AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0430420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430420 MtrunA17_Chr3g0118841 91.129 496 41 3 1 494 1 495 0.0 904
Msa0430420 MtrunA17_Chr3g0118851 89.315 496 50 3 1 494 1 495 0.0 881
Msa0430420 MtrunA17_Chr3g0118831 89.697 495 19 2 1 494 1 464 0.0 878
Msa0430420 MtrunA17_Chr3g0118881 85.487 503 62 3 1 493 1 502 0.0 853
Msa0430420 MtrunA17_Chr3g0118891 82.056 496 54 5 1 494 1 463 0.0 812
Msa0430420 MtrunA17_Chr3g0118861 81.262 507 49 6 1 494 1 474 0.0 809
Msa0430420 MtrunA17_Chr1g0153881 62.025 474 172 5 18 489 30 497 0.0 592
Msa0430420 MtrunA17_Chr1g0153941 56.504 492 187 5 27 493 27 516 0.0 549
Msa0430420 MtrunA17_Chr3g0090331 53.644 494 203 10 11 489 8 490 4.59e-177 506
Msa0430420 MtrunA17_Chr4g0020241 55.093 432 183 7 65 490 62 488 2.65e-162 469
Msa0430420 MtrunA17_Chr1g0199991 51.345 446 199 6 57 491 20 458 8.17e-158 456
Msa0430420 MtrunA17_Chr1g0199971 52.778 432 189 7 73 491 29 458 3.86e-153 444
Msa0430420 MtrunA17_Chr4g0038311 50.769 455 194 11 59 492 21 466 3.44e-151 439
Msa0430420 MtrunA17_Chr2g0309511 50.594 421 198 5 80 490 43 463 1.04e-149 436
Msa0430420 MtrunA17_Chr2g0309521 49.644 421 202 4 80 490 43 463 1.26e-149 436
Msa0430420 MtrunA17_Chr2g0309541 48.753 441 212 7 62 490 26 464 2.62e-149 435
Msa0430420 MtrunA17_Chr7g0219051 49.315 438 202 5 70 489 29 464 2.63e-145 424
Msa0430420 MtrunA17_Chr2g0318911 49.061 426 204 7 73 486 36 460 6.03e-145 424
Msa0430420 MtrunA17_Chr4g0047861 48.764 445 193 10 74 491 51 487 1.03e-140 413
Msa0430420 MtrunA17_Chr4g0068841 46.413 446 211 6 73 491 35 479 1.42e-139 410
Msa0430420 MtrunA17_Chr2g0281621 46.682 437 210 7 75 491 34 467 1.41e-134 397
Msa0430420 MtrunA17_Chr3g0126031 46.501 443 212 11 69 491 21 458 3.97e-123 368
Msa0430420 MtrunA17_Chr3g0126051 44.796 442 223 9 69 491 26 465 6.15e-120 360
Msa0430420 MtrunA17_Chr5g0431301 44.944 445 220 9 69 491 22 463 3.86e-118 355
Msa0430420 MtrunA17_Chr3g0131731 44.545 440 218 10 72 489 26 461 7.61e-118 354
Msa0430420 MtrunA17_Chr2g0281641 47.656 384 177 8 129 490 7 388 1.20e-113 341
Msa0430420 MtrunA17_Chr2g0304931 43.409 440 218 10 73 491 35 464 9.42e-113 341
Msa0430420 MtrunA17_Chr7g0221551 41.935 434 228 9 75 489 29 457 2.86e-109 332
Msa0430420 MtrunA17_Chr4g0068861 41.043 441 231 8 32 445 38 476 3.22e-109 332
Msa0430420 MtrunA17_Chr8g0385871 42.308 442 225 12 73 491 30 464 3.83e-109 332
Msa0430420 MtrunA17_Chr3g0094811 41.950 441 222 12 71 488 25 454 3.65e-107 327
Msa0430420 MtrunA17_Chr1g0153931 60.317 252 97 3 9 257 6 257 2.19e-97 295
Msa0430420 MtrunA17_Chr1g0153921 60.909 220 81 4 271 489 1 216 8.51e-87 266
Msa0430420 MtrunA17_Chr1g0204191 36.446 439 225 15 64 483 81 484 1.40e-74 243
Msa0430420 MtrunA17_Chr8g0338461 33.619 467 249 9 77 486 31 493 1.21e-72 238
Msa0430420 MtrunA17_Chr7g0249431 34.927 481 244 17 69 485 20 495 8.89e-72 236
Msa0430420 MtrunA17_Chr1g0165811 48.198 222 106 4 72 293 26 238 9.59e-70 223
Msa0430420 MtrunA17_Chr7g0234051 32.165 485 264 10 58 485 16 492 6.37e-66 221
Msa0430420 MtrunA17_Chr1g0171411 31.455 426 247 11 89 490 81 485 2.70e-57 197
Msa0430420 MtrunA17_Chr4g0028271 30.716 433 230 14 91 487 97 495 1.60e-54 190
Msa0430420 MtrunA17_Chr4g0009711 30.435 437 265 15 76 483 39 465 7.74e-54 188
Msa0430420 MtrunA17_Chr7g0234041 32.639 432 225 11 77 452 27 448 5.30e-53 186
Msa0430420 MtrunA17_Chr1g0199171 29.977 427 253 13 88 490 87 491 7.13e-53 186
Msa0430420 MtrunA17_Chr2g0327401 29.932 441 260 15 75 487 80 499 1.26e-52 186
Msa0430420 MtrunA17_Chr4g0009661 30.317 442 263 16 74 483 37 465 1.36e-51 182
Msa0430420 MtrunA17_Chr4g0009701 30.455 440 265 14 74 483 37 465 4.34e-51 180
Msa0430420 MtrunA17_Chr4g0028241 31.019 432 240 14 88 487 86 491 1.16e-50 180
Msa0430420 MtrunA17_Chr4g0028261 30.415 434 249 12 82 487 109 517 2.70e-50 179
Msa0430420 MtrunA17_Chr2g0285351 29.330 433 273 11 80 483 36 464 2.71e-50 178
Msa0430420 MtrunA17_Chr2g0285371 29.680 438 264 15 80 483 37 464 3.70e-50 178
Msa0430420 MtrunA17_Chr4g0009651 30.435 437 269 16 74 483 37 465 9.13e-50 177
Msa0430420 MtrunA17_Chr4g0009681 31.193 436 261 16 74 480 34 459 3.97e-49 175
Msa0430420 MtrunA17_Chr4g0028281 29.717 424 252 12 88 487 92 493 5.21e-49 175
Msa0430420 MtrunA17_Chr5g0447441 30.288 416 252 12 93 487 43 441 9.72e-48 171
Msa0430420 MtrunA17_Chr2g0327381 28.033 478 282 14 74 494 73 545 1.85e-47 172
Msa0430420 MtrunA17_Chr2g0327371 29.099 433 240 11 106 487 98 514 2.76e-46 168
Msa0430420 MtrunA17_Chr3g0133011 30.752 452 262 17 73 483 50 491 2.93e-46 168
