Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0206160 | XP_024631713.2 | 91.532 | 496 | 42 | 0 | 1 | 496 | 1 | 496 | 0.0 | 922 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0206160 | sp|Q9LMA1|FMO1_ARATH | 41.502 | 506 | 275 | 10 | 4 | 499 | 12 | 506 | 5.41e-129 | 388 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0206160 | A0A396J7C8 | 91.532 | 496 | 42 | 0 | 1 | 496 | 1 | 496 | 0.0 | 922 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0206080 | Msa0206160 | 0.897855 | 9.379563e-77 | -8.615850e-47 |
| Msa0206120 | Msa0206160 | 0.920612 | 1.026377e-87 | -8.615850e-47 |
| Msa0206130 | Msa0206160 | 0.888076 | 8.133527e-73 | -8.615850e-47 |
| Msa0206160 | Msa0206180 | 0.889492 | 2.308119e-73 | -8.615850e-47 |
| Msa0206160 | Msa0206190 | 0.933242 | 2.528855e-95 | -8.615850e-47 |
| Msa0206160 | Msa0206200 | 0.824705 | 6.984756e-54 | -8.615850e-47 |
| Msa0206160 | Msa0249270 | 0.891104 | 5.386880e-74 | -8.615850e-47 |
| Msa0206160 | Msa0326260 | 0.878732 | 2.213206e-69 | -8.615850e-47 |
| Msa0206160 | Msa0326270 | 0.903232 | 4.288878e-79 | -8.615850e-47 |
| Msa0206160 | Msa0326280 | 0.877378 | 6.592029e-69 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0206160 | MtrunA17_Chr2g0304721 | 91.532 | 496 | 42 | 0 | 1 | 496 | 1 | 496 | 0.0 | 922 |
| Msa0206160 | MtrunA17_Chr2g0305211 | 78.357 | 499 | 105 | 1 | 1 | 496 | 1 | 499 | 0.0 | 829 |
| Msa0206160 | MtrunA17_Chr2g0305231 | 78.357 | 499 | 105 | 1 | 1 | 496 | 1 | 499 | 0.0 | 829 |
| Msa0206160 | MtrunA17_Chr2g0304651 | 77.510 | 498 | 107 | 2 | 1 | 495 | 1 | 496 | 0.0 | 795 |
| Msa0206160 | MtrunA17_Chr2g0301661 | 40.200 | 500 | 286 | 10 | 4 | 497 | 13 | 505 | 4.78e-118 | 357 |
| Msa0206160 | MtrunA17_Chr4g0070101 | 40.717 | 474 | 271 | 8 | 27 | 495 | 36 | 504 | 1.01e-115 | 351 |
| Msa0206160 | MtrunA17_Chr2g0301471 | 40.281 | 499 | 287 | 8 | 4 | 497 | 13 | 505 | 8.15e-115 | 348 |
| Msa0206160 | MtrunA17_Chr4g0070111 | 40.824 | 267 | 153 | 4 | 233 | 497 | 1 | 264 | 2.67e-63 | 207 |
| Msa0206160 | MtrunA17_Chr2g0286701 | 38.298 | 235 | 140 | 4 | 1 | 233 | 10 | 241 | 1.61e-51 | 177 |
| Msa0206160 | MtrunA17_Chr4g0070121 | 42.000 | 200 | 115 | 1 | 27 | 225 | 36 | 235 | 2.54e-47 | 164 |
| Msa0206160 | MtrunA17_Chr2g0286681 | 41.584 | 101 | 58 | 1 | 288 | 388 | 19 | 118 | 3.83e-23 | 94.4 |
