AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0147560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0147560 MtrunA17_Chr1g0156911 81.844 358 16 1 5 313 1 358 0.0 588
Msa0147560 MtrunA17_Chr1g0156901 65.922 358 73 1 4 312 13 370 1.11e-172 483
Msa0147560 MtrunA17_Chr1g0156891 58.356 365 100 3 1 313 1 365 4.00e-149 423
Msa0147560 MtrunA17_Chr1g0156921 55.769 364 109 2 2 313 1 364 7.99e-142 404
Msa0147560 MtrunA17_Chr1g0156931 52.909 361 122 1 1 313 1 361 8.78e-142 404
Msa0147560 MtrunA17_Chr3g0142921 57.183 355 98 3 12 312 3 357 2.73e-140 400
Msa0147560 MtrunA17_Chr3g0142941 54.354 333 103 1 26 309 32 364 1.53e-130 376
Msa0147560 MtrunA17_Chr8g0371491 44.638 345 141 2 18 312 13 357 1.47e-102 304
Msa0147560 MtrunA17_Chr5g0405821 45.304 362 143 6 3 312 8 366 1.54e-102 305
Msa0147560 MtrunA17_Chr5g0405831 43.490 361 150 5 3 312 8 365 2.63e-99 296
Msa0147560 MtrunA17_Chr8g0371481 42.466 365 151 4 2 313 6 364 1.15e-94 285
Msa0147560 MtrunA17_Chr8g0371471 42.582 364 151 4 2 313 6 363 2.06e-94 284
Msa0147560 MtrunA17_Chr1g0157001 37.143 315 150 2 46 312 41 355 1.97e-70 223
Msa0147560 MtrunA17_Chr5g0432101 35.530 349 169 4 5 301 1 345 2.12e-70 223
Msa0147560 MtrunA17_Chr3g0105401 33.903 351 173 3 14 313 9 351 3.41e-69 219
Msa0147560 MtrunA17_Chr5g0438621 36.310 336 156 3 9 294 6 333 4.31e-69 219
Msa0147560 MtrunA17_Chr4g0046151 35.549 346 154 6 12 300 19 352 8.36e-68 216
Msa0147560 MtrunA17_Chr2g0283191 34.682 346 163 7 14 300 15 356 1.84e-67 215
Msa0147560 MtrunA17_Chr2g0320671 36.218 312 149 2 40 301 29 340 2.11e-67 214
Msa0147560 MtrunA17_Chr3g0120861 35.511 352 173 5 14 313 11 360 4.54e-67 214
Msa0147560 MtrunA17_Chr8g0341001 35.783 313 150 3 40 301 31 343 1.61e-66 212
Msa0147560 MtrunA17_Chr5g0438631 35.756 344 160 6 9 300 4 338 2.26e-66 211
Msa0147560 MtrunA17_Chr5g0438641 35.366 328 162 3 36 313 27 354 2.75e-65 209
Msa0147560 MtrunA17_Chr2g0330781 34.824 313 153 3 40 301 30 342 4.38e-64 206
Msa0147560 MtrunA17_Chr5g0437421 33.435 329 164 3 40 313 31 359 1.31e-61 199
Msa0147560 MtrunA17_Chr4g0027521 34.494 316 154 3 40 302 26 341 5.88e-59 192
Msa0147560 MtrunA17_Chr8g0380041 31.395 344 173 6 5 295 1 334 6.34e-52 174
Msa0147560 MtrunA17_Chr2g0285061 32.362 309 153 6 40 295 31 336 1.38e-49 169
Msa0147560 MtrunA17_Chr5g0396511 30.547 311 164 3 43 302 48 357 1.06e-48 167
Msa0147560 MtrunA17_Chr8g0374101 30.028 353 187 7 10 305 8 357 8.00e-48 164
Msa0147560 MtrunA17_Chr3g0086641 29.851 335 175 6 12 294 14 340 1.91e-46 160
Msa0147560 MtrunA17_Chr3g0131321 31.395 344 178 5 16 302 6 348 6.07e-46 159
Msa0147560 MtrunA17_Chr1g0182811 30.000 350 184 4 5 301 4 345 1.08e-45 159
Msa0147560 MtrunA17_Chr3g0077581 28.846 364 195 10 5 310 1 358 1.55e-43 153
Msa0147560 MtrunA17_Chr4g0017431 30.030 333 178 5 16 296 7 336 1.82e-43 152
Msa0147560 MtrunA17_Chr2g0294301 33.121 314 153 7 41 300 35 345 3.23e-43 152
Msa0147560 MtrunA17_Chr3g0077571 29.191 346 178 8 2 296 1 330 4.88e-43 151
Msa0147560 MtrunA17_Chr4g0060811 30.094 319 167 8 43 308 29 344 1.48e-41 147
Msa0147560 MtrunA17_Chr3g0099151 30.818 318 161 7 40 301 86 400 7.29e-41 147
Msa0147560 MtrunA17_Chr7g0275021 30.351 313 164 4 41 301 34 344 9.07e-41 145
Msa0147560 MtrunA17_Chr4g0068441 30.395 329 171 6 31 305 25 349 2.61e-40 144
Msa0147560 MtrunA17_Chr3g0092131 29.154 319 170 8 43 308 25 340 3.33e-40 144
Msa0147560 MtrunA17_Chr5g0434621 31.090 312 159 7 42 301 26 333 4.29e-40 143
Msa0147560 MtrunA17_Chr7g0275011 31.329 316 157 5 41 301 34 344 5.90e-40 143
Msa0147560 MtrunA17_Chr2g0294311 31.348 319 154 8 40 296 31 346 2.86e-39 142
Msa0147560 MtrunA17_Chr7g0275001 30.769 325 169 4 41 310 25 348 6.38e-39 140
Msa0147560 MtrunA17_Chr1g0189901 30.671 313 163 5 41 301 31 341 9.75e-39 140
Msa0147560 MtrunA17_Chr4g0008851 31.111 315 161 7 41 301 32 344 4.14e-38 138
Msa0147560 MtrunA17_Chr3g0099161 29.338 317 166 6 40 301 91 404 9.10e-38 139
Msa0147560 MtrunA17_Chr1g0189891 31.529 314 154 7 41 301 29 334 2.06e-37 136
Msa0147560 MtrunA17_Chr6g0457921 31.132 318 163 7 38 301 25 340 3.17e-37 136
Msa0147560 MtrunA17_Chr7g0229581 45.588 136 73 1 167 301 8 143 6.17e-37 129
Msa0147560 MtrunA17_Chr6g0463261 79.747 79 16 0 93 171 3 81 3.73e-36 126
Msa0147560 MtrunA17_Chr7g0274991 29.781 319 170 6 35 301 27 343 8.33e-36 132
Msa0147560 MtrunA17_Chr4g0027571 43.448 145 78 2 161 301 66 210 1.34e-35 128
Msa0147560 MtrunA17_Chr1g0189931 30.793 328 164 7 41 310 32 354 2.46e-35 131
Msa0147560 MtrunA17_Chr5g0420811 28.657 335 174 11 15 299 11 330 2.79e-35 130
Msa0147560 MtrunA17_Chr8g0349331 31.786 280 167 8 41 300 35 310 8.55e-35 129
Msa0147560 MtrunA17_Chr3g0099231 30.938 320 156 10 40 301 27 339 4.42e-34 128
Msa0147560 MtrunA17_Chr5g0444401 29.874 318 163 7 40 301 27 340 1.65e-33 126
Msa0147560 MtrunA17_Chr2g0284951 28.490 351 182 10 16 312 8 343 3.80e-33 125
Msa0147560 MtrunA17_Chr8g0380031 27.244 312 162 8 40 299 83 381 3.53e-32 123
Msa0147560 MtrunA17_Chr3g0085881 28.754 313 154 10 40 299 32 328 3.84e-32 122
