.900164e-49 | -8.615850e-47 |
| Msa1308380 | Msa1424690 | 0.808301 | 3.312639e-50 | -8.615850e-47 |
| Msa1313970 | Msa1424690 | 0.819520 | 1.112283e-52 | -8.615850e-47 |
| Msa0371540 | Msa1424690 | 0.802376 | 5.778836e-49 | -8.615850e-47 |
| Msa0371560 | Msa1424690 | 0.807871 | 4.089504e-50 | -8.615850e-47 |
| Msa0378500 | Msa1424690 | 0.829542 | 4.856503e-55 | -8.615850e-47 |
| Msa0412800 | Msa1424690 | 0.813197 | 2.890844e-51 | -8.615850e-47 |
| Msa0413930 | Msa1424690 | 0.811193 | 7.913901e-51 | -8.615850e-47 |
| Msa0419970 | Msa1424690 | 0.811038 | 8.548620e-51 | -8.615850e-47 |
| Msa0436500 | Msa1424690 | 0.835238 | 1.884762e-56 | -8.615850e-47 |
| Msa0444010 | Msa1424690 | 0.806391 | 8.415662e-50 | -8.615850e-47 |
| Msa0465930 | Msa1424690 | 0.805133 | 1.546193e-49 | -8.615850e-47 |
| Msa0466050 | Msa1424690 | 0.800496 | 1.402469e-48 | -8.615850e-47 |
| Msa0466060 | Msa1424690 | 0.811700 | 6.139253e-51 | -8.615850e-47 |
| Msa0999350 | Msa1424690 | 0.809672 | 1.685470e-50 | -8.615850e-47 |
| Msa0999360 | Msa1424690 | 0.838193 | 3.325125e-57 | -8.615850e-47 |
| Msa0999400 | Msa1424690 | 0.801632 | 8.214854e-49 | -8.615850e-47 |
| Msa0999410 | Msa1424690 | 0.813739 | 2.197187e-51 | -8.615850e-47 |
| Msa1010110 | Msa1424690 | 0.808361 | 3.216345e-50 | -8.615850e-47 |
| Msa1034680 | Msa1424690 | 0.828213 | 1.018531e-54 | -8.615850e-47 |
| Msa1105890 | Msa1424690 | 0.803295 | 3.731678e-49 | -8.615850e-47 |
| Msa0239800 | Msa1424690 | 0.833682 | 4.635350e-56 | -8.615850e-47 |
| Msa0242480 | Msa1424690 | 0.810816 | 9.551185e-51 | -8.615850e-47 |
| Msa0262560 | Msa1424690 | 0.843064 | 1.762531e-58 | -8.615850e-47 |
| Msa0273990 | Msa1424690 | 0.814040 | 1.885822e-51 | -8.615850e-47 |
| Msa0277820 | Msa1424690 | 0.808616 | 2.838185e-50 | -8.615850e-47 |
| Msa0298240 | Msa1424690 | 0.802845 | 4.622817e-49 | -8.615850e-47 |
| Msa0314630 | Msa1424690 | 0.825102 | 5.629219e-54 | -8.615850e-47 |
| Msa0317510 | Msa1424690 | 0.838962 | 2.105038e-57 | -8.615850e-47 |
| Msa0322830 | Msa1424690 | 0.854763 | 9.911881e-62 | -8.615850e-47 |
| Msa0322840 | Msa1424690 | 0.840278 | 9.573396e-58 | -8.615850e-47 |
| Msa0322860 | Msa1424690 | 0.835365 | 1.751295e-56 | -8.615850e-47 |
| Msa0329620 | Msa1424690 | 0.804381 | 2.220224e-49 | -8.615850e-47 |
| Msa0331540 | Msa1424690 | 0.822066 | 2.890206e-53 | -8.615850e-47 |
| Msa0337850 | Msa1424690 | 0.813065 | 3.090121e-51 | -8.615850e-47 |
| Msa0362780 | Msa1424690 | 0.803554 | 3.297829e-49 | -8.615850e-47 |
| Msa1145020 | Msa1424690 | 0.801417 | 9.093936e-49 | -8.615850e-47 |
| Msa1162040 | Msa1424690 | 0.802690 | 4.977838e-49 | -8.615850e-47 |
| Msa1179280 | Msa1424690 | 0.825769 | 3.913562e-54 | -8.615850e-47 |
| Msa1196080 | Msa1424690 | 0.803619 | 3.197828e-49 | -8.615850e-47 |
| Msa1198090 | Msa1424690 | 0.805131 | 1.547837e-49 | -8.615850e-47 |
| Msa1201110 | Msa1424690 | 0.815088 | 1.105523e-51 | -8.615850e-47 |
| Msa0490480 | Msa1424690 | 0.815308 | 9.880266e-52 | -8.615850e-47 |
| Msa0503580 | Msa1424690 | 0.815128 | 1.083573e-51 | -8.615850e-47 |
| Msa0517330 | Msa1424690 | 0.813219 | 2.858958e-51 | -8.615850e-47 |
| Msa0517340 | Msa1424690 | 0.813253 | 2.810234e-51 | -8.615850e-47 |
| Msa0517350 | Msa1424690 | 0.813360 | 2.662910e-51 | -8.615850e-47 |
| Msa0584130 | Msa1424690 | 0.825003 | 5.938498e-54 | -8.615850e-47 |
| Msa0843640 | Msa1424690 | 0.839927 | 1.181830e-57 | -8.615850e-47 |
| Msa0870620 | Msa1424690 | 0.845154 | 4.845693e-59 | -8.615850e-47 |
| Msa0872420 | Msa1424690 | 0.832566 | 8.787808e-56 | -8.615850e-47 |
| Msa0885060 | Msa1424690 | 0.843099 | 1.725171e-58 | -8.615850e-47 |
| Msa0905720 | Msa1424690 | 0.835225 | 1.899223e-56 | -8.615850e-47 |
| Msa0909120 | Msa1424690 | 0.800796 | 1.218115e-48 | -8.615850e-47 |
| Msa0957640 | Msa1424690 | 0.815253 | 1.016144e-51 | -8.615850e-47 |
| Msa0974910 | Msa1424690 | 0.827928 | 1.193305e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424690 | MtrunA17_Chr4g0028741 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 547 |
