AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1390050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1390050 MtrunA17_Chr3g0126841 95.122 41 2 0 20 60 3 43 1.39e-22 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 206 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTACACAACCTTTATTAA+AGG 0.130817 tig0021310:+3390 Msa1390050:five_prime_UTR
GAGACATTTATTTAGTATTT+TGG 0.141899 tig0021310:+6128 Msa1390050:intron
ATTTGATTCTTTGTGTAAAT+TGG 0.141989 tig0021310:+3299 Msa1390050:five_prime_UTR
GAGAGTTGTAGATACATTTA+AGG 0.199286 tig0021310:+3227 Msa1390050:five_prime_UTR
AAGTCATGAATTTCAAATAA+TGG 0.211119 tig0021310:-2457 Msa1390050:intergenic
TCATGTTTAAGTTTCAAATT+AGG 0.241119 tig0021310:+2599 Msa1390050:five_prime_UTR
TGTGATTATGCTTCACCTTT+AGG 0.241856 tig0021310:-4529 Msa1390050:intergenic
GCAGTGTATGTTACATTATC+TGG 0.241956 tig0021310:-4281 Msa1390050:intergenic
ATCTATACTGCCATGGTTAA+TGG 0.246662 tig0021310:+3711 Msa1390050:five_prime_UTR
CACTTATGCCATTATCATTA+AGG 0.263753 tig0021310:+2753 Msa1390050:five_prime_UTR
GAGGCTCCGGTGGTGGGGTT+TGG 0.285562 tig0021310:-1998 Msa1390050:intergenic
TTTATTGTTGTGAATGGTTT+TGG 0.290221 tig0021310:-2134 Msa1390050:intergenic
AGTCATGAATTTCAAATAAT+GGG 0.292296 tig0021310:-2456 Msa1390050:intergenic
TAATAATCATCAGTCTGATT+TGG 0.295373 tig0021310:+2894 Msa1390050:five_prime_UTR
ATGACATGCTCCGAGCTCTT+AGG 0.301780 tig0021310:+2920 Msa1390050:five_prime_UTR
GAGCTTGAGGCTCCGGTGGT+GGG 0.302413 tig0021310:-2004 Msa1390050:intergenic
AACAAGTTTGAAATTCTATC+TGG 0.304567 tig0021310:+4500 Msa1390050:five_prime_UTR
CGTATGATGTTTCGACTATC+TGG 0.307016 tig0021310:+4126 Msa1390050:five_prime_UTR
TGTGTTGTGCTTACAGTTTA+AGG 0.312645 tig0021310:+6483 Msa1390050:three_prime_UTR
GCTCCGGTGGTGGGGTTTGG+CGG 0.322193 tig0021310:-1995 Msa1390050:intergenic
AAGCATAATCACACGTGCTT+TGG 0.322709 tig0021310:+4539 Msa1390050:five_prime_UTR
AAGACAGTAACCTTTAATAA+AGG 0.324274 tig0021310:-3400 Msa1390050:intergenic
AGTTTCAAATTAGGAGGTTT+GGG 0.326603 tig0021310:+2608 Msa1390050:five_prime_UTR
GAACATGATATAGGCTTTAT+CGG 0.328554 tig0021310:-3433 Msa1390050:intergenic
ACAAACCAAGCCTCTTGATT+TGG 0.329584 tig0021310:-2717 Msa1390050:intergenic
TGAGCTTGAGGCTCCGGTGG+TGG 0.329829 tig0021310:-2005 Msa1390050:intergenic
CCATGTCGTAAAATACTTGC+TGG 0.343170 tig0021310:-3023 Msa1390050:intergenic
GAGAAGGGTTGTTTCGATAA+AGG 0.344046 tig0021310:-2276 Msa1390050:intergenic
TGACTTGTTTGAGAAACTAT+TGG 0.344942 tig0021310:+2474 Msa1390050:five_prime_UTR
TCGTTAGAATACTCTGTTAC+TGG 0.347059 tig0021310:+2371 Msa1390050:five_prime_UTR
ACCTAAGCAATGCATAATAA+TGG 0.348743 tig0021310:+6283 Msa1390050:CDS
TTTGCTAAGTTGCTTTAAAC+AGG 0.348813 tig0021310:-3817 Msa1390050:intergenic
ACCTACACAGTTCTACTTGA+TGG 0.351820 tig0021310:+4053 Msa1390050:five_prime_UTR
AAGTTTCAAATTAGGAGGTT+TGG 0.355541 tig0021310:+2607 Msa1390050:five_prime_UTR
GTTACTGGAACTTGAATAGA+AGG 0.361417 tig0021310:+2386 Msa1390050:five_prime_UTR
CAGGCCAAAGCTTTACTACT+TGG 0.369655 tig0021310:-5783 Msa1390050:intergenic
AGCATAATCACACGTGCTTT+GGG 0.370936 tig0021310:+4540 Msa1390050:five_prime_UTR
CAATCGGGTGTGTTTCTTGA+TGG 0.371944 tig0021310:+3258 Msa1390050:five_prime_UTR
GCTGCCATGCAACTCTATAA+TGG 0.374847 tig0021310:+6533 Msa1390050:three_prime_UTR
ACCTACATACAATGACATTC+TGG 0.376234 tig0021310:-4621 Msa1390050:intergenic
TTTGATTGATGGACACATAA+AGG 0.377130 tig0021310:+4199 Msa1390050:five_prime_UTR
ATTAAAGGTTACTGTCTTCA+AGG 0.382844 tig0021310:+3405 Msa1390050:five_prime_UTR
ACACAACGCCTTAATGATAA+TGG 0.385362 tig0021310:-2761 Msa1390050:intergenic
CCTTCATTGCCTTGCTGAGA+TGG 0.388928 tig0021310:+3194 Msa1390050:five_prime_UTR
TACTTGATGGGCAATCAAAA+AGG 0.390813 tig0021310:+4066 Msa1390050:five_prime_UTR
TAACTTTCTTATTAACCGTT+TGG 0.394423 tig0021310:+2654 Msa1390050:five_prime_UTR
ATATTGTAAGACCCATGATT+TGG 0.394779 tig0021310:+3098 Msa1390050:five_prime_UTR
AAAATGTGATAAAGTGGATA+TGG 0.394805 tig0021310:+2678 Msa1390050:five_prime_UTR
AATAATCATCAGTCTGATTT+GGG 0.397792 tig0021310:+2895 Msa1390050:five_prime_UTR
GATAGAATTTCAAACTTGTT+GGG 0.398201 tig0021310:-4497 Msa1390050:intergenic
TAGTAGATACGGGAGGAATC+TGG 0.402183 tig0021310:-5807 Msa1390050:intergenic
TTTGATTCTTTGTGTAAATT+GGG 0.404137 tig0021310:+3300 Msa1390050:five_prime_UTR
CCATTCACAACAATAAATTC+AGG 0.406550 tig0021310:+2140 Msa1390050:five_prime_UTR
CCGGTGGTGGGGTTTGGCGG+AGG 0.412336 tig0021310:-1992 Msa1390050:intergenic
TTCAATGAAGTTATTAAAAG+AGG 0.415116 tig0021310:+4251 Msa1390050:five_prime_UTR
ATTGGAGGGTGTTCATGTTA+AGG 0.417463 tig0021310:+2492 Msa1390050:five_prime_UTR
CCTGAATTTATTGTTGTGAA+TGG 0.417679 tig0021310:-2140 Msa1390050:intergenic
TTCTCTTCTCGACACGGAAA+AGG 0.419868 tig0021310:+4092 Msa1390050:five_prime_UTR
TTTGTGTAAATTGGGTAAGA+TGG 0.422308 tig0021310:+3308 Msa1390050:five_prime_UTR
GTGTAGGCATAAACCTCAAT+AGG 0.426007 tig0021310:-2955 Msa1390050:intergenic
GTTTATTCTCCGTTGATTCG+TGG 0.430326 tig0021310:+3075 Msa1390050:five_prime_UTR
ATGGCATAAGTGTGATGGTT+AGG 0.431370 tig0021310:-2742 Msa1390050:intergenic
TCAAAAGATGAAGAATTTGA+AGG 0.433003 tig0021310:-2220 Msa1390050:intergenic
TATTATGCATTGCTTAGGTA+AGG 0.435505 tig0021310:-6279 Msa1390050:intergenic
ACATTATAAGCAACAACATC+AGG 0.436134 tig0021310:-3483 Msa1390050:intergenic