| Msa0206160 | MtrunA17_Chr1g0169111 | 28.796 | 382 | 197 | 22 | 6 | 376 | 103 | 420 | 2.37e-17 | 84.7 |
| Msa0206160 | MtrunA17_Chr1g0182991 | 26.133 | 375 | 211 | 17 | 7 | 376 | 27 | 340 | 1.99e-16 | 81.3 |
| Msa0206160 | MtrunA17_Chr4g0025641 | 27.111 | 225 | 128 | 8 | 1 | 223 | 12 | 202 | 1.51e-14 | 73.2 |
| Msa0206160 | MtrunA17_Chr8g0352461 | 26.087 | 253 | 130 | 8 | 4 | 232 | 3 | 222 | 5.10e-14 | 73.9 |
| Msa0206160 | MtrunA17_Chr1g0148801 | 26.190 | 378 | 204 | 17 | 7 | 376 | 18 | 328 | 6.72e-14 | 73.6 |
| Msa0206160 | MtrunA17_Chr7g0262591 | 25.067 | 375 | 211 | 18 | 7 | 376 | 26 | 335 | 9.64e-14 | 73.2 |
| Msa0206160 | MtrunA17_Chr8g0352481 | 26.953 | 256 | 129 | 9 | 4 | 235 | 3 | 224 | 2.06e-13 | 72.0 |
| Msa0206160 | MtrunA17_Chr5g0412881 | 24.543 | 383 | 210 | 15 | 2 | 374 | 3 | 316 | 2.25e-13 | 71.6 |
| Msa0206160 | MtrunA17_Chr3g0125701 | 22.829 | 403 | 239 | 16 | 1 | 396 | 3 | 340 | 3.92e-12 | 68.2 |
| Msa0206160 | MtrunA17_Chr3g0125691 | 22.829 | 403 | 239 | 16 | 1 | 396 | 3 | 340 | 5.43e-12 | 67.4 |
| Msa0206160 | MtrunA17_Chr7g0268611 | 23.885 | 381 | 220 | 17 | 1 | 374 | 1 | 318 | 1.36e-11 | 66.2 |
| Msa0206160 | MtrunA17_Chr3g0139441 | 25.600 | 375 | 214 | 16 | 7 | 376 | 41 | 355 | 4.74e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0206160 | AT1G19250.1 | 41.502 | 506 | 275 | 10 | 4 | 499 | 12 | 506 | 5.50e-130 | 388 |
| Msa0206160 | AT5G45180.1 | 37.800 | 500 | 248 | 13 | 4 | 492 | 12 | 459 | 1.15e-106 | 326 |
| Msa0206160 | AT4G28720.1 | 26.260 | 377 | 211 | 19 | 7 | 376 | 27 | 343 | 5.91e-16 | 80.5 |
| Msa0206160 | AT1G48910.1 | 25.661 | 378 | 214 | 16 | 1 | 374 | 1 | 315 | 4.06e-15 | 77.4 |
| Msa0206160 | AT5G43890.1 | 26.330 | 376 | 212 | 19 | 7 | 376 | 27 | 343 | 3.91e-14 | 74.7 |
| Msa0206160 | AT1G62560.2 | 25.984 | 254 | 129 | 9 | 3 | 229 | 11 | 232 | 6.03e-14 | 73.9 |
| Msa0206160 | AT1G62560.1 | 25.984 | 254 | 129 | 9 | 3 | 229 | 11 | 232 | 7.20e-14 | 74.3 |
| Msa0206160 | AT1G21430.1 | 25.722 | 381 | 212 | 16 | 1 | 374 | 1 | 317 | 1.42e-13 | 72.8 |
| Msa0206160 | AT5G11320.1 | 25.532 | 376 | 207 | 17 | 7 | 376 | 19 | 327 | 3.61e-13 | 71.6 |
| Msa0206160 | AT5G11320.2 | 24.543 | 383 | 202 | 16 | 7 | 376 | 19 | 327 | 4.49e-13 | 70.9 |
| Msa0206160 | AT1G04610.1 | 25.806 | 372 | 220 | 17 | 7 | 376 | 39 | 356 | 4.50e-12 | 68.6 |