Msa0147560 MtrunA17_Chr2g0284921 27.301 326 171 8 40 311 33 346 8.19e-32 121
Msa0147560 MtrunA17_Chr2g0284941 30.159 315 176 11 16 297 8 311 8.71e-32 121
Msa0147560 MtrunA17_Chr2g0285001 29.503 322 162 12 37 304 29 339 3.13e-31 120
Msa0147560 MtrunA17_Chr8g0344941 27.778 342 181 10 19 302 20 353 3.96e-31 120
Msa0147560 MtrunA17_Chr8g0349321 28.242 347 188 11 6 300 5 342 4.34e-31 119
Msa0147560 MtrunA17_Chr7g0229591 38.415 164 92 1 9 172 7 161 1.43e-30 114
Msa0147560 MtrunA17_Chr8g0349341 27.139 339 189 9 14 300 10 342 4.39e-30 117
Msa0147560 MtrunA17_Chr2g0301641 26.822 343 189 7 13 298 15 352 1.01e-29 116
Msa0147560 MtrunA17_Chr7g0215961 26.875 320 161 7 37 301 29 330 1.04e-29 115
Msa0147560 MtrunA17_Chr6g0469511 46.847 111 59 0 40 150 29 139 5.85e-27 103
Msa0147560 MtrunA17_Chr3g0104821 29.268 328 165 11 39 301 42 367 6.48e-27 108
Msa0147560 MtrunA17_Chr8g0370951 28.409 352 165 12 11 294 7 339 1.22e-26 107
Msa0147560 MtrunA17_Chr8g0344931 27.434 339 175 11 13 294 8 332 3.16e-26 106
Msa0147560 MtrunA17_Chr4g0027561 43.200 125 62 1 9 133 7 122 3.51e-26 101
Msa0147560 MtrunA17_Chr4g0018571 36.747 166 100 2 141 301 1 166 3.52e-26 102
Msa0147560 MtrunA17_Chr8g0349301 27.653 311 163 9 13 271 7 307 9.92e-26 104
Msa0147560 MtrunA17_Chr4g0057991 26.420 352 191 11 17 306 16 361 8.92e-25 102
Msa0147560 MtrunA17_Chr8g0370981 24.685 397 182 11 13 306 20 402 9.78e-24 100
Msa0147560 MtrunA17_Chr6g0469521 38.583 127 73 2 165 286 26 152 1.05e-23 94.7
Msa0147560 MtrunA17_Chr2g0284991 36.986 146 88 3 16 160 8 150 3.05e-23 98.6
Msa0147560 MtrunA17_Chr2g0317271 29.052 327 154 13 38 301 27 338 3.37e-23 98.2
Msa0147560 MtrunA17_Chr2g0301541 28.349 321 154 12 39 298 32 337 4.01e-23 97.8
Msa0147560 MtrunA17_Chr3g0085231 27.859 341 166 12 14 299 12 327 4.69e-23 97.8
Msa0147560 MtrunA17_Chr0c01g0489581 28.746 327 155 13 38 301 27 338 9.67e-23 97.1
Msa0147560 MtrunA17_Chr2g0317261 28.746 327 155 13 38 301 27 338 9.96e-23 96.7
Msa0147560 MtrunA17_Chr2g0301581 28.037 321 155 12 39 298 32 337 1.24e-22 96.7
Msa0147560 MtrunA17_Chr3g0112821 27.900 319 167 11 39 298 28 342 1.48e-22 96.3
Msa0147560 MtrunA17_Chr0c01g0489571 28.746 327 155 13 38 301 27 338 2.16e-22 95.9
Msa0147560 MtrunA17_Chr1g0160011 26.344 372 192 13 1 300 1 362 3.01e-22 95.9
Msa0147560 MtrunA17_Chr2g0283481 24.642 349 197 10 17 301 23 369 4.24e-22 95.5
Msa0147560 MtrunA17_Chr1g0178931 24.534 322 181 11 42 313 38 347 1.14e-21 93.6
Msa0147560 MtrunA17_Chr2g0321991 43.860 114 58 4 15 127 11 119 4.14e-21 87.0
Msa0147560 MtrunA17_Chr1g0160031 26.075 372 186 13 3 302 9 363 6.25e-21 92.0
Msa0147560 MtrunA17_Chr8g0381581 25.220 341 171 10 36 300 35 367 1.60e-20 90.9
Msa0147560 MtrunA17_Chr2g0283511 26.316 323 168 11 46 301 36 355 2.12e-20 90.5
Msa0147560 MtrunA17_Chr1g0189921 51.724 87 41 1 41 127 31 116 2.59e-20 85.9
Msa0147560 MtrunA17_Chr3g0093031 27.778 324 166 13 39 298 28 347 6.42e-20 89.0
Msa0147560 MtrunA17_Chr4g0027581 34.932 146 72 2 179 301 38 183 2.17e-19 84.7
Msa0147560 MtrunA17_Chr7g0226941 27.381 336 162 11 35 296 27 354 3.45e-19 87.0
Msa0147560 MtrunA17_Chr7g0273101 24.478 335 177 9 39 302 27 356 3.59e-19 87.0
Msa0147560 MtrunA17_Chr7g0266061 25.776 322 171 14 42 307 43 352 3.31e-18 84.0
Msa0147560 MtrunA17_Chr5g0440501 35.000 140 85 2 171 304 91 230 3.52e-18 82.4
Msa0147560 MtrunA17_Chr6g0455661 48.980 98 46 3 40 137 30 123 4.63e-18 84.3
Msa0147560 MtrunA17_Chr6g0455661 34.848 132 82 3 172 302 324 452 2.04e-16 79.3
Msa0147560 MtrunA17_Chr7g0226911 24.274 379 178 13 11 301 8 365 5.55e-18 83.6
Msa0147560 MtrunA17_Chr1g0198351 26.367 311 162 12 36 294 38 333 5.24e-17 80.5
Msa0147560 MtrunA17_Chr6g0459921 34.307 137 86 3 167 302 208 341 2.86e-16 78.6
Msa0147560 MtrunA17_Chr8g0347751 28.042 189 122 4 127 305 183 367 4.86e-16 78.2
Msa0147560 MtrunA17_Chr1g0198381 25.617 324 166 12 42 307 3 309 1.41e-15 75.9
Msa0147560 MtrunA17_Chr7g0226931 23.410 393 195 15 1 301 1 379 2.18e-15 76.3
Msa0147560 MtrunA17_Chr7g0275291 22.740 365 187 13 13 301 11 356 4.01e-15 75.1
Msa0147560 MtrunA17_Chr3g0104801 32.584 178 104 6 1 168 1 172 7.22e-15 71.6
Msa0147560 MtrunA17_Chr8g0370961 30.147 136 89 3 172 305 95 226 8.11e-15 72.8
Msa0147560 MtrunA17_Chr1g0178941 25.153 326 180 13 42 310 41 359 1.10e-14 73.9
Msa0147560 MtrunA17_Chr5g0432081 50.000 58 29 0 244 301 3 60 1.39e-14 68.2
Msa0147560 MtrunA17_Chr8g0370971 38.095 105 61 1 40 140 37 141 2.28e-14 69.7
Msa0147560 MtrunA17_Chr1g0159991 29.861 144 86 4 172 300 217 360 1.38e-13 70.9
Msa0147560 MtrunA17_Chr2g0301571 25.926 270 127 11 90 298 36 293 3.51e-13 68.9
Msa0147560 MtrunA17_Chr2g0301551 25.185 270 129 10 90 298 36 293 5.16e-13 68.6
Msa0147560 MtrunA17_Chr3g0104831 32.727 110 66 3 200 301 177 286 9.11e-13 67.8
Msa0147560 MtrunA17_Chr4g0018561 54.902 51 23 0 40 90 29 79 1.74e-12 62.8
Msa0147560 MtrunA17_Chr2g0308201 49.367 79 31 2 14 92 16 85 2.27e-12 62.4
Msa0147560 MtrunA17_Chr1g0159981 29.861 144 86 2 172 300 227 370 3.91e-12 66.2
Msa0147560 MtrunA17_Chr1g0160101 29.167 144 87 3 172 300 224 367 4.10e-12 66.2