TGCGGCTGAGCTTGAGGCTC+CGG 0.437472 tig0021310:-2011 Msa1390050:intergenic
GACATTTAGAATAGTGTCAT+AGG 0.438373 tig0021310:-6566 Msa1390050:intergenic
TGGTGTGTTGTTCTATGAAA+TGG 0.440423 tig0021310:+2813 Msa1390050:five_prime_UTR
GCTGCATAGCAATACGAATT+CGG 0.440596 tig0021310:-2853 Msa1390050:intergenic
TGACATGCTCCGAGCTCTTA+GGG 0.441929 tig0021310:+2921 Msa1390050:five_prime_UTR
GCCTACACTGCAGTTATTCG+TGG 0.443809 tig0021310:+2970 Msa1390050:five_prime_UTR
TGCTATGCAGCTTATATTGA+GGG 0.446421 tig0021310:+2865 Msa1390050:five_prime_UTR
ATCTTATGTGTAGTAGAGTT+CGG 0.446628 tig0021310:-3588 Msa1390050:intergenic
TTCAACCAAATCAAGAGGCT+TGG 0.449035 tig0021310:+2712 Msa1390050:five_prime_UTR
ATTGTGCCAGACAGAGAATA+TGG 0.449653 tig0021310:+3866 Msa1390050:five_prime_UTR
TCCCTCTGCTCTTCATATCC+TGG 0.450411 tig0021310:-4013 Msa1390050:intergenic
AGAGGCTCATGACCTCTTCC+AGG 0.451592 tig0021310:+3995 Msa1390050:five_prime_UTR
CTAAAGCTTTAACCAAATCA+TGG 0.451778 tig0021310:-3110 Msa1390050:intergenic
AGATAGAATTTCAAACTTGT+TGG 0.452069 tig0021310:-4498 Msa1390050:intergenic
CATTTCCATTGTAGTAGATA+CGG 0.454174 tig0021310:-5818 Msa1390050:intergenic
TCCTAACTTTCAAAATTCGC+TGG 0.458387 tig0021310:-4403 Msa1390050:intergenic
ACCATTATTATGCATTGCTT+AGG 0.460639 tig0021310:-6284 Msa1390050:intergenic
CATACTCTGCTGTCAGAAGT+TGG 0.461845 tig0021310:-6662 Msa1390050:intergenic
AACATGATATAGGCTTTATC+GGG 0.463240 tig0021310:-3432 Msa1390050:intergenic
ATTTAAGGAAGTAAAGCAAT+CGG 0.464388 tig0021310:+3242 Msa1390050:five_prime_UTR
AATCGGGTGTGTTTCTTGAT+GGG 0.464754 tig0021310:+3259 Msa1390050:five_prime_UTR
ACTGTGTAGGTAATTACATC+AGG 0.466512 tig0021310:-4041 Msa1390050:intergenic
CTTCATTGCCTTGCTGAGAT+GGG 0.467742 tig0021310:+3195 Msa1390050:five_prime_UTR
CTGGAACTTGAATAGAAGGT+TGG 0.468115 tig0021310:+2390 Msa1390050:five_prime_UTR
AGTATGATAGTGCAAGAGAA+GGG 0.468388 tig0021310:-2291 Msa1390050:intergenic
CATGTTCCATATTCTCTGTC+TGG 0.468474 tig0021310:-3872 Msa1390050:intergenic
GGAGAATAAACATGACAATC+AGG 0.468761 tig0021310:-3063 Msa1390050:intergenic
ACACATAAGATTATCATTGA+AGG 0.469137 tig0021310:+3600 Msa1390050:five_prime_UTR
ATTGTGTAAGTTACAACGTC+TGG 0.470630 tig0021310:-3936 Msa1390050:intergenic
TGGGGTTTGGCGGAGGCTGA+CGG 0.471123 tig0021310:-1985 Msa1390050:intergenic
TTCTATGAAATGGAAGAAGC+TGG 0.472007 tig0021310:+2823 Msa1390050:five_prime_UTR
TAAAGCTTTAGACTTATATG+AGG 0.473776 tig0021310:+3122 Msa1390050:five_prime_UTR
AACTCTATAATGGTCTGATT+AGG 0.473987 tig0021310:+6543 Msa1390050:three_prime_UTR
GTTGGTTTACATCACTAAAA+CGG 0.474954 tig0021310:-6644 Msa1390050:intergenic
CCATCTCAGCAAGGCAATGA+AGG 0.477850 tig0021310:-3194 Msa1390050:intergenic
AGCTTGAGGCTCCGGTGGTG+GGG 0.483987 tig0021310:-2003 Msa1390050:intergenic
CAGCTGATGCACACAGGTTG+CGG 0.484670 tig0021310:+6436 Msa1390050:CDS
ATTAATGCGGCAAAGAAGCT+TGG 0.489581 tig0021310:+5749 Msa1390050:five_prime_UTR
GAAGGGCGGTGATTTGAAAC+AGG 0.490447 tig0021310:+2786 Msa1390050:five_prime_UTR
GGATGAAGTAGCAGGTATGC+TGG 0.493481 tig0021310:+3329 Msa1390050:five_prime_UTR
ATGACGATTTCTACACAAAC+CGG 0.495546 tig0021310:-3514 Msa1390050:intergenic
TATTCTAACGATGGCAACAT+AGG 0.495871 tig0021310:-2359 Msa1390050:intergenic
TTGCTATGCAGCTTATATTG+AGG 0.500590 tig0021310:+2864 Msa1390050:five_prime_UTR
TTTGGTAAAATGTGATAAAG+TGG 0.502478 tig0021310:+2672 Msa1390050:five_prime_UTR
AGAGGGAGAAGAAAATGAGA+TGG 0.504944 tig0021310:-2076 Msa1390050:intergenic
TCTATCTGGTTGATACCTAA+AGG 0.508665 tig0021310:+4514 Msa1390050:five_prime_UTR
GAGGGAGAAGAAAATGAGAT+GGG 0.510036 tig0021310:-2075 Msa1390050:intergenic
CCTACACAGTTCTACTTGAT+GGG 0.513023 tig0021310:+4054 Msa1390050:five_prime_UTR
ATTTCCATTGTAGTAGATAC+GGG 0.513479 tig0021310:-5817 Msa1390050:intergenic
ATTGAAGGTTTGTGTTCAGA+AGG 0.515170 tig0021310:+3615 Msa1390050:five_prime_UTR
GAAGGAAAGGAAAGTATGTC+CGG 0.515324 tig0021310:+4157 Msa1390050:five_prime_UTR
GGAGCGTAATGCTCCTATTG+AGG 0.518108 tig0021310:+2942 Msa1390050:five_prime_UTR
TAGTCCAAGTAGTAAAGCTT+TGG 0.518582 tig0021310:+5779 Msa1390050:five_prime_UTR
AAGTATGATAGTGCAAGAGA+AGG 0.519579 tig0021310:-2292 Msa1390050:intergenic
GTATAACGAAATGTCTTCCA+AGG 0.521739 tig0021310:+4355 Msa1390050:five_prime_UTR
TATGAGGACATGATTTCAAA+GGG 0.522919 tig0021310:+3138 Msa1390050:five_prime_UTR
CTTCTTGTATAGATATGAAA+GGG 0.527448 tig0021310:+4577 Msa1390050:five_prime_UTR
CAAGGGTGGTGTCATTCCCT+TGG 0.529994 tig0021310:-4372 Msa1390050:intergenic
AATTCGCTGGTTTATATGCA+AGG 0.530043 tig0021310:-4390 Msa1390050:intergenic
TGTTTAAGTTTCAAATTAGG+AGG 0.531364 tig0021310:+2602 Msa1390050:five_prime_UTR
GATGCGTGCGGCTGAGCTTG+AGG 0.531464 tig0021310:-2017 Msa1390050:intergenic
CATTAAGGCGTTGTGTACGA+AGG 0.531615 tig0021310:+2768 Msa1390050:five_prime_UTR
TGCTCTTCATATCCTGGAAG+AGG 0.532449 tig0021310:-4007 Msa1390050:intergenic
CCTCCGCCAAACCCCACCAC+CGG 0.532462 tig0021310:+1992 Msa1390050:five_prime_UTR
TTGCCTTGCTGAGATGGGTG+AGG 0.534465 tig0021310:+3200 Msa1390050:five_prime_UTR
TTGAATTATATGGATAGTCA+AGG 0.538299 tig0021310:+3558 Msa1390050:five_prime_UTR
ACAGTGTAAAGAACAACATC+CGG 0.538754 tig0021310:-4176 Msa1390050:intergenic
ACTGCTTCTTAATCAATACA+TGG 0.539111 tig0021310:+6686 Msa1390050:three_prime_UTR
GACTATCTGGAGAGACATGA+AGG 0.540560 tig0021310:+4139 Msa1390050:five_prime_UTR
GGCTGAGCTTGAGGCTCCGG+TGG 0.540882 tig0021310:-2008 Msa1390050:intergenic