| Msa0206160 | AT1G65860.1 | 22.441 | 254 | 137 | 7 | 3 | 229 | 11 | 231 | 4.77e-12 | 68.6 |
| Msa0206160 | AT4G32540.2 | 25.132 | 378 | 210 | 18 | 7 | 376 | 23 | 335 | 3.20e-11 | 65.9 |
| Msa0206160 | AT1G62620.2 | 24.303 | 251 | 136 | 7 | 5 | 229 | 13 | 235 | 4.16e-11 | 65.1 |
| Msa0206160 | AT1G62620.1 | 24.303 | 251 | 136 | 7 | 5 | 229 | 13 | 235 | 4.24e-11 | 65.5 |
| Msa0206160 | AT1G63370.1 | 23.904 | 251 | 137 | 7 | 5 | 229 | 13 | 235 | 5.53e-11 | 65.1 |
| Msa0206160 | AT1G63370.2 | 23.904 | 251 | 137 | 7 | 5 | 229 | 13 | 235 | 5.54e-11 | 64.3 |
| Msa0206160 | AT4G13260.1 | 23.592 | 373 | 224 | 15 | 7 | 376 | 30 | 344 | 5.98e-11 | 64.7 |
| Msa0206160 | AT4G13260.2 | 24.797 | 246 | 145 | 10 | 7 | 250 | 30 | 237 | 6.56e-11 | 63.9 |
Find 100 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAACTGTCAATGTAATTT+TGG | 0.131877 | 2_1:+34919175 | None:intergenic |
| TCTCCCAGATTTCAACATTC+TGG | 0.210934 | 2_1:-34919758 | Msa0206160:CDS |
| AATAACTACATCTGTTTCTA+AGG | 0.224263 | 2_1:+34919257 | None:intergenic |
| CCCATGGAAAATCTGAAAAT+TGG | 0.228440 | 2_1:+34923798 | None:intergenic |
| CCCGGAGAACACTTCCTTCT+TGG | 0.233331 | 2_1:-34919679 | Msa0206160:CDS |
| ACACTTCCTTCTTGGCCTTT+TGG | 0.237410 | 2_1:-34919671 | Msa0206160:CDS |
| TGGAGAAGGATGTTAAATTA+TGG | 0.260934 | 2_1:-34918530 | Msa0206160:CDS |
| AGGTAAGTTTATGCATTCTA+TGG | 0.279876 | 2_1:-34920081 | Msa0206160:CDS |
| GAAATATCTGCATGTCAAAT+TGG | 0.294249 | 2_1:-34919393 | Msa0206160:CDS |
| TACCTTTGTTGAGAAATTCT+TGG | 0.304695 | 2_1:+34923550 | None:intergenic |
| AGTGGTAATGGCAGTAGTTT+TGG | 0.313462 | 2_1:-34923608 | Msa0206160:CDS |
| ATATGAAGTCATGGGAATTA+TGG | 0.316758 | 2_1:-34923631 | Msa0206160:CDS |
| CTCCCAGATTTCAACATTCT+GGG | 0.325483 | 2_1:-34919757 | Msa0206160:CDS |
| ACCATTTGCATTTGCGCATT+CGG | 0.341818 | 2_1:+34919962 | None:intergenic |
| AAAATTACATTGACAGTTCA+AGG | 0.349499 | 2_1:-34919173 | Msa0206160:CDS |
| ATGCCCAGAATGTTGAAATC+TGG | 0.349568 | 2_1:+34919754 | None:intergenic |
| TCTTGAAGAAAACTATGATT+AGG | 0.356221 | 2_1:+34919414 | None:intergenic |
| CTTTGCATTGGGAAATATAG+TGG | 0.362241 | 2_1:-34920155 | Msa0206160:CDS |
| ATAACCAGCAATTTACAAAA+TGG | 0.362970 | 2_1:-34923987 | Msa0206160:exon |
| ATTCTTGCCACAGGATATAA+AGG | 0.366577 | 2_1:-34919237 | Msa0206160:CDS |