Msa0430420 MtrunA17_Chr2g0285381 29.907 428 269 13 80 483 40 460 4.22e-45 164
Msa0430420 MtrunA17_Chr4g0009641 28.341 434 258 14 74 483 37 441 5.88e-44 160
Msa0430420 MtrunA17_Chr4g0009671 28.706 425 262 14 89 483 17 430 1.00e-43 160
Msa0430420 MtrunA17_Chr3g0093971 27.546 432 287 12 77 487 27 453 3.14e-42 156
Msa0430420 MtrunA17_Chr4g0044051 30.282 426 254 16 93 494 47 453 1.58e-39 149
Msa0430420 MtrunA17_Chr4g0009721 26.136 440 237 18 74 483 33 414 1.90e-32 128
Msa0430420 MtrunA17_Chr2g0279371 39.429 175 84 5 74 243 25 182 3.80e-26 105
Msa0430420 MtrunA17_Chr7g0229631 53.061 98 42 3 75 172 32 125 1.43e-25 102
Msa0430420 MtrunA17_Chr4g0027731 27.294 436 253 19 94 483 36 453 1.56e-25 108
Msa0430420 MtrunA17_Chr1g0165821 35.948 153 91 4 344 489 26 178 1.60e-25 103
Msa0430420 MtrunA17_Chr7g0229621 55.422 83 34 3 75 157 24 103 9.20e-22 90.1
Msa0430420 MtrunA17_Chr7g0229611 55.844 77 32 2 76 152 25 99 4.26e-21 88.2
Msa0430420 MtrunA17_Chr2g0320571 25.110 454 247 16 94 481 36 462 7.90e-17 82.8
Msa0430420 MtrunA17_Chr2g0281631 50.877 57 27 1 73 129 42 97 7.53e-13 65.5
Msa0430420 MtrunA17_Chr4g0068851 56.250 48 21 0 444 491 15 62 1.66e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0430420 AT3G63470.1 52.966 472 200 8 25 483 29 491 1.21e-174 501
Msa0430420 AT4G30610.1 52.283 438 190 5 72 491 28 464 6.55e-157 454
Msa0430420 AT2G24010.1 52.214 429 193 7 73 491 27 453 9.82e-154 446
Msa0430420 AT3G07990.1 52.607 422 185 8 75 483 32 451 7.84e-152 441
Msa0430420 AT2G24000.1 49.885 435 196 7 72 486 26 458 6.88e-150 436
Msa0430420 AT2G35780.1 51.408 426 188 7 72 483 25 445 8.68e-149 433
Msa0430420 AT2G24010.2 50.225 444 194 8 73 491 27 468 3.07e-148 432
Msa0430420 AT5G23210.1 47.609 460 194 8 72 492 47 498 1.85e-146 429
Msa0430420 AT2G35770.1 49.556 450 213 7 54 493 17 462 2.15e-145 425
Msa0430420 AT4G30810.1 47.619 441 216 6 68 494 27 466 7.99e-143 419
Msa0430420 AT2G24010.3 47.742 465 191 9 77 491 2 464 4.15e-142 416
Msa0430420 AT3G02110.1 47.894 451 200 6 69 491 30 473 6.02e-142 416
Msa0430420 AT1G61130.1 49.195 435 201 8 75 491 30 462 2.00e-138 407
Msa0430420 AT1G11080.2 45.934 455 216 7 66 491 38 491 3.91e-137 405
Msa0430420 AT1G11080.1 45.934 455 216 7 66 491 38 491 4.27e-137 405
Msa0430420 AT5G08260.1 46.712 441 205 10 70 483 33 470 1.84e-133 395
Msa0430420 AT3G52000.1 48.712 427 202 10 75 491 62 481 1.72e-131 390
Msa0430420 AT4G15100.1 46.292 445 210 9 73 491 41 482 3.26e-131 389
Msa0430420 AT3G17180.1 46.085 447 213 9 72 492 34 478 8.31e-131 388
Msa0430420 AT3G52020.1 44.554 505 252 15 5 492 8 501 1.80e-130 388
Msa0430420 AT2G05850.1 45.977 435 217 9 71 492 58 487 2.54e-129 385
Msa0430420 AT5G23210.3 46.973 413 172 8 72 445 47 451 1.47e-127 379
Msa0430420 AT5G23210.5 45.854 410 176 7 122 492 1 403 6.80e-122 363
Msa0430420 AT1G43780.1 44.519 447 223 11 69 492 30 474 7.03e-122 365
Msa0430420 AT3G52010.1 45.183 436 212 12 73 491 61 486 2.44e-121 364
Msa0430420 AT5G23210.2 46.020 402 171 7 130 492 8 402 1.34e-120 359
Msa0430420 AT2G12480.3 44.545 440 225 9 69 492 24 460 3.08e-119 358
Msa0430420 AT5G42240.1 43.596 445 226 9 69 491 25 466 8.63e-115 347
Msa0430420 AT2G33530.1 43.991 441 219 10 71 489 28 462 2.05e-114 346
Msa0430420 AT1G28110.1 43.478 437 221 10 73 489 28 458 8.95e-113 341
Msa0430420 AT1G28110.2 43.478 437 221 10 73 489 28 458 8.95e-113 341
Msa0430420 AT2G12480.4 43.218 435 214 9 69 492 24 436 6.33e-112 338
Msa0430420 AT5G42230.1 42.793 444 229 9 69 490 21 461 2.16e-111 338
Msa0430420 AT5G42230.2 42.793 444 229 9 69 490 21 461 2.16e-111 338
Msa0430420 AT2G12480.1 42.989 435 213 9 69 492 24 434 4.48e-111 336
Msa0430420 AT3G17180.2 44.030 402 198 8 72 448 34 433 1.17e-110 335
Msa0430420 AT2G24010.4 48.739 357 156 8 77 408 2 356 7.57e-110 330
Msa0430420 AT2G12480.2 42.922 438 210 10 69 492 24 435 2.80e-109 332
Msa0430420 AT5G23210.4 45.070 355 149 7 130 445 8 355 9.82e-102 310
Msa0430420 AT4G12910.1 35.597 486 251 10 55 486 18 495 1.53e-82 265
Msa0430420 AT3G25420.1 33.469 493 260 12 51 485 9 491 1.20e-75 246
Msa0430420 AT3G56540.1 69.512 164 48 2 68 231 71 232 1.47e-74 236
Msa0430420 AT2G24000.2 43.165 278 138 5 228 486 119 395 2.43e-71 232
Msa0430420 AT2G24000.2 59.140 93 36 2 72 163 26 117 8.67e-28 115
Msa0430420 AT4G12910.2 34.081 446 233 9 55 447 18 455 2.45e-68 226
Msa0430420 AT2G22990.1 32.251 431 255 13 74 486 20 431 3.49e-60 204
Msa0430420 AT3G10410.1 32.019 431 244 13 82 487 90 496 2.09e-58 201
Msa0430420 AT3G45010.1 30.787 432 250 12 82 487 92 500 8.47e-57 197
Msa0430420 AT2G23000.1 33.178 428 257 13 74 486 22 435 1.51e-56 194
