Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0203580 | XP_004488117.1 | 78.333 | 240 | 19 | 2 | 1 | 209 | 14 | 251 | 2.79e-128 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0203580 | A0A1S2XHG7 | 78.333 | 240 | 19 | 2 | 1 | 209 | 14 | 251 | 1.33e-128 | 372 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0203580 | Msa0285450 | 0.811203 | 7.872857e-51 | -8.615850e-47 |
| Msa0203580 | Msa0430420 | 0.806596 | 7.616513e-50 | -8.615850e-47 |
| Msa0203580 | Msa0886330 | -0.821783 | 3.360327e-53 | -8.615850e-47 |
| Msa0203580 | Msa1030970 | 0.803066 | 4.162720e-49 | -8.615850e-47 |
| Msa0203580 | Msa1075220 | -0.802980 | 4.336425e-49 | -8.615850e-47 |
| Msa0203580 | Msa1090260 | 0.816265 | 6.046744e-52 | -8.615850e-47 |
| Msa0203580 | Msa1162550 | -0.815890 | 7.331257e-52 | -8.615850e-47 |
| Msa0203580 | Msa1205130 | 0.809455 | 1.876172e-50 | -8.615850e-47 |
| Msa0203580 | Msa1244250 | 0.810842 | 9.427361e-51 | -8.615850e-47 |
| Msa0203580 | Msa1390050 | 0.813495 | 2.487336e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0203580 | MtrunA17_Chr2g0301291 | 78.776 | 245 | 16 | 3 | 1 | 209 | 5 | 249 | 9.20e-124 | 350 |
| Msa0203580 | MtrunA17_Chr7g0246971 | 39.665 | 179 | 107 | 1 | 2 | 179 | 17 | 195 | 2.36e-44 | 149 |
| Msa0203580 | MtrunA17_Chr1g0169801 | 37.576 | 165 | 82 | 3 | 2 | 163 | 17 | 163 | 1.94e-33 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 61 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAAATGCTATTGTTTATA+AGG | 0.183643 | 2_1:+27543149 | Msa0203580:CDS |
| CAAATATGAAAAGAGCTTTA+TGG | 0.207904 | 2_1:-27542787 | None:intergenic |
| TTGATATTAGCTTGGGGAAT+TGG | 0.256716 | 2_1:+27543048 | Msa0203580:CDS |
| TACCTTAGAGAAGGGTTTAT+TGG | 0.262362 | 2_1:+27542918 | Msa0203580:CDS |
| TGCACTATAGTTTGGTTTCA+TGG | 0.266098 | 2_1:+27546506 | Msa0203580:three_prime_UTR |
| TAAGAGAATATACACCAAAA+AGG | 0.279883 | 2_1:-27545027 | None:intergenic |
| TTCCAATAAACCCTTCTCTA+AGG | 0.300083 | 2_1:-27542920 | None:intergenic |
| CCGGTACCATTTCCTTGTTT+TGG | 0.303365 | 2_1:+27544418 | Msa0203580:CDS |
| TCTCATTTCTCATGTTTGAT+AGG | 0.309735 | 2_1:-27545258 | None:intergenic |
| ATGCTCTTGCTCTTGCTTGT+TGG | 0.312054 | 2_1:-27542848 | None:intergenic |
| CTGCTAGTTGCACTATAGTT+TGG | 0.319207 | 2_1:+27546498 | Msa0203580:three_prime_UTR |
| AACCATTATATCTATATTAG+AGG | 0.319742 | 2_1:+27546180 | Msa0203580:three_prime_UTR |
| AGCATTTGTTGGAGGATAAC+AGG | 0.339446 | 2_1:+27546379 | Msa0203580:three_prime_UTR |
| TGATATTAGCTTGGGGAATT+GGG | 0.340131 | 2_1:+27543049 | Msa0203580:CDS |
| TGCAGCATCGTTTCAAGAAA+TGG | 0.345990 | 2_1:+27542972 | Msa0203580:CDS |
| TGCTTTATGTACCAGTTAGA+AGG | 0.346663 | 2_1:+27543082 | Msa0203580:CDS |
| AAACAATAGCATTTGGAGTA+AGG | 0.358216 | 2_1:-27543143 | None:intergenic |
| TTCCTCTAATATAGATATAA+TGG | 0.360241 | 2_1:-27546182 | None:intergenic |
| CTAAGTATAAACCTTCTAAC+TGG | 0.364571 | 2_1:-27543093 | None:intergenic |
| AGAAGATGGTTCGCATTTGA+TGG | 0.375797 | 2_1:+27545306 | Msa0203580:CDS |
| CTCTGTTATTGATATTAGCT+TGG | 0.381718 | 2_1:+27543040 | Msa0203580:CDS |
| TCTGTTATTGATATTAGCTT+GGG | 0.384025 | 2_1:+27543041 | Msa0203580:CDS |
| ACCTTATAAACAATAGCATT+TGG | 0.387126 | 2_1:-27543150 | None:intergenic |
| AAATATGAAAAGAGCTTTAT+GGG | 0.388609 | 2_1:-27542786 | None:intergenic |
| ATAGTAGCACTAATATTTGT+TGG | 0.396316 | 2_1:-27546212 | None:intergenic |
| CGGTGACGATGTTAAAATCT+TGG | 0.404644 | 2_1:+27545081 | Msa0203580:CDS |
| GTTTATCAACTTGCATCTCC+AGG | 0.420619 | 2_1:-27546253 | None:intergenic |
| TCTCTTAGAATTGAAAATGT+TGG | 0.435318 | 2_1:+27545043 | Msa0203580:CDS |
| TACTTCATTGGCAGCAACCC+TGG | 0.445035 | 2_1:+27546235 | Msa0203580:three_prime_UTR |
| AATACCTTCTTGAAAGCGTT+AGG | 0.448098 | 2_1:-27545115 | None:intergenic |
| TAGTGCTACTATTACTTCAT+TGG | 0.452255 | 2_1:+27546223 | Msa0203580:three_prime_UTR |
| TCTATAGTTTCCGTTGTTTG+AGG | 0.460843 | 2_1:-27545998 | None:intergenic |
| ATGCAGTATTGAGCATTTGT+TGG | 0.468774 | 2_1:+27546368 | Msa0203580:three_prime_UTR |
| CAAACTAACAATGAATTGCT+AGG | 0.480900 | 2_1:-27546288 | None:intergenic |
| AAAGTACCCACTGTACTGTT+TGG | 0.489475 | 2_1:-27543014 | None:intergenic |