| AATAAGAGAGTTACAGTAGT+AGG | 0.371604 | 2_1:-34920014 | Msa0206160:CDS |
| TGCAAATATGCTCTACAGAT+TGG | 0.376558 | 2_1:-34923917 | Msa0206160:CDS |
| TCTACAACTTGCTTATTACT+TGG | 0.392477 | 2_1:+34923752 | None:intergenic |
| GGGAGGAACTCAGGAATGTT+TGG | 0.394469 | 2_1:+34920128 | None:intergenic |
| GGAGAAGGATGTTAAATTAT+GGG | 0.394999 | 2_1:-34918529 | Msa0206160:CDS |
| AGAAGGATCAATTGTGCATA+TGG | 0.396501 | 2_1:-34918392 | Msa0206160:CDS |
| GCCAAGAAGGAAGTGTTCTC+CGG | 0.407386 | 2_1:+34919678 | None:intergenic |
| TTGGAATTGAATCTTATGTA+AGG | 0.408337 | 2_1:+34923692 | None:intergenic |
| TATGGGCCCACTGATTATAA+TGG | 0.412698 | 2_1:-34918374 | Msa0206160:exon |
| AAGTTGCCACTGAAGAAGTA+TGG | 0.417922 | 2_1:-34919444 | Msa0206160:CDS |
| GCATTGTTACTTGTGGCATA+TGG | 0.419103 | 2_1:-34918461 | Msa0206160:CDS |
| GTTCAAGGATTTCTCTCTAT+AGG | 0.419814 | 2_1:-34919158 | Msa0206160:intron |
| TTGTTGAAACATATCTGAAA+TGG | 0.425780 | 2_1:-34919467 | Msa0206160:CDS |
| ATAATCTATATCAATGACTT+TGG | 0.427553 | 2_1:+34923673 | None:intergenic |
| AGCTTTAGCTTCTGCAAAGA+AGG | 0.430511 | 2_1:-34919306 | Msa0206160:CDS |
| GAATCTTATGTAAGGAATGA+TGG | 0.442345 | 2_1:+34923700 | None:intergenic |
| ATGATGGTGTTGGAGGACTA+TGG | 0.447006 | 2_1:-34923868 | Msa0206160:CDS |
| AGTTTGTTATTCTTTGCATT+GGG | 0.451815 | 2_1:-34920166 | Msa0206160:CDS |
| GGCCACTTTACTTTCACCAT+TGG | 0.455226 | 2_1:-34919650 | Msa0206160:intron |
| TGTAATATGCCATGTTCCCT+TGG | 0.457974 | 2_1:+34923583 | None:intergenic |
| GAGTTTGTTATTCTTTGCAT+TGG | 0.462117 | 2_1:-34920167 | Msa0206160:CDS |
| TATCCTATCATTACCAATTG+TGG | 0.462398 | 2_1:+34918651 | None:intergenic |
| TTCTATGGATTACTCTGCCT+TGG | 0.462649 | 2_1:-34920066 | Msa0206160:CDS |
| TTGTGATTTCTTTATCTCGA+TGG | 0.463038 | 2_1:+34919329 | None:intergenic |
| ATCCTATCATTACCAATTGT+GGG | 0.466265 | 2_1:+34918652 | None:intergenic |
| AACATTCCTGAGTTCCTCCC+TGG | 0.466304 | 2_1:-34920125 | Msa0206160:CDS |
| CCTGAGTTCCTCCCTGGAAA+AGG | 0.469202 | 2_1:-34920119 | Msa0206160:CDS |
| ACATCCTCGCATCCCACAAT+TGG | 0.475049 | 2_1:-34918664 | Msa0206160:CDS |
| TGCCCAGAATGTTGAAATCT+GGG | 0.478870 | 2_1:+34919755 | None:intergenic |
| AATTGATCCTTCTTTCTCCT+CGG | 0.483772 | 2_1:+34918402 | None:intergenic |
| AACAAGACCATTATAATCAG+TGG | 0.487894 | 2_1:+34918367 | None:intergenic |