| Msa1424690 | MtrunA17_Chr4g0028711 | 72.862 | 269 | 70 | 3 | 1 | 268 | 1 | 267 | 6.04e-138 | 389 |
| Msa1424690 | MtrunA17_Chr4g0028721 | 72.603 | 219 | 57 | 3 | 31 | 248 | 5 | 221 | 2.32e-114 | 329 |
| Msa1424690 | MtrunA17_Chr1g0180371 | 49.219 | 256 | 120 | 5 | 21 | 271 | 24 | 274 | 2.70e-88 | 264 |
| Msa1424690 | MtrunA17_Chr1g0180331 | 45.818 | 275 | 142 | 4 | 1 | 270 | 3 | 275 | 1.21e-84 | 254 |
| Msa1424690 | MtrunA17_Chr7g0257091 | 46.768 | 263 | 130 | 6 | 7 | 265 | 2 | 258 | 1.14e-77 | 236 |
| Msa1424690 | MtrunA17_Chr4g0028731 | 52.301 | 239 | 55 | 5 | 31 | 268 | 5 | 185 | 8.70e-73 | 221 |
| Msa1424690 | MtrunA17_Chr7g0264911 | 50.476 | 210 | 95 | 4 | 65 | 267 | 1 | 208 | 1.49e-65 | 204 |
| Msa1424690 | MtrunA17_Chr1g0178591 | 39.552 | 268 | 153 | 6 | 9 | 270 | 1 | 265 | 6.25e-63 | 199 |
| Msa1424690 | MtrunA17_Chr1g0178601 | 39.483 | 271 | 151 | 7 | 6 | 270 | 2 | 265 | 1.98e-59 | 189 |
| Msa1424690 | MtrunA17_Chr1g0178541 | 44.526 | 137 | 71 | 3 | 139 | 270 | 43 | 179 | 6.03e-34 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424690 | AT1G08080.1 | 50.763 | 262 | 125 | 4 | 7 | 267 | 12 | 270 | 7.67e-94 | 278 |
| Msa1424690 | AT2G28210.1 | 48.162 | 272 | 134 | 5 | 1 | 267 | 1 | 270 | 1.81e-91 | 272 |
| Msa1424690 | AT1G08065.1 | 47.955 | 269 | 133 | 6 | 3 | 267 | 2 | 267 | 1.26e-82 | 249 |
| Msa1424690 | AT4G20990.1 | 43.939 | 264 | 139 | 4 | 5 | 265 | 3 | 260 | 5.83e-77 | 235 |
| Msa1424690 | AT5G04180.1 | 45.349 | 258 | 134 | 4 | 13 | 268 | 6 | 258 | 7.67e-71 | 219 |
| Msa1424690 | AT4G21000.1 | 42.439 | 205 | 113 | 2 | 27 | 231 | 28 | 227 | 4.20e-60 | 191 |
| Msa1424690 | AT3G52720.3 | 38.806 | 268 | 150 | 6 | 7 | 267 | 4 | 264 | 1.47e-58 | 188 |
| Msa1424690 | AT3G52720.4 | 38.806 | 268 | 150 | 6 | 7 | 267 | 4 | 264 | 1.47e-58 | 188 |
| Msa1424690 | AT3G52720.1 | 38.806 | 268 | 150 | 6 | 7 | 267 | 4 | 264 | 1.47e-58 | 188 |
| Msa1424690 | AT5G56330.1 | 40.909 | 242 | 99 | 4 | 29 | 267 | 133 | 333 | 2.00e-55 | 182 |
| Msa1424690 | AT5G56330.2 | 48.588 | 177 | 86 | 4 | 29 | 202 | 133 | 307 | 1.56e-51 | 171 |
| Msa1424690 | AT3G52720.2 | 38.362 | 232 | 129 | 6 | 7 | 231 | 4 | 228 | 5.45e-46 | 154 |
| Msa1424690 | AT2G28210.2 | 43.750 | 144 | 75 | 4 | 1 | 139 | 1 | 143 | 1.37e-36 | 128 |
Find 65 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATGCTTATTACAATTAA+AGG | 0.129446 | tig0025788:+28578 | None:intergenic |
| GTCTATAGATTCTTCTATTT+AGG | 0.254410 | tig0025788:-28609 | Msa1424690:three_prime_UTR |
| TGCACTAAGCGGTTGTTTAA+TGG | 0.271511 | tig0025788:+28690 | None:intergenic |
| AAGCTAGTTGTAAATTAAAA+TGG | 0.285826 | tig0025788:-31810 | Msa1424690:exon |
| GGTTAATTAATTTGATATAT+AGG | 0.296330 | tig0025788:+31837 | None:intergenic |
| CCAGCAATGTCTCAAGAATT+TGG | 0.301397 | tig0025788:-31722 | Msa1424690:intron |
| GATCTGAAGTGGTCCTAAAT+TGG | 0.303051 | tig0025788:+31359 | None:intergenic |
| TTAATTTACAACTAGCTTAG+AGG | 0.336479 | tig0025788:+31815 | None:intergenic |
| ATCACTGCTGTTTCATTCAA+TGG | 0.349501 | tig0025788:+29527 | None:intergenic |
| GTCCGCTAGGACCACCGAAT+TGG | 0.354995 | tig0025788:-31470 | Msa1424690:CDS |
| CTCTGATCACTCAAATCAAT+TGG | 0.362232 | tig0025788:+31393 | None:intergenic |
| GCCAGATCCATTCTTGTCAT+TGG | 0.370744 | tig0025788:-29480 | Msa1424690:intron |
| AGTGTTCAAATATCCAATTT+AGG | 0.376254 | tig0025788:-31372 | Msa1424690:CDS |
| TCAAGCTATCTACAAATTGA+TGG | 0.380494 | tig0025788:-31163 | Msa1424690:CDS |
| GAAGTGTCACTCTAGAATTC+AGG | 0.382104 | tig0025788:-28558 | Msa1424690:three_prime_UTR |
| GAACAGCAGCTTGAAGCAAT+TGG | 0.399825 | tig0025788:+29011 | None:intergenic |
| TCCGCTAGGACCACCGAATT+GGG | 0.400186 | tig0025788:-31469 | Msa1424690:CDS |
| ATTGGAGTATTGTACACAAT+TGG | 0.400371 | tig0025788:-29506 | Msa1424690:CDS |
| CCAAATTCTTGAGACATTGC+TGG | 0.404913 | tig0025788:+31722 | None:intergenic |
| GTGTTGAAATTAATCTGATT+AGG | 0.417187 | tig0025788:+29268 | None:intergenic |
| AATGGCAAAGCTTACTTCAC+TGG | 0.426466 | tig0025788:-31792 | Msa1424690:CDS |