| GGTGACGATGTTAAAATCTT+GGG | 0.496437 | 2_1:+27545082 | Msa0203580:CDS |
| TTGTGGAGAGTGGTGGAATA+TGG | 0.498402 | 2_1:+27546150 | Msa0203580:intron |
| CAGTATTGAGCATTTGTTGG+AGG | 0.503877 | 2_1:+27546371 | Msa0203580:three_prime_UTR |
| GCATTCTGTGGCTGATGTTG+TGG | 0.504415 | 2_1:+27544471 | Msa0203580:CDS |
| TTGAAAATGTTGGAGTTCGA+AGG | 0.510875 | 2_1:+27545053 | Msa0203580:CDS |
| AGCACTCCAAAACAAGGAAA+TGG | 0.514191 | 2_1:-27544424 | None:intergenic |
| AAATGAGATTGTTTCAAGCC+AGG | 0.521206 | 2_1:+27545273 | Msa0203580:CDS |
| AAATCCTAACGCTTTCAAGA+AGG | 0.543903 | 2_1:+27545111 | Msa0203580:CDS |
| GGAAATAGATACCTTAGAGA+AGG | 0.551779 | 2_1:+27542909 | Msa0203580:CDS |
| GAAATAGATACCTTAGAGAA+GGG | 0.553643 | 2_1:+27542910 | Msa0203580:CDS |
| CTGTTATTGATATTAGCTTG+GGG | 0.569273 | 2_1:+27543042 | Msa0203580:CDS |
| CAGGTGTCTACATTAGAAGA+TGG | 0.573728 | 2_1:+27545292 | Msa0203580:CDS |
| TTTATCAACTTGCATCTCCA+GGG | 0.575361 | 2_1:-27546252 | None:intergenic |
| CAAGTACCAAACAGTACAGT+GGG | 0.576403 | 2_1:+27543008 | Msa0203580:CDS |
| AACAACAATGGATGAAGTAG+TGG | 0.577356 | 2_1:+27542888 | Msa0203580:exon |
| AACAATTAAGAAAACAACAA+TGG | 0.579169 | 2_1:+27542876 | Msa0203580:exon |
| TCTAGCTCAGGTCACAAGAC+CGG | 0.586630 | 2_1:+27544399 | Msa0203580:intron |
| GCTGATGTTGTGGTTGAACA+AGG | 0.587426 | 2_1:+27544481 | Msa0203580:CDS |
| GTTGGAGTTCGAAGGCCACC+CGG | 0.590743 | 2_1:+27545061 | Msa0203580:CDS |
| ACAACGGAAACTATAGATTG+AGG | 0.592401 | 2_1:+27546004 | Msa0203580:CDS |
| TAGGTCCTTGTGGAGAGTGG+TGG | 0.598816 | 2_1:+27546143 | Msa0203580:intron |
| TTATGCAGCACTCCAAAACA+AGG | 0.599010 | 2_1:-27544430 | None:intergenic |
| CCAAAACAAGGAAATGGTAC+CGG | 0.607295 | 2_1:-27544418 | None:intergenic |
| CATCTTCTAATGTAGACACC+TGG | 0.610261 | 2_1:-27545291 | None:intergenic |
| GAAGCAACAACCTCAAACAA+CGG | 0.639168 | 2_1:+27545988 | Msa0203580:CDS |
| TCAAGTACCAAACAGTACAG+TGG | 0.671926 | 2_1:+27543007 | Msa0203580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATACATTAATATAAG+AGG | + | chr2_1:27543305-27543324 | Msa0203580:intron | 10.0% |
| !! | TATAATAATTTATCAAGAAA+CGG | - | chr2_1:27543401-27543420 | None:intergenic | 10.0% |
| !!! | TAAGAAAACAAATTATTTTA+TGG | + | chr2_1:27546345-27546364 | Msa0203580:three_prime_UTR | 10.0% |
| !! | TATAAATTGAAACAAATAGT+AGG | - | chr2_1:27543193-27543212 | None:intergenic | 15.0% |
| !!! | TTCAATTTATATTTTACTGT+TGG | + | chr2_1:27543202-27543221 | Msa0203580:intron | 15.0% |
| !!! | TCAATTTATATTTTACTGTT+GGG | + | chr2_1:27543203-27543222 | Msa0203580:intron | 15.0% |
| !!! | TACAATTAGTATCTTTTTTT+AGG | - | chr2_1:27543537-27543556 | None:intergenic | 15.0% |
| !! | TATACTAATATAGTAACATT+TGG | + | chr2_1:27543975-27543994 | Msa0203580:intron | 15.0% |
| !!! | AATTTTCAGTAATAATATAC+TGG | - | chr2_1:27544019-27544038 | None:intergenic | 15.0% |
| !! | AGTATATTATTACTGAAAAT+TGG | + | chr2_1:27544018-27544037 | Msa0203580:intron | 15.0% |
| !! | GTATATTATTACTGAAAATT+GGG | + | chr2_1:27544019-27544038 | Msa0203580:intron | 15.0% |
| !! | TAATTATATATAATTACACG+AGG | - | chr2_1:27544628-27544647 | None:intergenic | 15.0% |
| !! | CGTGTAATTATATATAATTA+TGG | + | chr2_1:27544628-27544647 | Msa0203580:intron | 15.0% |
| !!! | TTTTGAAAATAGAAAAGAAA+AGG | + | chr2_1:27545754-27545773 | Msa0203580:intron | 15.0% |
| !!! | TGTTATTAGATATTTTCATT+TGG | + | chr2_1:27545915-27545934 | Msa0203580:intron | 15.0% |
| !!! | TTTACACCTATATTTTTTTA+GGG | - | chr2_1:27546417-27546436 | None:intergenic | 15.0% |
| !!! | ATTTACACCTATATTTTTTT+AGG | - | chr2_1:27546418-27546437 | None:intergenic | 15.0% |
| !!! | AAATATGAAAAGAGCTTTAT+GGG | - | chr2_1:27542789-27542808 | None:intergenic | 20.0% |
| !! | AACAATTAAGAAAACAACAA+TGG | + | chr2_1:27542876-27542895 | Msa0203580:exon | 20.0% |
| !!! | ATAAACTATGAATTTGTTGT+TGG | + | chr2_1:27543450-27543469 | Msa0203580:intron | 20.0% |
| !!! | AGAAAGTACATCAATATATA+GGG | + | chr2_1:27543562-27543581 | Msa0203580:intron | 20.0% |
| !!! | CTATATTAGTATATTTTACC+AGG | - | chr2_1:27543968-27543987 | None:intergenic | 20.0% |
| !!! | TAAAAGTTTTAATGCCATTT+GGG | - | chr2_1:27544154-27544173 | None:intergenic | 20.0% |
| !!! | TTAAAAGTTTTAATGCCATT+TGG | - | chr2_1:27544155-27544174 | None:intergenic | 20.0% |
