Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205570 | GAU49845.1 | 90.625 | 160 | 15 | 0 | 1 | 160 | 1 | 160 | 1.16e-100 | 296 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205570 | sp|Q6L4D2|PM19L_ORYSJ | 46.154 | 143 | 63 | 3 | 13 | 154 | 12 | 141 | 2.59e-26 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205570 | A0A2Z6PI69 | 90.625 | 160 | 15 | 0 | 1 | 160 | 1 | 160 | 5.56e-101 | 296 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015150 | Msa0205570 | 0.814910 | 1.210771e-51 | -8.615850e-47 |
| Msa0064120 | Msa0205570 | 0.804067 | 2.581239e-49 | -8.615850e-47 |
| Msa0108880 | Msa0205570 | 0.813732 | 2.205145e-51 | -8.615850e-47 |
| Msa0155180 | Msa0205570 | 0.805647 | 1.206656e-49 | -8.615850e-47 |
| Msa0205570 | Msa0460630 | 0.812051 | 5.150293e-51 | -8.615850e-47 |
| Msa0205570 | Msa0579780 | 0.803613 | 3.207217e-49 | -8.615850e-47 |
| Msa0205570 | Msa0649840 | 0.807163 | 5.781759e-50 | -8.615850e-47 |
| Msa0205570 | Msa0740090 | 0.806802 | 6.892861e-50 | -8.615850e-47 |
| Msa0205570 | Msa0820380 | 0.807029 | 6.170159e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205570 | MtrunA17_Chr2g0303931 | 95.625 | 160 | 7 | 0 | 1 | 160 | 1 | 160 | 7.06e-94 | 269 |
| Msa0205570 | MtrunA17_Chr6g0478031 | 74.342 | 152 | 39 | 0 | 6 | 157 | 1 | 152 | 1.24e-80 | 235 |
| Msa0205570 | MtrunA17_Chr4g0065951 | 48.951 | 143 | 70 | 2 | 21 | 160 | 21 | 163 | 1.08e-39 | 132 |
| Msa0205570 | MtrunA17_Chr1g0199041 | 43.662 | 142 | 66 | 3 | 13 | 153 | 12 | 140 | 1.53e-27 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0205570 | AT5G46530.1 | 70.779 | 154 | 45 | 0 | 1 | 154 | 1 | 154 | 8.23e-81 | 236 |
| Msa0205570 | AT1G29520.1 | 75.000 | 160 | 37 | 1 | 1 | 160 | 1 | 157 | 1.14e-75 | 223 |
| Msa0205570 | AT5G18970.1 | 44.444 | 153 | 85 | 0 | 1 | 153 | 1 | 153 | 6.52e-40 | 133 |
| Msa0205570 | AT1G04560.1 | 43.506 | 154 | 73 | 3 | 1 | 153 | 1 | 141 | 6.73e-32 | 113 |
Find 45 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATCCTAGTCCTGTGTTTA+AGG | 0.115347 | 2_1:+32494465 | Msa0205570:five_prime_UTR |
| GTGTTATTTGCTTTGATTGC+TGG | 0.240660 | 2_1:+32494988 | Msa0205570:CDS |
| GCCAATTGCTACTCTTCTTT+TGG | 0.240696 | 2_1:+32494592 | Msa0205570:CDS |
| GGGATTGGATCATTGATTTC+AGG | 0.284608 | 2_1:+32495018 | Msa0205570:CDS |
| GGTGTGGTATATTACATAAT+TGG | 0.287282 | 2_1:+32495604 | Msa0205570:three_prime_UTR |
| TTCTACATAGCTGCTATTCA+TGG | 0.313701 | 2_1:+32495482 | Msa0205570:CDS |
| GGCTCTTACTGTTCTTGCTA+TGG | 0.345710 | 2_1:+32495110 | Msa0205570:CDS |
| ATTTCCCATAGGGAAGTATA+TGG | 0.353145 | 2_1:-32494947 | None:intergenic |
| TTCATGGTGCTGCTGCTATA+AGG | 0.353684 | 2_1:+32495498 | Msa0205570:CDS |