| TAATTTGATATATAGGATAG+TGG | 0.427727 | tig0025788:+31844 | None:intergenic |
| AGTGGGGTGTTGTACTGAAA+AGG | 0.431208 | tig0025788:+31862 | None:intergenic |
| GTTCGATCTAGAGTTACATT+TGG | 0.435599 | tig0025788:-29561 | Msa1424690:CDS |
| CATATAGTTGGAAGATGACT+TGG | 0.440855 | tig0025788:-29344 | Msa1424690:intron |
| TATGTACCTTACACCATTGA+TGG | 0.448047 | tig0025788:+31090 | None:intergenic |
| CATGCAGTGAAAATGTTACT+TGG | 0.451442 | tig0025788:-29204 | Msa1424690:CDS |
| TTGAATGAAACAGCAGTGAT+TGG | 0.455526 | tig0025788:-29524 | Msa1424690:CDS |
| GGTTTAATGTGTCCCCAATT+CGG | 0.461574 | tig0025788:+31456 | None:intergenic |
| ACCAATGACAAGAATGGATC+TGG | 0.463795 | tig0025788:+29479 | None:intergenic |
| CCATCTGAACACACCATCAA+TGG | 0.480971 | tig0025788:-31103 | Msa1424690:CDS |
| ACCCACTGCGCTTTCTTCCC+CGG | 0.482176 | tig0025788:+29300 | None:intergenic |
| ACTAAGTTCAATTATGATGA+AGG | 0.484674 | tig0025788:-31495 | Msa1424690:CDS |
| AATTTGATATATAGGATAGT+GGG | 0.488660 | tig0025788:+31845 | None:intergenic |
| TAAGTTACCAATGACAAGAA+TGG | 0.494347 | tig0025788:+29473 | None:intergenic |
| CAATTTCTAATAACACTGCC+GGG | 0.499821 | tig0025788:-29318 | Msa1424690:CDS |
| CTGGGCATGATGAAAGCAAA+AGG | 0.501092 | tig0025788:+31741 | None:intergenic |
| TTAGTGCAGCTGAACTGTTA+TGG | 0.502021 | tig0025788:-28675 | Msa1424690:CDS |
| ATGAACTTCTACAGTTCCAT+TGG | 0.505066 | tig0025788:-31132 | Msa1424690:CDS |
| AACAAAGTATTATAGATACA+TGG | 0.509158 | tig0025788:-29245 | Msa1424690:CDS |
| GCAATTTCTAATAACACTGC+CGG | 0.513543 | tig0025788:-29319 | Msa1424690:CDS |
| TAATTTACAACTAGCTTAGA+GGG | 0.521301 | tig0025788:+31816 | None:intergenic |
| CAAATTCTTGAGACATTGCT+GGG | 0.521315 | tig0025788:+31723 | None:intergenic |
| CGGTTGTTTAATGGCTGCAA+TGG | 0.524998 | tig0025788:+28699 | None:intergenic |
| CAGCTGAACTGTTATGGAGC+TGG | 0.535050 | tig0025788:-28669 | Msa1424690:CDS |
| AACACACCATCAATGGTGTA+AGG | 0.535872 | tig0025788:-31096 | Msa1424690:intron |
| CCATTGATGGTGTGTTCAGA+TGG | 0.547509 | tig0025788:+31103 | None:intergenic |
| TACTTGGACAGTAATTAAAG+AGG | 0.553080 | tig0025788:-29188 | Msa1424690:intron |
| ATAGTTGGAAGATGACTTGG+AGG | 0.569426 | tig0025788:-29341 | Msa1424690:intron |
| TATGATGAAGGGAGTCCGCT+AGG | 0.573502 | tig0025788:-31483 | Msa1424690:CDS |
| GCCGGGGAAGAAAGCGCAGT+GGG | 0.582727 | tig0025788:-29301 | Msa1424690:CDS |
| AAACAGGGGTCATGATGTCA+AGG | 0.587919 | tig0025788:-31307 | Msa1424690:intron |
| GACACATTAAACCCAACGAA+TGG | 0.596322 | tig0025788:-31446 | Msa1424690:CDS |
| CTAAGTTCAATTATGATGAA+GGG | 0.600898 | tig0025788:-31494 | Msa1424690:CDS |
| GGATTGTAATTGATCTGAAG+TGG | 0.603927 | tig0025788:+31348 | None:intergenic |
| ATTTGATATATAGGATAGTG+GGG | 0.610122 | tig0025788:+31846 | None:intergenic |
| CCCCAATTCGGTGGTCCTAG+CGG | 0.613572 | tig0025788:+31468 | None:intergenic |
| CCGCTAGGACCACCGAATTG+GGG | 0.623257 | tig0025788:-31468 | Msa1424690:CDS |
| TATAGACTATGATGAAGACT+AGG | 0.624211 | tig0025788:+28625 | None:intergenic |
| ACAAAGTATTATAGATACAT+GGG | 0.632114 | tig0025788:-29244 | Msa1424690:CDS |
| AACAGTTCAGCTGCACTAAG+CGG | 0.632783 | tig0025788:+28679 | None:intergenic |
| TTAATGTGTCCCCAATTCGG+TGG | 0.639897 | tig0025788:+31459 | None:intergenic |
| GTTCAGATGGAGTATGCCAA+TGG | 0.641032 | tig0025788:+31116 | None:intergenic |
| AATTTCTAATAACACTGCCG+GGG | 0.687577 | tig0025788:-29317 | Msa1424690:CDS |
| TGCCGGGGAAGAAAGCGCAG+TGG | 0.694489 | tig0025788:-29302 | Msa1424690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTAATTTTTTAATTTAAGT+GGG | + | tig0025788:29974-29993 | None:intergenic | 10.0% |
| !!! | ATGTAATTTTTTAATTTAAG+TGG | + | tig0025788:29975-29994 | None:intergenic | 10.0% |
| !!! | ATCAGTTTTTTTTTTTTTTT+TGG | - | tig0025788:30499-30518 | Msa1424690:intron | 10.0% |
| !!! | AAAAGAGTATAAAATTAAAT+GGG | + | tig0025788:31286-31305 | None:intergenic | 10.0% |
| !!! | GGTTAATTAATTTGATATAT+AGG | + | tig0025788:28520-28539 | None:intergenic | 15.0% |