| !!! | AAATGGCATTAAAACTTTTA+AGG | + | chr2_1:27544154-27544173 | Msa0203580:intron | 20.0% |
| !!! | AATGGCATTAAAACTTTTAA+GGG | + | chr2_1:27544155-27544174 | Msa0203580:intron | 20.0% |
| !!! | AGAAATCATGGTTTTAAATT+GGG | - | chr2_1:27544896-27544915 | None:intergenic | 20.0% |
| !!! | AAGAAATCATGGTTTTAAAT+TGG | - | chr2_1:27544897-27544916 | None:intergenic | 20.0% |
| !! | AAGAAAATCACAATTTGATA+AGG | - | chr2_1:27545149-27545168 | None:intergenic | 20.0% |
| !! | AGTAAAAGAGACAAATATAT+GGG | - | chr2_1:27545369-27545388 | None:intergenic | 20.0% |
| !! | AAGTAAAAGAGACAAATATA+TGG | - | chr2_1:27545370-27545389 | None:intergenic | 20.0% |
| !!! | TTAGTTTCATAAAACGTTTT+GGG | - | chr2_1:27545809-27545828 | None:intergenic | 20.0% |
| !!! | TTTAGTTTCATAAAACGTTT+TGG | - | chr2_1:27545810-27545829 | None:intergenic | 20.0% |
| !! | ATAAAAAAAAACGAAGTTCT+AGG | + | chr2_1:27545861-27545880 | Msa0203580:intron | 20.0% |
| !! | AATAACAGAAATATAGAACT+AGG | - | chr2_1:27545902-27545921 | None:intergenic | 20.0% |
| !! | AATACAGCTTGATTAAAAAA+TGG | - | chr2_1:27546090-27546109 | None:intergenic | 20.0% |
| !! | AACCATTATATCTATATTAG+AGG | + | chr2_1:27546180-27546199 | Msa0203580:three_prime_UTR | 20.0% |
| !! | TTCCTCTAATATAGATATAA+TGG | - | chr2_1:27546185-27546204 | None:intergenic | 20.0% |
| !! | TTAAAACAAACAAAAATGCA+AGG | - | chr2_1:27546328-27546347 | None:intergenic | 20.0% |
| ! | CAAATATGAAAAGAGCTTTA+TGG | - | chr2_1:27542790-27542809 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTTGAAATTCGTT+TGG | + | chr2_1:27542819-27542838 | Msa0203580:five_prime_UTR | 25.0% |
| !! | TCTGTTATTGATATTAGCTT+GGG | + | chr2_1:27543041-27543060 | Msa0203580:CDS | 25.0% |
| ! | TCCAAATGCTATTGTTTATA+AGG | + | chr2_1:27543149-27543168 | Msa0203580:CDS | 25.0% |
| ! | ACCTTATAAACAATAGCATT+TGG | - | chr2_1:27543153-27543172 | None:intergenic | 25.0% |
| ! | ATAATTTATCAAGAAACGGA+AGG | - | chr2_1:27543397-27543416 | None:intergenic | 25.0% |
| !! | CAGAAAGTACATCAATATAT+AGG | + | chr2_1:27543561-27543580 | Msa0203580:intron | 25.0% |
| ! | AAAAACACAACATCCTTAAA+GGG | - | chr2_1:27543874-27543893 | None:intergenic | 25.0% |
| ! | TTCAGTAATAATATACTGGT+TGG | - | chr2_1:27544015-27544034 | None:intergenic | 25.0% |
| ! | TGTCATTCTTTGTAATCAAA+GGG | - | chr2_1:27544051-27544070 | None:intergenic | 25.0% |
| !!! | ATAAAAGGCAGTTACTTTTT+GGG | - | chr2_1:27544257-27544276 | None:intergenic | 25.0% |
| ! | AGTGAATGATGTATCATAAA+AGG | - | chr2_1:27544272-27544291 | None:intergenic | 25.0% |
| !! | ATTCACTTTAGACATGATTT+TGG | + | chr2_1:27544285-27544304 | Msa0203580:intron | 25.0% |
| !! | TTCACTTTAGACATGATTTT+GGG | + | chr2_1:27544286-27544305 | Msa0203580:intron | 25.0% |
| ! | ATGTATGATATTTGCATGTA+TGG | + | chr2_1:27544345-27544364 | Msa0203580:intron | 25.0% |
| ! | TAGCACTTGAAAACAAAATA+GGG | - | chr2_1:27544553-27544572 | None:intergenic | 25.0% |
| ! | TAGTTTCATGTTTGAAGATT+TGG | + | chr2_1:27544571-27544590 | Msa0203580:intron | 25.0% |
| ! | TTCTAGCATTGTTAAAATTG+CGG | + | chr2_1:27544728-27544747 | Msa0203580:intron | 25.0% |
| ! | AATCAATATCCTTTCTATTG+TGG | + | chr2_1:27544850-27544869 | Msa0203580:intron | 25.0% |
| !!! | GAAATCATGGTTTTAAATTG+GGG | - | chr2_1:27544895-27544914 | None:intergenic | 25.0% |
| ! | TAATGAGATACAAGAAATCA+TGG | - | chr2_1:27544908-27544927 | None:intergenic | 25.0% |
| ! | ATTAATTGTACCTGTTCATA+GGG | + | chr2_1:27544924-27544943 | Msa0203580:intron | 25.0% |
| ! | TAGAAATTAAGCCACAAAAA+CGG | - | chr2_1:27544966-27544985 | None:intergenic | 25.0% |
| ! | ATTAATGATATCTGCTCATA+GGG | + | chr2_1:27544993-27545012 | Msa0203580:intron | 25.0% |
| ! | AAGAGAATATACACCAAAAA+GGG | - | chr2_1:27545029-27545048 | None:intergenic | 25.0% |
| ! | TAAGAGAATATACACCAAAA+AGG | - | chr2_1:27545030-27545049 | None:intergenic | 25.0% |
| ! | TCTCTTAGAATTGAAAATGT+TGG | + | chr2_1:27545043-27545062 | Msa0203580:CDS | 25.0% |
| !! | AACGACTTTAATTATTGACT+TGG | - | chr2_1:27545393-27545412 | None:intergenic | 25.0% |
| ! | ACAATGACAAAAAACAATGT+GGG | - | chr2_1:27545506-27545525 | None:intergenic | 25.0% |
| ! | TACAATGACAAAAAACAATG+TGG | - | chr2_1:27545507-27545526 | None:intergenic | 25.0% |