AATGAGAAATTATTATATCA+CGG 0.543061 tig0021310:-2423 Msa1390050:intergenic
CATGTCGTAAAATACTTGCT+GGG 0.543951 tig0021310:-3022 Msa1390050:intergenic
TAGAATGAATTGCTTGCAAG+AGG 0.544812 tig0021310:+3977 Msa1390050:five_prime_UTR
ACACAGGTTGCGGAGAAGAA+TGG 0.548619 tig0021310:+6446 Msa1390050:CDS
TTTAAGGAAGTAAAGCAATC+GGG 0.548701 tig0021310:+3243 Msa1390050:five_prime_UTR
ATATGAGGACATGATTTCAA+AGG 0.549514 tig0021310:+3137 Msa1390050:five_prime_UTR
TTTCGGGCTTGTTAAACAGT+GGG 0.549553 tig0021310:+4309 Msa1390050:five_prime_UTR
TTTGTGAAATGGATTTCTGA+GGG 0.553063 tig0021310:-2196 Msa1390050:intergenic
GGTAAGATGGATGAAGTAGC+AGG 0.553227 tig0021310:+3321 Msa1390050:five_prime_UTR
TCGTCATGTTAGTGAGGCAA+TGG 0.553360 tig0021310:+3530 Msa1390050:five_prime_UTR
GGGTTTGTTAAAGCTTGTGT+TGG 0.553786 tig0021310:+2547 Msa1390050:five_prime_UTR
ATTATGCATTGCTTAGGTAA+GGG 0.556934 tig0021310:-6278 Msa1390050:intergenic
TCCTCCCGTATCTACTACAA+TGG 0.559449 tig0021310:+5813 Msa1390050:exon
GCTTATAATGTACTAGCCGC+CGG 0.562977 tig0021310:+3495 Msa1390050:five_prime_UTR
TAGACATCAAAGCTCAAAAG+AGG 0.563127 tig0021310:+6410 Msa1390050:CDS
CGCTGGTTTATATGCAAGGG+TGG 0.563452 tig0021310:-4386 Msa1390050:intergenic
ATCGGGTGTGTTTCTTGATG+GGG 0.565201 tig0021310:+3260 Msa1390050:five_prime_UTR
ACGAAACAACATACCGGTGG+TGG 0.565858 tig0021310:-2041 Msa1390050:intergenic
CCTACACTGCAGTTATTCGT+GGG 0.566939 tig0021310:+2971 Msa1390050:five_prime_UTR
GATACGGGAGGAATCTGGAC+AGG 0.568206 tig0021310:-5802 Msa1390050:intergenic
AGAAGATTGCGCAAGTGCTG+TGG 0.572254 tig0021310:-2173 Msa1390050:intergenic
TTCTCGACACGGAAAAGGAA+AGG 0.572411 tig0021310:+4097 Msa1390050:five_prime_UTR
GCCGCACGCATCACCACCAC+CGG 0.576303 tig0021310:+2028 Msa1390050:five_prime_UTR
TAAAGCTTTAACCAAATCAT+GGG 0.577527 tig0021310:-3109 Msa1390050:intergenic
ACTTCTTGTATAGATATGAA+AGG 0.578988 tig0021310:+4576 Msa1390050:five_prime_UTR
TAAGAGACGACGGGTCCTGA+TGG 0.579199 tig0021310:+6226 Msa1390050:CDS
AGGCAAGATTGAAGAAGCTG+AGG 0.579642 tig0021310:+3635 Msa1390050:five_prime_UTR
CATTACGCTCCCTAAGAGCT+CGG 0.584926 tig0021310:-2930 Msa1390050:intergenic
CTGGCGTAAATCCTCTCTCA+AGG 0.588144 tig0021310:-3917 Msa1390050:intergenic
TCTGGAGAGACATGAAGGAA+AGG 0.594151 tig0021310:+4144 Msa1390050:five_prime_UTR
AGATAAGCATCAAAATTCAA+AGG 0.595909 tig0021310:+6181 Msa1390050:CDS
CTTGTTTGAGAAACTATTGG+AGG 0.597275 tig0021310:+2477 Msa1390050:five_prime_UTR
ATTCGCTGGTTTATATGCAA+GGG 0.601896 tig0021310:-4389 Msa1390050:intergenic
ACCAGAATGTCATTGTATGT+AGG 0.602736 tig0021310:+4620 Msa1390050:five_prime_UTR
CCCACGAATAACTGCAGTGT+AGG 0.603960 tig0021310:-2971 Msa1390050:intergenic
TGTCGAAATCTATACTGCCA+TGG 0.606530 tig0021310:+3704 Msa1390050:five_prime_UTR
TCCAGGATATGAAGAGCAGA+GGG 0.608560 tig0021310:+4012 Msa1390050:five_prime_UTR
CAAAATTCAAAGGATGCAGA+AGG 0.609992 tig0021310:+6191 Msa1390050:CDS
GCTATGCAGCTTATATTGAG+GGG 0.612193 tig0021310:+2866 Msa1390050:five_prime_UTR
GGTGATTTGAAACAGGCGTA+TGG 0.613769 tig0021310:+2793 Msa1390050:five_prime_UTR
ATTAAGGCGTTGTGTACGAA+GGG 0.619307 tig0021310:+2769 Msa1390050:five_prime_UTR
TTTGGCGGAGGCTGACGGCG+AGG 0.619623 tig0021310:-1980 Msa1390050:intergenic
TCTATGAAATGGAAGAAGCT+GGG 0.619744 tig0021310:+2824 Msa1390050:five_prime_UTR
AGGAAGCTGCAGTTTAGTAG+CGG 0.621339 tig0021310:+4422 Msa1390050:five_prime_UTR
CAGATAGTCGAAACATCATA+CGG 0.625035 tig0021310:-4125 Msa1390050:intergenic
TTACAATATCCACGAATCAA+CGG 0.626803 tig0021310:-3084 Msa1390050:intergenic
GGCAAGATTGAAGAAGCTGA+GGG 0.628892 tig0021310:+3636 Msa1390050:five_prime_UTR
TTCCAGGATATGAAGAGCAG+AGG 0.630591 tig0021310:+4011 Msa1390050:five_prime_UTR
CCCATCAAGTAGAACTGTGT+AGG 0.636114 tig0021310:-4054 Msa1390050:intergenic
TATAACGAAATGTCTTCCAA+GGG 0.638786 tig0021310:+4356 Msa1390050:five_prime_UTR
AATCCTCACCCATCTCAGCA+AGG 0.639977 tig0021310:-3203 Msa1390050:intergenic
TAGAAATCGTCATGTTAGTG+AGG 0.642041 tig0021310:+3524 Msa1390050:five_prime_UTR
AGGCATTTCTCTTCTCGACA+CGG 0.642063 tig0021310:+4086 Msa1390050:five_prime_UTR
TTTCATGAGCTGTCAAAACG+AGG 0.642852 tig0021310:+3774 Msa1390050:five_prime_UTR
CAGACCATTATAGAGTTGCA+TGG 0.643311 tig0021310:-6537 Msa1390050:intergenic
TGATAATGGCATAAGTGTGA+TGG 0.650170 tig0021310:-2747 Msa1390050:intergenic
GAAGAAACGAAACAACATAC+CGG 0.650808 tig0021310:-2047 Msa1390050:intergenic
AGGATGCAGCTGATGCACAC+AGG 0.652895 tig0021310:+6430 Msa1390050:CDS
GTAACAGAGTATTCTAACGA+TGG 0.664811 tig0021310:-2368 Msa1390050:intergenic
AAGGCGTTGTGTACGAAGGG+CGG 0.665032 tig0021310:+2772 Msa1390050:five_prime_UTR
CTGCTTCTTAATCAATACAT+GGG 0.666844 tig0021310:+6687 Msa1390050:three_prime_UTR
TTGTTTGAGAAACTATTGGA+GGG 0.671020 tig0021310:+2478 Msa1390050:five_prime_UTR
CTATGAAATGGAAGAAGCTG+GGG 0.676654 tig0021310:+2825 Msa1390050:five_prime_UTR
TCCATTGTAGTAGATACGGG+AGG 0.678018 tig0021310:-5814 Msa1390050:intergenic
TTCACAATAACCATTAACCA+TGG 0.679993 tig0021310:-3721 Msa1390050:intergenic
CATCATTGCAGATATTAATG+CGG 0.682324 tig0021310:+5736 Msa1390050:five_prime_UTR
TATTGTGAGAGAACCCATGT+TGG 0.687098 tig0021310:-2330 Msa1390050:intergenic
ACCGGTGGTGGTGATGCGTG+CGG 0.688712 tig0021310:-2029 Msa1390050:intergenic
TGAAGTAGCAGGTATGCTGG+AGG 0.701065 tig0021310:+3332 Msa1390050:five_prime_UTR
GAAACGAAACAACATACCGG+TGG 0.710447 tig0021310:-2044 None:intergenic