Msa0147560 MtrunA17_Chr7g0254461 27.333 150 91 4 167 298 220 369 5.35e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0147560 AT1G75880.2 48.276 348 130 2 15 312 26 373 4.35e-113 332
Msa0147560 AT1G75880.1 48.138 349 130 3 15 312 26 374 2.10e-111 328
Msa0147560 AT1G75900.1 44.915 354 139 3 9 313 18 364 1.62e-107 318
Msa0147560 AT1G75890.2 44.509 346 140 4 15 309 22 366 1.43e-104 310
Msa0147560 AT1G75890.3 44.509 346 140 4 15 309 51 395 3.15e-104 310
Msa0147560 AT5G42170.1 44.144 333 139 2 28 313 37 369 1.76e-103 307
Msa0147560 AT1G75890.1 42.897 359 140 5 15 309 22 379 1.01e-100 301
Msa0147560 AT3G14820.1 42.735 351 148 4 5 308 1 345 5.10e-98 293
Msa0147560 AT1G59406.1 44.058 345 141 5 13 309 5 345 2.79e-97 291
Msa0147560 AT1G59030.1 44.058 345 141 5 13 309 5 345 2.79e-97 291
Msa0147560 AT1G58725.1 44.058 345 141 5 13 309 5 345 2.79e-97 291
Msa0147560 AT1G20132.1 42.945 326 136 2 36 311 56 381 3.16e-89 271
Msa0147560 AT1G58520.3 43.478 322 126 5 36 309 25 338 1.51e-87 266
Msa0147560 AT1G58525.1 43.478 322 126 5 36 309 25 338 1.51e-87 266
Msa0147560 AT3G43570.1 40.525 343 126 5 14 309 5 316 1.08e-85 260
Msa0147560 AT1G20120.1 41.441 333 141 4 29 311 66 394 3.11e-84 259
Msa0147560 AT2G31540.1 38.710 341 155 6 12 300 8 346 5.73e-75 234
Msa0147560 AT2G30310.1 39.144 327 138 4 39 313 32 349 2.39e-74 233
Msa0147560 AT2G40250.1 37.003 327 152 2 35 307 30 356 1.85e-73 230
Msa0147560 AT1G06990.1 34.341 364 182 5 1 313 2 359 5.34e-73 229
Msa0147560 AT5G03810.1 37.700 313 144 3 40 301 29 341 2.71e-72 227
Msa0147560 AT2G30220.1 38.037 326 147 4 39 309 31 356 1.48e-71 226
Msa0147560 AT2G04570.1 34.957 349 172 3 15 313 7 350 2.97e-71 224
Msa0147560 AT2G24560.1 35.693 339 166 3 14 300 7 345 3.63e-71 224
Msa0147560 AT3G43550.1 42.105 285 117 3 14 251 3 286 4.07e-70 219
Msa0147560 AT1G58430.1 36.283 339 162 4 12 297 6 343 2.11e-69 220
Msa0147560 AT5G45960.1 37.003 327 145 5 32 297 31 357 3.23e-66 212
Msa0147560 AT3G16370.1 36.102 313 149 3 40 301 29 341 1.75e-65 210
Msa0147560 AT5G03820.1 35.987 314 149 3 40 301 32 345 4.77e-65 209
Msa0147560 AT1G73610.1 36.709 316 137 5 36 301 30 332 8.76e-65 207
Msa0147560 AT5G03820.2 35.987 314 149 3 40 301 60 373 1.22e-64 208
Msa0147560 AT5G22810.1 35.873 315 149 3 40 301 33 347 1.63e-64 207
Msa0147560 AT4G26790.1 34.650 329 163 4 31 308 18 345 2.07e-64 207
Msa0147560 AT4G26790.2 34.650 329 163 4 31 308 18 345 2.07e-64 207
Msa0147560 AT1G75920.2 36.527 334 152 4 19 301 7 331 2.26e-62 201
Msa0147560 AT3G53100.1 34.985 323 160 2 37 309 25 347 8.51e-62 200
Msa0147560 AT1G20130.2 34.940 332 159 4 36 310 179 510 2.18e-61 203
Msa0147560 AT1G20130.1 34.940 332 159 4 36 310 199 530 4.28e-61 203
Msa0147560 AT5G63170.1 33.529 340 152 6 9 297 6 322 6.45e-60 195
Msa0147560 AT1G23500.1 35.088 342 160 6 5 297 1 329 6.93e-60 195
Msa0147560 AT2G42990.1 33.333 333 168 3 18 300 9 337 8.45e-60 195
Msa0147560 AT1G75920.1 35.057 348 151 5 19 300 2 340 2.14e-58 191
Msa0147560 AT1G75910.1 34.000 350 165 5 9 306 1 336 1.61e-57 189
Msa0147560 AT1G20135.1 32.595 316 149 6 37 301 25 327 4.29e-54 179
Msa0147560 AT1G75920.4 35.889 287 124 4 66 301 26 303 3.63e-50 169
Msa0147560 AT5G45950.1 30.548 347 178 7 13 301 3 344 1.03e-48 166
Msa0147560 AT2G23540.1 28.329 353 194 5 8 301 13 365 1.43e-48 167
Msa0147560 AT3G50400.1 31.288 326 165 7 38 305 31 355 6.83e-48 165
Msa0147560 AT1G29670.2 30.748 361 187 8 1 304 57 411 1.73e-47 165
Msa0147560 AT1G29670.1 30.548 347 181 7 12 304 3 343 3.76e-47 162
Msa0147560 AT2G24560.2 33.103 290 142 3 14 251 7 296 1.94e-46 159
Msa0147560 AT5G08460.1 32.609 322 160 8 37 303 45 364 1.77e-45 159
Msa0147560 AT4G10950.2 29.073 313 170 3 40 301 70 381 3.98e-45 158
Msa0147560 AT4G18970.1 30.031 323 166 7 40 307 27 344 4.06e-45 157
Msa0147560 AT4G18970.2 30.031 323 166 7 40 307 27 344 9.47e-45 157
Msa0147560 AT5G45670.1 28.818 347 187 6 14 307 6 345 1.19e-44 156
Msa0147560 AT4G28780.1 29.240 342 189 4 11 301 2 341 1.60e-44 155
Msa0147560 AT1G75920.3 31.138 334 139 5 19 301 7 300 3.10e-44 153
Msa0147560 AT5G15720.1 31.579 323 163 7 40 307 29 348 3.49e-43 152
Msa0147560 AT1G71250.1 30.659 349 185 6 5 301 8 351 2.07e-42 150
Msa0147560 AT4G10950.1 29.073 313 166 4 40 301 70 377 2.54e-42 150
Msa0147560 AT1G29660.1 28.487 337 178 5 13 296 10 336 9.19e-42 148
Msa0147560 AT1G71691.2 31.529 314 157 7 40 301 54 361 9.85e-42 149
Msa0147560 AT5G33370.1 32.099 324 160 6 33 301 22 340 2.41e-41 147
Msa0147560 AT1G75930.1 30.861 337 170 7 15 300 6 330 3.37e-41 146
Msa0147560 AT5G37690.1 29.412 340 183 8 14 301 1 335 1.93e-40 145
Msa0147560 AT5G41890.1 30.028 363 167 11 10 305 14 356 8.65e-40 143
Msa0147560 AT5G18430.1 30.032 313 167 3 41 301 28 340 3.77e-39 141
Msa0147560 AT5G55050.1 30.154 325 170 8 37 305 35 358 4.68e-37 136
Msa0147560 AT2G19060.1 32.399 321 155 12 40 309 29 338 1.32e-36 134
Msa0147560 AT2G19010.2 29.650 371 185 15 1 309 10 366 1.37e-36 135
Msa0147560 AT2G19010.1 31.366 322 155 12 40 309 29 336 1.94e-36 134