| ! | ATAGTAGCACTAATATTTGT+TGG | - | chr2_1:27546215-27546234 | None:intergenic | 25.0% |
| ! | CATCATCCCTAAAAAAATAT+AGG | + | chr2_1:27546408-27546427 | Msa0203580:intron | 25.0% |
| !!! | TGTAAATCATTGTTGTTTTC+TGG | + | chr2_1:27546431-27546450 | Msa0203580:three_prime_UTR | 25.0% |
| ! | CTGAAAAAGTAATTCTATGA+TGG | - | chr2_1:27546467-27546486 | None:intergenic | 25.0% |
| !!! | CATCATAGAATTACTTTTTC+AGG | + | chr2_1:27546465-27546484 | Msa0203580:three_prime_UTR | 25.0% |
| GAAATAGATACCTTAGAGAA+GGG | + | chr2_1:27542910-27542929 | Msa0203580:CDS | 30.0% | |
| CTCTGTTATTGATATTAGCT+TGG | + | chr2_1:27543040-27543059 | Msa0203580:CDS | 30.0% | |
| ! | CTGTTATTGATATTAGCTTG+GGG | + | chr2_1:27543042-27543061 | Msa0203580:CDS | 30.0% |
| CTAAGTATAAACCTTCTAAC+TGG | - | chr2_1:27543096-27543115 | None:intergenic | 30.0% | |
| ! | AAACAATAGCATTTGGAGTA+AGG | - | chr2_1:27543146-27543165 | None:intergenic | 30.0% |
| AAACAAATAGTAGGAAAGTG+AGG | - | chr2_1:27543184-27543203 | None:intergenic | 30.0% | |
| TTTACTGTTGGGAATACTAT+TGG | + | chr2_1:27543214-27543233 | Msa0203580:intron | 30.0% | |
| !!! | GAGGATTTGTTTTGTATCAT+AGG | + | chr2_1:27543324-27543343 | Msa0203580:intron | 30.0% |
| ! | GAATGAGTTGAGAAGTTAAA+AGG | + | chr2_1:27543497-27543516 | Msa0203580:intron | 30.0% |
| !!! | TAGTTCTAGTTTAGCAGTTT+TGG | + | chr2_1:27543658-27543677 | Msa0203580:intron | 30.0% |
| ! | AACCTCTTTTCCTATTGTTA+AGG | + | chr2_1:27543731-27543750 | Msa0203580:intron | 30.0% |
| ! | ACCTCTTTTCCTATTGTTAA+GGG | + | chr2_1:27543732-27543751 | Msa0203580:intron | 30.0% |
| CAAAAACACAACATCCTTAA+AGG | - | chr2_1:27543875-27543894 | None:intergenic | 30.0% | |
| ! | TATTTTACCAGGATTTGAAC+AGG | - | chr2_1:27543957-27543976 | None:intergenic | 30.0% |
| GTCATTCTTTGTAATCAAAG+GGG | - | chr2_1:27544050-27544069 | None:intergenic | 30.0% | |
| CTGTCATTCTTTGTAATCAA+AGG | - | chr2_1:27544052-27544071 | None:intergenic | 30.0% | |
| !!! | CATAAAAGGCAGTTACTTTT+TGG | - | chr2_1:27544258-27544277 | None:intergenic | 30.0% |
| ! | TTCTGTGTTCTTTAAGCTTT+TGG | + | chr2_1:27544523-27544542 | Msa0203580:intron | 30.0% |
| CTAGCACTTGAAAACAAAAT+AGG | - | chr2_1:27544554-27544573 | None:intergenic | 30.0% | |
| TATATATAATTACACGAGGC+TGG | - | chr2_1:27544624-27544643 | None:intergenic | 30.0% | |
| TATATATAATTATGGCCCTC+TGG | + | chr2_1:27544636-27544655 | Msa0203580:intron | 30.0% | |
| TACTACGAATTAAAACCAGA+GGG | - | chr2_1:27544654-27544673 | None:intergenic | 30.0% | |
| ATACTACGAATTAAAACCAG+AGG | - | chr2_1:27544655-27544674 | None:intergenic | 30.0% | |
| ! | TATGCTACTTGCAATAGTTA+TGG | + | chr2_1:27544696-27544715 | Msa0203580:intron | 30.0% |
| ! | ATGCTACTTGCAATAGTTAT+GGG | + | chr2_1:27544697-27544716 | Msa0203580:intron | 30.0% |
| ! | TTTCATTTTCCTACATCTTG+CGG | - | chr2_1:27544789-27544808 | None:intergenic | 30.0% |
| CATTAATTGTACCTGTTCAT+AGG | + | chr2_1:27544923-27544942 | Msa0203580:intron | 30.0% | |
| GATTAATGATATCTGCTCAT+AGG | + | chr2_1:27544992-27545011 | Msa0203580:intron | 30.0% | |
| CAAAAGTGAGAGAAGAAATA+CGG | - | chr2_1:27545173-27545192 | None:intergenic | 30.0% | |
| !! | TTCTCTCACTTTTGAATTGA+TGG | + | chr2_1:27545179-27545198 | Msa0203580:intron | 30.0% |
| !!! | AAACTTCTTTTTTCTTTGCC+TGG | + | chr2_1:27545210-27545229 | Msa0203580:intron | 30.0% |
| TCTCATTTCTCATGTTTGAT+AGG | - | chr2_1:27545261-27545280 | None:intergenic | 30.0% | |
| GGAAAAAACTGAATACTTCT+CGG | - | chr2_1:27545348-27545367 | None:intergenic | 30.0% | |
| AGAATCATATCTCAATGACT+TGG | - | chr2_1:27545541-27545560 | None:intergenic | 30.0% | |
| AAAAACATTGCAGCAAAAGT+AGG | - | chr2_1:27546063-27546082 | None:intergenic | 30.0% | |
| TTACATCCGTCCTTAAATAT+AGG | + | chr2_1:27546124-27546143 | Msa0203580:intron | 30.0% | |
| ! | TAGTGCTACTATTACTTCAT+TGG | + | chr2_1:27546223-27546242 | Msa0203580:three_prime_UTR | 30.0% |
| CAAACTAACAATGAATTGCT+AGG | - | chr2_1:27546291-27546310 | None:intergenic | 30.0% | |
| !!! | AAATCATTGTTGTTTTCTGG+AGG | + | chr2_1:27546434-27546453 | Msa0203580:three_prime_UTR | 30.0% |
| !!! | CATAGAATTACTTTTTCAGG+TGG | + | chr2_1:27546468-27546487 | Msa0203580:three_prime_UTR | 30.0% |