| TTGGTCACCTTTATATCCTG+TGG | 0.488352 | 2_1:+34919230 | None:intergenic |
| AGAGTTGCAATTGTTGGTGC+AGG | 0.491948 | 2_1:-34923959 | Msa0206160:CDS |
| ATCCCACAATTGGTAATGAT+AGG | 0.496661 | 2_1:-34918654 | Msa0206160:CDS |
| TCATCAGCTTCATATACAAC+AGG | 0.497177 | 2_1:+34923887 | None:intergenic |
| GTCATTGATATAGATTATGT+TGG | 0.502491 | 2_1:-34923668 | Msa0206160:CDS |
| AGAGTTACAGTAGTAGGCTC+AGG | 0.504894 | 2_1:-34920008 | Msa0206160:CDS |
| AACATTCTGGGCATTCGTCT+CGG | 0.507223 | 2_1:-34919745 | Msa0206160:CDS |
| CTAGAAAATGTGCTAACCAT+TGG | 0.509768 | 2_1:+34918586 | None:intergenic |
| TGGGAATTATGGAGTGGTAA+TGG | 0.517223 | 2_1:-34923620 | Msa0206160:CDS |
| GTGAAAGTAAAGTGGCCAAA+AGG | 0.517743 | 2_1:+34919656 | None:intergenic |
| GCCGAATGCGCAAATGCAAA+TGG | 0.517814 | 2_1:-34919963 | Msa0206160:intron |
| AAGTGGCCAAAAGGCCAAGA+AGG | 0.525815 | 2_1:+34919665 | None:intergenic |
| GATGTAGTTATTCTTGCCAC+AGG | 0.531258 | 2_1:-34919246 | Msa0206160:CDS |
| CTGATGAAGATATGAAGTCA+TGG | 0.535713 | 2_1:-34923640 | Msa0206160:CDS |
| GAAGGATCAATTGTGCATAT+GGG | 0.540837 | 2_1:-34918391 | Msa0206160:CDS |
| GTTCTATTTATAATCGTGCA+AGG | 0.542558 | 2_1:+34919793 | None:intergenic |
| TATGAAGCTGATGATGGTGT+TGG | 0.543117 | 2_1:-34923878 | Msa0206160:CDS |
| TGATGCACTCAGATAGATGC+AGG | 0.545911 | 2_1:+34924019 | None:intergenic |
| CCAAGAAGGAAGTGTTCTCC+GGG | 0.546254 | 2_1:+34919679 | None:intergenic |
| ATAACTACATCTGTTTCTAA+GGG | 0.546830 | 2_1:+34919258 | None:intergenic |
| AGCAGCAGTTTCTTTGTCCA+AGG | 0.547408 | 2_1:+34920049 | None:intergenic |
| TGGAAAATCTGAAAATTGGT+AGG | 0.552489 | 2_1:+34923802 | None:intergenic |
| GTGTAATCCGAGGAGAAAGA+AGG | 0.559111 | 2_1:-34918409 | Msa0206160:CDS |
| GTTGTATATGAAGCTGATGA+TGG | 0.564559 | 2_1:-34923884 | Msa0206160:CDS |
| CACTTCAGCAGAATACATGT+TGG | 0.565258 | 2_1:-34918335 | Msa0206160:three_prime_UTR |
| GAAGCTGATGATGGTGTTGG+AGG | 0.565452 | 2_1:-34923875 | Msa0206160:CDS |
| ATTGCCTAGTATAAAAGTGA+TGG | 0.568840 | 2_1:-34918550 | Msa0206160:CDS |
| AGATCACGCATTGTTACTTG+TGG | 0.574801 | 2_1:-34918468 | Msa0206160:CDS |
| TACCAATGGTGAAAGTAAAG+TGG | 0.578127 | 2_1:+34919648 | None:intergenic |
| TACCAAGAATTTCTCAACAA+AGG | 0.578314 | 2_1:-34923552 | Msa0206160:intron |
| TTCAGCAGAATACATGTTGG+AGG | 0.581199 | 2_1:-34918332 | Msa0206160:three_prime_UTR |