Msa0147560 AT1G74460.1 26.462 359 194 9 5 310 1 342 3.62e-36 134
Msa0147560 AT1G71120.1 30.351 313 167 9 36 300 26 335 6.19e-36 133
Msa0147560 AT2G31550.1 34.146 205 84 4 147 300 1 205 6.82e-36 129
Msa0147560 AT5G37690.2 28.529 340 178 9 14 301 1 327 2.34e-35 131
Msa0147560 AT2G19050.1 29.586 338 180 9 15 304 5 332 2.85e-35 131
Msa0147560 AT3G04290.1 29.503 322 171 5 33 301 21 339 2.87e-34 129
Msa0147560 AT2G03980.2 30.723 332 169 13 37 313 39 364 2.90e-33 126
Msa0147560 AT2G03980.3 30.723 332 169 13 37 313 39 364 2.90e-33 126
Msa0147560 AT2G03980.1 30.723 332 169 13 37 313 39 364 2.90e-33 126
Msa0147560 AT2G03980.4 30.723 332 169 13 37 313 39 364 2.90e-33 126
Msa0147560 AT1G53920.1 27.457 346 185 10 7 297 20 354 9.22e-33 125
Msa0147560 AT4G30140.1 27.607 326 154 11 40 306 32 334 1.53e-27 110
Msa0147560 AT5G33370.2 31.022 274 129 6 33 251 22 290 1.27e-26 107
Msa0147560 AT5G15720.2 29.963 267 129 7 40 251 29 292 7.41e-26 105
Msa0147560 AT2G04020.1 44.604 139 71 4 18 154 23 157 7.92e-26 103
Msa0147560 AT2G04020.2 44.604 139 71 4 18 154 23 157 2.17e-25 103
Msa0147560 AT5G40990.1 26.074 326 169 11 41 303 37 353 3.93e-25 103
Msa0147560 AT2G19050.2 29.412 272 138 7 15 238 5 270 1.05e-24 101
Msa0147560 AT1G33811.1 26.404 356 188 11 13 304 6 351 3.18e-24 101
Msa0147560 AT5G15720.3 27.203 261 135 5 102 307 57 317 5.04e-24 100
Msa0147560 AT1G71691.3 28.788 264 130 7 40 251 54 311 1.76e-23 98.6
Msa0147560 AT1G71691.1 35.115 131 83 1 171 301 132 260 3.22e-23 97.4
Msa0147560 AT3G48460.1 26.593 361 196 15 8 305 7 361 7.86e-23 97.8
Msa0147560 AT2G27360.1 28.883 367 169 18 10 300 6 356 1.08e-22 97.4
Msa0147560 AT4G16230.1 38.462 156 88 4 12 164 2 152 1.17e-22 95.1
Msa0147560 AT1G53940.2 25.852 352 190 12 11 298 6 350 3.69e-22 95.9
Msa0147560 AT3G14225.1 25.000 328 174 11 41 303 37 357 1.02e-21 94.7
Msa0147560 AT3G14225.2 25.228 329 168 12 41 303 37 353 2.06e-21 93.6
Msa0147560 AT1G28600.1 27.671 365 168 17 13 301 9 353 2.84e-21 93.6
Msa0147560 AT1G54790.3 23.876 356 189 10 12 296 9 353 3.42e-21 93.2
Msa0147560 AT1G28640.1 27.123 365 178 18 13 305 14 362 2.02e-20 91.3
Msa0147560 AT3G27950.1 26.836 354 181 12 17 302 8 351 4.52e-20 90.1
Msa0147560 AT5G14450.1 25.867 375 197 12 4 305 5 371 9.43e-20 89.4
Msa0147560 AT3G05180.1 26.113 337 167 12 39 301 34 362 1.10e-19 89.0
Msa0147560 AT1G28580.1 26.359 368 183 15 8 301 7 360 3.37e-19 87.4
Msa0147560 AT5G03610.1 25.868 317 167 11 42 303 44 347 3.66e-19 87.0
Msa0147560 AT1G31550.2 26.648 364 170 17 15 301 15 358 1.52e-18 85.9
Msa0147560 AT1G28570.1 27.624 362 185 16 11 301 2 357 5.11e-18 84.3
Msa0147560 AT1G56670.1 24.011 354 189 15 16 301 11 352 2.21e-16 79.3
Msa0147560 AT4G16220.1 45.745 94 47 2 40 133 29 118 2.60e-16 77.4
Msa0147560 AT3G09930.2 25.904 332 176 14 32 309 34 349 1.66e-15 76.6
Msa0147560 AT3G09930.1 25.904 332 176 14 32 309 34 349 1.66e-15 76.6
Msa0147560 AT4G16233.1 35.185 108 68 2 199 305 5 111 1.93e-15 72.4
Msa0147560 AT1G31550.1 25.978 358 177 16 15 301 15 355 2.47e-15 76.3
Msa0147560 AT1G54790.1 23.677 359 191 13 11 296 4 352 4.66e-15 75.5
Msa0147560 AT1G09390.1 24.534 322 175 13 40 301 36 349 3.76e-14 72.8
Msa0147560 AT4G01130.1 23.699 346 170 13 39 303 32 364 5.33e-13 69.3
Msa0147560 AT3G26430.1 36.242 149 80 7 11 154 3 141 3.43e-12 67.0
Msa0147560 AT4G01130.3 24.878 205 130 4 110 296 72 270 9.18e-12 65.1

Find 83 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATATCTTCCAGCATATT+TGG 0.150743 1_4:+7529245 Msa0147560:CDS
AATTCACTAGGCTGAATATT+TGG 0.196854 1_4:-7529270 None:intergenic
ATTCTTTGAATAATTCTATC+TGG 0.217150 1_4:-7529593 None:intergenic
AAGTAGCAGGATTGTTTATA+TGG 0.252807 1_4:+7530587 Msa0147560:CDS
CTGCAATGTTTAGCATAAAT+AGG 0.259673 1_4:+7528779 Msa0147560:five_prime_UTR
AGGAGAAGTGTAGTGCAAAT+TGG 0.283984 1_4:-7528863 None:intergenic
TTTCCAGCAGTGTTTGTATT+TGG 0.284628 1_4:+7528956 Msa0147560:CDS
GACTTTGTCGAATCGGTATA+AGG 0.297925 1_4:-7528651 None:intergenic
ACGACTCGGATTATGTGTTT+TGG 0.299162 1_4:+7531763 Msa0147560:CDS
TTACTATCAGTTGAAGAATT+AGG 0.313281 1_4:+7529216 Msa0147560:intron
AAAAGAACCATATATAGTTT+TGG 0.313899 1_4:-7528830 None:intergenic
ACCGGTGTTAACTTTGCTTC+CGG 0.332637 1_4:+7529297 Msa0147560:CDS
GGAGATTCAATCATGGATAC+TGG 0.365221 1_4:+7528977 Msa0147560:CDS
GTATTAACCAAAACTATATA+TGG 0.370053 1_4:+7528823 Msa0147560:exon
CCTTGAAAATCTTTGCCATA+TGG 0.389112 1_4:-7529043 None:intergenic
CAGCCTAGTGAATTGGTTAC+CGG 0.390395 1_4:+7529279 Msa0147560:CDS
CAAGAGAGCGGGAAAACAAA+AGG 0.392521 1_4:-7528475 None:intergenic
TTACAATGATATCAAGTATA+GGG 0.396353 1_4:-7530620 None:intergenic
AAATATTCAGCCTAGTGAAT+TGG 0.399972 1_4:+7529272 Msa0147560:CDS
AATCATTAACAAGTGCTGTA+AGG 0.401117 1_4:+7528598 Msa0147560:five_prime_UTR
AACTTTGCTTCCGGTGGTGC+AGG 0.405817 1_4:+7529306 Msa0147560:CDS
ACATCATAGAACAGTACATT+TGG 0.426878 1_4:-7532003 None:intergenic
GGAGAAGTGTAGTGCAAATT+GGG 0.431916 1_4:-7528862 None:intergenic
GTATTCAATGTACCACCAAT+TGG 0.435799 1_4:+7530435 Msa0147560:CDS
ATATAAACAATCCTGCTACT+TGG 0.437775 1_4:-7530585 None:intergenic