| AACAACAATGGATGAAGTAG+TGG | + | chr2_1:27542888-27542907 | Msa0203580:exon | 35.0% | |
| GGAAATAGATACCTTAGAGA+AGG | + | chr2_1:27542909-27542928 | Msa0203580:CDS | 35.0% | |
| TACCTTAGAGAAGGGTTTAT+TGG | + | chr2_1:27542918-27542937 | Msa0203580:CDS | 35.0% | |
| TTCCAATAAACCCTTCTCTA+AGG | - | chr2_1:27542923-27542942 | None:intergenic | 35.0% | |
| ! | TTGATATTAGCTTGGGGAAT+TGG | + | chr2_1:27543048-27543067 | Msa0203580:CDS | 35.0% |
| ! | TGATATTAGCTTGGGGAATT+GGG | + | chr2_1:27543049-27543068 | Msa0203580:CDS | 35.0% |
| TGCTTTATGTACCAGTTAGA+AGG | + | chr2_1:27543082-27543101 | Msa0203580:CDS | 35.0% | |
| GTATCATAGGTCTATTGAAG+AGG | + | chr2_1:27543337-27543356 | Msa0203580:intron | 35.0% | |
| ATAGGTCTATTGAAGAGGAT+TGG | + | chr2_1:27543342-27543361 | Msa0203580:intron | 35.0% | |
| GAGTTGTGAGTTTGAACTTT+GGG | + | chr2_1:27543472-27543491 | Msa0203580:intron | 35.0% | |
| !!! | AGTTTAGCAGTTTTGGACAT+AGG | + | chr2_1:27543665-27543684 | Msa0203580:intron | 35.0% |
| TCCCTTAACAATAGGAAAAG+AGG | - | chr2_1:27543736-27543755 | None:intergenic | 35.0% | |
| AAAAAGGCTCCCTTAACAAT+AGG | - | chr2_1:27543744-27543763 | None:intergenic | 35.0% | |
| ACAAGAGATACCCAAGAAAA+AGG | - | chr2_1:27543760-27543779 | None:intergenic | 35.0% | |
| ! | CTTGTGTTTGTTACATGAGT+TGG | + | chr2_1:27543775-27543794 | Msa0203580:intron | 35.0% |
| !! | TGTTTTTGATTGTTGAGAGC+TGG | + | chr2_1:27543887-27543906 | Msa0203580:intron | 35.0% |
| !! | GTTTTTGATTGTTGAGAGCT+GGG | + | chr2_1:27543888-27543907 | Msa0203580:intron | 35.0% |
| !! | TTTTTGATTGTTGAGAGCTG+GGG | + | chr2_1:27543889-27543908 | Msa0203580:intron | 35.0% |
| ! | GAATGAGTTGAGAAGTTAGA+AGG | + | chr2_1:27543928-27543947 | Msa0203580:intron | 35.0% |
| AAAGAATGACAGCACTTCAA+GGG | + | chr2_1:27544060-27544079 | Msa0203580:intron | 35.0% | |
| !!! | TTGGGAGTTTTGATTAGAGA+GGG | - | chr2_1:27544136-27544155 | None:intergenic | 35.0% |
| !!! | TTTGGGAGTTTTGATTAGAG+AGG | - | chr2_1:27544137-27544156 | None:intergenic | 35.0% |
| CTCTAATCAAAACTCCCAAA+TGG | + | chr2_1:27544137-27544156 | Msa0203580:intron | 35.0% | |
| ! | ACTTTAGACATGATTTTGGG+TGG | + | chr2_1:27544289-27544308 | Msa0203580:intron | 35.0% |
| !! | GGATCTCTTGACTTGTAATA+AGG | + | chr2_1:27544366-27544385 | Msa0203580:intron | 35.0% |
| !! | GCATGTTTTATTGCATTCTG+TGG | + | chr2_1:27544459-27544478 | Msa0203580:CDS | 35.0% |
| AGGCTGGAAGAATAAAAGTA+AGG | - | chr2_1:27544608-27544627 | None:intergenic | 35.0% | |
| ! | TGCTACTTGCAATAGTTATG+GGG | + | chr2_1:27544698-27544717 | Msa0203580:intron | 35.0% |
| GTAGGAAAATGAAATCCTTG+CGG | + | chr2_1:27544795-27544814 | Msa0203580:intron | 35.0% | |
| GGTCTAAATTGTGGTTTCAA+TGG | + | chr2_1:27544816-27544835 | Msa0203580:intron | 35.0% | |
| TTTCTATTGTGGCTGCAATT+GGG | + | chr2_1:27544861-27544880 | Msa0203580:intron | 35.0% | |
| TTGAAAATGTTGGAGTTCGA+AGG | + | chr2_1:27545053-27545072 | Msa0203580:CDS | 35.0% | |
| !! | AAGATTTTAACATCGTCACC+GGG | - | chr2_1:27545082-27545101 | None:intergenic | 35.0% |
| !! | CAAGATTTTAACATCGTCAC+CGG | - | chr2_1:27545083-27545102 | None:intergenic | 35.0% |
| GGTGACGATGTTAAAATCTT+GGG | + | chr2_1:27545082-27545101 | Msa0203580:CDS | 35.0% | |
| AAATCCTAACGCTTTCAAGA+AGG | + | chr2_1:27545111-27545130 | Msa0203580:CDS | 35.0% | |
| !! | AATACCTTCTTGAAAGCGTT+AGG | - | chr2_1:27545118-27545137 | None:intergenic | 35.0% |
| ! | TCTTTGCCTGGTTTCTTTTT+AGG | + | chr2_1:27545222-27545241 | Msa0203580:intron | 35.0% |
| TAACAGCCTAAAAAGAAACC+AGG | - | chr2_1:27545231-27545250 | None:intergenic | 35.0% | |
| AAATGAGATTGTTTCAAGCC+AGG | + | chr2_1:27545273-27545292 | Msa0203580:CDS | 35.0% | |
| AAACTGAATACTTCTCGGAT+TGG | - | chr2_1:27545343-27545362 | None:intergenic | 35.0% | |
| GTAACTGCTATTGTTCATGT+TGG | + | chr2_1:27545456-27545475 | Msa0203580:intron | 35.0% | |
| ! | TCATATCTCAATGACTTGGA+TGG | - | chr2_1:27545537-27545556 | None:intergenic | 35.0% |
| ATATGATTCTACTCATTCCG+AGG | + | chr2_1:27545551-27545570 | Msa0203580:intron | 35.0% | |
| AGTAAACGCTGCATATACAT+AGG | + | chr2_1:27545627-27545646 | Msa0203580:intron | 35.0% | |
| !! | AAACGAAGTTCTAGGAGTAA+AGG | + | chr2_1:27545869-27545888 | Msa0203580:intron | 35.0% |