| !! | TTATAATTATCATGAATCAA+GGG | + | tig0025788:29301-29320 | None:intergenic | 15.0% |
| !!! | TTAGTTTGAAAGTTTTATAT+TGG | - | tig0025788:29717-29736 | Msa1424690:intron | 15.0% |
| !!! | GGTATTATAATTTTTTTTTG+AGG | + | tig0025788:29947-29966 | None:intergenic | 15.0% |
| !!! | TAATTTTTTAATTTAAGTGG+GGG | + | tig0025788:29972-29991 | None:intergenic | 15.0% |
| !!! | GTAATTTTTTAATTTAAGTG+GGG | + | tig0025788:29973-29992 | None:intergenic | 15.0% |
| !!! | AAATACGTTTTTATTTTACT+CGG | - | tig0025788:30323-30342 | Msa1424690:intron | 15.0% |
| !! | AAAACTAAATATCCAATAAA+AGG | + | tig0025788:30435-30454 | None:intergenic | 15.0% |
| !!! | AGTTTTTTTTTTTTTTTTGG+TGG | - | tig0025788:30502-30521 | Msa1424690:intron | 15.0% |
| !!! | TTTCATTTTTTTCATATAGT+TGG | - | tig0025788:30998-31017 | Msa1424690:intron | 15.0% |
| !! | AATTTCTAATCAAATAAATG+TGG | + | tig0025788:31242-31261 | None:intergenic | 15.0% |
| !!! | GAAAAGAGTATAAAATTAAA+TGG | + | tig0025788:31287-31306 | None:intergenic | 15.0% |
| !! | AATTTGATATATAGGATAGT+GGG | + | tig0025788:28512-28531 | None:intergenic | 20.0% |
| !! | TAATTTGATATATAGGATAG+TGG | + | tig0025788:28513-28532 | None:intergenic | 20.0% |
| !! | AAGCTAGTTGTAAATTAAAA+TGG | - | tig0025788:28544-28563 | Msa1424690:three_prime_UTR | 20.0% |
| !! | TGTTTATACATGATATTGTT+CGG | + | tig0025788:28777-28796 | None:intergenic | 20.0% |
| !! | TTATTCAGTGAATTTGAAAA+CGG | + | tig0025788:28806-28825 | None:intergenic | 20.0% |
| !! | ATGATTCAGAAAATTATTAG+AGG | + | tig0025788:29138-29157 | None:intergenic | 20.0% |
| !!! | GAATCATTTTTTCTATGAAT+AGG | - | tig0025788:29151-29170 | Msa1424690:intron | 20.0% |
| !! | CTTATAATTATCATGAATCA+AGG | + | tig0025788:29302-29321 | None:intergenic | 20.0% |
| !!! | TTATTTGTTGTTAGAAGATT+TGG | - | tig0025788:29371-29390 | Msa1424690:intron | 20.0% |
| !!! | TATTTGTTGTTAGAAGATTT+GGG | - | tig0025788:29372-29391 | Msa1424690:intron | 20.0% |
| !!! | ATTAAGGGAATGAAAATTTT+TGG | - | tig0025788:29546-29565 | Msa1424690:CDS | 20.0% |
| !!! | AATTTTCTTCTTATAATCCA+CGG | - | tig0025788:29582-29601 | Msa1424690:intron | 20.0% |
| !! | TAAAACTTTCAAACTAATGT+TGG | + | tig0025788:29714-29733 | None:intergenic | 20.0% |
| !!! | TGAACTAAGTTTTAAGATAA+GGG | + | tig0025788:29783-29802 | None:intergenic | 20.0% |
| !!! | ATGAACTAAGTTTTAAGATA+AGG | + | tig0025788:29784-29803 | None:intergenic | 20.0% |
| !!! | TTAATACCATCTTAGAATTT+TGG | + | tig0025788:29826-29845 | None:intergenic | 20.0% |
| !!! | AAATTCTAAGATGGTATTAA+AGG | - | tig0025788:29826-29845 | Msa1424690:intron | 20.0% |
| !!! | AATACGTTTTTATTTTACTC+GGG | - | tig0025788:30324-30343 | Msa1424690:intron | 20.0% |
| !!! | AAAAAACTGATTTATATGTG+AGG | + | tig0025788:30490-30509 | None:intergenic | 20.0% |
| !!! | ATCACTCATATAGTTTTTAT+TGG | - | tig0025788:30709-30728 | Msa1424690:intron | 20.0% |
| !!! | CTAATAATTAAATTTGTTGC+AGG | - | tig0025788:30771-30790 | Msa1424690:intron | 20.0% |
| !!! | AACAAAGTATTATAGATACA+TGG | - | tig0025788:31109-31128 | Msa1424690:CDS | 20.0% |
| !!! | ACAAAGTATTATAGATACAT+GGG | - | tig0025788:31110-31129 | Msa1424690:CDS | 20.0% |
| !!! | TTTTATAAGACTAAAAATCG+AGG | - | tig0025788:31420-31439 | Msa1424690:CDS | 20.0% |
| !!! | AATCGAGGAAATTTTTTAAA+AGG | - | tig0025788:31435-31454 | Msa1424690:CDS | 20.0% |
| !! | AAAGGACTAAAATAAAAAGT+TGG | - | tig0025788:31453-31472 | Msa1424690:CDS | 20.0% |
| !! | GCAAAATATGAACTAAATTA+GGG | + | tig0025788:31509-31528 | None:intergenic | 20.0% |
| !! | TGCAAAATATGAACTAAATT+AGG | + | tig0025788:31510-31529 | None:intergenic | 20.0% |
| !! | TTCATGCTTATTACAATTAA+AGG | + | tig0025788:31779-31798 | None:intergenic | 20.0% |
| ! | ATTTGATATATAGGATAGTG+GGG | + | tig0025788:28511-28530 | None:intergenic | 25.0% |
| !! | TAATTTACAACTAGCTTAGA+GGG | + | tig0025788:28541-28560 | None:intergenic | 25.0% |
| !! | TTAATTTACAACTAGCTTAG+AGG | + | tig0025788:28542-28561 | None:intergenic | 25.0% |
| ! | ACAAAACAGCTAAGAAAAAA+AGG | + | tig0025788:28669-28688 | None:intergenic | 25.0% |