Msa0430420 AT2G23000.2 33.178 428 257 13 74 486 22 435 1.51e-56 194
Msa0430420 AT2G22990.3 32.227 422 250 12 74 477 20 423 2.73e-56 194
Msa0430420 AT2G22990.4 32.678 407 238 12 74 462 20 408 3.88e-56 193
Msa0430420 AT5G22980.1 29.228 479 270 16 35 487 60 495 2.42e-55 193
Msa0430420 AT3G10450.1 31.702 429 258 11 74 486 26 435 1.95e-54 189
Msa0430420 AT2G22970.1 32.775 418 254 10 80 485 28 430 2.50e-53 186
Msa0430420 AT2G22990.5 30.858 431 252 14 74 486 20 422 3.55e-52 182
Msa0430420 AT2G23010.1 31.591 421 259 11 80 485 28 434 4.41e-52 182
Msa0430420 AT1G73300.1 31.163 430 259 11 74 486 30 439 5.34e-52 182
Msa0430420 AT1G73300.2 31.163 430 259 11 74 486 30 439 5.34e-52 182
Msa0430420 AT2G22920.2 32.706 425 247 13 80 485 28 432 6.46e-52 182
Msa0430420 AT3G10450.2 31.618 408 244 11 95 486 4 392 1.43e-51 180
Msa0430420 AT2G23010.2 31.354 421 260 11 80 485 28 434 1.96e-51 181
Msa0430420 AT1G73270.2 30.575 435 267 12 68 486 24 439 3.01e-51 181
Msa0430420 AT1G33540.1 31.264 451 268 13 68 485 20 461 3.41e-51 181
Msa0430420 AT1G73270.1 30.575 435 267 12 68 486 24 439 3.43e-51 181
Msa0430420 AT5G36180.1 31.395 430 258 11 74 486 30 439 1.43e-50 179
Msa0430420 AT1G73280.1 31.494 435 263 12 68 486 24 439 1.71e-50 178
Msa0430420 AT2G22970.3 33.249 397 239 9 80 464 28 410 1.06e-49 176
Msa0430420 AT2G22980.1 31.490 416 254 11 80 483 29 425 1.69e-49 176
Msa0430420 AT2G22970.4 33.081 396 239 9 80 463 28 409 1.94e-49 175
Msa0430420 AT3G12220.1 31.043 422 266 10 77 487 27 434 2.39e-49 175
Msa0430420 AT1G33540.2 31.368 424 249 13 95 485 4 418 4.90e-49 174
Msa0430420 AT3G10450.4 31.527 406 244 10 74 463 26 413 8.08e-49 173
Msa0430420 AT3G12203.3 30.238 420 267 11 77 485 9 413 5.62e-48 171
Msa0430420 AT1G73290.1 30.787 432 268 13 68 486 23 436 6.64e-48 171
Msa0430420 AT1G73310.1 30.626 431 260 11 74 486 30 439 8.67e-48 171
Msa0430420 AT3G12203.1 30.238 420 267 11 77 485 30 434 8.76e-48 171
Msa0430420 AT3G12230.1 30.332 422 265 13 77 485 27 432 5.45e-47 169
Msa0430420 AT2G22920.1 32.905 389 224 11 80 450 28 397 7.17e-47 168
Msa0430420 AT5G09640.1 30.022 453 256 16 77 485 27 462 7.96e-47 169
Msa0430420 AT3G12220.2 30.641 421 264 11 78 487 1 404 8.33e-47 167
Msa0430420 AT2G22980.2 31.818 396 240 10 80 463 29 406 1.95e-46 167
Msa0430420 AT2G22980.4 31.899 395 239 10 80 462 29 405 3.60e-46 167
Msa0430420 AT3G12240.1 30.714 420 266 14 77 485 28 433 3.67e-46 167
Msa0430420 AT3G10450.3 31.429 385 230 10 95 463 4 370 7.16e-46 164
Msa0430420 AT3G12203.2 30.179 391 247 11 106 485 1 376 4.44e-44 159
Msa0430420 AT1G73290.3 30.633 395 245 11 68 450 23 400 2.33e-43 158
Msa0430420 AT1G15000.1 30.073 409 248 15 93 485 37 423 9.71e-43 157
Msa0430420 AT1G73310.2 30.789 393 235 9 74 449 30 402 1.25e-42 157
Msa0430420 AT2G22970.2 36.260 262 155 6 80 333 28 285 3.76e-38 142
Msa0430420 AT2G22920.4 35.741 263 156 5 80 333 28 286 4.79e-38 142
Msa0430420 AT1G73290.2 35.065 231 143 3 68 293 23 251 5.74e-38 141
Msa0430420 AT2G22990.6 30.448 335 202 11 165 486 1 317 2.42e-37 140
Msa0430420 AT1G73280.2 34.545 275 167 5 68 333 24 294 1.27e-36 139
Msa0430420 AT2G22990.2 30.149 335 203 11 165 486 1 317 1.73e-36 137
Msa0430420 AT2G22980.3 36.122 263 152 6 80 333 29 284 5.26e-36 137
Msa0430420 AT3G12220.3 38.426 216 126 4 77 287 27 240 5.13e-34 132
Msa0430420 AT5G36180.5 29.360 344 212 9 154 485 12 336 5.20e-31 123
Msa0430420 AT5G36180.3 29.360 344 212 9 154 485 12 336 5.20e-31 123
Msa0430420 AT1G73280.4 29.070 344 215 10 154 486 12 337 1.87e-30 121
Msa0430420 AT1G73280.3 29.091 330 205 10 168 486 1 312 9.81e-28 113
Msa0430420 AT5G22960.1 34.659 176 93 3 82 257 25 178 1.39e-27 109
Msa0430420 AT5G36180.2 28.571 322 200 8 154 463 12 315 4.23e-26 108
Msa0430420 AT2G22980.5 28.758 306 194 8 165 463 1 289 2.11e-24 103
Msa0430420 AT1G73310.3 28.571 308 189 7 154 449 12 300 3.32e-24 103
Msa0430420 AT5G36180.4 28.664 307 190 7 154 449 12 300 9.28e-24 102
Msa0430420 AT2G27920.1 26.376 436 257 18 94 482 37 455 6.85e-23 101
Msa0430420 AT2G22920.3 27.881 269 162 10 231 485 3 253 7.67e-13 68.9

Find 116 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTAGTATTGTGGCTTAA+TGG 0.193981 3_2:-82221957 Msa0430420:CDS
ATTACTCAACTTGAGTTTAT+TGG 0.209420 3_2:-82222288 Msa0430420:CDS
GCTTGACTAGCTTTGCTATA+TGG 0.232639 3_2:+82222257 None:intergenic
GACCCTTGTTCTGATTATTA+TGG 0.237969 3_2:-82220593 Msa0430420:CDS
ACTGGGGTATGGAGCCTTTC+AGG 0.238241 3_2:-82221416 Msa0430420:CDS
TGATGATGCCACAAGTTTAA+AGG 0.260603 3_2:-82220846 Msa0430420:CDS