| ! | TTTTCATTTGGCTAAGCATC+AGG | + | chr2_1:27545927-27545946 | Msa0203580:intron | 35.0% |
| TCTATAGTTTCCGTTGTTTG+AGG | - | chr2_1:27546001-27546020 | None:intergenic | 35.0% | |
| ACAACGGAAACTATAGATTG+AGG | + | chr2_1:27546004-27546023 | Msa0203580:CDS | 35.0% | |
| CAAGGACCTATATTTAAGGA+CGG | - | chr2_1:27546133-27546152 | None:intergenic | 35.0% | |
| TCCTTAAATATAGGTCCTTG+TGG | + | chr2_1:27546133-27546152 | Msa0203580:intron | 35.0% | |
| TCCACAAGGACCTATATTTA+AGG | - | chr2_1:27546137-27546156 | None:intergenic | 35.0% | |
| TTTATCAACTTGCATCTCCA+GGG | - | chr2_1:27546255-27546274 | None:intergenic | 35.0% | |
| ! | ATGCAGTATTGAGCATTTGT+TGG | + | chr2_1:27546368-27546387 | Msa0203580:three_prime_UTR | 35.0% |
| ! | TGCACTATAGTTTGGTTTCA+TGG | + | chr2_1:27546506-27546525 | Msa0203580:three_prime_UTR | 35.0% |
| TGCAGCATCGTTTCAAGAAA+TGG | + | chr2_1:27542972-27542991 | Msa0203580:CDS | 40.0% | |
| TCAAGTACCAAACAGTACAG+TGG | + | chr2_1:27543007-27543026 | Msa0203580:CDS | 40.0% | |
| CAAGTACCAAACAGTACAGT+GGG | + | chr2_1:27543008-27543027 | Msa0203580:CDS | 40.0% | |
| ! | AAAGTACCCACTGTACTGTT+TGG | - | chr2_1:27543017-27543036 | None:intergenic | 40.0% |
| !!! | TTGAAGAGGATTGGTTTTGC+CGG | + | chr2_1:27543351-27543370 | Msa0203580:intron | 40.0% |
| ATCAAGAAACGGAAGGCAAA+CGG | - | chr2_1:27543390-27543409 | None:intergenic | 40.0% | |
| GGAGTTGTGAGTTTGAACTT+TGG | + | chr2_1:27543471-27543490 | Msa0203580:intron | 40.0% | |
| ! | TGTTAAGGGAGCCTTTTTCT+TGG | + | chr2_1:27543746-27543765 | Msa0203580:intron | 40.0% |
| ! | GTTAAGGGAGCCTTTTTCTT+GGG | + | chr2_1:27543747-27543766 | Msa0203580:intron | 40.0% |
| ! | ATATTTCTATCCGACAGCTG+AGG | + | chr2_1:27543836-27543855 | Msa0203580:intron | 40.0% |
| ! | TATTTCTATCCGACAGCTGA+GGG | + | chr2_1:27543837-27543856 | Msa0203580:intron | 40.0% |
| !! | TTTTGATTGTTGAGAGCTGG+GGG | + | chr2_1:27543890-27543909 | Msa0203580:intron | 40.0% |
| CAAAGAATGACAGCACTTCA+AGG | + | chr2_1:27544059-27544078 | Msa0203580:intron | 40.0% | |
| AGGAATAGAGCCTTTGTCAT+CGG | - | chr2_1:27544094-27544113 | None:intergenic | 40.0% | |
| ! | AGGGCAACATCTTGTCATTT+GGG | - | chr2_1:27544117-27544136 | None:intergenic | 40.0% |
| !!! | TTACTTTTTGGGTATGGACC+AGG | - | chr2_1:27544246-27544265 | None:intergenic | 40.0% |
| !!! | AGGCAGTTACTTTTTGGGTA+TGG | - | chr2_1:27544252-27544271 | None:intergenic | 40.0% |
| CCAAAACAAGGAAATGGTAC+CGG | - | chr2_1:27544421-27544440 | None:intergenic | 40.0% | |
| AGCACTCCAAAACAAGGAAA+TGG | - | chr2_1:27544427-27544446 | None:intergenic | 40.0% | |
| TTATGCAGCACTCCAAAACA+AGG | - | chr2_1:27544433-27544452 | None:intergenic | 40.0% | |
| CATTGTTAAAATTGCGGCTG+TGG | + | chr2_1:27544734-27544753 | Msa0203580:intron | 40.0% | |
| TTTACATTGCCGCAAGATGT+AGG | + | chr2_1:27544777-27544796 | Msa0203580:intron | 40.0% | |
| AATCCTTGCGGTCTAAATTG+TGG | + | chr2_1:27544807-27544826 | Msa0203580:intron | 40.0% | |
| AAACCACAATTTAGACCGCA+AGG | - | chr2_1:27544813-27544832 | None:intergenic | 40.0% | |
| CAATTGCAGCCACAATAGAA+AGG | - | chr2_1:27544862-27544881 | None:intergenic | 40.0% | |
| CTTTCTATTGTGGCTGCAAT+TGG | + | chr2_1:27544860-27544879 | Msa0203580:intron | 40.0% | |
| TTCTATTGTGGCTGCAATTG+GGG | + | chr2_1:27544862-27544881 | Msa0203580:intron | 40.0% | |
| CGGTGACGATGTTAAAATCT+TGG | + | chr2_1:27545081-27545100 | Msa0203580:CDS | 40.0% | |
| CATCTTCTAATGTAGACACC+TGG | - | chr2_1:27545294-27545313 | None:intergenic | 40.0% | |
| CAGGTGTCTACATTAGAAGA+TGG | + | chr2_1:27545292-27545311 | Msa0203580:CDS | 40.0% | |
| AGAAGATGGTTCGCATTTGA+TGG | + | chr2_1:27545306-27545325 | Msa0203580:CDS | 40.0% | |
| TAATCAACACCCTCAACTTG+AGG | - | chr2_1:27545431-27545450 | None:intergenic | 40.0% | |
| GAAGCAACAACCTCAAACAA+CGG | + | chr2_1:27545988-27546007 | Msa0203580:CDS | 40.0% | |
| GTTTATCAACTTGCATCTCC+AGG | - | chr2_1:27546256-27546275 | None:intergenic | 40.0% | |
| ! | CAGTATTGAGCATTTGTTGG+AGG | + | chr2_1:27546371-27546390 | Msa0203580:three_prime_UTR | 40.0% |
| ! | AGCATTTGTTGGAGGATAAC+AGG | + | chr2_1:27546379-27546398 | Msa0203580:three_prime_UTR | 40.0% |