| ! | ACTAAGTTCAATTATGATGA+AGG | - | tig0025788:28859-28878 | Msa1424690:intron | 25.0% |
| ! | CTAAGTTCAATTATGATGAA+GGG | - | tig0025788:28860-28879 | Msa1424690:intron | 25.0% |
| ! | AGTGTTCAAATATCCAATTT+AGG | - | tig0025788:28982-29001 | Msa1424690:intron | 25.0% |
| !!! | TTTTTAAGAGTTGCATTAGA+GGG | + | tig0025788:29030-29049 | None:intergenic | 25.0% |
| ! | TAATGCAACTCTTAAAAACA+GGG | - | tig0025788:29032-29051 | Msa1424690:CDS | 25.0% |
| ! | GTAAATGTGCAAAAAACAAA+AGG | + | tig0025788:29433-29452 | None:intergenic | 25.0% |
| ! | CATGATTTGAATTGATGTTA+TGG | + | tig0025788:29618-29637 | None:intergenic | 25.0% |
| ! | TCATTACTTACAAACATATG+TGG | + | tig0025788:29757-29776 | None:intergenic | 25.0% |
| ! | CATATGTTTGTAAGTAATGA+CGG | - | tig0025788:29757-29776 | Msa1424690:intron | 25.0% |
| ! | GTGATTATACAAATTGATAG+TGG | + | tig0025788:30080-30099 | None:intergenic | 25.0% |
| ! | ACTTAATCAGTCAATTTGAA+AGG | - | tig0025788:30098-30117 | Msa1424690:intron | 25.0% |
| !! | AATTTACTTAACGTGTCATT+TGG | + | tig0025788:30210-30229 | None:intergenic | 25.0% |
| !!! | GCTCGTTCTATTTTTAAAAT+AGG | + | tig0025788:30350-30369 | None:intergenic | 25.0% |
| ! | AAAAGGTTATATCTCATCTA+AGG | + | tig0025788:30418-30437 | None:intergenic | 25.0% |
| !! | GATGAGATATAACCTTTTAT+TGG | - | tig0025788:30420-30439 | Msa1424690:intron | 25.0% |
| !!! | TTTTTTTTTTTTTTGGTGGC+TGG | - | tig0025788:30506-30525 | Msa1424690:intron | 25.0% |
| !!! | TTTTTTTTTTTTTGGTGGCT+GGG | - | tig0025788:30507-30526 | Msa1424690:intron | 25.0% |
| !!! | AACACCATACAGTTTTTTTT+TGG | - | tig0025788:30635-30654 | Msa1424690:intron | 25.0% |
| ! | TAAGCCAAAAAAAAACTGTA+TGG | + | tig0025788:30642-30661 | None:intergenic | 25.0% |
| ! | GTGTTGAAATTAATCTGATT+AGG | + | tig0025788:31089-31108 | None:intergenic | 25.0% |
| !! | TATACTCTTTTCAAATGACT+AGG | - | tig0025788:31295-31314 | Msa1424690:intron | 25.0% |
| ! | GTCTATAGATTCTTCTATTT+AGG | - | tig0025788:31745-31764 | Msa1424690:CDS | 25.0% |
| TGTTCGGAATAAAAAGTTGT+AGG | + | tig0025788:28761-28780 | None:intergenic | 30.0% | |
| ! | ATATTTGATGACATTTGCAG+AGG | - | tig0025788:28831-28850 | Msa1424690:intron | 30.0% |
| ! | GAATGGTTTTTGTGCAAAAA+TGG | - | tig0025788:28925-28944 | Msa1424690:intron | 30.0% |
| !! | GTTTTTAAGAGTTGCATTAG+AGG | + | tig0025788:29031-29050 | None:intergenic | 30.0% |
| CTAATGCAACTCTTAAAAAC+AGG | - | tig0025788:29031-29050 | Msa1424690:CDS | 30.0% | |
| AATGCAACTCTTAAAAACAG+GGG | - | tig0025788:29033-29052 | Msa1424690:CDS | 30.0% | |
| TCAAGCTATCTACAAATTGA+TGG | - | tig0025788:29191-29210 | Msa1424690:CDS | 30.0% | |
| ACTCACATCGAACATAATTA+AGG | - | tig0025788:29530-29549 | Msa1424690:CDS | 30.0% | |
| CTCACATCGAACATAATTAA+GGG | - | tig0025788:29531-29550 | Msa1424690:CDS | 30.0% | |
| !! | AGGGAATGAAAATTTTTGGA+AGG | - | tig0025788:29550-29569 | Msa1424690:CDS | 30.0% |
| ! | GATCAACCAAAATTCTAAGA+TGG | - | tig0025788:29817-29836 | Msa1424690:intron | 30.0% |
| !!! | TTTTTAATTTAAGTGGGGGT+GGG | + | tig0025788:29968-29987 | None:intergenic | 30.0% |
| !!! | TTTTTTAATTTAAGTGGGGG+TGG | + | tig0025788:29969-29988 | None:intergenic | 30.0% |
| ! | AATCCAAGAAACGATTAGTT+TGG | - | tig0025788:30456-30475 | Msa1424690:intron | 30.0% |
| TTTCCAAACTAATCGTTTCT+TGG | + | tig0025788:30462-30481 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTTTGGTGGCTG+GGG | - | tig0025788:30508-30527 | Msa1424690:intron | 30.0% |
| GTATGGACATAATATATGCA+AGG | + | tig0025788:30547-30566 | None:intergenic | 30.0% | |
| !!! | TGGTGTTTTAGAATTTGGAT+TGG | + | tig0025788:30622-30641 | None:intergenic | 30.0% |
| !!! | CTGTATGGTGTTTTAGAATT+TGG | + | tig0025788:30627-30646 | None:intergenic | 30.0% |
| CTATAACTACCCAACTATAT+GGG | + | tig0025788:30739-30758 | None:intergenic | 30.0% | |
| ACTATAACTACCCAACTATA+TGG | + | tig0025788:30740-30759 | None:intergenic | 30.0% | |
| !! | ATTGGAGTATTGTACACAAT+TGG | - | tig0025788:30848-30867 | Msa1424690:intron | 30.0% |
| TAAGTTACCAATGACAAGAA+TGG | + | tig0025788:30884-30903 | None:intergenic | 30.0% | |