| CTTCAGTTGCTGCTATTGCA+TGG | 0.353823 | 2_1:+32495088 | Msa0205570:CDS |
| ATGATCAATTGCTCTATTCA+TGG | 0.373348 | 2_1:-32494663 | None:intergenic |
| TGTGTAAATGAGGGCTCTTA+TGG | 0.375464 | 2_1:-32494434 | None:intergenic |
| TTACATAATTGGATTTGTAT+TGG | 0.379423 | 2_1:+32495615 | Msa0205570:three_prime_UTR |
| GCTCTTACTGTTCTTGCTAT+GGG | 0.388278 | 2_1:+32495111 | Msa0205570:CDS |
| GCTTTGATTGCTGGAGTTGT+TGG | 0.390206 | 2_1:+32494997 | Msa0205570:CDS |
| CTTTGATTGCTGGAGTTGTT+GGG | 0.394153 | 2_1:+32494998 | Msa0205570:CDS |
| ATTGCTGGAGTTGTTGGGAT+TGG | 0.414658 | 2_1:+32495003 | Msa0205570:CDS |
| TTCACCCATATACTTCCCTA+TGG | 0.422542 | 2_1:+32494942 | Msa0205570:CDS |
| GACTCAATCATATCCGTTCA+TGG | 0.439245 | 2_1:+32495040 | Msa0205570:CDS |
| TAACATCAGAAATGCTAGTC+TGG | 0.443721 | 2_1:+32495323 | Msa0205570:CDS |
| TTCAGTTGCTGCTATTGCAT+GGG | 0.452736 | 2_1:+32495089 | Msa0205570:CDS |
| AATACCACAAAACTTAGAAA+TGG | 0.454906 | 2_1:+32494553 | Msa0205570:exon |
| TTGTTATAAGCATTGGTGGA+TGG | 0.461891 | 2_1:+32494639 | Msa0205570:CDS |
| GCAGCAACTGAAGCTGCAGC+TGG | 0.466603 | 2_1:-32495078 | None:intergenic |
| TGTTATAAGCATTGGTGGAT+GGG | 0.469274 | 2_1:+32494640 | Msa0205570:CDS |
| GTCATTGTTATAAGCATTGG+TGG | 0.489752 | 2_1:+32494635 | Msa0205570:CDS |
| ATGAATAGAGCAATTGATCA+TGG | 0.493796 | 2_1:+32494665 | Msa0205570:CDS |
| ACAAATGTTGTGTGTAAATG+AGG | 0.498444 | 2_1:-32494444 | None:intergenic |
| ACCAAAAGAAGAGTAGCAAT+TGG | 0.500043 | 2_1:-32494593 | None:intergenic |
| AGAAAAGCTGTGTAGCTGTA+AGG | 0.509231 | 2_1:-32495463 | None:intergenic |
| TAAGTATATACGAGAAGTGA+TGG | 0.516920 | 2_1:-32494399 | None:intergenic |
| CCTATGGGAAATGCTGCCAC+TGG | 0.518133 | 2_1:+32494958 | Msa0205570:CDS |
| TCACCCATATACTTCCCTAT+GGG | 0.537916 | 2_1:+32494943 | Msa0205570:CDS |
| CTCTTACTGTTCTTGCTATG+GGG | 0.540451 | 2_1:+32495112 | Msa0205570:CDS |
| CAGTGGCAGCATTTCCCATA+GGG | 0.547995 | 2_1:-32494957 | None:intergenic |
| TATGTCATTGTTATAAGCAT+TGG | 0.550512 | 2_1:+32494632 | Msa0205570:CDS |
| TGAGCAGGAAGATCAAATCC+TGG | 0.560912 | 2_1:-32494916 | None:intergenic |
| CCAGTGGCAGCATTTCCCAT+AGG | 0.588951 | 2_1:-32494958 | None:intergenic |
| AATGCCTTAAACACAGGACT+AGG | 0.590612 | 2_1:-32494469 | None:intergenic |
| ATAATCAATGATTGAATGTG+TGG | 0.593895 | 2_1:+32495529 | Msa0205570:three_prime_UTR |
| TTTCCCATAGGGAAGTATAT+GGG | 0.602197 | 2_1:-32494946 | None:intergenic |
| TAAGGGAAGGGAATTTCAGA+AGG | 0.616097 | 2_1:-32494511 | None:intergenic |
| AGCTCTCTGAAGTCCATGAA+CGG | 0.627243 | 2_1:-32495053 | None:intergenic |
| CAAATGTTGTGTGTAAATGA+GGG | 0.655593 | 2_1:-32494443 | None:intergenic |
| AAATAACACAAAGAATCCAG+TGG | 0.711364 | 2_1:-32494974 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTATTTATTTTT+TGG | + | chr2_1:32495583-32495602 | Msa0205570:three_prime_UTR | 0.0% |