ACAGTTGGTAAGATGGTAAT+TGG 0.266699 3_2:+82220353 None:intergenic
GGTTTAGTTGAAGGGTTATA+TGG 0.270576 3_2:+82221978 None:intergenic
GGACGCCAAGCTGCGTTTAT+AGG 0.274588 3_2:+82220070 None:intergenic
CTTAGAACCAATTAATTTGA+TGG 0.278306 3_2:+82219661 None:intergenic
TCGATAGCGGCATTAAATTA+TGG 0.305820 3_2:-82220319 Msa0430420:CDS
CTGCGTTTATAGGGAGCTTA+AGG 0.310250 3_2:+82220080 None:intergenic
TTCATGCAAAACCTACAAAT+TGG 0.311190 3_2:-82220532 Msa0430420:CDS
TATACCGTAACCTGTATTCT+TGG 0.320202 3_2:-82221354 Msa0430420:CDS
CTGCAATGGGTCCAATTTGT+AGG 0.327490 3_2:+82220521 None:intergenic
AGGACCTGGCTGTTCCTCAC+TGG 0.332819 3_2:-82221434 Msa0430420:CDS
GCTTGGCGTCCATGGTATTC+TGG 0.333942 3_2:-82220058 Msa0430420:CDS
ATCCTCCCAAGACTCTTTCT+TGG 0.339640 3_2:-82222193 Msa0430420:CDS
GATGATGCCACAAGTTTAAA+GGG 0.364178 3_2:-82220845 Msa0430420:CDS
ATCATTGTCAAAGCCCGTTC+TGG 0.370318 3_2:+82219721 None:intergenic
ATGATCTCATCATTCCTCTA+TGG 0.384946 3_2:-82219703 Msa0430420:CDS
GACGCCAAGCTGCGTTTATA+GGG 0.390982 3_2:+82220071 None:intergenic
TCCAAGCTGGCAACCAGAAC+GGG 0.395617 3_2:-82219734 Msa0430420:CDS
GCCCGTTCTGGTTGCCAGCT+TGG 0.397914 3_2:+82219733 None:intergenic
TTTATTGTTGTGAAGAATAG+TGG 0.404755 3_2:+82221017 None:intergenic
CACCTTCATTCCAAGAATAC+AGG 0.411785 3_2:+82221344 None:intergenic
GGCTGTTCCTCACTGGGGTA+TGG 0.417363 3_2:-82221427 Msa0430420:CDS
AACCTCTGGTCTATTTAGAT+AGG 0.422418 3_2:+82220565 None:intergenic
AATTTCAGATAGGGAATGCT+TGG 0.423855 3_2:-82220871 Msa0430420:intron
CAAGACTCTTTCTTGGGAAG+TGG 0.424295 3_2:-82222186 Msa0430420:CDS
TATGAAAATCCCACTCCTGC+TGG 0.427452 3_2:+82221204 None:intergenic
TCCTCCCAAGACTCTTTCTT+GGG 0.428322 3_2:-82222192 Msa0430420:CDS
GCATTAAATTATGGATATAC+AGG 0.431413 3_2:-82220310 Msa0430420:intron
AACATACAGAAATGCCTTTG+AGG 0.436367 3_2:+82220971 None:intergenic
CCTATGTCTTCCTCATCAAC+TGG 0.443865 3_2:-82221125 Msa0430420:CDS
TGCGTTTATAGGGAGCTTAA+GGG 0.446999 3_2:+82220081 None:intergenic
TTGCTCAAAATTCACTCCAT+AGG 0.448912 3_2:+82222067 None:intergenic
AATTAATTTGATGGTGAACT+AGG 0.449264 3_2:+82219670 None:intergenic
CTACAAATTGGACCCATTGC+AGG 0.456745 3_2:-82220520 Msa0430420:intron
CACTTCCCAAGAAAGAGTCT+TGG 0.457536 3_2:+82222187 None:intergenic
AATACTAAAGGTTTAGTTGA+AGG 0.459170 3_2:+82221969 None:intergenic
GGACCTGGCTGTTCCTCACT+GGG 0.459617 3_2:-82221433 Msa0430420:CDS
CTAAAGGCCTTCTTTGAACA+TGG 0.467756 3_2:-82220704 Msa0430420:CDS
CAACTAAACCTTTAGTATTG+TGG 0.468364 3_2:-82221965 Msa0430420:CDS
ATCTCCTGATTTGTCATAGT+CGG 0.468625 3_2:+82221167 None:intergenic
GACAAGATTGTCACATTGCC+TGG 0.468983 3_2:-82222095 Msa0430420:CDS
ACTTCCCAAGAAAGAGTCTT+GGG 0.474421 3_2:+82222188 None:intergenic
GAGGAAGACATAGGCATCCT+TGG 0.475321 3_2:+82221134 None:intergenic
TATCTTTCCATGTTCAAAGA+AGG 0.476920 3_2:+82220697 None:intergenic
ACATTGCCTGGTCAACCCTA+TGG 0.477819 3_2:-82222083 Msa0430420:CDS
CATTCCAAGAATACAGGTTA+CGG 0.481730 3_2:+82221350 None:intergenic
TGCTCAAAATTCACTCCATA+GGG 0.485269 3_2:+82222068 None:intergenic
AAATAGACCAGAGGTTCAAA+AGG 0.494500 3_2:-82220558 Msa0430420:CDS
ATACTAAAGGTTTAGTTGAA+GGG 0.494760 3_2:+82221970 None:intergenic
TAAACGCAGCTTGGCGTCCA+TGG 0.502210 3_2:-82220066 Msa0430420:CDS
TATAGAATATTACCTGCAAT+GGG 0.505247 3_2:+82220508 None:intergenic
TTATAGAATATTACCTGCAA+TGG 0.506360 3_2:+82220507 None:intergenic
TATCAATAATGTAACACTAA+AGG 0.509465 3_2:-82220720 Msa0430420:CDS
CCATTAAGCCACAATACTAA+AGG 0.509726 3_2:+82221957 None:intergenic
GTCACTGTTGATCCTGAGGC+TGG 0.511770 3_2:-82222032 Msa0430420:CDS
GCTGATGTTGCACCTCAAGA+GGG 0.512467 3_2:-82222131 Msa0430420:CDS
AACCTGTATTCTTGGAATGA+AGG 0.514399 3_2:-82221346 Msa0430420:intron
ACATCCGACTATGACAAATC+AGG 0.514877 3_2:-82221171 Msa0430420:CDS
TTTGTTACAGTGAGAGGAGC+AGG 0.515378 3_2:-82219766 Msa0430420:CDS
TGTCTTCCTCATCAACTGGC+TGG 0.515449 3_2:-82221121 Msa0430420:CDS
AAAAGCTCTCTTCCAGCCTC+AGG 0.516852 3_2:+82222020 None:intergenic
CCATCAGAGTTGATTCTGAA+GGG 0.523486 3_2:+82221385 None:intergenic
TGCTGATGTTGCACCTCAAG+AGG 0.525644 3_2:-82222132 Msa0430420:CDS
TCCATGGTATTCTGGAAAAG+AGG 0.526540 3_2:-82220050 Msa0430420:intron
GCCATCAGAGTTGATTCTGA+AGG 0.530541 3_2:+82221384 None:intergenic
ATACTTGACAGTTGGTAAGA+TGG 0.530659 3_2:+82220346 None:intergenic
AGTTGAGAACAAGATGAAGA+AGG 0.533495 3_2:-82222330 None:intergenic
TTGACATTTGTTACAGTGAG+AGG 0.534371 3_2:-82219772 Msa0430420:CDS
TTCACTCCATAGGGTTGACC+AGG 0.534868 3_2:+82222077 None:intergenic
CCACTCCTGCTGGAGACTCT+AGG 0.536283 3_2:+82221214 None:intergenic
ATGACCAGCATAACTCTCTC+CGG 0.536968 3_2:+82221059 None:intergenic
ATAGTCGTCTTCTTACTGAC+TGG 0.537929 3_2:-82220385 Msa0430420:intron