| TGATGAAGATATGAAGTCAT+GGG | 0.593792 | 2_1:-34923639 | Msa0206160:CDS |
| TCAGCAGAATACATGTTGGA+GGG | 0.608166 | 2_1:-34918331 | Msa0206160:three_prime_UTR |
| TTCTATTTATAATCGTGCAA+GGG | 0.618260 | 2_1:+34919794 | None:intergenic |
| TAGTATAAAAGTGATGGAGA+AGG | 0.619337 | 2_1:-34918544 | Msa0206160:CDS |
| GAGCATATTTGCAAGCAAGT+AGG | 0.621227 | 2_1:+34923927 | None:intergenic |
| ATTGTTGGTGCAGGAATCAG+TGG | 0.624826 | 2_1:-34923950 | Msa0206160:CDS |
| GGTAATGATAGGATATGCTG+AGG | 0.630355 | 2_1:-34918643 | Msa0206160:CDS |
| ATTACCAATTGTGGGATGCG+AGG | 0.632702 | 2_1:+34918660 | None:intergenic |
| ACAAGACCATTATAATCAGT+GGG | 0.636085 | 2_1:+34918368 | None:intergenic |
| ACTAGTCCATACTTCTTCAG+TGG | 0.645916 | 2_1:+34919438 | None:intergenic |
| CTAATGAAATGAGATGCCAA+TGG | 0.660576 | 2_1:-34918602 | Msa0206160:CDS |
| TTATAAATAGAACTTCACAC+TGG | 0.667245 | 2_1:-34919783 | Msa0206160:CDS |
| AAGTCATGGGAATTATGGAG+TGG | 0.671476 | 2_1:-34923626 | Msa0206160:CDS |
| CAGCAGAATACATGTTGGAG+GGG | 0.676165 | 2_1:-34918330 | Msa0206160:three_prime_UTR |
| TAGACATGAAGTGTAATCCG+AGG | 0.684209 | 2_1:-34918419 | Msa0206160:CDS |
| GGGAACATGGCATATTACAG+TGG | 0.699925 | 2_1:-34923579 | Msa0206160:CDS |
| GTAATGATAGGATATGCTGA+GGG | 0.704013 | 2_1:-34918642 | Msa0206160:CDS |
| ATGGTGTTGGAGGACTATGG+AGG | 0.798552 | 2_1:-34923865 | Msa0206160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTGCATATTAAAAAA+TGG | + | chr2_1:34919446-34919465 | None:intergenic | 10.0% |
| !!! | TTATTTTAGTTAACATTAAT+TGG | - | chr2_1:34919670-34919689 | Msa0206160:CDS | 10.0% |
| !!! | TATTTTAGTTAACATTAATT+GGG | - | chr2_1:34919671-34919690 | Msa0206160:CDS | 10.0% |
| !! | TCTTACAAAAATATATAAAT+TGG | + | chr2_1:34922797-34922816 | None:intergenic | 10.0% |
| !!! | TTCATATTTCATTTTCTTTT+TGG | - | chr2_1:34918855-34918874 | Msa0206160:intron | 15.0% |
| !! | TGATTAAAATTGTGTATTTA+TGG | - | chr2_1:34919164-34919183 | Msa0206160:CDS | 15.0% |
| !! | TTTGTTGAATTATAAGATTA+AGG | - | chr2_1:34920049-34920068 | Msa0206160:CDS | 15.0% |
| !! | TACAAAAGTTAGTATATTAA+TGG | + | chr2_1:34920109-34920128 | None:intergenic | 15.0% |
| !! | AAAATTAACTCATTAATTGT+CGG | - | chr2_1:34920238-34920257 | Msa0206160:intron | 15.0% |
| !! | AAAAATCAATGTGATTATTT+GGG | + | chr2_1:34920382-34920401 | None:intergenic | 15.0% |