| CTGCTAGTTGCACTATAGTT+TGG | + | chr2_1:27546498-27546517 | Msa0203580:three_prime_UTR | 40.0% | |
| ATGCTCTTGCTCTTGCTTGT+TGG | - | chr2_1:27542851-27542870 | None:intergenic | 45.0% | |
| TCAAGAAACGGAAGGCAAAC+GGG | - | chr2_1:27543389-27543408 | None:intergenic | 45.0% | |
| GATTTAGATGTGTGCTCGAC+AGG | + | chr2_1:27543586-27543605 | Msa0203580:intron | 45.0% | |
| TAAGATCCTCAGGGATACGT+AGG | - | chr2_1:27543622-27543641 | None:intergenic | 45.0% | |
| TACGTATCCCTGAGGATCTT+AGG | + | chr2_1:27543621-27543640 | Msa0203580:intron | 45.0% | |
| ACGTATCCCTGAGGATCTTA+GGG | + | chr2_1:27543622-27543641 | Msa0203580:intron | 45.0% | |
| CTGATTCCCTAAGATCCTCA+GGG | - | chr2_1:27543631-27543650 | None:intergenic | 45.0% | |
| TCTGATTCCCTAAGATCCTC+AGG | - | chr2_1:27543632-27543651 | None:intergenic | 45.0% | |
| TAGGTTCCACTACTTGAGTG+AGG | + | chr2_1:27543684-27543703 | Msa0203580:intron | 45.0% | |
| AGGTTCCACTACTTGAGTGA+GGG | + | chr2_1:27543685-27543704 | Msa0203580:intron | 45.0% | |
| !! | GAGGGGGGTATTTATAGAAG+TGG | + | chr2_1:27543703-27543722 | Msa0203580:intron | 45.0% |
| ! | GTTTGTTACATGAGTTGGCG+TGG | + | chr2_1:27543780-27543799 | Msa0203580:intron | 45.0% |
| AAGGTCTCCTGTTCAAATCC+TGG | + | chr2_1:27543947-27543966 | Msa0203580:intron | 45.0% | |
| GGAATAGAGCCTTTGTCATC+GGG | - | chr2_1:27544093-27544112 | None:intergenic | 45.0% | |
| ! | GCAACATCTTGTCATTTGGG+AGG | - | chr2_1:27544114-27544133 | None:intergenic | 45.0% |
| GAGGGCAACATCTTGTCATT+TGG | - | chr2_1:27544118-27544137 | None:intergenic | 45.0% | |
| !!! | AGGGAGTTTTGTTGCTCATG+TGG | + | chr2_1:27544174-27544193 | Msa0203580:intron | 45.0% |
| ! | GTTGCTCATGTGGTTCTATC+TGG | + | chr2_1:27544184-27544203 | Msa0203580:intron | 45.0% |
| !! | GGCTGTGTTTTATCTAGCTC+AGG | + | chr2_1:27544387-27544406 | Msa0203580:intron | 45.0% |
| !! | CCGGTACCATTTCCTTGTTT+TGG | + | chr2_1:27544418-27544437 | Msa0203580:CDS | 45.0% |
| GCTGATGTTGTGGTTGAACA+AGG | + | chr2_1:27544481-27544500 | Msa0203580:CDS | 45.0% | |
| TAAAATTGCGGCTGTGGTTG+CGG | + | chr2_1:27544740-27544759 | Msa0203580:intron | 45.0% | |
| TTGTGGTTTCAATGGCGTCA+TGG | + | chr2_1:27544824-27544843 | Msa0203580:intron | 45.0% | |
| TGTGCAAGTACCCTATGAAC+AGG | - | chr2_1:27544937-27544956 | None:intergenic | 45.0% | |
| !! | GCACAGTTGAACCGTTTTTG+TGG | + | chr2_1:27544952-27544971 | Msa0203580:intron | 45.0% |
| ! | GGGTACTTGCAATCCCTTTT+TGG | + | chr2_1:27545013-27545032 | Msa0203580:intron | 45.0% |
| !! | ATTTTAACATCGTCACCGGG+TGG | - | chr2_1:27545079-27545098 | None:intergenic | 45.0% |
| ACCCTCAACTTGAGGTTTCT+GGG | - | chr2_1:27545423-27545442 | None:intergenic | 45.0% | |
| CTGCAATAGTAGCAGTTCCT+CGG | - | chr2_1:27545571-27545590 | None:intergenic | 45.0% | |
| ACTGCTACTATTGCAGAAGC+TGG | + | chr2_1:27545575-27545594 | Msa0203580:intron | 45.0% | |
| ATATAGGTCCTTGTGGAGAG+TGG | + | chr2_1:27546140-27546159 | Msa0203580:intron | 45.0% | |
| ATATTCCACCACTCTCCACA+AGG | - | chr2_1:27546151-27546170 | None:intergenic | 45.0% | |
| ! | TTGTGGAGAGTGGTGGAATA+TGG | + | chr2_1:27546150-27546169 | Msa0203580:intron | 45.0% |
| GGTTCCACTACTTGAGTGAG+GGG | + | chr2_1:27543686-27543705 | Msa0203580:intron | 50.0% | |
| GTTCCACTACTTGAGTGAGG+GGG | + | chr2_1:27543687-27543706 | Msa0203580:intron | 50.0% | |
| TTCCACTACTTGAGTGAGGG+GGG | + | chr2_1:27543688-27543707 | Msa0203580:intron | 50.0% | |
| GGTCGTTCCTATCCGATAGA+TGG | + | chr2_1:27543801-27543820 | Msa0203580:intron | 50.0% | |
| CGTTCCTATCCGATAGATGG+TGG | + | chr2_1:27543804-27543823 | Msa0203580:intron | 50.0% | |
| ACCAACTCGCCACCATCTAT+CGG | - | chr2_1:27543816-27543835 | None:intergenic | 50.0% | |
| AGAGCTGGGGGTTTGATCTT+TGG | + | chr2_1:27543902-27543921 | Msa0203580:intron | 50.0% | |
| GTATGGACCAGGTATCTTGG+GGG | - | chr2_1:27544235-27544254 | None:intergenic | 50.0% | |
| GGTATGGACCAGGTATCTTG+GGG | - | chr2_1:27544236-27544255 | None:intergenic | 50.0% | |
| GGGTATGGACCAGGTATCTT+GGG | - | chr2_1:27544237-27544256 | None:intergenic | 50.0% | |
| TGGGTATGGACCAGGTATCT+TGG | - | chr2_1:27544238-27544257 | None:intergenic | 50.0% | |
| ! | TCTAGCTCAGGTCACAAGAC+CGG | + | chr2_1:27544399-27544418 | Msa0203580:intron | 50.0% |