| !!! | TTATTTTTTTATTTATTTTT+TGG | + | chr2_1:32495583-32495602 | Msa0205570:three_prime_UTR | 0.0% |
| !!! | TTTTTCAATTCATTTTTAAT+TGG | + | chr2_1:32494791-32494810 | Msa0205570:intron | 10.0% |
| !!! | TTTTTCAATTCATTTTTAAT+TGG | + | chr2_1:32494791-32494810 | Msa0205570:intron | 10.0% |
| !!! | TTTTTATTTATTTTTTGGTG+TGG | + | chr2_1:32495588-32495607 | Msa0205570:three_prime_UTR | 15.0% |
| !!! | TTTTTATTTATTTTTTGGTG+TGG | + | chr2_1:32495588-32495607 | Msa0205570:three_prime_UTR | 15.0% |
| !! | AACAAACAAAAAAAAGCTAA+GGG | - | chr2_1:32494531-32494550 | None:intergenic | 20.0% |
| !! | AATTCAAAACTCTTTGTTAA+GGG | - | chr2_1:32495403-32495422 | None:intergenic | 20.0% |
| !! | TTACATAATTGGATTTGTAT+TGG | + | chr2_1:32495615-32495634 | Msa0205570:three_prime_UTR | 20.0% |
| !! | AACAAACAAAAAAAAGCTAA+GGG | - | chr2_1:32494531-32494550 | None:intergenic | 20.0% |
| !! | AATTCAAAACTCTTTGTTAA+GGG | - | chr2_1:32495403-32495422 | None:intergenic | 20.0% |
| !! | TTACATAATTGGATTTGTAT+TGG | + | chr2_1:32495615-32495634 | Msa0205570:three_prime_UTR | 20.0% |
| ! | GAACAAACAAAAAAAAGCTA+AGG | - | chr2_1:32494532-32494551 | None:intergenic | 25.0% |
| !!! | ATTTCTAAGTTTTGTGGTAT+TGG | - | chr2_1:32494554-32494573 | None:intergenic | 25.0% |
| ! | AATACCACAAAACTTAGAAA+TGG | + | chr2_1:32494553-32494572 | Msa0205570:exon | 25.0% |
| ! | TATGTCATTGTTATAAGCAT+TGG | + | chr2_1:32494632-32494651 | Msa0205570:CDS | 25.0% |
| !!! | ATTGATCATGGTTTTGTAAT+AGG | + | chr2_1:32494677-32494696 | Msa0205570:CDS | 25.0% |
| ! | GTAAATTTACTTATCAAGCT+TGG | + | chr2_1:32494879-32494898 | Msa0205570:intron | 25.0% |
| ! | CAATTCAAAACTCTTTGTTA+AGG | - | chr2_1:32495404-32495423 | None:intergenic | 25.0% |
| ! | ATAATCAATGATTGAATGTG+TGG | + | chr2_1:32495529-32495548 | Msa0205570:three_prime_UTR | 25.0% |
| ! | GAACAAACAAAAAAAAGCTA+AGG | - | chr2_1:32494532-32494551 | None:intergenic | 25.0% |
| !!! | ATTTCTAAGTTTTGTGGTAT+TGG | - | chr2_1:32494554-32494573 | None:intergenic | 25.0% |
| ! | AATACCACAAAACTTAGAAA+TGG | + | chr2_1:32494553-32494572 | Msa0205570:exon | 25.0% |
| ! | TATGTCATTGTTATAAGCAT+TGG | + | chr2_1:32494632-32494651 | Msa0205570:CDS | 25.0% |
| !!! | ATTGATCATGGTTTTGTAAT+AGG | + | chr2_1:32494677-32494696 | Msa0205570:CDS | 25.0% |
| ! | GTAAATTTACTTATCAAGCT+TGG | + | chr2_1:32494879-32494898 | Msa0205570:intron | 25.0% |
| ! | CAATTCAAAACTCTTTGTTA+AGG | - | chr2_1:32495404-32495423 | None:intergenic | 25.0% |
| ! | ATAATCAATGATTGAATGTG+TGG | + | chr2_1:32495529-32495548 | Msa0205570:three_prime_UTR | 25.0% |
| TAAGTATATACGAGAAGTGA+TGG | - | chr2_1:32494402-32494421 | None:intergenic | 30.0% | |