| !! | TAAAAATCAATGTGATTATT+TGG | + | chr2_1:34920383-34920402 | None:intergenic | 15.0% |
| !! | GTATAATAATATGCATAAAT+TGG | - | chr2_1:34920848-34920867 | Msa0206160:intron | 15.0% |
| !!! | AAATATATGTTTTGAAAAAG+TGG | + | chr2_1:34921270-34921289 | None:intergenic | 15.0% |
| !! | ATTATAATGTTAGTTATCTT+TGG | - | chr2_1:34921292-34921311 | Msa0206160:intron | 15.0% |
| !!! | AACTAAGGATTTTTTTTTAA+AGG | - | chr2_1:34921368-34921387 | Msa0206160:intron | 15.0% |
| !! | TACACTAATATCTATATATA+TGG | - | chr2_1:34921479-34921498 | Msa0206160:intron | 15.0% |
| !!! | TGAATGTTGATATTTTTTTA+AGG | - | chr2_1:34921541-34921560 | Msa0206160:intron | 15.0% |
| !!! | AAAAAAAATCTTGATAATTG+TGG | - | chr2_1:34921681-34921700 | Msa0206160:intron | 15.0% |
| !!! | TATGTTTTATATGTATTTGT+AGG | + | chr2_1:34923284-34923303 | None:intergenic | 15.0% |
| !!! | TTTTAAAATATTAAAGTCAG+AGG | - | chr2_1:34923558-34923577 | Msa0206160:CDS | 15.0% |
| !!! | AATATTCCAGAAAATTTTAT+TGG | - | chr2_1:34923861-34923880 | Msa0206160:CDS | 15.0% |
| !! | ATAATCTATATCAATGACTT+TGG | + | chr2_1:34918682-34918701 | None:intergenic | 20.0% |
| !! | TTTCATAATTACAAATGTGT+TGG | - | chr2_1:34918882-34918901 | Msa0206160:intron | 20.0% |
| !! | AGAGATAAATAAAGGAAATA+TGG | - | chr2_1:34918951-34918970 | Msa0206160:intron | 20.0% |
| !!! | GTTACGAGATTTTTTTTTTT+AGG | + | chr2_1:34919122-34919141 | None:intergenic | 20.0% |
| !! | TCAAAAATCAAGATACAATA+CGG | - | chr2_1:34919366-34919385 | Msa0206160:CDS | 20.0% |
| !! | AAACAAAAGAAATCAATCAT+AGG | - | chr2_1:34919471-34919490 | Msa0206160:CDS | 20.0% |
| !! | TAACATTAATTGGGAAATAT+TGG | - | chr2_1:34919680-34919699 | Msa0206160:CDS | 20.0% |
| !! | AACATTAATTGGGAAATATT+GGG | - | chr2_1:34919681-34919700 | Msa0206160:CDS | 20.0% |
| !! | TGCTTAAATATATCATTAGT+CGG | - | chr2_1:34919939-34919958 | Msa0206160:intron | 20.0% |
| !! | GAATTATAAGATTAAGGTTA+AGG | - | chr2_1:34920055-34920074 | Msa0206160:CDS | 20.0% |
| !! | GTGAATTTGAAAAAATAATG+TGG | - | chr2_1:34920448-34920467 | Msa0206160:intron | 20.0% |
| !!! | GTGTTGTTATTTAATTTAGT+AGG | + | chr2_1:34920707-34920726 | None:intergenic | 20.0% |
| !!! | TCAATTGACTTTTGATTATT+AGG | + | chr2_1:34920729-34920748 | None:intergenic | 20.0% |
| !! | AAGCATATCACAATTTATTA+AGG | - | chr2_1:34921034-34921053 | Msa0206160:intron | 20.0% |