CCTAGAGTCTCCAGCAGGAG+TGG 0.545565 3_2:-82221214 Msa0430420:CDS
GGATATGTGGTGGGATACAA+AGG 0.546750 3_2:-82219796 Msa0430420:CDS
TTCCAAGCTGGCAACCAGAA+CGG 0.550031 3_2:-82219735 Msa0430420:CDS
AGCTCCCTATAAACGCAGCT+TGG 0.550821 3_2:-82220075 Msa0430420:CDS
ATCTCTCCAGCCAGTTGATG+AGG 0.560761 3_2:+82221115 None:intergenic
AACACTGTTATTAACCTCAA+AGG 0.561939 3_2:-82220985 Msa0430420:CDS
CAGGACATCTTGTTCCAAGC+TGG 0.567894 3_2:-82219747 Msa0430420:CDS
CTAGAGTCTCCAGCAGGAGT+GGG 0.569156 3_2:-82221213 Msa0430420:CDS
TACCCCAGTGAGGAACAGCC+AGG 0.578470 3_2:+82221430 None:intergenic
CCCTTCAGAATCAACTCTGA+TGG 0.578815 3_2:-82221385 Msa0430420:CDS
ATAACCGGAGAGAGTTATGC+TGG 0.580139 3_2:-82221063 Msa0430420:CDS
CTCTTCCTAGAGTCTCCAGC+AGG 0.582921 3_2:-82221219 Msa0430420:CDS
TCGATGAGATACTTGACAGT+TGG 0.583309 3_2:+82220338 None:intergenic
TAATAATAATGACAGATTGG+AGG 0.585531 3_2:-82219817 Msa0430420:intron
TATGGAGCCTTTCAGGAGCT+AGG 0.588840 3_2:-82221409 Msa0430420:CDS
GAAGGGTCCTAGCTCCTGAA+AGG 0.589336 3_2:+82221402 None:intergenic
AGGAGATAAATCAACTGCCA+AGG 0.589939 3_2:-82221151 Msa0430420:CDS
GCTTGCATTAGCCCCTCTTG+AGG 0.590255 3_2:+82222119 None:intergenic
CCAGTTGATGAGGAAGACAT+AGG 0.602150 3_2:+82221125 None:intergenic
TTAGTATTGTGGCTTAATGG+AGG 0.610025 3_2:-82221954 Msa0430420:intron
TAGGAGGCAAACTTCCATAG+AGG 0.611627 3_2:+82219689 None:intergenic
CAGTGGTGATACAGATGCAG+TGG 0.613592 3_2:-82220137 Msa0430420:CDS
ATGACAGATTGGAGGATATG+TGG 0.614174 3_2:-82219809 Msa0430420:intron
GAACCATAATAATCAGAACA+AGG 0.615337 3_2:+82220590 None:intergenic
AGTTCAAAGCATGAGTCCAA+AGG 0.615853 3_2:+82220810 None:intergenic
CTACGTCACTGTTGATCCTG+AGG 0.618660 3_2:-82222036 Msa0430420:CDS
TAATTTGATGGTGAACTAGG+AGG 0.626163 3_2:+82219673 None:intergenic
ATGATGCCACAAGTTTAAAG+GGG 0.629930 3_2:-82220844 Msa0430420:CDS
GTCAAGTATCTCATCGATAG+CGG 0.632646 3_2:-82220332 Msa0430420:CDS
CAGATTGGAGGATATGTGGT+GGG 0.633074 3_2:-82219805 Msa0430420:CDS
AACCATAATAATCAGAACAA+GGG 0.642040 3_2:+82220591 None:intergenic
CTGATGTTGCACCTCAAGAG+GGG 0.658453 3_2:-82222130 Msa0430420:CDS
TCCCAAGAAAGAGTCTTGGG+AGG 0.663424 3_2:+82222191 None:intergenic
AGAATAGTGGATGCAAGCTG+AGG 0.669219 3_2:+82221030 None:intergenic
TGCCTATCTAAATAGACCAG+AGG 0.674801 3_2:-82220567 Msa0430420:CDS
AGAGAGGAGTCATGACACAA+TGG 0.676190 3_2:+82220653 None:intergenic
ACAGATTGGAGGATATGTGG+TGG 0.699486 3_2:-82219806 Msa0430420:intron
AAAGGCTCCATACCCCAGTG+AGG 0.728637 3_2:+82221420 None:intergenic
GACCTGGCTGTTCCTCACTG+GGG 0.729552 3_2:-82221432 Msa0430420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATTTCATAATGATAAAT+TGG + chr3_2:82220736-82220755 None:intergenic 15.0%
!!! TACTTTAAAAAATTTCAGAT+AGG - chr3_2:82221108-82221127 Msa0430420:CDS 15.0%
!!! ACTTTAAAAAATTTCAGATA+GGG - chr3_2:82221109-82221128 Msa0430420:CDS 15.0%
!!! TTTGTTATTTTGTAAATTTG+AGG - chr3_2:82222034-82222053 Msa0430420:CDS 15.0%
!!! TTGTTATTTTGTAAATTTGA+GGG - chr3_2:82222035-82222054 Msa0430420:CDS 15.0%
!! ATTTCAAAAATGTTATTACT+TGG + chr3_2:82222140-82222159 None:intergenic 15.0%
!!! TTGCAAATTTTCTTATTTAG+AGG + chr3_2:82220198-82220217 None:intergenic 20.0%
!!! CTTTTGATATTAAAAGAACA+TGG - chr3_2:82220338-82220357 Msa0430420:CDS 20.0%
!! TATCAATAATGTAACACTAA+AGG - chr3_2:82221269-82221288 Msa0430420:intron 20.0%
!! TTAATTTATTCGTAGTTTGA+TGG - chr3_2:82221970-82221989 Msa0430420:CDS 20.0%
!! TTGTAATAATAATGACAGAT+TGG - chr3_2:82222169-82222188 Msa0430420:CDS 20.0%
! ATTACTCAACTTGAGTTTAT+TGG - chr3_2:82219701-82219720 Msa0430420:CDS 25.0%
!!! AGAGCTTTTCTATTATTTTG+TGG - chr3_2:82219983-82220002 Msa0430420:intron 25.0%
! ATACTAAAGGTTTAGTTGAA+GGG + chr3_2:82220022-82220041 None:intergenic 25.0%
! AATACTAAAGGTTTAGTTGA+AGG + chr3_2:82220023-82220042 None:intergenic 25.0%
! TACTCTTGATGAAATTATTC+CGG - chr3_2:82220398-82220417 Msa0430420:intron 25.0%
! TTTATTGTTGTGAAGAATAG+TGG + chr3_2:82220975-82220994 None:intergenic 25.0%
! AACCATAATAATCAGAACAA+GGG + chr3_2:82221401-82221420 None:intergenic 25.0%
! TATAGAATATTACCTGCAAT+GGG + chr3_2:82221484-82221503 None:intergenic 25.0%
! TTATAGAATATTACCTGCAA+TGG + chr3_2:82221485-82221504 None:intergenic 25.0%
! GCATTAAATTATGGATATAC+AGG - chr3_2:82221679-82221698 Msa0430420:intron 25.0%
! ATTACTTGGTATACAAGAAA+AGG + chr3_2:82222126-82222145 None:intergenic 25.0%
! TAATAATAATGACAGATTGG+AGG - chr3_2:82222172-82222191 Msa0430420:CDS 25.0%
! GTGAATTTTGAGCAATATTC+AGG - chr3_2:82219930-82219949 Msa0430420:intron 30.0%
CAACTAAACCTTTAGTATTG+TGG - chr3_2:82220024-82220043 Msa0430420:intron 30.0%