GACCGAGGGTGTTGTGGCAC+AGG 0.447165 1_4:+7531690 Msa0147560:CDS
AAGGTTCCAGCAGATCTTAT+AGG 0.461354 1_4:+7529097 Msa0147560:CDS
TTTCAAGGAGGAATTCCAAC+TGG 0.466996 1_4:+7529058 Msa0147560:CDS
ATATGTTGACTTTGTCGAAT+CGG 0.468443 1_4:-7528658 None:intergenic
TTCTTTGAATAATTCTATCT+GGG 0.473576 1_4:-7529592 None:intergenic
AGGAAAATCGAATTACTAGT+TGG 0.477769 1_4:+7528701 Msa0147560:five_prime_UTR
GTTACAATGATATCAAGTAT+AGG 0.478444 1_4:-7530621 None:intergenic
ATCCGAGTCGTTGGCACAAG+TGG 0.479341 1_4:-7531751 None:intergenic
TGAAACGGTACGCACCCAAT+TGG 0.481254 1_4:-7530450 None:intergenic
ACTGCTGGAAACGAAGCATT+TGG 0.481683 1_4:-7528944 None:intergenic
CAGTGCAAATTCCCTCCATA+TGG 0.481728 1_4:+7529028 Msa0147560:CDS
CGCCTGTGCCACAACACCCT+CGG 0.483829 1_4:-7531692 None:intergenic
ATCATAATCATTGCACTACT+AGG 0.486171 1_4:+7528681 Msa0147560:five_prime_UTR
AGTACATTTGGATGAAATCA+AGG 0.486385 1_4:-7531991 None:intergenic
AATTTGCACTGAGTTGTTGT+TGG 0.488355 1_4:-7529016 None:intergenic
ATACTGGAAATAACAACAAC+AGG 0.490434 1_4:+7528993 Msa0147560:CDS
ATAGTACCTATAAGATCTGC+TGG 0.491106 1_4:-7529103 None:intergenic
AATGTATTTCTGTAGACTTA+CGG 0.497231 1_4:-7531829 None:intergenic
CCCGCGACTGTTCTCTGAAA+CGG 0.497888 1_4:-7530465 None:intergenic
TATTCAATGTACCACCAATT+GGG 0.499652 1_4:+7530436 Msa0147560:CDS
TGTATTTGGAGATTCAATCA+TGG 0.510260 1_4:+7528970 Msa0147560:CDS
TCTCCAAATACAAACACTGC+TGG 0.510616 1_4:-7528959 None:intergenic
CAACTAGGTGCAAGGAGGAT+AGG 0.513503 1_4:+7530411 Msa0147560:intron
ATCATTAACAAGTGCTGTAA+GGG 0.517086 1_4:+7528599 Msa0147560:five_prime_UTR
ATATTTGGATCCAAATATGC+TGG 0.522693 1_4:-7529255 None:intergenic
CTCAAATCCAAGCAAGAGAG+CGG 0.522954 1_4:-7528487 None:intergenic
TGGCACAAGTGGGTTCCAAA+TGG 0.524285 1_4:-7531740 None:intergenic
AACGGTACGCACCCAATTGG+TGG 0.534120 1_4:-7530447 None:intergenic
CCATTGCTAAATCTTCCAGT+TGG 0.534561 1_4:-7529073 None:intergenic
AAGAGAGCGGGAAAACAAAA+GGG 0.538470 1_4:-7528474 None:intergenic
TGAAAATCTTTGCCATATGG+AGG 0.540087 1_4:-7529040 None:intergenic
ACCCACTTGTGCCAACGACT+CGG 0.554324 1_4:+7531749 Msa0147560:CDS
GAATATATTGTGAAGCTGAA+AGG 0.555476 1_4:+7529612 Msa0147560:CDS
AGGATCATATCCTGCACCAC+CGG 0.561279 1_4:-7529316 None:intergenic
TGGAAGATTTAGCAATGGAA+AGG 0.566706 1_4:+7529078 Msa0147560:CDS
GAAAATCTTTGCCATATGGA+GGG 0.573041 1_4:-7529039 None:intergenic
ACTTGGAAAATTCTGCTCAA+AGG 0.574536 1_4:-7530568 None:intergenic
TTTGGTTAATACTGGAAACA+AGG 0.585427 1_4:-7528812 None:intergenic
TCAAATCCAAGCAAGAGAGC+GGG 0.587226 1_4:-7528486 None:intergenic
GTGAAGCTGAAAGGACTAGT+TGG 0.592305 1_4:+7529621 Msa0147560:CDS
AAATGTATCAACTAGGTGCA+AGG 0.593045 1_4:+7530403 Msa0147560:intron
GCTGGAAACGAAGCATTTGG+TGG 0.598602 1_4:-7528941 None:intergenic
TGTCGAATCGGTATAAGGTG+TGG 0.602412 1_4:-7528646 None:intergenic
GTTGTAGACCGAGGGTGTTG+TGG 0.603304 1_4:+7531684 Msa0147560:CDS
AAACACATAATCCGAGTCGT+TGG 0.610398 1_4:-7531760 None:intergenic
GGTGTTAACTTTGCTTCCGG+TGG 0.610616 1_4:+7529300 Msa0147560:CDS
TCCGAGTCGTTGGCACAAGT+GGG 0.615115 1_4:-7531750 None:intergenic
GGCTTCAAAGTTGTAGACCG+AGG 0.619507 1_4:+7531675 Msa0147560:intron
CCAACTGGAAGATTTAGCAA+TGG 0.628801 1_4:+7529073 Msa0147560:CDS
ACCGTTTCAGAGAACAGTCG+CGG 0.634784 1_4:+7530464 Msa0147560:CDS
GCTTCAAAGTTGTAGACCGA+GGG 0.636914 1_4:+7531676 Msa0147560:CDS
ACACCGGTAACCAATTCACT+AGG 0.656294 1_4:-7529282 None:intergenic
TTTCAGAGAACAGTCGCGGG+AGG 0.668815 1_4:+7530468 Msa0147560:CDS
ATAGAAACATGAGCTTACCT+CGG 0.672707 1_4:-7528570 None:intergenic
CCGTTTCAGAGAACAGTCGC+GGG 0.673202 1_4:+7530465 Msa0147560:CDS
ACCGGAAGCAAAGTTAACAC+CGG 0.679800 1_4:-7529298 None:intergenic
ATGCAATGTTCTAAGAACCG+AGG 0.684247 1_4:+7528553 Msa0147560:five_prime_UTR
TGTATCAACTAGGTGCAAGG+AGG 0.714837 1_4:+7530406 Msa0147560:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAACATAGTAAAAATT+TGG - chr1_4:7530938-7530957 None:intergenic 10.0%
!!! TAAAAGAAATTTTTGATAAA+TGG - chr1_4:7531561-7531580 None:intergenic 10.0%
!!! ATTTTATTACTATCATCAAT+TGG - chr1_4:7529405-7529424 None:intergenic 15.0%
!! TGAAATCAAAAATATTTACA+AGG - chr1_4:7529844-7529863 None:intergenic 15.0%
!!! ATTTAGAATTACCATATTTT+TGG - chr1_4:7530650-7530669 None:intergenic 15.0%
!!! TAACAAAACATATGTATTTT+TGG + chr1_4:7530993-7531012 Msa0147560:intron 15.0%
!! GTACTTTATATTTATGTTAA+AGG + chr1_4:7531064-7531083 Msa0147560:intron 15.0%
!! TTTATATTTATGTTAAAGGT+TGG + chr1_4:7531068-7531087 Msa0147560:intron 15.0%
!!! AATTGTGTTTCTTTTATTAT+TGG + chr1_4:7531308-7531327 Msa0147560:intron 15.0%
!!! CTTTTCATAGTATTTTATAT+TGG + chr1_4:7531533-7531552 Msa0147560:intron 15.0%
!! ATGATTCAAGATTTAATATT+TGG + chr1_4:7531627-7531646 Msa0147560:intron 15.0%
!!! TATATAGTTTTGGTTAATAC+TGG - chr1_4:7528823-7528842 None:intergenic 20.0%
!! GTATTAACCAAAACTATATA+TGG + chr1_4:7528823-7528842 Msa0147560:exon 20.0%
!!! AAAAGAACCATATATAGTTT+TGG - chr1_4:7528833-7528852 None:intergenic 20.0%
!! TTCTTTGAATAATTCTATCT+GGG - chr1_4:7529595-7529614 None:intergenic 20.0%
!! ATTCTTTGAATAATTCTATC+TGG - chr1_4:7529596-7529615 None:intergenic 20.0%