ACGATTTCTACACAAACCGG+CGG 0.723120 tig0021310:-3511 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAAAATATTATATTGAT+GGG - tig0021310:5896-5915 Msa1390050:intergenic 10.0%
!! AAAGTAAAATATTATATTGA+TGG - tig0021310:5897-5916 Msa1390050:intergenic 10.0%
!! AATGAGAAATTATTATATCA+CGG - tig0021310:2426-2445 Msa1390050:intergenic 15.0%
!!! AATTTTTTGCAAGTTAAATT+TGG + tig0021310:4784-4803 Msa1390050:intron 15.0%
!!! ATGTCTTTTTTTAATTCTTT+TGG + tig0021310:4807-4826 Msa1390050:intron 15.0%
!! TAAATTGTGACAATAAAAAA+TGG - tig0021310:4967-4986 Msa1390050:intergenic 15.0%
!! TAAAAATGATAGAATTAGTT+AGG + tig0021310:5217-5236 Msa1390050:intron 15.0%
!!! TTTCTGTAATTTTTTTGTTA+AGG + tig0021310:5657-5676 Msa1390050:intron 15.0%
!! TCATCTTATAATTCAATATA+AGG - tig0021310:6319-6338 Msa1390050:intergenic 15.0%
!! AGTCATGAATTTCAAATAAT+GGG - tig0021310:2459-2478 Msa1390050:intergenic 20.0%
!! AAGTCATGAATTTCAAATAA+TGG - tig0021310:2460-2479 Msa1390050:intergenic 20.0%
!!! TCATGTTTAAGTTTCAAATT+AGG + tig0021310:2599-2618 Msa1390050:five_prime_UTR 20.0%
!! AAGTTACAAGCAAAAATATT+TGG - tig0021310:2640-2659 Msa1390050:intergenic 20.0%
!! ATTTGATTCTTTGTGTAAAT+TGG + tig0021310:3299-3318 Msa1390050:five_prime_UTR 20.0%
!! TTTGATTCTTTGTGTAAATT+GGG + tig0021310:3300-3319 Msa1390050:five_prime_UTR 20.0%
!!! CATTTTTTTGAACATGATAT+AGG - tig0021310:3445-3464 Msa1390050:intergenic 20.0%
!! CTATATCATGTTCAAAAAAA+TGG + tig0021310:3443-3462 Msa1390050:five_prime_UTR 20.0%
!!! GTTCATATGATTTTTCAATA+AGG - tig0021310:3752-3771 Msa1390050:intergenic 20.0%
!! TTCAATGAAGTTATTAAAAG+AGG + tig0021310:4251-4270 Msa1390050:five_prime_UTR 20.0%
!!! TTTTAATTCTTTTGGATTAC+CGG + tig0021310:4815-4834 Msa1390050:intron 20.0%
!!! TGGGAAATAAAATTAAGTTT+TGG - tig0021310:5124-5143 Msa1390050:intergenic 20.0%
!!! ATGAAAAGAAAGAGTATTTT+GGG - tig0021310:5143-5162 Msa1390050:intergenic 20.0%
!!! AATGAAAAGAAAGAGTATTT+TGG - tig0021310:5144-5163 Msa1390050:intergenic 20.0%
!!! GAATAACAAACTTTTGTTAA+TGG - tig0021310:5707-5726 Msa1390050:intergenic 20.0%
!!! GAGACATTTATTTAGTATTT+TGG + tig0021310:6128-6147 Msa1390050:intron 20.0%
!!! AGAATGAATTTTTGAAGAGA+GGG - tig0021310:2096-2115 Msa1390050:intergenic 25.0%
!! TTTATTGTTGTGAATGGTTT+TGG - tig0021310:2137-2156 Msa1390050:intergenic 25.0%
!!! AATTTGAAGGTTTTGTGAAA+TGG - tig0021310:2210-2229 Msa1390050:intergenic 25.0%
! TCAAAAGATGAAGAATTTGA+AGG - tig0021310:2223-2242 Msa1390050:intergenic 25.0%
!! TGTTTAAGTTTCAAATTAGG+AGG + tig0021310:2602-2621 Msa1390050:five_prime_UTR 25.0%
! TAACTTTCTTATTAACCGTT+TGG + tig0021310:2654-2673 Msa1390050:five_prime_UTR 25.0%
!! CTTTATCACATTTTACCAAA+CGG - tig0021310:2672-2691 Msa1390050:intergenic 25.0%
! TTTGGTAAAATGTGATAAAG+TGG + tig0021310:2672-2691 Msa1390050:five_prime_UTR 25.0%
! AAAATGTGATAAAGTGGATA+TGG + tig0021310:2678-2697 Msa1390050:five_prime_UTR 25.0%
! TAATAATCATCAGTCTGATT+TGG + tig0021310:2894-2913 Msa1390050:five_prime_UTR 25.0%
! AATAATCATCAGTCTGATTT+GGG + tig0021310:2895-2914 Msa1390050:five_prime_UTR 25.0%
!! TAAAGCTTTAACCAAATCAT+GGG - tig0021310:3112-3131 Msa1390050:intergenic 25.0%
!!! TAAAGCTTTAGACTTATATG+AGG + tig0021310:3122-3141 Msa1390050:five_prime_UTR 25.0%
! ATTTAAGGAAGTAAAGCAAT+CGG + tig0021310:3242-3261 Msa1390050:five_prime_UTR 25.0%
! AAGACAGTAACCTTTAATAA+AGG - tig0021310:3403-3422 Msa1390050:intergenic 25.0%
! TATCATGTTCAAAAAAATGG+AGG + tig0021310:3446-3465 Msa1390050:five_prime_UTR 25.0%
! TTCAAAAAAATGGAGGAAAA+CGG + tig0021310:3453-3472 Msa1390050:five_prime_UTR 25.0%
!! AATGGAGCTTTTGAATTATA+TGG + tig0021310:3548-3567 Msa1390050:five_prime_UTR 25.0%
! TTGAATTATATGGATAGTCA+AGG + tig0021310:3558-3577 Msa1390050:five_prime_UTR 25.0%
! ACACATAAGATTATCATTGA+AGG + tig0021310:3600-3619 Msa1390050:five_prime_UTR 25.0%
!!! AACATACACTGCTTTATTTT+CGG + tig0021310:4292-4311 Msa1390050:five_prime_UTR 25.0%
!! GATAGAATTTCAAACTTGTT+GGG - tig0021310:4500-4519 Msa1390050:intergenic 25.0%
! AGATAGAATTTCAAACTTGT+TGG - tig0021310:4501-4520 Msa1390050:intergenic 25.0%
!! AACAAGTTTGAAATTCTATC+TGG + tig0021310:4500-4519 Msa1390050:five_prime_UTR 25.0%
! ACTTCTTGTATAGATATGAA+AGG + tig0021310:4576-4595 Msa1390050:five_prime_UTR 25.0%
! CTTCTTGTATAGATATGAAA+GGG + tig0021310:4577-4596 Msa1390050:five_prime_UTR 25.0%
! TGTAAGTAGTATAAATGAGA+CGG + tig0021310:4690-4709 Msa1390050:intron 25.0%
!! TTTAATTCTTTTGGATTACC+GGG + tig0021310:4816-4835 Msa1390050:intron 25.0%
!!! ACTACTTTATTTTGTATACC+CGG - tig0021310:4837-4856 Msa1390050:intergenic 25.0%
!!! AATTTCAATGTTTTGTTAGC+AGG - tig0021310:4867-4886 Msa1390050:intergenic 25.0%
! CACAATTTATGATTTACACT+AGG + tig0021310:4978-4997 Msa1390050:intron 25.0%
! CAATTAAGCAAAATGATAAC+AGG - tig0021310:5007-5026 Msa1390050:intergenic 25.0%
! ATGAGAACTTATTTCATTGA+AGG + tig0021310:5173-5192 Msa1390050:intron 25.0%
! TGAGAACTTATTTCATTGAA+GGG + tig0021310:5174-5193 Msa1390050:intron 25.0%
! CAAAAATAAGACTTATCAGA+TGG - tig0021310:5261-5280 Msa1390050:intergenic 25.0%
!! ATCCTTTTCAATTACTACTT+TGG - tig0021310:5298-5317 Msa1390050:intergenic 25.0%
! ATTTGCTCTTACTGAAATTT+AGG + tig0021310:5316-5335 Msa1390050:intron 25.0%
!! AACAAACTTTTGTTAATGGA+AGG - tig0021310:5703-5722 Msa1390050:intergenic 25.0%
!!! ACAAAAGTTTGTTATTCAGA+TGG + tig0021310:5710-5729 Msa1390050:intron 25.0%