| GCATTCTGTGGCTGATGTTG+TGG | + | chr2_1:27544471-27544490 | Msa0203580:CDS | 50.0% | |
| ! | ACCCCAGAAACCTCAAGTTG+AGG | + | chr2_1:27545418-27545437 | Msa0203580:intron | 50.0% |
| CCCTCAACTTGAGGTTTCTG+GGG | - | chr2_1:27545422-27545441 | None:intergenic | 50.0% | |
| !! | CCCCAGAAACCTCAAGTTGA+GGG | + | chr2_1:27545419-27545438 | Msa0203580:intron | 50.0% |
| CACCCTCAACTTGAGGTTTC+TGG | - | chr2_1:27545424-27545443 | None:intergenic | 50.0% | |
| GCTACTATTGCAGAAGCTGG+AGG | + | chr2_1:27545578-27545597 | Msa0203580:intron | 50.0% | |
| TTGCAGAAGCTGGAGGAAGT+TGG | + | chr2_1:27545585-27545604 | Msa0203580:intron | 50.0% | |
| GGAAGTTGGAAGCTCTGTCA+AGG | + | chr2_1:27545599-27545618 | Msa0203580:intron | 50.0% | |
| TACTTCATTGGCAGCAACCC+TGG | + | chr2_1:27546235-27546254 | Msa0203580:three_prime_UTR | 50.0% | |
| AAACGGGCAATAAGCTGCGC+CGG | - | chr2_1:27543373-27543392 | None:intergenic | 55.0% | |
| CTCAGGGATACGTAGGACCA+GGG | - | chr2_1:27543615-27543634 | None:intergenic | 55.0% | |
| TACCCCCCTCACTCAAGTAG+TGG | - | chr2_1:27543693-27543712 | None:intergenic | 55.0% | |
| CTCGCCACCATCTATCGGAT+AGG | - | chr2_1:27543811-27543830 | None:intergenic | 55.0% | |
| ! | TCCGATAGATGGTGGCGAGT+TGG | + | chr2_1:27543812-27543831 | Msa0203580:intron | 55.0% |
| ATAAGCTCGCCCTCAGCTGT+CGG | - | chr2_1:27543849-27543868 | None:intergenic | 55.0% | |
| GGCGAGCTTATCGCCCTTTA+AGG | + | chr2_1:27543858-27543877 | Msa0203580:intron | 55.0% | |
| GGTCTGCTTCCCGATGACAA+AGG | + | chr2_1:27544081-27544100 | Msa0203580:intron | 55.0% | |
| GTAGTTGCCCCCAAGATACC+TGG | + | chr2_1:27544225-27544244 | Msa0203580:intron | 55.0% | |
| TAGGTCCTTGTGGAGAGTGG+TGG | + | chr2_1:27546143-27546162 | Msa0203580:intron | 55.0% | |
| GTGTGCTCGACAGGTTTCCC+TGG | + | chr2_1:27543595-27543614 | Msa0203580:intron | 60.0% | |
| CCTCAGGGATACGTAGGACC+AGG | - | chr2_1:27543616-27543635 | None:intergenic | 60.0% | |
| CCTGGTCCTACGTATCCCTG+AGG | + | chr2_1:27543613-27543632 | Msa0203580:intron | 60.0% | |
| GTTGGAGTTCGAAGGCCACC+CGG | + | chr2_1:27545061-27545080 | Msa0203580:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 27542781 | 27546545 | 27542781 | ID=Msa0203580;Name=Msa0203580 |
| chr2_1 | mRNA | 27542781 | 27546545 | 27542781 | ID=Msa0203580-mRNA-1;Parent=Msa0203580;Name=Msa0203580-mRNA-1;_AED=0.21;_eAED=0.21;_QI=114|0.83|1|1|0.66|0.57|7|362|209 |
| chr2_1 | exon | 27542781 | 27543170 | 27542781 | ID=Msa0203580-mRNA-1:exon:10146;Parent=Msa0203580-mRNA-1 |
| chr2_1 | exon | 27544409 | 27544502 | 27544409 | ID=Msa0203580-mRNA-1:exon:10147;Parent=Msa0203580-mRNA-1 |
| chr2_1 | exon | 27545014 | 27545132 | 27545014 | ID=Msa0203580-mRNA-1:exon:10148;Parent=Msa0203580-mRNA-1 |
| chr2_1 | exon | 27545244 | 27545327 | 27545244 | ID=Msa0203580-mRNA-1:exon:10149;Parent=Msa0203580-mRNA-1 |
| chr2_1 | exon | 27545968 | 27546025 | 27545968 | ID=Msa0203580-mRNA-1:exon:10150;Parent=Msa0203580-mRNA-1 |
| chr2_1 | exon | 27546156 | 27546400 | 27546156 | ID=Msa0203580-mRNA-1:exon:10151;Parent=Msa0203580-mRNA-1 |
| chr2_1 | exon | 27546430 | 27546545 | 27546430 | ID=Msa0203580-mRNA-1:exon:10152;Parent=Msa0203580-mRNA-1 |
| chr2_1 | five_prime_UTR | 27542781 | 27542894 | 27542781 | ID=Msa0203580-mRNA-1:five_prime_utr;Parent=Msa0203580-mRNA-1 |
| chr2_1 | CDS | 27542895 | 27543170 | 27542895 | ID=Msa0203580-mRNA-1:cds;Parent=Msa0203580-mRNA-1 |
| chr2_1 | CDS | 27544409 | 27544502 | 27544409 | ID=Msa0203580-mRNA-1:cds;Parent=Msa0203580-mRNA-1 |
| chr2_1 | CDS | 27545014 | 27545132 | 27545014 | ID=Msa0203580-mRNA-1:cds;Parent=Msa0203580-mRNA-1 |
| chr2_1 | CDS | 27545244 | 27545327 | 27545244 | ID=Msa0203580-mRNA-1:cds;Parent=Msa0203580-mRNA-1 |
| chr2_1 | CDS | 27545968 | 27546024 | 27545968 | ID=Msa0203580-mRNA-1:cds;Parent=Msa0203580-mRNA-1 |
| chr2_1 | three_prime_UTR | 27546025 | 27546025 | 27546025 | ID=Msa0203580-mRNA-1:three_prime_utr;Parent=Msa0203580-mRNA-1 |
| chr2_1 | three_prime_UTR | 27546156 | 27546400 | 27546156 | ID=Msa0203580-mRNA-1:three_prime_utr;Parent=Msa0203580-mRNA-1 |
| chr2_1 | three_prime_UTR | 27546430 | 27546545 | 27546430 | ID=Msa0203580-mRNA-1:three_prime_utr;Parent=Msa0203580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