!! TAGCACAAAATAAATACTAT+TGG - chr1_4:7529673-7529692 None:intergenic 20.0%
!!! TTTTAATTCCAAATGTTTTC+CGG - chr1_4:7530238-7530257 None:intergenic 20.0%
!! TTACAATGATATCAAGTATA+GGG - chr1_4:7530623-7530642 None:intergenic 20.0%
!! TTAATAAAGTGTAGAAAAAG+TGG - chr1_4:7530694-7530713 None:intergenic 20.0%
!! GTTTATCACATTTAAAAATG+TGG - chr1_4:7530864-7530883 None:intergenic 20.0%
!!! TTTTAATAACAATTACTCTC+CGG + chr1_4:7530951-7530970 Msa0147560:intron 20.0%
!!! AGATACATGTACTTTTTATT+TGG - chr1_4:7531020-7531039 None:intergenic 20.0%
!!! ATTTGCAACATAATTTTTTC+AGG - chr1_4:7531139-7531158 None:intergenic 20.0%
!!! CTTAATTCACTTTTTTTTTG+TGG + chr1_4:7531172-7531191 Msa0147560:intron 20.0%
!! TAATTCACTAGTAATACTTA+AGG + chr1_4:7531272-7531291 Msa0147560:intron 20.0%
!! AAAAATTATTGTCAACTTGT+AGG + chr1_4:7531654-7531673 Msa0147560:intron 20.0%
!!! TATTTTTTTATGCAACCATT+TGG + chr1_4:7531725-7531744 Msa0147560:CDS 20.0%
!! AGTACTAAATTGAAAAACAA+GGG - chr1_4:7532036-7532055 None:intergenic 20.0%
!! CTAAAAGTATAGTCAAAAAG+AGG - chr1_4:7528886-7528905 None:intergenic 25.0%
!!! TTTTGTTATGTGTAACAGAA+TGG - chr1_4:7529130-7529149 None:intergenic 25.0%
! TTACTATCAGTTGAAGAATT+AGG + chr1_4:7529216-7529235 Msa0147560:intron 25.0%
!! CTCTTTTACTCATTTCAATT+AGG - chr1_4:7529466-7529485 None:intergenic 25.0%
! CTAGAAAGAAAGAAACAAAA+AGG + chr1_4:7529486-7529505 Msa0147560:intron 25.0%
! TGTTTCCTTATATAATAAGC+AGG + chr1_4:7529551-7529570 Msa0147560:intron 25.0%
!!! AGTATTTATTTTGTGCTAGT+AGG + chr1_4:7529675-7529694 Msa0147560:intron 25.0%
! TAAAAAATTTCAGCAAGCTT+TGG + chr1_4:7529877-7529896 Msa0147560:intron 25.0%
!! TCATGACGGAAAATAATTAA+CGG - chr1_4:7529904-7529923 None:intergenic 25.0%
! AGATAAATCAAAAGTCATGA+CGG - chr1_4:7529918-7529937 None:intergenic 25.0%
! TGCGAAGTATAAAATCTTAA+CGG + chr1_4:7530295-7530314 Msa0147560:intron 25.0%
! TCCTTCTATTTACAAATGAA+AGG + chr1_4:7530380-7530399 Msa0147560:intron 25.0%
! TCCTTTCATTTGTAAATAGA+AGG - chr1_4:7530384-7530403 None:intergenic 25.0%
! GTTACAATGATATCAAGTAT+AGG - chr1_4:7530624-7530643 None:intergenic 25.0%
! ATTGTAACCTACCAAAAATA+TGG + chr1_4:7530636-7530655 Msa0147560:CDS 25.0%
!!! AGAATTACCATATTTTTGGT+AGG - chr1_4:7530646-7530665 None:intergenic 25.0%
! TCAATTCATGTTGAAAATTG+TGG + chr1_4:7530758-7530777 Msa0147560:intron 25.0%
!! CACTCTAACATTTGTTAATT+AGG + chr1_4:7531105-7531124 Msa0147560:intron 25.0%
!!! AATTCACTTTTTTTTTGTGG+TGG + chr1_4:7531175-7531194 Msa0147560:intron 25.0%
! TGTATAAAATATGCAAAGTC+CGG - chr1_4:7531215-7531234 None:intergenic 25.0%
! AATCTCGTATATGTAAAAGT+TGG - chr1_4:7531454-7531473 None:intergenic 25.0%
!! TCACTTAATTTGAGAAACTT+AGG + chr1_4:7531473-7531492 Msa0147560:intron 25.0%
! TAAGTGCTAGAGAATATATA+TGG + chr1_4:7531502-7531521 Msa0147560:intron 25.0%
!! AATGTATTTCTGTAGACTTA+CGG - chr1_4:7531832-7531851 None:intergenic 25.0%
! GAGTACTAAATTGAAAAACA+AGG - chr1_4:7532037-7532056 None:intergenic 25.0%
! AATCATTAACAAGTGCTGTA+AGG + chr1_4:7528598-7528617 Msa0147560:five_prime_UTR 30.0%
! ATCATTAACAAGTGCTGTAA+GGG + chr1_4:7528599-7528618 Msa0147560:five_prime_UTR 30.0%
!! ATATGTTGACTTTGTCGAAT+CGG - chr1_4:7528661-7528680 None:intergenic 30.0%
ATCATAATCATTGCACTACT+AGG + chr1_4:7528681-7528700 Msa0147560:five_prime_UTR 30.0%
AGGAAAATCGAATTACTAGT+TGG + chr1_4:7528701-7528720 Msa0147560:five_prime_UTR 30.0%
CTGCAATGTTTAGCATAAAT+AGG + chr1_4:7528779-7528798 Msa0147560:five_prime_UTR 30.0%
TTTGGTTAATACTGGAAACA+AGG - chr1_4:7528815-7528834 None:intergenic 30.0%
TGTATTTGGAGATTCAATCA+TGG + chr1_4:7528970-7528989 Msa0147560:CDS 30.0%
ATACTGGAAATAACAACAAC+AGG + chr1_4:7528993-7529012 Msa0147560:CDS 30.0%
AGAATATCTTCCAGCATATT+TGG + chr1_4:7529245-7529264 Msa0147560:CDS 30.0%
ATATTTGGATCCAAATATGC+TGG - chr1_4:7529258-7529277 None:intergenic 30.0%
AATTCACTAGGCTGAATATT+TGG - chr1_4:7529273-7529292 None:intergenic 30.0%
AAATATTCAGCCTAGTGAAT+TGG + chr1_4:7529272-7529291 Msa0147560:CDS 30.0%
TCCTTTGACATCAAAAATAG+AGG + chr1_4:7529335-7529354 Msa0147560:CDS 30.0%
!!! ACCTCTATTTTTGATGTCAA+AGG - chr1_4:7529339-7529358 None:intergenic 30.0%
!! TTAGAGATTGATTTGATCGA+TGG - chr1_4:7529382-7529401 None:intergenic 30.0%
GAATATATTGTGAAGCTGAA+AGG + chr1_4:7529612-7529631 Msa0147560:CDS 30.0%
TATAAGCTGAGTCTACTAAA+AGG - chr1_4:7529776-7529795 None:intergenic 30.0%
CTCAGCTTATAATTTCTACA+AGG + chr1_4:7529785-7529804 Msa0147560:intron 30.0%
!!! GGTAGTTTTATTATTCCACA+CGG + chr1_4:7529806-7529825 Msa0147560:intron 30.0%
!!! GTAGTTTTATTATTCCACAC+GGG + chr1_4:7529807-7529826 Msa0147560:intron 30.0%
!!! AGCTTGCTGAAATTTTTTAG+AGG - chr1_4:7529876-7529895 None:intergenic 30.0%
! CATGACGGAAAATAATTAAC+GGG - chr1_4:7529903-7529922 None:intergenic 30.0%
GCGAAGTATAAAATCTTAAC+GGG + chr1_4:7530296-7530315 Msa0147560:intron 30.0%
TGAAAGGAAATGTATCAACT+AGG + chr1_4:7530396-7530415 Msa0147560:intron 30.0%
TATTCAATGTACCACCAATT+GGG + chr1_4:7530436-7530455 Msa0147560:CDS 30.0%
ATATAAACAATCCTGCTACT+TGG - chr1_4:7530588-7530607 None:intergenic 30.0%
AAGTAGCAGGATTGTTTATA+TGG + chr1_4:7530587-7530606 Msa0147560:CDS 30.0%