! ATATTGATGGGAATAAAAGA+GGG - tig0021310:5884-5903 Msa1390050:intergenic 25.0%
! TATATTGATGGGAATAAAAG+AGG - tig0021310:5885-5904 Msa1390050:intergenic 25.0%
! AAATGTGGTAATCATATTCT+TGG - tig0021310:6060-6079 Msa1390050:intergenic 25.0%
! AGATAAGCATCAAAATTCAA+AGG + tig0021310:6181-6200 Msa1390050:CDS 25.0%
! TGCATAATAATGGTAACATT+AGG + tig0021310:6293-6312 Msa1390050:intron 25.0%
!! GATGAGACTAATTACATTTT+TGG + tig0021310:6334-6353 Msa1390050:intron 25.0%
!! GAGAATGAATTTTTGAAGAG+AGG - tig0021310:2097-2116 Msa1390050:intergenic 30.0%
!!! TTTGGTTTTGGTTTTGGTTT+TGG - tig0021310:2119-2138 Msa1390050:intergenic 30.0%
!!! AATGGTTTTGGTTTTGGTTT+TGG - tig0021310:2125-2144 Msa1390050:intergenic 30.0%
CCTGAATTTATTGTTGTGAA+TGG - tig0021310:2143-2162 Msa1390050:intergenic 30.0%
CCATTCACAACAATAAATTC+AGG + tig0021310:2140-2159 Msa1390050:five_prime_UTR 30.0%
! TTTGTGAAATGGATTTCTGA+GGG - tig0021310:2199-2218 Msa1390050:intergenic 30.0%
!! TTTTGTGAAATGGATTTCTG+AGG - tig0021310:2200-2219 Msa1390050:intergenic 30.0%
! TTCGATAAAGGTGAAGTTTT+TGG - tig0021310:2267-2286 Msa1390050:intergenic 30.0%
!! TGACTTGTTTGAGAAACTAT+TGG + tig0021310:2474-2493 Msa1390050:five_prime_UTR 30.0%
TTGTTTGAGAAACTATTGGA+GGG + tig0021310:2478-2497 Msa1390050:five_prime_UTR 30.0%
AAGTTTCAAATTAGGAGGTT+TGG + tig0021310:2607-2626 Msa1390050:five_prime_UTR 30.0%
AGTTTCAAATTAGGAGGTTT+GGG + tig0021310:2608-2627 Msa1390050:five_prime_UTR 30.0%
! AGATTTTCAACCAAATCAAG+AGG + tig0021310:2707-2726 Msa1390050:five_prime_UTR 30.0%
CACTTATGCCATTATCATTA+AGG + tig0021310:2753-2772 Msa1390050:five_prime_UTR 30.0%
! AAGTATTTTACGACATGGAA+TGG + tig0021310:3028-3047 Msa1390050:five_prime_UTR 30.0%
TTACAATATCCACGAATCAA+CGG - tig0021310:3087-3106 Msa1390050:intergenic 30.0%
ATATTGTAAGACCCATGATT+TGG + tig0021310:3098-3117 Msa1390050:five_prime_UTR 30.0%
! CTAAAGCTTTAACCAAATCA+TGG - tig0021310:3113-3132 Msa1390050:intergenic 30.0%
ATATGAGGACATGATTTCAA+AGG + tig0021310:3137-3156 Msa1390050:five_prime_UTR 30.0%
TATGAGGACATGATTTCAAA+GGG + tig0021310:3138-3157 Msa1390050:five_prime_UTR 30.0%
GAGAGTTGTAGATACATTTA+AGG + tig0021310:3227-3246 Msa1390050:five_prime_UTR 30.0%
TTTAAGGAAGTAAAGCAATC+GGG + tig0021310:3243-3262 Msa1390050:five_prime_UTR 30.0%
TTTGTGTAAATTGGGTAAGA+TGG + tig0021310:3308-3327 Msa1390050:five_prime_UTR 30.0%
CACTACACAACCTTTATTAA+AGG + tig0021310:3390-3409 Msa1390050:five_prime_UTR 30.0%
ATTAAAGGTTACTGTCTTCA+AGG + tig0021310:3405-3424 Msa1390050:five_prime_UTR 30.0%
! AACATGATATAGGCTTTATC+GGG - tig0021310:3435-3454 Msa1390050:intergenic 30.0%
! GAACATGATATAGGCTTTAT+CGG - tig0021310:3436-3455 Msa1390050:intergenic 30.0%
ACATTATAAGCAACAACATC+AGG - tig0021310:3486-3505 Msa1390050:intergenic 30.0%
ATCTTATGTGTAGTAGAGTT+CGG - tig0021310:3591-3610 Msa1390050:intergenic 30.0%
TTCACAATAACCATTAACCA+TGG - tig0021310:3724-3743 Msa1390050:intergenic 30.0%
! TTTGCTAAGTTGCTTTAAAC+AGG - tig0021310:3820-3839 Msa1390050:intergenic 30.0%
!!! TTTGATTTTTTCCTTGAGAG+AGG + tig0021310:3906-3925 Msa1390050:five_prime_UTR 30.0%
!!! CTTTACACTGTTTTGATTGA+TGG + tig0021310:4188-4207 Msa1390050:five_prime_UTR 30.0%
! TTTGATTGATGGACACATAA+AGG + tig0021310:4199-4218 Msa1390050:five_prime_UTR 30.0%
!!! ACATACACTGCTTTATTTTC+GGG + tig0021310:4293-4312 Msa1390050:five_prime_UTR 30.0%
TATAACGAAATGTCTTCCAA+GGG + tig0021310:4356-4375 Msa1390050:five_prime_UTR 30.0%
! TAAATGAGACGGATTCAAAA+AGG + tig0021310:4701-4720 Msa1390050:intron 30.0%
! AAGCTCTAATGCTTAATTAC+AGG + tig0021310:4941-4960 Msa1390050:intron 30.0%
GACCAAAGTAGTAATTGAAA+AGG + tig0021310:5293-5312 Msa1390050:intron 30.0%
! ATTATCTCAAGCTAACTTGT+CGG + tig0021310:5350-5369 Msa1390050:intron 30.0%
!!! GCTTTTTTGAGTTTGCAAAT+AGG + tig0021310:5372-5391 Msa1390050:intron 30.0%
ATTTAGTTGCATAGCTGATT+TGG + tig0021310:5415-5434 Msa1390050:intron 30.0%
GAATGCAGTTCAATTAACAT+CGG + tig0021310:5462-5481 Msa1390050:intron 30.0%
!!! GTGATTAGTCAGTTTTTTGT+CGG + tig0021310:5551-5570 Msa1390050:intron 30.0%
AAAAATCACTTAGCTATGGA+AGG - tig0021310:5631-5650 Msa1390050:intergenic 30.0%
CTTGAAAAATCACTTAGCTA+TGG - tig0021310:5635-5654 Msa1390050:intergenic 30.0%
! CTTTTGTTAATGGAAGGTAA+GGG - tig0021310:5697-5716 Msa1390050:intergenic 30.0%
! ACTTTTGTTAATGGAAGGTA+AGG - tig0021310:5698-5717 Msa1390050:intergenic 30.0%
CATCATTGCAGATATTAATG+CGG + tig0021310:5736-5755 Msa1390050:five_prime_UTR 30.0%
ATTTCCATTGTAGTAGATAC+GGG - tig0021310:5820-5839 Msa1390050:intergenic 30.0%
CATTTCCATTGTAGTAGATA+CGG - tig0021310:5821-5840 Msa1390050:intergenic 30.0%
! TACAATGGAAATGCTTTTGA+TGG + tig0021310:5828-5847 Msa1390050:exon 30.0%
TATTGATGGGAATAAAAGAG+GGG - tig0021310:5883-5902 Msa1390050:intergenic 30.0%
TGTATCTACATATCACTGTT+AGG + tig0021310:6001-6020 Msa1390050:intron 30.0%
GTATCTACATATCACTGTTA+GGG + tig0021310:6002-6021 Msa1390050:intron 30.0%
TGCAGTTAAGACTTAAAATG+TGG - tig0021310:6075-6094 Msa1390050:intergenic 30.0%
TAAATGTCTCTTCTTGTTCT+AGG - tig0021310:6118-6137 Msa1390050:intergenic 30.0%
ATTATGCATTGCTTAGGTAA+GGG - tig0021310:6281-6300 Msa1390050:intergenic 30.0%
TATTATGCATTGCTTAGGTA+AGG - tig0021310:6282-6301 Msa1390050:intergenic 30.0%
ACCTAAGCAATGCATAATAA+TGG + tig0021310:6283-6302 Msa1390050:CDS 30.0%
ACCATTATTATGCATTGCTT+AGG - tig0021310:6287-6306 Msa1390050:intergenic 30.0%