| CAAATGTTGTGTGTAAATGA+GGG | - | chr2_1:32494446-32494465 | None:intergenic | 30.0% | |
| ACAAATGTTGTGTGTAAATG+AGG | - | chr2_1:32494447-32494466 | None:intergenic | 30.0% | |
| AAGAAAAATGCCTTAAACAC+AGG | - | chr2_1:32494478-32494497 | None:intergenic | 30.0% | |
| ACAAAAAAAAGCTAAGGGAA+GGG | - | chr2_1:32494526-32494545 | None:intergenic | 30.0% | |
| AACAAAAAAAAGCTAAGGGA+AGG | - | chr2_1:32494527-32494546 | None:intergenic | 30.0% | |
| !! | TTTGCCATTTCTAAGTTTTG+TGG | - | chr2_1:32494560-32494579 | None:intergenic | 30.0% |
| ATGATCAATTGCTCTATTCA+TGG | - | chr2_1:32494666-32494685 | None:intergenic | 30.0% | |
| ATGAATAGAGCAATTGATCA+TGG | + | chr2_1:32494665-32494684 | Msa0205570:CDS | 30.0% | |
| AAATAACACAAAGAATCCAG+TGG | - | chr2_1:32494977-32494996 | None:intergenic | 30.0% | |
| ACCATCAAAGTTATAAATCG+AGG | + | chr2_1:32495172-32495191 | Msa0205570:intron | 30.0% | |
| ACCTCGATTTATAACTTTGA+TGG | - | chr2_1:32495176-32495195 | None:intergenic | 30.0% | |
| AAAGTTATAAATCGAGGTTG+CGG | + | chr2_1:32495178-32495197 | Msa0205570:intron | 30.0% | |
| ! | TTACAGAATGCCATTTAGTA+AGG | - | chr2_1:32495236-32495255 | None:intergenic | 30.0% |
| !! | ATATGCCACTTTACTAGTTA+GGG | - | chr2_1:32495267-32495286 | None:intergenic | 30.0% |
| !!! | CATATGATTTTTTGCAGCTT+TGG | + | chr2_1:32495282-32495301 | Msa0205570:intron | 30.0% |
| ! | GACGGTAAATATATTTTTCC+CGG | - | chr2_1:32495354-32495373 | None:intergenic | 30.0% |
| ! | TTCAATTTTGCAGAAAGCTA+TGG | + | chr2_1:32495424-32495443 | Msa0205570:intron | 30.0% |
| GGTGTGGTATATTACATAAT+TGG | + | chr2_1:32495604-32495623 | Msa0205570:three_prime_UTR | 30.0% | |
| TAAGTATATACGAGAAGTGA+TGG | - | chr2_1:32494402-32494421 | None:intergenic | 30.0% | |
| CAAATGTTGTGTGTAAATGA+GGG | - | chr2_1:32494446-32494465 | None:intergenic | 30.0% | |
| ACAAATGTTGTGTGTAAATG+AGG | - | chr2_1:32494447-32494466 | None:intergenic | 30.0% | |
| AAGAAAAATGCCTTAAACAC+AGG | - | chr2_1:32494478-32494497 | None:intergenic | 30.0% | |
| ACAAAAAAAAGCTAAGGGAA+GGG | - | chr2_1:32494526-32494545 | None:intergenic | 30.0% | |
| AACAAAAAAAAGCTAAGGGA+AGG | - | chr2_1:32494527-32494546 | None:intergenic | 30.0% | |
| !! | TTTGCCATTTCTAAGTTTTG+TGG | - | chr2_1:32494560-32494579 | None:intergenic | 30.0% |
| ATGATCAATTGCTCTATTCA+TGG | - | chr2_1:32494666-32494685 | None:intergenic | 30.0% | |
| ATGAATAGAGCAATTGATCA+TGG | + | chr2_1:32494665-32494684 | Msa0205570:CDS | 30.0% | |
| AAATAACACAAAGAATCCAG+TGG | - | chr2_1:32494977-32494996 | None:intergenic | 30.0% | |
| ACCATCAAAGTTATAAATCG+AGG | + | chr2_1:32495172-32495191 | Msa0205570:intron | 30.0% | |
| ACCTCGATTTATAACTTTGA+TGG | - | chr2_1:32495176-32495195 | None:intergenic | 30.0% | |