TAAAAGAACATGGTAAAACC+TGG - chr3_2:82220348-82220367 Msa0430420:CDS 30.0%
! TCATAGTTGTAAGAGTGTAA+GGG + chr3_2:82220450-82220469 None:intergenic 30.0%
! ACATAATGTTTGAAACTCAC+AGG - chr3_2:82220535-82220554 Msa0430420:CDS 30.0%
! ACCAGAGATTTTTACATAAC+CGG - chr3_2:82220911-82220930 Msa0430420:intron 30.0%
AACACTGTTATTAACCTCAA+AGG - chr3_2:82221004-82221023 Msa0430420:CDS 30.0%
TGTGAGTTACATTTCATACT+TGG + chr3_2:82221058-82221077 None:intergenic 30.0%
AAAAAACCCCTTTAAACTTG+TGG + chr3_2:82221154-82221173 None:intergenic 30.0%
TATCTTTCCATGTTCAAAGA+AGG + chr3_2:82221295-82221314 None:intergenic 30.0%
GAACCATAATAATCAGAACA+AGG + chr3_2:82221402-82221421 None:intergenic 30.0%
TTCATGCAAAACCTACAAAT+TGG - chr3_2:82221457-82221476 Msa0430420:intron 30.0%
TTCTATGCTAATCAAGAATG+TGG - chr3_2:82221563-82221582 Msa0430420:intron 30.0%
TGTGAATAATGACTAATGAG+AGG - chr3_2:82221794-82221813 Msa0430420:intron 30.0%
! TTCCAACTCCTAAATTTTGA+TGG - chr3_2:82221817-82221836 Msa0430420:intron 30.0%
ATTCTAATTCACTCCATATG+TGG - chr3_2:82222089-82222108 Msa0430420:CDS 30.0%
GGTAATAAATCAACCACATA+TGG + chr3_2:82222105-82222124 None:intergenic 30.0%
TGCTCAAAATTCACTCCATA+GGG + chr3_2:82219924-82219943 None:intergenic 35.0%
TTGCTCAAAATTCACTCCAT+AGG + chr3_2:82219925-82219944 None:intergenic 35.0%
GGTTTAGTTGAAGGGTTATA+TGG + chr3_2:82220014-82220033 None:intergenic 35.0%
CCATTAAGCCACAATACTAA+AGG + chr3_2:82220035-82220054 None:intergenic 35.0%
CCTTTAGTATTGTGGCTTAA+TGG - chr3_2:82220032-82220051 Msa0430420:intron 35.0%
TTAGTATTGTGGCTTAATGG+AGG - chr3_2:82220035-82220054 Msa0430420:intron 35.0%
! TGATGATGCTCATAATAACC+AGG + chr3_2:82220369-82220388 None:intergenic 35.0%
! CTCATAGTTGTAAGAGTGTA+AGG + chr3_2:82220451-82220470 None:intergenic 35.0%
TATACCGTAACCTGTATTCT+TGG - chr3_2:82220635-82220654 Msa0430420:CDS 35.0%
CATTCCAAGAATACAGGTTA+CGG + chr3_2:82220642-82220661 None:intergenic 35.0%
AACCTGTATTCTTGGAATGA+AGG - chr3_2:82220643-82220662 Msa0430420:CDS 35.0%
! ATCTCCTGATTTGTCATAGT+CGG + chr3_2:82220825-82220844 None:intergenic 35.0%
!!! AAATCTCTGGTTTTGTACTG+TGG + chr3_2:82220902-82220921 None:intergenic 35.0%
TCCGGTTATGTAAAAATCTC+TGG + chr3_2:82220915-82220934 None:intergenic 35.0%
AACATACAGAAATGCCTTTG+AGG + chr3_2:82221021-82221040 None:intergenic 35.0%
AATTTCAGATAGGGAATGCT+TGG - chr3_2:82221118-82221137 Msa0430420:CDS 35.0%
! TGATGATGCCACAAGTTTAA+AGG - chr3_2:82221143-82221162 Msa0430420:CDS 35.0%
GATGATGCCACAAGTTTAAA+GGG - chr3_2:82221144-82221163 Msa0430420:CDS 35.0%
ATGATGCCACAAGTTTAAAG+GGG - chr3_2:82221145-82221164 Msa0430420:CDS 35.0%
!!! AGGGGTTTTTTGATTACCTT+TGG - chr3_2:82221163-82221182 Msa0430420:CDS 35.0%
!! AGTTGAACGATTTTTCAGAG+AGG + chr3_2:82221355-82221374 None:intergenic 35.0%
! TCTCTGAAAAATCGTTCAAC+TGG - chr3_2:82221354-82221373 Msa0430420:CDS 35.0%
GACCCTTGTTCTGATTATTA+TGG - chr3_2:82221396-82221415 Msa0430420:CDS 35.0%
AACCTCTGGTCTATTTAGAT+AGG + chr3_2:82221427-82221446 None:intergenic 35.0%
AAATAGACCAGAGGTTCAAA+AGG - chr3_2:82221431-82221450 Msa0430420:CDS 35.0%
!! ACAGTTGGTAAGATGGTAAT+TGG + chr3_2:82221639-82221658 None:intergenic 35.0%
!! ATACTTGACAGTTGGTAAGA+TGG + chr3_2:82221646-82221665 None:intergenic 35.0%
! TCGATAGCGGCATTAAATTA+TGG - chr3_2:82221670-82221689 Msa0430420:intron 35.0%
CACCATCAAAATTTAGGAGT+TGG + chr3_2:82221822-82221841 None:intergenic 35.0%
AGAACGCACCATCAAAATTT+AGG + chr3_2:82221828-82221847 None:intergenic 35.0%
! TTGACATTTGTTACAGTGAG+AGG - chr3_2:82222217-82222236 Msa0430420:CDS 35.0%
ATGATCTCATCATTCCTCTA+TGG - chr3_2:82222286-82222305 Msa0430420:CDS 35.0%
!! TAATTTGATGGTGAACTAGG+AGG + chr3_2:82222319-82222338 None:intergenic 35.0%
!! GCTTGACTAGCTTTGCTATA+TGG + chr3_2:82219735-82219754 None:intergenic 40.0%
ACTTCCCAAGAAAGAGTCTT+GGG + chr3_2:82219804-82219823 None:intergenic 40.0%
CTTATTTAGAGGTCTCTGCA+AGG + chr3_2:82220187-82220206 None:intergenic 40.0%
TGATGAAATTATTCCGGCCA+TGG - chr3_2:82220404-82220423 Msa0430420:intron 40.0%
! CCATCAGAGTTGATTCTGAA+GGG + chr3_2:82220607-82220626 None:intergenic 40.0%
CACCTTCATTCCAAGAATAC+AGG + chr3_2:82220648-82220667 None:intergenic 40.0%
ACATCCGACTATGACAAATC+AGG - chr3_2:82220818-82220837 Msa0430420:CDS 40.0%
AGGAGATAAATCAACTGCCA+AGG - chr3_2:82220838-82220857 Msa0430420:CDS 40.0%
AGTTCAAAGCATGAGTCCAA+AGG + chr3_2:82221182-82221201 None:intergenic 40.0%
CTAAAGGCCTTCTTTGAACA+TGG - chr3_2:82221285-82221304 Msa0430420:intron 40.0%
TGCCTATCTAAATAGACCAG+AGG - chr3_2:82221422-82221441 Msa0430420:CDS 40.0%
ATAGTCGTCTTCTTACTGAC+TGG - chr3_2:82221604-82221623 Msa0430420:intron 40.0%
TCGATGAGATACTTGACAGT+TGG + chr3_2:82221654-82221673 None:intergenic 40.0%