| ! | AAGTAACATTTTCACTGCAT+GGG | + | tig0025788:31151-31170 | None:intergenic | 30.0% |
| TACTTGGACAGTAATTAAAG+AGG | - | tig0025788:31166-31185 | Msa1424690:CDS | 30.0% | |
| TAAATGTGGCCAATTAAACT+AGG | + | tig0025788:31228-31247 | None:intergenic | 30.0% | |
| AAGTTAAGGTATATTGTGGT+TGG | + | tig0025788:31609-31628 | None:intergenic | 30.0% | |
| TGCAAAGTTAAGGTATATTG+TGG | + | tig0025788:31613-31632 | None:intergenic | 30.0% | |
| ACAATATACCTTAACTTTGC+AGG | - | tig0025788:31612-31631 | Msa1424690:intron | 30.0% | |
| ! | GGTTTTCTTATCATACTCAT+GGG | + | tig0025788:31711-31730 | None:intergenic | 30.0% |
| ! | AGGTTTTCTTATCATACTCA+TGG | + | tig0025788:31712-31731 | None:intergenic | 30.0% |
| TATAGACTATGATGAAGACT+AGG | + | tig0025788:31732-31751 | None:intergenic | 30.0% | |
| ! | ATTTTACAGTGCATAGAACA+TGG | + | tig0025788:31836-31855 | None:intergenic | 30.0% |
| CAAATTCTTGAGACATTGCT+GGG | + | tig0025788:28634-28653 | None:intergenic | 35.0% | |
| TTGCACAAAAACCATTCGTT+GGG | + | tig0025788:28922-28941 | None:intergenic | 35.0% | |
| TTTGCACAAAAACCATTCGT+TGG | + | tig0025788:28923-28942 | None:intergenic | 35.0% | |
| CTCTGATCACTCAAATCAAT+TGG | + | tig0025788:28964-28983 | None:intergenic | 35.0% | |
| GGATTGTAATTGATCTGAAG+TGG | + | tig0025788:29009-29028 | None:intergenic | 35.0% | |
| ATGAACTTCTACAGTTCCAT+TGG | - | tig0025788:29222-29241 | Msa1424690:CDS | 35.0% | |
| TATGTACCTTACACCATTGA+TGG | + | tig0025788:29267-29286 | None:intergenic | 35.0% | |
| GGCTTCATGACTTTCTTATA+AGG | - | tig0025788:29393-29412 | Msa1424690:intron | 35.0% | |
| GTTATGGATTTAATTCACCG+TGG | + | tig0025788:29602-29621 | None:intergenic | 35.0% | |
| !! | TATACTCTAGTTCTACTCTC+TGG | - | tig0025788:30032-30051 | Msa1424690:intron | 35.0% |
| ACATAATATATGCAAGGTCC+GGG | + | tig0025788:30541-30560 | None:intergenic | 35.0% | |
| GACATAATATATGCAAGGTC+CGG | + | tig0025788:30542-30561 | None:intergenic | 35.0% | |
| TATGTGCTTGTGAGCTTAAT+TGG | + | tig0025788:30569-30588 | None:intergenic | 35.0% | |
| TATTGGATCACCCATATAGT+TGG | - | tig0025788:30726-30745 | Msa1424690:intron | 35.0% | |
| ATTGGATCACCCATATAGTT+GGG | - | tig0025788:30727-30746 | Msa1424690:intron | 35.0% | |
| ! | GTTCGATCTAGAGTTACATT+TGG | - | tig0025788:30793-30812 | Msa1424690:intron | 35.0% |
| !! | ATCACTGCTGTTTCATTCAA+TGG | + | tig0025788:30830-30849 | None:intergenic | 35.0% |
| TTGAATGAAACAGCAGTGAT+TGG | - | tig0025788:30830-30849 | Msa1424690:intron | 35.0% | |
| AAACTTGTACTAGATCACAC+TGG | + | tig0025788:30921-30940 | None:intergenic | 35.0% | |
| CATATAGTTGGAAGATGACT+TGG | - | tig0025788:31010-31029 | Msa1424690:intron | 35.0% | |
| GCAATTTCTAATAACACTGC+CGG | - | tig0025788:31035-31054 | Msa1424690:intron | 35.0% | |
| CAATTTCTAATAACACTGCC+GGG | - | tig0025788:31036-31055 | Msa1424690:intron | 35.0% | |
| AATTTCTAATAACACTGCCG+GGG | - | tig0025788:31037-31056 | Msa1424690:intron | 35.0% | |
| ! | AGTAACATTTTCACTGCATG+GGG | + | tig0025788:31150-31169 | None:intergenic | 35.0% |
| ! | CAAGTAACATTTTCACTGCA+TGG | + | tig0025788:31152-31171 | None:intergenic | 35.0% |
| CATGCAGTGAAAATGTTACT+TGG | - | tig0025788:31150-31169 | Msa1424690:CDS | 35.0% | |
| CTCCACTTACCTAGTTTAAT+TGG | - | tig0025788:31216-31235 | Msa1424690:intron | 35.0% | |
| TGGGAAAGATAGCTAGTAAA+AGG | + | tig0025788:31267-31286 | None:intergenic | 35.0% | |
| TAAGGTATATTGTGGTTGGT+TGG | + | tig0025788:31605-31624 | None:intergenic | 35.0% | |
| TTCATAGTCCTGCAAAGTTA+AGG | + | tig0025788:31623-31642 | None:intergenic | 35.0% | |
| AATGGCAAAGCTTACTTCAC+TGG | - | tig0025788:28562-28581 | Msa1424690:three_prime_UTR | 40.0% | |
| CCAAATTCTTGAGACATTGC+TGG | + | tig0025788:28635-28654 | None:intergenic | 40.0% | |
| CCAGCAATGTCTCAAGAATT+TGG | - | tig0025788:28632-28651 | Msa1424690:three_prime_UTR | 40.0% | |
| GGTTTAATGTGTCCCCAATT+CGG | + | tig0025788:28901-28920 | None:intergenic | 40.0% | |
| GACACATTAAACCCAACGAA+TGG | - | tig0025788:28908-28927 | Msa1424690:intron | 40.0% | |