AACTCTATAATGGTCTGATT+AGG + tig0021310:6543-6562 Msa1390050:three_prime_UTR 30.0%
! GACATTTAGAATAGTGTCAT+AGG - tig0021310:6569-6588 Msa1390050:intergenic 30.0%
! GTTGGTTTACATCACTAAAA+CGG - tig0021310:6647-6666 Msa1390050:intergenic 30.0%
ACTGCTTCTTAATCAATACA+TGG + tig0021310:6686-6705 Msa1390050:three_prime_UTR 30.0%
CTGCTTCTTAATCAATACAT+GGG + tig0021310:6687-6706 Msa1390050:three_prime_UTR 30.0%
GAAGAAACGAAACAACATAC+CGG - tig0021310:2050-2069 Msa1390050:intergenic 35.0%
!!! GTTGTGAATGGTTTTGGTTT+TGG - tig0021310:2131-2150 Msa1390050:intergenic 35.0%
!! GTGAAGTTTTTGGAGGATTT+GGG - tig0021310:2257-2276 Msa1390050:intergenic 35.0%
!! GATAAAGGTGAAGTTTTTGG+AGG - tig0021310:2264-2283 Msa1390050:intergenic 35.0%
! AGTATGATAGTGCAAGAGAA+GGG - tig0021310:2294-2313 Msa1390050:intergenic 35.0%
! AAGTATGATAGTGCAAGAGA+AGG - tig0021310:2295-2314 Msa1390050:intergenic 35.0%
TCTGAACTCAAAAACCAACA+TGG + tig0021310:2316-2335 Msa1390050:five_prime_UTR 35.0%
CTGAACTCAAAAACCAACAT+GGG + tig0021310:2317-2336 Msa1390050:five_prime_UTR 35.0%
TATTCTAACGATGGCAACAT+AGG - tig0021310:2362-2381 Msa1390050:intergenic 35.0%
! GTAACAGAGTATTCTAACGA+TGG - tig0021310:2371-2390 Msa1390050:intergenic 35.0%
TCGTTAGAATACTCTGTTAC+TGG + tig0021310:2371-2390 Msa1390050:five_prime_UTR 35.0%
GTTACTGGAACTTGAATAGA+AGG + tig0021310:2386-2405 Msa1390050:five_prime_UTR 35.0%
CTTGTTTGAGAAACTATTGG+AGG + tig0021310:2477-2496 Msa1390050:five_prime_UTR 35.0%
! TACTTGCTTAGAGCTTTTGA+TGG + tig0021310:2526-2545 Msa1390050:five_prime_UTR 35.0%
! ACTTGCTTAGAGCTTTTGAT+GGG + tig0021310:2527-2546 Msa1390050:five_prime_UTR 35.0%
!! TGATAATGGCATAAGTGTGA+TGG - tig0021310:2750-2769 Msa1390050:intergenic 35.0%
ACACAACGCCTTAATGATAA+TGG - tig0021310:2764-2783 Msa1390050:intergenic 35.0%
! TGGTGTGTTGTTCTATGAAA+TGG + tig0021310:2813-2832 Msa1390050:five_prime_UTR 35.0%
TTCTATGAAATGGAAGAAGC+TGG + tig0021310:2823-2842 Msa1390050:five_prime_UTR 35.0%
TCTATGAAATGGAAGAAGCT+GGG + tig0021310:2824-2843 Msa1390050:five_prime_UTR 35.0%
TTGCTATGCAGCTTATATTG+AGG + tig0021310:2864-2883 Msa1390050:five_prime_UTR 35.0%
TGCTATGCAGCTTATATTGA+GGG + tig0021310:2865-2884 Msa1390050:five_prime_UTR 35.0%
!! TCGTGGGTTTTGTAATGAAA+TGG + tig0021310:2987-3006 Msa1390050:five_prime_UTR 35.0%
CATGTCGTAAAATACTTGCT+GGG - tig0021310:3025-3044 Msa1390050:intergenic 35.0%
GGAGAATAAACATGACAATC+AGG - tig0021310:3066-3085 Msa1390050:intergenic 35.0%
ATGACGATTTCTACACAAAC+CGG - tig0021310:3517-3536 Msa1390050:intergenic 35.0%
TAGAAATCGTCATGTTAGTG+AGG + tig0021310:3524-3543 Msa1390050:five_prime_UTR 35.0%
ATTGAAGGTTTGTGTTCAGA+AGG + tig0021310:3615-3634 Msa1390050:five_prime_UTR 35.0%
ATCTATACTGCCATGGTTAA+TGG + tig0021310:3711-3730 Msa1390050:five_prime_UTR 35.0%
ATTGTGTAAGTTACAACGTC+TGG - tig0021310:3939-3958 Msa1390050:intergenic 35.0%
TAGAATGAATTGCTTGCAAG+AGG + tig0021310:3977-3996 Msa1390050:five_prime_UTR 35.0%
ACTGTGTAGGTAATTACATC+AGG - tig0021310:4044-4063 Msa1390050:intergenic 35.0%
! TACTTGATGGGCAATCAAAA+AGG + tig0021310:4066-4085 Msa1390050:five_prime_UTR 35.0%
CAGATAGTCGAAACATCATA+CGG - tig0021310:4128-4147 Msa1390050:intergenic 35.0%
ACAGTGTAAAGAACAACATC+CGG - tig0021310:4179-4198 Msa1390050:intergenic 35.0%
GCAGTGTATGTTACATTATC+TGG - tig0021310:4284-4303 Msa1390050:intergenic 35.0%
GTATAACGAAATGTCTTCCA+AGG + tig0021310:4355-4374 Msa1390050:five_prime_UTR 35.0%
!! ATTCGCTGGTTTATATGCAA+GGG - tig0021310:4392-4411 Msa1390050:intergenic 35.0%
!! AATTCGCTGGTTTATATGCA+AGG - tig0021310:4393-4412 Msa1390050:intergenic 35.0%
!! ACCAGCGAATTTTGAAAGTT+AGG + tig0021310:4402-4421 Msa1390050:five_prime_UTR 35.0%
TCCTAACTTTCAAAATTCGC+TGG - tig0021310:4406-4425 Msa1390050:intergenic 35.0%
!!! AGTGAATCAGTTTTGACTGT+TGG + tig0021310:4461-4480 Msa1390050:five_prime_UTR 35.0%
! TCTATCTGGTTGATACCTAA+AGG + tig0021310:4514-4533 Msa1390050:five_prime_UTR 35.0%
TGTGATTATGCTTCACCTTT+AGG - tig0021310:4532-4551 Msa1390050:intergenic 35.0%
ACCAGAATGTCATTGTATGT+AGG + tig0021310:4620-4639 Msa1390050:five_prime_UTR 35.0%
ACCTACATACAATGACATTC+TGG - tig0021310:4624-4643 Msa1390050:intergenic 35.0%
TGCTTAATTGATACTCCATC+TGG + tig0021310:5017-5036 Msa1390050:intron 35.0%
GCTTAATTGATACTCCATCT+GGG + tig0021310:5018-5037 Msa1390050:intron 35.0%
CTACTCTTAATATGTGTGTG+TGG - tig0021310:5069-5088 Msa1390050:intergenic 35.0%
CACACACATATTAAGAGTAG+TGG + tig0021310:5069-5088 Msa1390050:intron 35.0%
ATTGAACTGCATTCAATGCT+TGG - tig0021310:5456-5475 Msa1390050:intergenic 35.0%
ACTGACTAATCACTTAGCAA+CGG - tig0021310:5544-5563 Msa1390050:intergenic 35.0%
AGCCTCTATTCTTGCTAAAT+TGG + tig0021310:5589-5608 Msa1390050:intron 35.0%
GCCTCTATTCTTGCTAAATT+GGG + tig0021310:5590-5609 Msa1390050:intron 35.0%
TCCCAATTTAGCAAGAATAG+AGG - tig0021310:5594-5613 Msa1390050:intergenic 35.0%
AAGGTAAGGGAATGAAAGAA+AGG - tig0021310:5684-5703 Msa1390050:intergenic 35.0%
TAGTCCAAGTAGTAAAGCTT+TGG + tig0021310:5779-5798 Msa1390050:five_prime_UTR 35.0%
!! AATGCTTTTGATGGATGCTA+AGG + tig0021310:5837-5856 Msa1390050:CDS 35.0%
!! ATCACTGTTAGGGTTGTTTT+CGG + tig0021310:6012-6031 Msa1390050:intron 35.0%
CAAAATTCAAAGGATGCAGA+AGG + tig0021310:6191-6210 Msa1390050:CDS 35.0%
TAGACATCAAAGCTCAAAAG+AGG + tig0021310:6410-6429 Msa1390050:CDS 35.0%
TGTGTTGTGCTTACAGTTTA+AGG + tig0021310:6483-6502 Msa1390050:three_prime_UTR 35.0%