GTCAAGTATCTCATCGATAG+CGG - chr3_2:82221657-82221676 Msa0430420:intron 40.0%
TGCGTTTATAGGGAGCTTAA+GGG + chr3_2:82221911-82221930 None:intergenic 40.0%
! TCCATGGTATTCTGGAAAAG+AGG - chr3_2:82221939-82221958 Msa0430420:intron 40.0%
! ACCTCTTTTCCAGAATACCA+TGG + chr3_2:82221943-82221962 None:intergenic 40.0%
ATGACAGATTGGAGGATATG+TGG - chr3_2:82222180-82222199 Msa0430420:CDS 40.0%
ATCCTCCCAAGACTCTTTCT+TGG - chr3_2:82219796-82219815 Msa0430420:CDS 45.0%
TCCTCCCAAGACTCTTTCTT+GGG - chr3_2:82219797-82219816 Msa0430420:CDS 45.0%
CACTTCCCAAGAAAGAGTCT+TGG + chr3_2:82219805-82219824 None:intergenic 45.0%
CAAGACTCTTTCTTGGGAAG+TGG - chr3_2:82219803-82219822 Msa0430420:CDS 45.0%
GACAAGATTGTCACATTGCC+TGG - chr3_2:82219894-82219913 Msa0430420:intron 45.0%
GAGAGTTTAACAACCATGGC+CGG + chr3_2:82220420-82220439 None:intergenic 45.0%
GGCCATGGTTGTTAAACTCT+CGG - chr3_2:82220419-82220438 Msa0430420:intron 45.0%
GCCATGGTTGTTAAACTCTC+GGG - chr3_2:82220420-82220439 Msa0430420:intron 45.0%
! TGTTTGAAACTCACAGGACC+TGG - chr3_2:82220541-82220560 Msa0430420:CDS 45.0%
CCCTTCAGAATCAACTCTGA+TGG - chr3_2:82220604-82220623 Msa0430420:CDS 45.0%
! GCCATCAGAGTTGATTCTGA+AGG + chr3_2:82220608-82220627 None:intergenic 45.0%
TATGAAAATCCCACTCCTGC+TGG + chr3_2:82220788-82220807 None:intergenic 45.0%
!! CCAGTTGATGAGGAAGACAT+AGG + chr3_2:82220867-82220886 None:intergenic 45.0%
CCTATGTCTTCCTCATCAAC+TGG - chr3_2:82220864-82220883 Msa0430420:CDS 45.0%
ATAACCGGAGAGAGTTATGC+TGG - chr3_2:82220926-82220945 Msa0430420:intron 45.0%
ATGACCAGCATAACTCTCTC+CGG + chr3_2:82220933-82220952 None:intergenic 45.0%
!! AGAATAGTGGATGCAAGCTG+AGG + chr3_2:82220962-82220981 None:intergenic 45.0%
AGAGAGGAGTCATGACACAA+TGG + chr3_2:82221339-82221358 None:intergenic 45.0%
! TGAAGAGCCTTTTGAACCTC+TGG + chr3_2:82221441-82221460 None:intergenic 45.0%
CTGCAATGGGTCCAATTTGT+AGG + chr3_2:82221471-82221490 None:intergenic 45.0%
CTACAAATTGGACCCATTGC+AGG - chr3_2:82221469-82221488 Msa0430420:intron 45.0%
TGCATCTGTATCACCACTGT+AGG + chr3_2:82221851-82221870 None:intergenic 45.0%
CTGCGTTTATAGGGAGCTTA+AGG + chr3_2:82221912-82221931 None:intergenic 45.0%
ACAGATTGGAGGATATGTGG+TGG - chr3_2:82222183-82222202 Msa0430420:CDS 45.0%
CAGATTGGAGGATATGTGGT+GGG - chr3_2:82222184-82222203 Msa0430420:CDS 45.0%
! GGATATGTGGTGGGATACAA+AGG - chr3_2:82222193-82222212 Msa0430420:CDS 45.0%
TTTGTTACAGTGAGAGGAGC+AGG - chr3_2:82222223-82222242 Msa0430420:CDS 45.0%
ATCATTGTCAAAGCCCGTTC+TGG + chr3_2:82222271-82222290 None:intergenic 45.0%
TAGGAGGCAAACTTCCATAG+AGG + chr3_2:82222303-82222322 None:intergenic 45.0%
TCCCAAGAAAGAGTCTTGGG+AGG + chr3_2:82219801-82219820 None:intergenic 50.0%
TGCTGATGTTGCACCTCAAG+AGG - chr3_2:82219857-82219876 Msa0430420:intron 50.0%
GCTGATGTTGCACCTCAAGA+GGG - chr3_2:82219858-82219877 Msa0430420:intron 50.0%
CTGATGTTGCACCTCAAGAG+GGG - chr3_2:82219859-82219878 Msa0430420:intron 50.0%
ACATTGCCTGGTCAACCCTA+TGG - chr3_2:82219906-82219925 Msa0430420:intron 50.0%
TTCACTCCATAGGGTTGACC+AGG + chr3_2:82219915-82219934 None:intergenic 50.0%
CTACGTCACTGTTGATCCTG+AGG - chr3_2:82219953-82219972 Msa0430420:intron 50.0%
AAAAGCTCTCTTCCAGCCTC+AGG + chr3_2:82219972-82219991 None:intergenic 50.0%
GCCCGAGAGTTTAACAACCA+TGG + chr3_2:82220424-82220443 None:intergenic 50.0%
TATGGAGCCTTTCAGGAGCT+AGG - chr3_2:82220580-82220599 Msa0430420:CDS 50.0%
GAGGAAGACATAGGCATCCT+TGG + chr3_2:82220858-82220877 None:intergenic 50.0%
TGTCTTCCTCATCAACTGGC+TGG - chr3_2:82220868-82220887 Msa0430420:intron 50.0%
! ATCTCTCCAGCCAGTTGATG+AGG + chr3_2:82220877-82220896 None:intergenic 50.0%
CAGTGGTGATACAGATGCAG+TGG - chr3_2:82221852-82221871 Msa0430420:intron 50.0%
AGCTCCCTATAAACGCAGCT+TGG - chr3_2:82221914-82221933 Msa0430420:intron 50.0%
GACGCCAAGCTGCGTTTATA+GGG + chr3_2:82221921-82221940 None:intergenic 50.0%
CAGGACATCTTGTTCCAAGC+TGG - chr3_2:82222242-82222261 Msa0430420:CDS 50.0%
TTCCAAGCTGGCAACCAGAA+CGG - chr3_2:82222254-82222273 Msa0430420:CDS 50.0%
GCTTGCATTAGCCCCTCTTG+AGG + chr3_2:82219873-82219892 None:intergenic 55.0%
GTCACTGTTGATCCTGAGGC+TGG - chr3_2:82219957-82219976 Msa0430420:intron 55.0%
AAAGGCTCCATACCCCAGTG+AGG + chr3_2:82220572-82220591 None:intergenic 55.0%
ACTGGGGTATGGAGCCTTTC+AGG - chr3_2:82220573-82220592 Msa0430420:CDS 55.0%
GAAGGGTCCTAGCTCCTGAA+AGG + chr3_2:82220590-82220609 None:intergenic 55.0%
CTCTTCCTAGAGTCTCCAGC+AGG - chr3_2:82220770-82220789 Msa0430420:CDS 55.0%
CTAGAGTCTCCAGCAGGAGT+GGG - chr3_2:82220776-82220795 Msa0430420:CDS 55.0%
GATGGTGCGTTCTCCTACAG+TGG - chr3_2:82221835-82221854 Msa0430420:intron 55.0%