| AAAGTTATAAATCGAGGTTG+CGG | + | chr2_1:32495178-32495197 | Msa0205570:intron | 30.0% | |
| ! | TTACAGAATGCCATTTAGTA+AGG | - | chr2_1:32495236-32495255 | None:intergenic | 30.0% |
| !! | ATATGCCACTTTACTAGTTA+GGG | - | chr2_1:32495267-32495286 | None:intergenic | 30.0% |
| !!! | CATATGATTTTTTGCAGCTT+TGG | + | chr2_1:32495282-32495301 | Msa0205570:intron | 30.0% |
| ! | GACGGTAAATATATTTTTCC+CGG | - | chr2_1:32495354-32495373 | None:intergenic | 30.0% |
| ! | TTCAATTTTGCAGAAAGCTA+TGG | + | chr2_1:32495424-32495443 | Msa0205570:intron | 30.0% |
| GGTGTGGTATATTACATAAT+TGG | + | chr2_1:32495604-32495623 | Msa0205570:three_prime_UTR | 30.0% | |
| ACCAAAAGAAGAGTAGCAAT+TGG | - | chr2_1:32494596-32494615 | None:intergenic | 35.0% | |
| !! | GTCATTGTTATAAGCATTGG+TGG | + | chr2_1:32494635-32494654 | Msa0205570:CDS | 35.0% |
| !! | TTGTTATAAGCATTGGTGGA+TGG | + | chr2_1:32494639-32494658 | Msa0205570:CDS | 35.0% |
| !! | TGTTATAAGCATTGGTGGAT+GGG | + | chr2_1:32494640-32494659 | Msa0205570:CDS | 35.0% |
| ! | TTGGATTCAGAAAGTGTGTA+TGG | - | chr2_1:32494747-32494766 | None:intergenic | 35.0% |
| TTGAGCGAAGAAATCACATT+TGG | - | chr2_1:32494766-32494785 | None:intergenic | 35.0% | |
| TATATGGGTGAAAAATGAGC+AGG | - | chr2_1:32494934-32494953 | None:intergenic | 35.0% | |
| ! | TTTCCCATAGGGAAGTATAT+GGG | - | chr2_1:32494949-32494968 | None:intergenic | 35.0% |
| ! | ATTTCCCATAGGGAAGTATA+TGG | - | chr2_1:32494950-32494969 | None:intergenic | 35.0% |
| !! | GTGTTATTTGCTTTGATTGC+TGG | + | chr2_1:32494988-32495007 | Msa0205570:CDS | 35.0% |
| ATATCGCAGACCTTACTAAA+TGG | + | chr2_1:32495223-32495242 | Msa0205570:intron | 35.0% | |
| !! | CATATGCCACTTTACTAGTT+AGG | - | chr2_1:32495268-32495287 | None:intergenic | 35.0% |
| TAACATCAGAAATGCTAGTC+TGG | + | chr2_1:32495323-32495342 | Msa0205570:CDS | 35.0% | |
| TACGAACATCAGAAAAACGA+CGG | - | chr2_1:32495372-32495391 | None:intergenic | 35.0% | |
| ! | AATTTTGCAGAAAGCTATGG+AGG | + | chr2_1:32495427-32495446 | Msa0205570:intron | 35.0% |
| TTCTACATAGCTGCTATTCA+TGG | + | chr2_1:32495482-32495501 | Msa0205570:CDS | 35.0% | |
| ACCAAAAGAAGAGTAGCAAT+TGG | - | chr2_1:32494596-32494615 | None:intergenic | 35.0% | |
| !! | GTCATTGTTATAAGCATTGG+TGG | + | chr2_1:32494635-32494654 | Msa0205570:CDS | 35.0% |
| !! | TTGTTATAAGCATTGGTGGA+TGG | + | chr2_1:32494639-32494658 | Msa0205570:CDS | 35.0% |
| !! | TGTTATAAGCATTGGTGGAT+GGG | + | chr2_1:32494640-32494659 | Msa0205570:CDS | 35.0% |
| ! | TTGGATTCAGAAAGTGTGTA+TGG | - | chr2_1:32494747-32494766 | None:intergenic | 35.0% |
| TTGAGCGAAGAAATCACATT+TGG | - | chr2_1:32494766-32494785 | None:intergenic | 35.0% | |
| TATATGGGTGAAAAATGAGC+AGG | - | chr2_1:32494934-32494953 | None:intergenic | 35.0% | |