GAGGGAGAAGAAAATGAGAT+GGG - tig0021310:2078-2097 Msa1390050:intergenic 40.0%
AGAGGGAGAAGAAAATGAGA+TGG - tig0021310:2079-2098 Msa1390050:intergenic 40.0%
!! AAGTTTTTGGAGGATTTGGG+AGG - tig0021310:2254-2273 Msa1390050:intergenic 40.0%
!! GGTGAAGTTTTTGGAGGATT+TGG - tig0021310:2258-2277 Msa1390050:intergenic 40.0%
! GAGAAGGGTTGTTTCGATAA+AGG - tig0021310:2279-2298 Msa1390050:intergenic 40.0%
TATTGTGAGAGAACCCATGT+TGG - tig0021310:2333-2352 Msa1390050:intergenic 40.0%
CTGGAACTTGAATAGAAGGT+TGG + tig0021310:2390-2409 Msa1390050:five_prime_UTR 40.0%
!! ATTGGAGGGTGTTCATGTTA+AGG + tig0021310:2492-2511 Msa1390050:five_prime_UTR 40.0%
!! GGGTTTGTTAAAGCTTGTGT+TGG + tig0021310:2547-2566 Msa1390050:five_prime_UTR 40.0%
TTCAACCAAATCAAGAGGCT+TGG + tig0021310:2712-2731 Msa1390050:five_prime_UTR 40.0%
ACAAACCAAGCCTCTTGATT+TGG - tig0021310:2720-2739 Msa1390050:intergenic 40.0%
ATGGCATAAGTGTGATGGTT+AGG - tig0021310:2745-2764 Msa1390050:intergenic 40.0%
!! ATTAAGGCGTTGTGTACGAA+GGG + tig0021310:2769-2788 Msa1390050:five_prime_UTR 40.0%
CTATGAAATGGAAGAAGCTG+GGG + tig0021310:2825-2844 Msa1390050:five_prime_UTR 40.0%
GCTGCATAGCAATACGAATT+CGG - tig0021310:2856-2875 Msa1390050:intergenic 40.0%
GCTATGCAGCTTATATTGAG+GGG + tig0021310:2866-2885 Msa1390050:five_prime_UTR 40.0%
GTGTAGGCATAAACCTCAAT+AGG - tig0021310:2958-2977 Msa1390050:intergenic 40.0%
CCATGTCGTAAAATACTTGC+TGG - tig0021310:3026-3045 Msa1390050:intergenic 40.0%
! CCAGCAAGTATTTTACGACA+TGG + tig0021310:3023-3042 Msa1390050:five_prime_UTR 40.0%
!! GTTTATTCTCCGTTGATTCG+TGG + tig0021310:3075-3094 Msa1390050:five_prime_UTR 40.0%
AATCGGGTGTGTTTCTTGAT+GGG + tig0021310:3259-3278 Msa1390050:five_prime_UTR 40.0%
TGTCGAAATCTATACTGCCA+TGG + tig0021310:3704-3723 Msa1390050:five_prime_UTR 40.0%
TTTCATGAGCTGTCAAAACG+AGG + tig0021310:3774-3793 Msa1390050:five_prime_UTR 40.0%
ATTGTGCCAGACAGAGAATA+TGG + tig0021310:3866-3885 Msa1390050:five_prime_UTR 40.0%
CATGTTCCATATTCTCTGTC+TGG - tig0021310:3875-3894 Msa1390050:intergenic 40.0%
ACCTACACAGTTCTACTTGA+TGG + tig0021310:4053-4072 Msa1390050:five_prime_UTR 40.0%
CCTACACAGTTCTACTTGAT+GGG + tig0021310:4054-4073 Msa1390050:five_prime_UTR 40.0%
CGTATGATGTTTCGACTATC+TGG + tig0021310:4126-4145 Msa1390050:five_prime_UTR 40.0%
! GAAGGAAAGGAAAGTATGTC+CGG + tig0021310:4157-4176 Msa1390050:five_prime_UTR 40.0%
!!! TTTTCGGGCTTGTTAAACAG+TGG + tig0021310:4308-4327 Msa1390050:five_prime_UTR 40.0%
!! TTTCGGGCTTGTTAAACAGT+GGG + tig0021310:4309-4328 Msa1390050:five_prime_UTR 40.0%
!!! CAGTTTTGACTGTTGGTTCT+TGG + tig0021310:4468-4487 Msa1390050:five_prime_UTR 40.0%
AAGCATAATCACACGTGCTT+TGG + tig0021310:4539-4558 Msa1390050:five_prime_UTR 40.0%
AGCATAATCACACGTGCTTT+GGG + tig0021310:4540-4559 Msa1390050:five_prime_UTR 40.0%
TGCTAATAACTGAACCCAGA+TGG - tig0021310:5035-5054 Msa1390050:intergenic 40.0%
ATTAATGCGGCAAAGAAGCT+TGG + tig0021310:5749-5768 Msa1390050:five_prime_UTR 40.0%
! TACTCGCATGTTTTTCCATC+AGG - tig0021310:6244-6263 Msa1390050:intergenic 40.0%
TGATGGAAAAACATGCGAGT+AGG + tig0021310:6243-6262 Msa1390050:CDS 40.0%
TCACGATCTTGAAACAGCTA+TGG + tig0021310:6386-6405 Msa1390050:intron 40.0%
CAGACCATTATAGAGTTGCA+TGG - tig0021310:6540-6559 Msa1390050:intergenic 40.0%
GAAACGAAACAACATACCGG+TGG - tig0021310:2047-2066 Msa1390050:intergenic 45.0%
!! CATTAAGGCGTTGTGTACGA+AGG + tig0021310:2768-2787 Msa1390050:five_prime_UTR 45.0%
! GGTGATTTGAAACAGGCGTA+TGG + tig0021310:2793-2812 Msa1390050:five_prime_UTR 45.0%
CCTACACTGCAGTTATTCGT+GGG + tig0021310:2971-2990 Msa1390050:five_prime_UTR 45.0%
CTTCATTGCCTTGCTGAGAT+GGG + tig0021310:3195-3214 Msa1390050:five_prime_UTR 45.0%
CAATCGGGTGTGTTTCTTGA+TGG + tig0021310:3258-3277 Msa1390050:five_prime_UTR 45.0%
ATCGGGTGTGTTTCTTGATG+GGG + tig0021310:3260-3279 Msa1390050:five_prime_UTR 45.0%
GGTAAGATGGATGAAGTAGC+AGG + tig0021310:3321-3340 Msa1390050:five_prime_UTR 45.0%
GCTTATAATGTACTAGCCGC+CGG + tig0021310:3495-3514 Msa1390050:five_prime_UTR 45.0%
ACGATTTCTACACAAACCGG+CGG - tig0021310:3514-3533 Msa1390050:intergenic 45.0%
TCGTCATGTTAGTGAGGCAA+TGG + tig0021310:3530-3549 Msa1390050:five_prime_UTR 45.0%
AGGCAAGATTGAAGAAGCTG+AGG + tig0021310:3635-3654 Msa1390050:five_prime_UTR 45.0%
GGCAAGATTGAAGAAGCTGA+GGG + tig0021310:3636-3655 Msa1390050:five_prime_UTR 45.0%
TGCTCTTCATATCCTGGAAG+AGG - tig0021310:4010-4029 Msa1390050:intergenic 45.0%
TTCCAGGATATGAAGAGCAG+AGG + tig0021310:4011-4030 Msa1390050:five_prime_UTR 45.0%
TCCAGGATATGAAGAGCAGA+GGG + tig0021310:4012-4031 Msa1390050:five_prime_UTR 45.0%
CCCATCAAGTAGAACTGTGT+AGG - tig0021310:4057-4076 Msa1390050:intergenic 45.0%
AGGCATTTCTCTTCTCGACA+CGG + tig0021310:4086-4105 Msa1390050:five_prime_UTR 45.0%
TTCTCTTCTCGACACGGAAA+AGG + tig0021310:4092-4111 Msa1390050:five_prime_UTR 45.0%
TTCTCGACACGGAAAAGGAA+AGG + tig0021310:4097-4116 Msa1390050:five_prime_UTR 45.0%
GACTATCTGGAGAGACATGA+AGG + tig0021310:4139-4158 Msa1390050:five_prime_UTR 45.0%
TCTGGAGAGACATGAAGGAA+AGG + tig0021310:4144-4163 Msa1390050:five_prime_UTR 45.0%
AGGAAGCTGCAGTTTAGTAG+CGG + tig0021310:4422-4441 Msa1390050:five_prime_UTR 45.0%
CAGGCCAAAGCTTTACTACT+TGG - tig0021310:5786-5805 Msa1390050:intergenic 45.0%
TAGTAGATACGGGAGGAATC+TGG - tig0021310:5810-5829 Msa1390050:intergenic 45.0%
TCCTCCCGTATCTACTACAA+TGG + tig0021310:5813-5832 Msa1390050:exon 45.0%