ATATGGTTAATTCATCTCAG+TGG + chr1_4:7530726-7530745 Msa0147560:intron 30.0%
ATTTGTAGTTAACCACAGTT+TGG - chr1_4:7530800-7530819 None:intergenic 30.0%
TCATGCTAATGTACAAAAAG+TGG + chr1_4:7530890-7530909 Msa0147560:intron 30.0%
! GTTACTTGTTTGTTACTTGT+AGG - chr1_4:7530977-7530996 None:intergenic 30.0%
TATAAAATATGCAAAGTCCG+GGG - chr1_4:7531213-7531232 None:intergenic 30.0%
GTATAAAATATGCAAAGTCC+GGG - chr1_4:7531214-7531233 None:intergenic 30.0%
GGATAAATGAAAATCACATG+CGG + chr1_4:7531329-7531348 Msa0147560:intron 30.0%
!! TTAATTGATAGTGAGAGTTC+AGG - chr1_4:7531353-7531372 None:intergenic 30.0%
! GGCAACAAGTATTTTGTAAA+CGG - chr1_4:7531811-7531830 None:intergenic 30.0%
AGTACATTTGGATGAAATCA+AGG - chr1_4:7531994-7532013 None:intergenic 30.0%
ACATCATAGAACAGTACATT+TGG - chr1_4:7532006-7532025 None:intergenic 30.0%
ATAGAAACATGAGCTTACCT+CGG - chr1_4:7528573-7528592 None:intergenic 35.0%
TTTCCAGCAGTGTTTGTATT+TGG + chr1_4:7528956-7528975 Msa0147560:CDS 35.0%
AATTTGCACTGAGTTGTTGT+TGG - chr1_4:7529019-7529038 None:intergenic 35.0%
GAAAATCTTTGCCATATGGA+GGG - chr1_4:7529042-7529061 None:intergenic 35.0%
TGAAAATCTTTGCCATATGG+AGG - chr1_4:7529043-7529062 None:intergenic 35.0%
CCTTGAAAATCTTTGCCATA+TGG - chr1_4:7529046-7529065 None:intergenic 35.0%
! CCATATGGCAAAGATTTTCA+AGG + chr1_4:7529043-7529062 Msa0147560:CDS 35.0%
!! TATGGCAAAGATTTTCAAGG+AGG + chr1_4:7529046-7529065 Msa0147560:CDS 35.0%
TGGAAGATTTAGCAATGGAA+AGG + chr1_4:7529078-7529097 Msa0147560:CDS 35.0%
ATAGTACCTATAAGATCTGC+TGG - chr1_4:7529106-7529125 None:intergenic 35.0%
AGCTGCCTGCTTATTATATA+AGG - chr1_4:7529559-7529578 None:intergenic 35.0%
ACTAAAAGGTCAGAGTATGA+AGG - chr1_4:7529762-7529781 None:intergenic 35.0%
! ATGAGTGCACTTAAAAGCAT+GGG + chr1_4:7530200-7530219 Msa0147560:intron 35.0%
!! AACTTGCTGAAAACTCATAG+AGG + chr1_4:7530256-7530275 Msa0147560:intron 35.0%
! ACTTGCTGAAAACTCATAGA+GGG + chr1_4:7530257-7530276 Msa0147560:intron 35.0%
AAATGTATCAACTAGGTGCA+AGG + chr1_4:7530403-7530422 Msa0147560:intron 35.0%
GTATTCAATGTACCACCAAT+TGG + chr1_4:7530435-7530454 Msa0147560:CDS 35.0%
ACTTGGAAAATTCTGCTCAA+AGG - chr1_4:7530571-7530590 None:intergenic 35.0%
GAGTTCAGGAATAAACGTAA+GGG - chr1_4:7531393-7531412 None:intergenic 35.0%
AGAGTTCAGGAATAAACGTA+AGG - chr1_4:7531394-7531413 None:intergenic 35.0%
CACTATCAATTAAGAAGCTC+TGG + chr1_4:7531414-7531433 Msa0147560:intron 35.0%
TGTAAAAGTTGGAATGAACC+CGG - chr1_4:7531443-7531462 None:intergenic 35.0%
! ATTTTGTAAACGGCTTCAGT+AGG - chr1_4:7531801-7531820 None:intergenic 35.0%
AAGAGAGCGGGAAAACAAAA+GGG - chr1_4:7528477-7528496 None:intergenic 40.0%
!! ATGCAATGTTCTAAGAACCG+AGG + chr1_4:7528553-7528572 Msa0147560:five_prime_UTR 40.0%
GACTTTGTCGAATCGGTATA+AGG - chr1_4:7528654-7528673 None:intergenic 40.0%
! GGAGAAGTGTAGTGCAAATT+GGG - chr1_4:7528865-7528884 None:intergenic 40.0%
! AGGAGAAGTGTAGTGCAAAT+TGG - chr1_4:7528866-7528885 None:intergenic 40.0%
TCTCCAAATACAAACACTGC+TGG - chr1_4:7528962-7528981 None:intergenic 40.0%
GGAGATTCAATCATGGATAC+TGG + chr1_4:7528977-7528996 Msa0147560:CDS 40.0%
TTTCAAGGAGGAATTCCAAC+TGG + chr1_4:7529058-7529077 Msa0147560:CDS 40.0%
CCATTGCTAAATCTTCCAGT+TGG - chr1_4:7529076-7529095 None:intergenic 40.0%
CCAACTGGAAGATTTAGCAA+TGG + chr1_4:7529073-7529092 Msa0147560:CDS 40.0%
AAGGTTCCAGCAGATCTTAT+AGG + chr1_4:7529097-7529116 Msa0147560:CDS 40.0%
AGGATCAAATTAAACCCGTG+TGG - chr1_4:7529824-7529843 None:intergenic 40.0%
CATGAGTGCACTTAAAAGCA+TGG + chr1_4:7530199-7530218 Msa0147560:intron 40.0%
! AGCAGAATTTTCCAAGTAGC+AGG + chr1_4:7530574-7530593 Msa0147560:CDS 40.0%
TCATCTGCAAAACCAAACTG+TGG + chr1_4:7530785-7530804 Msa0147560:intron 40.0%
! CTTGTTTGTTACTTGTAGGC+CGG - chr1_4:7530973-7530992 None:intergenic 40.0%
!!! CACTTTTTTTTTGTGGTGGC+CGG + chr1_4:7531179-7531198 Msa0147560:intron 40.0%
!!! ACTTTTTTTTTGTGGTGGCC+GGG + chr1_4:7531180-7531199 Msa0147560:intron 40.0%
! AATTAAGAAGCTCTGGTTGC+CGG + chr1_4:7531421-7531440 Msa0147560:intron 40.0%
AAACACATAATCCGAGTCGT+TGG - chr1_4:7531763-7531782 None:intergenic 40.0%
!! ACGACTCGGATTATGTGTTT+TGG + chr1_4:7531763-7531782 Msa0147560:CDS 40.0%
!! CGACTCGGATTATGTGTTTT+GGG + chr1_4:7531764-7531783 Msa0147560:CDS 40.0%
CAAGAGAGCGGGAAAACAAA+AGG - chr1_4:7528478-7528497 None:intergenic 45.0%
TCAAATCCAAGCAAGAGAGC+GGG - chr1_4:7528489-7528508 None:intergenic 45.0%
CTCAAATCCAAGCAAGAGAG+CGG - chr1_4:7528490-7528509 None:intergenic 45.0%
TGTCGAATCGGTATAAGGTG+TGG - chr1_4:7528649-7528668 None:intergenic 45.0%
! ACTGCTGGAAACGAAGCATT+TGG - chr1_4:7528947-7528966 None:intergenic 45.0%
CAGTGCAAATTCCCTCCATA+TGG + chr1_4:7529028-7529047 Msa0147560:CDS 45.0%
CAGCCTAGTGAATTGGTTAC+CGG + chr1_4:7529279-7529298 Msa0147560:CDS 45.0%
ACACCGGTAACCAATTCACT+AGG - chr1_4:7529285-7529304 None:intergenic 45.0%
! ACCGGTGTTAACTTTGCTTC+CGG + chr1_4:7529297-7529316 Msa0147560:CDS 45.0%
ACCGGAAGCAAAGTTAACAC+CGG - chr1_4:7529301-7529320 None:intergenic 45.0%
! GTGAAGCTGAAAGGACTAGT+TGG + chr1_4:7529621-7529640 Msa0147560:CDS 45.0%
AAGTCGTGCCGGAAAACATT+TGG + chr1_4:7530227-7530246 Msa0147560:intron 45.0%