| ! | TTTCCCATAGGGAAGTATAT+GGG | - | chr2_1:32494949-32494968 | None:intergenic | 35.0% |
| ! | ATTTCCCATAGGGAAGTATA+TGG | - | chr2_1:32494950-32494969 | None:intergenic | 35.0% |
| !! | GTGTTATTTGCTTTGATTGC+TGG | + | chr2_1:32494988-32495007 | Msa0205570:CDS | 35.0% |
| ATATCGCAGACCTTACTAAA+TGG | + | chr2_1:32495223-32495242 | Msa0205570:intron | 35.0% | |
| !! | CATATGCCACTTTACTAGTT+AGG | - | chr2_1:32495268-32495287 | None:intergenic | 35.0% |
| TAACATCAGAAATGCTAGTC+TGG | + | chr2_1:32495323-32495342 | Msa0205570:CDS | 35.0% | |
| TACGAACATCAGAAAAACGA+CGG | - | chr2_1:32495372-32495391 | None:intergenic | 35.0% | |
| ! | AATTTTGCAGAAAGCTATGG+AGG | + | chr2_1:32495427-32495446 | Msa0205570:intron | 35.0% |
| TTCTACATAGCTGCTATTCA+TGG | + | chr2_1:32495482-32495501 | Msa0205570:CDS | 35.0% | |
| TGTGTAAATGAGGGCTCTTA+TGG | - | chr2_1:32494437-32494456 | None:intergenic | 40.0% | |
| GTATCCTAGTCCTGTGTTTA+AGG | + | chr2_1:32494465-32494484 | Msa0205570:five_prime_UTR | 40.0% | |
| AATGCCTTAAACACAGGACT+AGG | - | chr2_1:32494472-32494491 | None:intergenic | 40.0% | |
| TAAGGGAAGGGAATTTCAGA+AGG | - | chr2_1:32494514-32494533 | None:intergenic | 40.0% | |
| ! | GCCAATTGCTACTCTTCTTT+TGG | + | chr2_1:32494592-32494611 | Msa0205570:CDS | 40.0% |
| ! | TGCTTCGTTCTAAGTGTGTA+TGG | - | chr2_1:32494852-32494871 | None:intergenic | 40.0% |
| TCAAGCTTGGTTATGTTTGC+AGG | + | chr2_1:32494892-32494911 | Msa0205570:intron | 40.0% | |
| TTCACCCATATACTTCCCTA+TGG | + | chr2_1:32494942-32494961 | Msa0205570:CDS | 40.0% | |
| TCACCCATATACTTCCCTAT+GGG | + | chr2_1:32494943-32494962 | Msa0205570:CDS | 40.0% | |
| CTTTGATTGCTGGAGTTGTT+GGG | + | chr2_1:32494998-32495017 | Msa0205570:CDS | 40.0% | |
| !! | GGGATTGGATCATTGATTTC+AGG | + | chr2_1:32495018-32495037 | Msa0205570:CDS | 40.0% |
| GACTCAATCATATCCGTTCA+TGG | + | chr2_1:32495040-32495059 | Msa0205570:CDS | 40.0% | |
| TTCAGTTGCTGCTATTGCAT+GGG | + | chr2_1:32495089-32495108 | Msa0205570:CDS | 40.0% | |
| ! | GCTCTTACTGTTCTTGCTAT+GGG | + | chr2_1:32495111-32495130 | Msa0205570:CDS | 40.0% |
| ! | CTCTTACTGTTCTTGCTATG+GGG | + | chr2_1:32495112-32495131 | Msa0205570:CDS | 40.0% |
| AAGGTCTGCGATATAAGACT+TGG | - | chr2_1:32495217-32495236 | None:intergenic | 40.0% | |
| CACATCCCTAACTAGTAAAG+TGG | + | chr2_1:32495259-32495278 | Msa0205570:intron | 40.0% | |
| ! | AAATGCTAGTCTGGTAAGAC+CGG | + | chr2_1:32495332-32495351 | Msa0205570:intron | 40.0% |
| AGAAAAGCTGTGTAGCTGTA+AGG | - | chr2_1:32495466-32495485 | None:intergenic | 40.0% | |
| TGTGTAAATGAGGGCTCTTA+TGG | - | chr2_1:32494437-32494456 | None:intergenic | 40.0% | |
| GTATCCTAGTCCTGTGTTTA+AGG | + | chr2_1:32494465-32494484 | Msa0205570:five_prime_UTR | 40.0% | |