TCCATTGTAGTAGATACGGG+AGG - tig0021310:5817-5836 Msa1390050:intergenic 45.0%
TACTTGCGTCAGTGTCATGT+CGG - tig0021310:5948-5967 Msa1390050:intergenic 45.0%
!!! CTGCACGTTTTAAGAGACGA+CGG + tig0021310:6216-6235 Msa1390050:CDS 45.0%
!!! TGCACGTTTTAAGAGACGAC+GGG + tig0021310:6217-6236 Msa1390050:CDS 45.0%
GCTGCCATGCAACTCTATAA+TGG + tig0021310:6533-6552 Msa1390050:three_prime_UTR 45.0%
CATACTCTGCTGTCAGAAGT+TGG - tig0021310:6665-6684 Msa1390050:intergenic 45.0%
!! TAATATTAAACATAATTTAT+AGG - tig0021310:5515-5534 Msa1390050:intergenic 5.0%
ACGAAACAACATACCGGTGG+TGG - tig0021310:2044-2063 Msa1390050:intergenic 50.0%
! AGAAGATTGCGCAAGTGCTG+TGG - tig0021310:2176-2195 Msa1390050:intergenic 50.0%
! GAAGGGCGGTGATTTGAAAC+AGG + tig0021310:2786-2805 Msa1390050:five_prime_UTR 50.0%
ATGACATGCTCCGAGCTCTT+AGG + tig0021310:2920-2939 Msa1390050:five_prime_UTR 50.0%
TGACATGCTCCGAGCTCTTA+GGG + tig0021310:2921-2940 Msa1390050:five_prime_UTR 50.0%
CATTACGCTCCCTAAGAGCT+CGG - tig0021310:2933-2952 Msa1390050:intergenic 50.0%
GGAGCGTAATGCTCCTATTG+AGG + tig0021310:2942-2961 Msa1390050:five_prime_UTR 50.0%
GCCTACACTGCAGTTATTCG+TGG + tig0021310:2970-2989 Msa1390050:five_prime_UTR 50.0%
CCCACGAATAACTGCAGTGT+AGG - tig0021310:2974-2993 Msa1390050:intergenic 50.0%
CCATCTCAGCAAGGCAATGA+AGG - tig0021310:3197-3216 Msa1390050:intergenic 50.0%
CCTTCATTGCCTTGCTGAGA+TGG + tig0021310:3194-3213 Msa1390050:five_prime_UTR 50.0%
AATCCTCACCCATCTCAGCA+AGG - tig0021310:3206-3225 Msa1390050:intergenic 50.0%
GGATGAAGTAGCAGGTATGC+TGG + tig0021310:3329-3348 Msa1390050:five_prime_UTR 50.0%
TGAAGTAGCAGGTATGCTGG+AGG + tig0021310:3332-3351 Msa1390050:five_prime_UTR 50.0%
CTGGCGTAAATCCTCTCTCA+AGG - tig0021310:3920-3939 Msa1390050:intergenic 50.0%
TCCCTCTGCTCTTCATATCC+TGG - tig0021310:4016-4035 Msa1390050:intergenic 50.0%
!! CGCTGGTTTATATGCAAGGG+TGG - tig0021310:4389-4408 Msa1390050:intergenic 50.0%
ACACAGGTTGCGGAGAAGAA+TGG + tig0021310:6446-6465 Msa1390050:CDS 50.0%
!! AAGGCGTTGTGTACGAAGGG+CGG + tig0021310:2772-2791 Msa1390050:five_prime_UTR 55.0%
TTGCCTTGCTGAGATGGGTG+AGG + tig0021310:3200-3219 Msa1390050:five_prime_UTR 55.0%
AGAGGCTCATGACCTCTTCC+AGG + tig0021310:3995-4014 Msa1390050:five_prime_UTR 55.0%
!! CAAGGGTGGTGTCATTCCCT+TGG - tig0021310:4375-4394 Msa1390050:intergenic 55.0%
GATACGGGAGGAATCTGGAC+AGG - tig0021310:5805-5824 Msa1390050:intergenic 55.0%
TAAGAGACGACGGGTCCTGA+TGG + tig0021310:6226-6245 Msa1390050:CDS 55.0%
AGGATGCAGCTGATGCACAC+AGG + tig0021310:6430-6449 Msa1390050:CDS 55.0%
CAGCTGATGCACACAGGTTG+CGG + tig0021310:6436-6455 Msa1390050:CDS 55.0%
TGGGGTTTGGCGGAGGCTGA+CGG - tig0021310:1988-2007 Msa0017350:intergenic 65.0%
AGCTTGAGGCTCCGGTGGTG+GGG - tig0021310:2006-2025 Msa1390050:intergenic 65.0%
GAGCTTGAGGCTCCGGTGGT+GGG - tig0021310:2007-2026 Msa1390050:intergenic 65.0%
TGAGCTTGAGGCTCCGGTGG+TGG - tig0021310:2008-2027 Msa1390050:intergenic 65.0%
TGCGGCTGAGCTTGAGGCTC+CGG - tig0021310:2014-2033 Msa1390050:intergenic 65.0%
GATGCGTGCGGCTGAGCTTG+AGG - tig0021310:2020-2039 Msa1390050:intergenic 65.0%
! ACCGGTGGTGGTGATGCGTG+CGG - tig0021310:2032-2051 Msa1390050:intergenic 65.0%
TTTGGCGGAGGCTGACGGCG+AGG - tig0021310:1983-2002 Msa0017350:intergenic 70.0%
CCTCCGCCAAACCCCACCAC+CGG + tig0021310:1992-2011 Msa1390050:five_prime_UTR 70.0%
!! GCTCCGGTGGTGGGGTTTGG+CGG - tig0021310:1998-2017 Msa1390050:intergenic 70.0%
!! GAGGCTCCGGTGGTGGGGTT+TGG - tig0021310:2001-2020 Msa1390050:intergenic 70.0%
GGCTGAGCTTGAGGCTCCGG+TGG - tig0021310:2011-2030 Msa1390050:intergenic 70.0%
GCCGCACGCATCACCACCAC+CGG + tig0021310:2028-2047 Msa1390050:five_prime_UTR 70.0%
!! CCGGTGGTGGGGTTTGGCGG+AGG - tig0021310:1995-2014 Msa0017350:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0021310 gene 1921 6804 1921 ID=Msa1390050;Name=Msa1390050
tig0021310 mRNA 1921 6804 1921 ID=Msa1390050-mRNA-1;Parent=Msa1390050;Name=Msa1390050-mRNA-1;_AED=0.04;_eAED=0.04;_QI=2824|0.66|0.75|1|0|0|4|330|86
tig0021310 exon 1921 4641 1921 ID=Msa1390050-mRNA-1:exon:11975;Parent=Msa1390050-mRNA-1
tig0021310 exon 5729 5858 5729 ID=Msa1390050-mRNA-1:exon:11976;Parent=Msa1390050-mRNA-1
tig0021310 exon 6143 6304 6143 ID=Msa1390050-mRNA-1:exon:11977;Parent=Msa1390050-mRNA-1
tig0021310 exon 6403 6804 6403 ID=Msa1390050-mRNA-1:exon:11978;Parent=Msa1390050-mRNA-1
tig0021310 five_prime_UTR 1921 4641 1921 ID=Msa1390050-mRNA-1:five_prime_utr;Parent=Msa1390050-mRNA-1
tig0021310 five_prime_UTR 5729 5831 5729 ID=Msa1390050-mRNA-1:five_prime_utr;Parent=Msa1390050-mRNA-1
tig0021310 CDS 5832 5858 5832 ID=Msa1390050-mRNA-1:cds;Parent=Msa1390050-mRNA-1
tig0021310 CDS 6143 6304 6143 ID=Msa1390050-mRNA-1:cds;Parent=Msa1390050-mRNA-1
tig0021310 CDS 6403 6474 6403 ID=Msa1390050-mRNA-1:cds;Parent=Msa1390050-mRNA-1
tig0021310 three_prime_UTR 6475 6804 6475 ID=Msa1390050-mRNA-1:three_prime_utr;Parent=Msa1390050-mRNA-1
Gene Sequence

>Msa1390050

ATGGAAATGCTTTTGATGGATGCTAAGTATTTTGGCAGTTTTATGCTTTTTTTTTGCAGAGTCACAGATAAGCATCAAAATTCAAAGGATGCAGAAGGTGCTGCACGTTTTAAGAGACGACGGGTCCTGATGGAAAAACATGCGAGTAGGAGTGAAAATGAACCCTTACCTAAGCAATGCATAATAATGCTATGGATAGACATCAAAGCTCAAAAGAGGATGCAGCTGATGCACACAGGTTGCGGAGAAGAATGGTTATGA

Protein sequence

>Msa1390050

MEMLLMDAKYFGSFMLFFCRVTDKHQNSKDAEGAARFKRRRVLMEKHASRSENEPLPKQCIIMLWIDIKAQKRMQLMHTGCGEEWL*