TGTATCAACTAGGTGCAAGG+AGG + chr1_4:7530406-7530425 Msa0147560:intron 45.0%
!!! CTTTTTTTTTGTGGTGGCCG+GGG + chr1_4:7531181-7531200 Msa0147560:intron 45.0%
! ATTAAGAAGCTCTGGTTGCC+GGG + chr1_4:7531422-7531441 Msa0147560:intron 45.0%
GCTTCAAAGTTGTAGACCGA+GGG + chr1_4:7531676-7531695 Msa0147560:CDS 45.0%
!!! ATTAATCATTTTTAAAAATA+TGG + chr1_4:7530709-7530728 Msa0147560:intron 5.0%
! TGTTTTCCCGCTCTCTTGCT+TGG + chr1_4:7528480-7528499 Msa0147560:five_prime_UTR 50.0%
! GCTGGAAACGAAGCATTTGG+TGG - chr1_4:7528944-7528963 None:intergenic 50.0%
GGTGTTAACTTTGCTTCCGG+TGG + chr1_4:7529300-7529319 Msa0147560:CDS 50.0%
AGGATCATATCCTGCACCAC+CGG - chr1_4:7529319-7529338 None:intergenic 50.0%
CAACTAGGTGCAAGGAGGAT+AGG + chr1_4:7530411-7530430 Msa0147560:intron 50.0%
TGAAACGGTACGCACCCAAT+TGG - chr1_4:7530453-7530472 None:intergenic 50.0%
ACCGTTTCAGAGAACAGTCG+CGG + chr1_4:7530464-7530483 Msa0147560:CDS 50.0%
! TGAGCATAGCTCGGTTGGTA+AGG - chr1_4:7531242-7531261 None:intergenic 50.0%
GGCTTCAAAGTTGTAGACCG+AGG + chr1_4:7531675-7531694 Msa0147560:intron 50.0%
! TGGCACAAGTGGGTTCCAAA+TGG - chr1_4:7531743-7531762 None:intergenic 50.0%
AACTTTGCTTCCGGTGGTGC+AGG + chr1_4:7529306-7529325 Msa0147560:CDS 55.0%
GCATGGGAGAAAAGTCGTGC+CGG + chr1_4:7530216-7530235 Msa0147560:intron 55.0%
AACGGTACGCACCCAATTGG+TGG - chr1_4:7530450-7530469 None:intergenic 55.0%
! CCCGCGACTGTTCTCTGAAA+CGG - chr1_4:7530468-7530487 None:intergenic 55.0%
CCGTTTCAGAGAACAGTCGC+GGG + chr1_4:7530465-7530484 Msa0147560:CDS 55.0%
TTTCAGAGAACAGTCGCGGG+AGG + chr1_4:7530468-7530487 Msa0147560:CDS 55.0%
AAAGTCCGGGGTTCAAACCC+CGG - chr1_4:7531201-7531220 None:intergenic 55.0%
GTGTGCTCGTGAGCATAGCT+CGG - chr1_4:7531251-7531270 None:intergenic 55.0%
!! GTTGTAGACCGAGGGTGTTG+TGG + chr1_4:7531684-7531703 Msa0147560:CDS 55.0%
ACCCACTTGTGCCAACGACT+CGG + chr1_4:7531749-7531768 Msa0147560:CDS 55.0%
TCCGAGTCGTTGGCACAAGT+GGG - chr1_4:7531753-7531772 None:intergenic 55.0%
ATCCGAGTCGTTGGCACAAG+TGG - chr1_4:7531754-7531773 None:intergenic 55.0%
GCTCGTGAGCATAGCTCGGT+TGG - chr1_4:7531247-7531266 None:intergenic 60.0%
!! GACCGAGGGTGTTGTGGCAC+AGG + chr1_4:7531690-7531709 Msa0147560:CDS 65.0%
CGCCTGTGCCACAACACCCT+CGG - chr1_4:7531695-7531714 None:intergenic 65.0%
GGTGGCCGGGGTTTGAACCC+CGG + chr1_4:7531193-7531212 Msa0147560:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 7528445 7532060 7528445 ID=Msa0147560;Name=Msa0147560
chr1_4 mRNA 7528445 7532060 7528445 ID=Msa0147560-mRNA-1;Parent=Msa0147560;Name=Msa0147560-mRNA-1;_AED=0.24;_eAED=0.24;_QI=397|0.75|0.6|1|0.75|0.6|5|194|313
chr1_4 exon 7528445 7529118 7528445 ID=Msa0147560-mRNA-1:exon:3281;Parent=Msa0147560-mRNA-1
chr1_4 exon 7529226 7529356 7529226 ID=Msa0147560-mRNA-1:exon:3282;Parent=Msa0147560-mRNA-1
chr1_4 exon 7529573 7529675 7529573 ID=Msa0147560-mRNA-1:exon:3283;Parent=Msa0147560-mRNA-1
chr1_4 exon 7530418 7530657 7530418 ID=Msa0147560-mRNA-1:exon:3284;Parent=Msa0147560-mRNA-1
chr1_4 exon 7531676 7532060 7531676 ID=Msa0147560-mRNA-1:exon:3285;Parent=Msa0147560-mRNA-1
chr1_4 five_prime_UTR 7528445 7528841 7528445 ID=Msa0147560-mRNA-1:five_prime_utr;Parent=Msa0147560-mRNA-1
chr1_4 CDS 7528842 7529118 7528842 ID=Msa0147560-mRNA-1:cds;Parent=Msa0147560-mRNA-1
chr1_4 CDS 7529226 7529356 7529226 ID=Msa0147560-mRNA-1:cds;Parent=Msa0147560-mRNA-1
chr1_4 CDS 7529573 7529675 7529573 ID=Msa0147560-mRNA-1:cds;Parent=Msa0147560-mRNA-1
chr1_4 CDS 7530418 7530657 7530418 ID=Msa0147560-mRNA-1:cds;Parent=Msa0147560-mRNA-1
chr1_4 CDS 7531676 7531866 7531676 ID=Msa0147560-mRNA-1:cds;Parent=Msa0147560-mRNA-1
chr1_4 three_prime_UTR 7531867 7532060 7531867 ID=Msa0147560-mRNA-1:three_prime_utr;Parent=Msa0147560-mRNA-1
Gene Sequence

>Msa0147560

ATGGTTCTTTTAATGAAGTTCCCAATTTGCACTACACTTCTCCTCTTTTTGACTATACTTTTAGCTATTTTAAGCAAAACAAAAGCTATTTTGAAACTGCCACCAAATGCTTCGTTTCCAGCAGTGTTTGTATTTGGAGATTCAATCATGGATACTGGAAATAACAACAACAGGCCAACAACAACTCAGTGCAAATTCCCTCCATATGGCAAAGATTTTCAAGGAGGAATTCCAACTGGAAGATTTAGCAATGGAAAGGTTCCAGCAGATCTTATAGTTGAAGAATTAGGCATTAAAGAATATCTTCCAGCATATTTGGATCCAAATATTCAGCCTAGTGAATTGGTTACCGGTGTTAACTTTGCTTCCGGTGGTGCAGGATATGATCCTTTGACATCAAAAATAGAGGCAGCTATATCTATGTCTGCCCAGATAGAATTATTCAAAGAATATATTGTGAAGCTGAAAGGACTAGTTGGTGAAGATAGAGCAAACTTCATCTTAGCCAATAGTGCAAGGAGGATAGGAGTATTCAATGTACCACCAATTGGGTGCGTACCGTTTCAGAGAACAGTCGCGGGAGGAATAACAAGAAAATGTGTGCAACATTACAATGATGCAGTTGTTTTCTTTAACAAAAAGTTGTCAATGAAAATTGATACCTTTGAGCAGAATTTTCCAAGTAGCAGGATTGTTTATATGGATGTTTACAACCCTATACTTGATATCATTGTAACCTACCAAAAATATGGCTTCAAAGTTGTAGACCGAGGGTGTTGTGGCACAGGCGAAATCGAAGTTATTTTTTTATGCAACCATTTGGAACCCACTTGTGCCAACGACTCGGATTATGTGTTTTGGGATGCTTTTCATCCTACTGAAGCCGTTTACAAAATACTTGTTGCCGTAAGTCTACAGAAATACATTTACAACTTTATTTAG

Protein sequence

>Msa0147560

MVLLMKFPICTTLLLFLTILLAILSKTKAILKLPPNASFPAVFVFGDSIMDTGNNNNRPTTTQCKFPPYGKDFQGGIPTGRFSNGKVPADLIVEELGIKEYLPAYLDPNIQPSELVTGVNFASGGAGYDPLTSKIEAAISMSAQIELFKEYIVKLKGLVGEDRANFILANSARRIGVFNVPPIGCVPFQRTVAGGITRKCVQHYNDAVVFFNKKLSMKIDTFEQNFPSSRIVYMDVYNPILDIIVTYQKYGFKVVDRGCCGTGEIEVIFLCNHLEPTCANDSDYVFWDAFHPTEAVYKILVAVSLQKYIYNFI*