GGACGCCAAGCTGCGTTTAT+AGG + chr3_2:82221922-82221941 None:intergenic 55.0%
TAAACGCAGCTTGGCGTCCA+TGG - chr3_2:82221923-82221942 Msa0430420:intron 55.0%
GCTTGGCGTCCATGGTATTC+TGG - chr3_2:82221931-82221950 Msa0430420:intron 55.0%
TCCAAGCTGGCAACCAGAAC+GGG - chr3_2:82222255-82222274 Msa0430420:CDS 55.0%
AGGACCTGGCTGTTCCTCAC+TGG - chr3_2:82220555-82220574 Msa0430420:CDS 60.0%
GGACCTGGCTGTTCCTCACT+GGG - chr3_2:82220556-82220575 Msa0430420:CDS 60.0%
GACCTGGCTGTTCCTCACTG+GGG - chr3_2:82220557-82220576 Msa0430420:CDS 60.0%
TACCCCAGTGAGGAACAGCC+AGG + chr3_2:82220562-82220581 None:intergenic 60.0%
GGCTGTTCCTCACTGGGGTA+TGG - chr3_2:82220562-82220581 Msa0430420:CDS 60.0%
CCACTCCTGCTGGAGACTCT+AGG + chr3_2:82220778-82220797 None:intergenic 60.0%
CCTAGAGTCTCCAGCAGGAG+TGG - chr3_2:82220775-82220794 Msa0430420:CDS 60.0%
! GCCCGTTCTGGTTGCCAGCT+TGG + chr3_2:82222259-82222278 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 82219672 82222339 82219672 ID=Msa0430420;Name=Msa0430420
chr3_2 mRNA 82219672 82222339 82219672 ID=Msa0430420-mRNA-1;Parent=Msa0430420;Name=Msa0430420-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|0.85|1|1|7|0|494
chr3_2 exon 82221955 82222339 82221955 ID=Msa0430420-mRNA-1:exon:22833;Parent=Msa0430420-mRNA-1
chr3_2 exon 82221347 82221454 82221347 ID=Msa0430420-mRNA-1:exon:22832;Parent=Msa0430420-mRNA-1
chr3_2 exon 82220978 82221252 82220978 ID=Msa0430420-mRNA-1:exon:22831;Parent=Msa0430420-mRNA-1
chr3_2 exon 82220521 82220885 82220521 ID=Msa0430420-mRNA-1:exon:22830;Parent=Msa0430420-mRNA-1
chr3_2 exon 82220311 82220403 82220311 ID=Msa0430420-mRNA-1:exon:22829;Parent=Msa0430420-mRNA-1
chr3_2 exon 82220051 82220156 82220051 ID=Msa0430420-mRNA-1:exon:22828;Parent=Msa0430420-mRNA-1
chr3_2 exon 82219672 82219824 82219672 ID=Msa0430420-mRNA-1:exon:22827;Parent=Msa0430420-mRNA-1
chr3_2 CDS 82221955 82222339 82221955 ID=Msa0430420-mRNA-1:cds;Parent=Msa0430420-mRNA-1
chr3_2 CDS 82221347 82221454 82221347 ID=Msa0430420-mRNA-1:cds;Parent=Msa0430420-mRNA-1
chr3_2 CDS 82220978 82221252 82220978 ID=Msa0430420-mRNA-1:cds;Parent=Msa0430420-mRNA-1
chr3_2 CDS 82220521 82220885 82220521 ID=Msa0430420-mRNA-1:cds;Parent=Msa0430420-mRNA-1
chr3_2 CDS 82220311 82220403 82220311 ID=Msa0430420-mRNA-1:cds;Parent=Msa0430420-mRNA-1
chr3_2 CDS 82220051 82220156 82220051 ID=Msa0430420-mRNA-1:cds;Parent=Msa0430420-mRNA-1
chr3_2 CDS 82219672 82219824 82219672 ID=Msa0430420-mRNA-1:cds;Parent=Msa0430420-mRNA-1
Gene Sequence

>Msa0430420

ATGAAGAAGGTTTCTCTTTATGCTTGTTTATTACTCAACTTGAGTTTATTGGTTATTTTTCCATATAGCAAAGCTAGTCAAGCTGATAAACTCAATGAGTTTATTCTGTCTAGAAAATCTCAGAATCCTCCCAAGACTCTTTCTTGGGAAGTGGAAGATGCATTGAAAACACTTTCTTCTTCTGCTGCTGATGTTGCACCTCAAGAGGGGCTAATGCAAGCTGACAAGATTGTCACATTGCCTGGTCAACCCTATGGAGTGAATTTTGAGCAATATTCAGGCTACGTCACTGTTGATCCTGAGGCTGGAAGAGAGCTTTTCTATTATTTTGTGGAGTCTCCATATAACCCTTCAACTAAACCTTTAGTATTGTGGCTTAATGGAGGACCTGGCTGTTCCTCACTGGGGTATGGAGCCTTTCAGGAGCTAGGACCCTTCAGAATCAACTCTGATGGCAAAACACTATACCGTAACCTGTATTCTTGGAATGAAGTTGCAAATATACTCTTCCTAGAGTCTCCAGCAGGAGTGGGATTTTCATACTCAAATACAACATCCGACTATGACAAATCAGGAGATAAATCAACTGCCAAGGATGCCTATGTCTTCCTCATCAACTGGCTGGAGAGATTTCCACAGTACAAAACCAGAGATTTTTACATAACCGGAGAGAGTTATGCTGGTCATTATGTTCCTCAGCTTGCATCCACTATTCTTCACAACAATAAACTCTATAACAACACTGTTATTAACCTCAAAGGCATTTCTATAGGGAATGCTTGGATTGATGATGCCACAAGTTTAAAGGGGTTTTTTGATTACCTTTGGACTCATGCTTTGAACTCAGATCAAACTCATGAGTTGATTGAGAAGTACTGTGACTTCACTACTGAAAATGTTTCAGCAATTTGTATCAATAATGTAACACTAAAGGCCTTCTTTGAACATGGAAAGATAGACTTATATAACATCTATGCTCCATTGTGTCATGACTCCTCTCTGAAAAATCGTTCAACTGGTTATGTAAGTAATGATTTTGACCCTTGTTCTGATTATTATGGTTCTGCCTATCTAAATAGACCAGAGGTTCAAAAGGCTCTTCATGCAAAACCTACAAATTGGACCCATTGCAGTCGTCTTCTTACTGACTGGAAAGACAGTCCAATTACCATCTTACCAACTGTCAAGTATCTCATCGATAGCGGCATTAAATTATGGATATACAGTGGTGATACAGATGCAGTGGTTTCAGTTACATCTTCAAGATATTCAATCAACACCCTTAAGCTCCCTATAAACGCAGCTTGGCGTCCATGGTATTCTGGAAAAGAGATTGGAGGATATGTGGTGGGATACAAAGGATTGACATTTGTTACAGTGAGAGGAGCAGGACATCTTGTTCCAAGCTGGCAACCAGAACGGGCTTTGACAATGATCTCATCATTCCTCTATGGAAGTTTGCCTCCTAGTTCACCATCAAATTAA

Protein sequence

>Msa0430420

MKKVSLYACLLLNLSLLVIFPYSKASQADKLNEFILSRKSQNPPKTLSWEVEDALKTLSSSAADVAPQEGLMQADKIVTLPGQPYGVNFEQYSGYVTVDPEAGRELFYYFVESPYNPSTKPLVLWLNGGPGCSSLGYGAFQELGPFRINSDGKTLYRNLYSWNEVANILFLESPAGVGFSYSNTTSDYDKSGDKSTAKDAYVFLINWLERFPQYKTRDFYITGESYAGHYVPQLASTILHNNKLYNNTVINLKGISIGNAWIDDATSLKGFFDYLWTHALNSDQTHELIEKYCDFTTENVSAICINNVTLKAFFEHGKIDLYNIYAPLCHDSSLKNRSTGYVSNDFDPCSDYYGSAYLNRPEVQKALHAKPTNWTHCSRLLTDWKDSPITILPTVKYLIDSGIKLWIYSGDTDAVVSVTSSRYSINTLKLPINAAWRPWYSGKEIGGYVVGYKGLTFVTVRGAGHLVPSWQPERALTMISSFLYGSLPPSSPSN*