| AATGCCTTAAACACAGGACT+AGG | - | chr2_1:32494472-32494491 | None:intergenic | 40.0% | |
| TAAGGGAAGGGAATTTCAGA+AGG | - | chr2_1:32494514-32494533 | None:intergenic | 40.0% | |
| ! | GCCAATTGCTACTCTTCTTT+TGG | + | chr2_1:32494592-32494611 | Msa0205570:CDS | 40.0% |
| ! | TGCTTCGTTCTAAGTGTGTA+TGG | - | chr2_1:32494852-32494871 | None:intergenic | 40.0% |
| TCAAGCTTGGTTATGTTTGC+AGG | + | chr2_1:32494892-32494911 | Msa0205570:intron | 40.0% | |
| TTCACCCATATACTTCCCTA+TGG | + | chr2_1:32494942-32494961 | Msa0205570:CDS | 40.0% | |
| TCACCCATATACTTCCCTAT+GGG | + | chr2_1:32494943-32494962 | Msa0205570:CDS | 40.0% | |
| CTTTGATTGCTGGAGTTGTT+GGG | + | chr2_1:32494998-32495017 | Msa0205570:CDS | 40.0% | |
| !! | GGGATTGGATCATTGATTTC+AGG | + | chr2_1:32495018-32495037 | Msa0205570:CDS | 40.0% |
| GACTCAATCATATCCGTTCA+TGG | + | chr2_1:32495040-32495059 | Msa0205570:CDS | 40.0% | |
| TTCAGTTGCTGCTATTGCAT+GGG | + | chr2_1:32495089-32495108 | Msa0205570:CDS | 40.0% | |
| ! | GCTCTTACTGTTCTTGCTAT+GGG | + | chr2_1:32495111-32495130 | Msa0205570:CDS | 40.0% |
| ! | CTCTTACTGTTCTTGCTATG+GGG | + | chr2_1:32495112-32495131 | Msa0205570:CDS | 40.0% |
| AAGGTCTGCGATATAAGACT+TGG | - | chr2_1:32495217-32495236 | None:intergenic | 40.0% | |
| CACATCCCTAACTAGTAAAG+TGG | + | chr2_1:32495259-32495278 | Msa0205570:intron | 40.0% | |
| ! | AAATGCTAGTCTGGTAAGAC+CGG | + | chr2_1:32495332-32495351 | Msa0205570:intron | 40.0% |
| AGAAAAGCTGTGTAGCTGTA+AGG | - | chr2_1:32495466-32495485 | None:intergenic | 40.0% | |
| TTGGTTATGTTTGCAGGTCC+AGG | + | chr2_1:32494898-32494917 | Msa0205570:intron | 45.0% | |
| TGAGCAGGAAGATCAAATCC+TGG | - | chr2_1:32494919-32494938 | None:intergenic | 45.0% | |
| GCTTTGATTGCTGGAGTTGT+TGG | + | chr2_1:32494997-32495016 | Msa0205570:CDS | 45.0% | |
| ATTGCTGGAGTTGTTGGGAT+TGG | + | chr2_1:32495003-32495022 | Msa0205570:CDS | 45.0% | |
| !! | AGCTCTCTGAAGTCCATGAA+CGG | - | chr2_1:32495056-32495075 | None:intergenic | 45.0% |
| CTTCAGTTGCTGCTATTGCA+TGG | + | chr2_1:32495088-32495107 | Msa0205570:CDS | 45.0% | |
| GGCTCTTACTGTTCTTGCTA+TGG | + | chr2_1:32495110-32495129 | Msa0205570:CDS | 45.0% | |
| ! | AATGCTAGTCTGGTAAGACC+GGG | + | chr2_1:32495333-32495352 | Msa0205570:intron | 45.0% |
| !! | TTCATGGTGCTGCTGCTATA+AGG | + | chr2_1:32495498-32495517 | Msa0205570:CDS | 45.0% |
| TTGGTTATGTTTGCAGGTCC+AGG | + | chr2_1:32494898-32494917 | Msa0205570:intron | 45.0% | |
| TGAGCAGGAAGATCAAATCC+TGG | - | chr2_1:32494919-32494938 | None:intergenic | 45.0% | |
| GCTTTGATTGCTGGAGTTGT+TGG | + | chr2_1:32494997-32495016 | Msa0205570:CDS | 45.0% | |
| ATTGCTGGAGTTGTTGGGAT+TGG | + | chr2_1:32495003-32495022 | Msa0205570:CDS | 45.0% | |