| ! | GATCTGAAGTGGTCCTAAAT+TGG | + | tig0025788:28998-29017 | None:intergenic | 40.0% |
| AACACACCATCAATGGTGTA+AGG | - | tig0025788:29258-29277 | Msa1424690:CDS | 40.0% | |
| TAGTTCTCCCCAAAGTTTGA+GGG | - | tig0025788:29854-29873 | Msa1424690:intron | 40.0% | |
| !!! | TTTTTGAGGCCCATCGTTTT+TGG | + | tig0025788:29933-29952 | None:intergenic | 40.0% |
| TATTTCATAGGAACGACCCT+GGG | - | tig0025788:30374-30393 | Msa1424690:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+GGG | + | tig0025788:30540-30559 | None:intergenic | 40.0% | |
| GCTTGTGAGCTTAATTGGTA+TGG | + | tig0025788:30564-30583 | None:intergenic | 40.0% | |
| GCTCACAAGCACATACAAAT+TGG | - | tig0025788:30574-30593 | Msa1424690:intron | 40.0% | |
| ACCAATGACAAGAATGGATC+TGG | + | tig0025788:30878-30897 | None:intergenic | 40.0% | |
| ! | ATAGTTGGAAGATGACTTGG+AGG | - | tig0025788:31013-31032 | Msa1424690:intron | 40.0% |
| ! | GTAACATTTTCACTGCATGG+GGG | + | tig0025788:31149-31168 | None:intergenic | 40.0% |
| GGCCAATTAAACTAGGTAAG+TGG | + | tig0025788:31221-31240 | None:intergenic | 40.0% | |
| TGCACTAAGCGGTTGTTTAA+TGG | + | tig0025788:31667-31686 | None:intergenic | 40.0% | |
| TTAGTGCAGCTGAACTGTTA+TGG | - | tig0025788:31679-31698 | Msa1424690:intron | 40.0% | |
| !! | GAAGTGTCACTCTAGAATTC+AGG | - | tig0025788:31796-31815 | Msa1424690:exon | 40.0% |
| !! | AGTGGGGTGTTGTACTGAAA+AGG | + | tig0025788:28495-28514 | None:intergenic | 45.0% |
| CTGGGCATGATGAAAGCAAA+AGG | + | tig0025788:28616-28635 | None:intergenic | 45.0% | |
| TTAATGTGTCCCCAATTCGG+TGG | + | tig0025788:28898-28917 | None:intergenic | 45.0% | |
| AAACAGGGGTCATGATGTCA+AGG | - | tig0025788:29047-29066 | Msa1424690:intron | 45.0% | |
| GTTCAGATGGAGTATGCCAA+TGG | + | tig0025788:29241-29260 | None:intergenic | 45.0% | |
| !! | CCATTGATGGTGTGTTCAGA+TGG | + | tig0025788:29254-29273 | None:intergenic | 45.0% |
| CCATCTGAACACACCATCAA+TGG | - | tig0025788:29251-29270 | Msa1424690:CDS | 45.0% | |
| ! | CTAGTTCTCCCCAAAGTTTG+AGG | - | tig0025788:29853-29872 | Msa1424690:intron | 45.0% |
| TGTACACGCCCTCAAACTTT+GGG | + | tig0025788:29865-29884 | None:intergenic | 45.0% | |
| ! | AAAGTTTGAGGGCGTGTACA+GGG | - | tig0025788:29865-29884 | Msa1424690:intron | 45.0% |
| AACTGAGCCTCCAAAAACGA+TGG | - | tig0025788:29920-29939 | Msa1424690:intron | 45.0% | |
| ACTGAGCCTCCAAAAACGAT+GGG | - | tig0025788:29921-29940 | Msa1424690:intron | 45.0% | |
| GAACGAGCCTCCTATTTCAT+AGG | - | tig0025788:30362-30381 | Msa1424690:intron | 45.0% | |
| GGTCGTTCCTATGAAATAGG+AGG | + | tig0025788:30372-30391 | None:intergenic | 45.0% | |
| CAGGGTCGTTCCTATGAAAT+AGG | + | tig0025788:30375-30394 | None:intergenic | 45.0% | |
| CTATTTCATAGGAACGACCC+TGG | - | tig0025788:30373-30392 | Msa1424690:intron | 45.0% | |
| AGACTTTCAATACACGCCCA+GGG | + | tig0025788:30393-30412 | None:intergenic | 45.0% | |
| AAGACTTTCAATACACGCCC+AGG | + | tig0025788:30394-30413 | None:intergenic | 45.0% | |
| GCCAGATCCATTCTTGTCAT+TGG | - | tig0025788:30874-30893 | Msa1424690:intron | 45.0% | |
| GAACAGCAGCTTGAAGCAAT+TGG | + | tig0025788:31346-31365 | None:intergenic | 45.0% | |
| CGGTTGTTTAATGGCTGCAA+TGG | + | tig0025788:31658-31677 | None:intergenic | 45.0% | |
| AACAGTTCAGCTGCACTAAG+CGG | + | tig0025788:31678-31697 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTATTCATATTTA+GGG | + | tig0025788:28702-28721 | None:intergenic | 5.0% |
| !!! | ATTTTTTTTTATTCATATTT+AGG | + | tig0025788:28703-28722 | None:intergenic | 5.0% |
| !!! | ATTTGTTATTTATTTTTTTA+GGG | + | tig0025788:29680-29699 | None:intergenic | 5.0% |
| !!! | TATTTGTTATTTATTTTTTT+AGG | + | tig0025788:29681-29700 | None:intergenic | 5.0% |
| TATGATGAAGGGAGTCCGCT+AGG | - | tig0025788:28871-28890 | Msa1424690:intron | 50.0% | |
| GTACACGCCCTCAAACTTTG+GGG | + | tig0025788:29864-29883 | None:intergenic | 50.0% | |
| CTGTACACGCCCTCAAACTT+TGG | + | tig0025788:29866-29885 | None:intergenic | 50.0% | |
| ! | CAAAGTTTGAGGGCGTGTAC+AGG | - | tig0025788:29864-29883 | Msa1424690:intron | 50.0% |