| !! | AGCTCTCTGAAGTCCATGAA+CGG | - | chr2_1:32495056-32495075 | None:intergenic | 45.0% |
| CTTCAGTTGCTGCTATTGCA+TGG | + | chr2_1:32495088-32495107 | Msa0205570:CDS | 45.0% | |
| GGCTCTTACTGTTCTTGCTA+TGG | + | chr2_1:32495110-32495129 | Msa0205570:CDS | 45.0% | |
| ! | AATGCTAGTCTGGTAAGACC+GGG | + | chr2_1:32495333-32495352 | Msa0205570:intron | 45.0% |
| !! | TTCATGGTGCTGCTGCTATA+AGG | + | chr2_1:32495498-32495517 | Msa0205570:CDS | 45.0% |
| !! | ATAAATAAAAAAATAATTCA+AGG | - | chr2_1:32495579-32495598 | None:intergenic | 5.0% |
| !! | ATAAATAAAAAAATAATTCA+AGG | - | chr2_1:32495579-32495598 | None:intergenic | 5.0% |
| CAGTGGCAGCATTTCCCATA+GGG | - | chr2_1:32494960-32494979 | None:intergenic | 50.0% | |
| CAGTGGCAGCATTTCCCATA+GGG | - | chr2_1:32494960-32494979 | None:intergenic | 50.0% | |
| CCAGTGGCAGCATTTCCCAT+AGG | - | chr2_1:32494961-32494980 | None:intergenic | 55.0% | |
| CCTATGGGAAATGCTGCCAC+TGG | + | chr2_1:32494958-32494977 | Msa0205570:CDS | 55.0% | |
| CCAGTGGCAGCATTTCCCAT+AGG | - | chr2_1:32494961-32494980 | None:intergenic | 55.0% | |
| CCTATGGGAAATGCTGCCAC+TGG | + | chr2_1:32494958-32494977 | Msa0205570:CDS | 55.0% | |
| GCAGCAACTGAAGCTGCAGC+TGG | - | chr2_1:32495081-32495100 | None:intergenic | 60.0% | |
| GCAGCAACTGAAGCTGCAGC+TGG | - | chr2_1:32495081-32495100 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 32494392 | 32495741 | 32494392 | ID=Msa0205570;Name=Msa0205570 |
| chr2_1 | mRNA | 32494392 | 32495741 | 32494392 | ID=Msa0205570-mRNA-1;Parent=Msa0205570;Name=Msa0205570-mRNA-1;_AED=0.03;_eAED=0.03;_QI=180|1|1|1|1|1|4|215|160 |
| chr2_1 | exon | 32494392 | 32494698 | 32494392 | ID=Msa0205570-mRNA-1:exon:11328;Parent=Msa0205570-mRNA-1 |
| chr2_1 | exon | 32494914 | 32495133 | 32494914 | ID=Msa0205570-mRNA-1:exon:11329;Parent=Msa0205570-mRNA-1 |
| chr2_1 | exon | 32495299 | 32495344 | 32495299 | ID=Msa0205570-mRNA-1:exon:11330;Parent=Msa0205570-mRNA-1 |
| chr2_1 | exon | 32495437 | 32495741 | 32495437 | ID=Msa0205570-mRNA-1:exon:11331;Parent=Msa0205570-mRNA-1 |
| chr2_1 | five_prime_UTR | 32494392 | 32494571 | 32494392 | ID=Msa0205570-mRNA-1:five_prime_utr;Parent=Msa0205570-mRNA-1 |
| chr2_1 | CDS | 32494572 | 32494698 | 32494572 | ID=Msa0205570-mRNA-1:cds;Parent=Msa0205570-mRNA-1 |
| chr2_1 | CDS | 32494914 | 32495133 | 32494914 | ID=Msa0205570-mRNA-1:cds;Parent=Msa0205570-mRNA-1 |
| chr2_1 | CDS | 32495299 | 32495344 | 32495299 | ID=Msa0205570-mRNA-1:cds;Parent=Msa0205570-mRNA-1 |
| chr2_1 | CDS | 32495437 | 32495526 | 32495437 | ID=Msa0205570-mRNA-1:cds;Parent=Msa0205570-mRNA-1 |
| chr2_1 | three_prime_UTR | 32495527 | 32495741 | 32495527 | ID=Msa0205570-mRNA-1:three_prime_utr;Parent=Msa0205570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