| !! | TTGAGGCCCATCGTTTTTGG+AGG | + | tig0025788:29930-29949 | None:intergenic | 50.0% |
| TTTCCCCTTTCCTACGACGT+AGG | - | tig0025788:30175-30194 | Msa1424690:intron | 50.0% | |
| ACTCCTACGTCGTAGGAAAG+GGG | + | tig0025788:30181-30200 | None:intergenic | 50.0% | |
| CACTCCTACGTCGTAGGAAA+GGG | + | tig0025788:30182-30201 | None:intergenic | 50.0% | |
| TCACTCCTACGTCGTAGGAA+AGG | + | tig0025788:30183-30202 | None:intergenic | 50.0% | |
| GAATGTCACTCCTACGTCGT+AGG | + | tig0025788:30188-30207 | None:intergenic | 50.0% | |
| CAGCTGAACTGTTATGGAGC+TGG | - | tig0025788:31685-31704 | Msa1424690:intron | 50.0% | |
| TCCGCTAGGACCACCGAATT+GGG | - | tig0025788:28885-28904 | Msa1424690:intron | 55.0% | |
| AGAACCTCTTGCACTCCCCA+GGG | + | tig0025788:29896-29915 | None:intergenic | 55.0% | |
| TAGAACCTCTTGCACTCCCC+AGG | + | tig0025788:29897-29916 | None:intergenic | 55.0% | |
| GTCCGCTAGGACCACCGAAT+TGG | - | tig0025788:28884-28903 | Msa1424690:intron | 60.0% | |
| ! | CCCCAATTCGGTGGTCCTAG+CGG | + | tig0025788:28889-28908 | None:intergenic | 60.0% |
| CCGCTAGGACCACCGAATTG+GGG | - | tig0025788:28886-28905 | Msa1424690:intron | 60.0% | |
| ! | TTTGAGGGCGTGTACAGGGC+CGG | - | tig0025788:29869-29888 | Msa1424690:intron | 60.0% |
| ACCCACTGCGCTTTCTTCCC+CGG | + | tig0025788:31057-31076 | None:intergenic | 60.0% | |
| CTCTTGCACTCCCCAGGGTC+CGG | + | tig0025788:29891-29910 | None:intergenic | 65.0% | |
| ! | TGCCGGGGAAGAAAGCGCAG+TGG | - | tig0025788:31052-31071 | Msa1424690:intron | 65.0% |
| ! | GCCGGGGAAGAAAGCGCAGT+GGG | - | tig0025788:31053-31072 | Msa1424690:intron | 65.0% |
| CGTGTACAGGGCCGGACCCT+GGG | - | tig0025788:29877-29896 | Msa1424690:intron | 70.0% | |
| GTGTACAGGGCCGGACCCTG+GGG | - | tig0025788:29878-29897 | Msa1424690:intron | 70.0% | |
| ! | CGGACCCTGGGGAGTGCAAG+AGG | - | tig0025788:29889-29908 | Msa1424690:intron | 70.0% |
| GGTGGCTGGGGTTCGAACCC+CGG | - | tig0025788:30520-30539 | Msa1424690:intron | 70.0% | |
| GCGTGTACAGGGCCGGACCC+TGG | - | tig0025788:29876-29895 | Msa1424690:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025788 | gene | 28490 | 31886 | 28490 | ID=Msa1424690;Name=Msa1424690 |
| tig0025788 | mRNA | 28490 | 31886 | 28490 | ID=Msa1424690-mRNA-1;Parent=Msa1424690;Name=Msa1424690-mRNA-1;_AED=0.08;_eAED=0.08;_QI=73|1|1|1|1|1|7|172|274 |
| tig0025788 | exon | 28490 | 28742 | 28490 | ID=Msa1424690-mRNA-1:exon:3917;Parent=Msa1424690-mRNA-1 |
| tig0025788 | exon | 29006 | 29059 | 29006 | ID=Msa1424690-mRNA-1:exon:3916;Parent=Msa1424690-mRNA-1 |
| tig0025788 | exon | 29189 | 29359 | 29189 | ID=Msa1424690-mRNA-1:exon:3915;Parent=Msa1424690-mRNA-1 |
| tig0025788 | exon | 29481 | 29583 | 29481 | ID=Msa1424690-mRNA-1:exon:3914;Parent=Msa1424690-mRNA-1 |
| tig0025788 | exon | 31097 | 31203 | 31097 | ID=Msa1424690-mRNA-1:exon:3913;Parent=Msa1424690-mRNA-1 |
| tig0025788 | exon | 31308 | 31525 | 31308 | ID=Msa1424690-mRNA-1:exon:3912;Parent=Msa1424690-mRNA-1 |
| tig0025788 | exon | 31723 | 31886 | 31723 | ID=Msa1424690-mRNA-1:exon:3911;Parent=Msa1424690-mRNA-1 |
| tig0025788 | five_prime_UTR | 31814 | 31886 | 31814 | ID=Msa1424690-mRNA-1:five_prime_utr;Parent=Msa1424690-mRNA-1 |
| tig0025788 | CDS | 31723 | 31813 | 31723 | ID=Msa1424690-mRNA-1:cds;Parent=Msa1424690-mRNA-1 |
| tig0025788 | CDS | 31308 | 31525 | 31308 | ID=Msa1424690-mRNA-1:cds;Parent=Msa1424690-mRNA-1 |
| tig0025788 | CDS | 31097 | 31203 | 31097 | ID=Msa1424690-mRNA-1:cds;Parent=Msa1424690-mRNA-1 |
| tig0025788 | CDS | 29481 | 29583 | 29481 | ID=Msa1424690-mRNA-1:cds;Parent=Msa1424690-mRNA-1 |
| tig0025788 | CDS | 29189 | 29359 | 29189 | ID=Msa1424690-mRNA-1:cds;Parent=Msa1424690-mRNA-1 |
| tig0025788 | CDS | 29006 | 29059 | 29006 | ID=Msa1424690-mRNA-1:cds;Parent=Msa1424690-mRNA-1 |
| tig0025788 | CDS | 28662 | 28742 | 28662 | ID=Msa1424690-mRNA-1:cds;Parent=Msa1424690-mRNA-1 |
| tig0025788 | three_prime_UTR | 28490 | 28661 | 28490 | ID=Msa1424690-mRNA-1:three_prime_utr;Parent=Msa1424690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