| !!! | AAAATTAACTTGTCTTTTTC+TGG | - | chr2_1:34921446-34921465 | Msa0206160:intron | 20.0% |
| !! | TAAGACAAAATTAACATTAG+AGG | + | chr2_1:34921519-34921538 | None:intergenic | 20.0% |
| !! | TGAAAATTGAATATATTCTG+CGG | + | chr2_1:34921969-34921988 | None:intergenic | 20.0% |
| !! | AATTATTGTTGTATTGCAAA+GGG | + | chr2_1:34922124-34922143 | None:intergenic | 20.0% |
| !! | AAATTATTGTTGTATTGCAA+AGG | + | chr2_1:34922125-34922144 | None:intergenic | 20.0% |
| !!! | TTCTTTTACTTTGTCAAAAA+AGG | + | chr2_1:34922999-34923018 | None:intergenic | 20.0% |
| !!! | TTTTTTGACAAAGTAAAAGA+AGG | - | chr2_1:34922998-34923017 | Msa0206160:intron | 20.0% |
| !!! | TGAATATGCTTTTAAGTTTT+TGG | + | chr2_1:34923144-34923163 | None:intergenic | 20.0% |
| !!! | TCAATGTAATTTTGGAATAT+TGG | + | chr2_1:34923172-34923191 | None:intergenic | 20.0% |
| !! | CAAATCATACATAAGAAAAT+AGG | + | chr2_1:34923259-34923278 | None:intergenic | 20.0% |
| !!! | CTATTTTCTTATGTATGATT+TGG | - | chr2_1:34923257-34923276 | Msa0206160:intron | 20.0% |
| !!! | AATTTAAGATTAGCTTACAA+AGG | + | chr2_1:34923402-34923421 | None:intergenic | 20.0% |
| ! | ATAACCAGCAATTTACAAAA+TGG | - | chr2_1:34918365-34918384 | Msa0206160:exon | 25.0% |
| !! | TTTTCCATTTTGTAAATTGC+TGG | + | chr2_1:34918372-34918391 | None:intergenic | 25.0% |
| ! | TTGGAATTGAATCTTATGTA+AGG | + | chr2_1:34918663-34918682 | None:intergenic | 25.0% |
| ! | GTCATTGATATAGATTATGT+TGG | - | chr2_1:34918684-34918703 | Msa0206160:intron | 25.0% |
| ! | GAAACGTTAGAGATAAATAA+AGG | - | chr2_1:34918943-34918962 | Msa0206160:intron | 25.0% |
| !! | TCTCGAGTAAAACTATATTT+TGG | + | chr2_1:34919015-34919034 | None:intergenic | 25.0% |
| ! | TTCACAAATTATCATCTATG+GGG | + | chr2_1:34919285-34919304 | None:intergenic | 25.0% |
| ! | CTTCACAAATTATCATCTAT+GGG | + | chr2_1:34919286-34919305 | None:intergenic | 25.0% |
| ! | TTGATAAAGTATACCACTAA+CGG | + | chr2_1:34919596-34919615 | None:intergenic | 25.0% |
| ! | ACATTAATTGGGAAATATTG+GGG | - | chr2_1:34919682-34919701 | Msa0206160:CDS | 25.0% |
| !!! | CGTCATCCATTTTTAAATAT+CGG | - | chr2_1:34919869-34919888 | Msa0206160:intron | 25.0% |
| !!! | GTCATCCATTTTTAAATATC+GGG | - | chr2_1:34919870-34919889 | Msa0206160:intron | 25.0% |
| !!! | TCATCCATTTTTAAATATCG+GGG | - | chr2_1:34919871-34919890 | Msa0206160:intron | 25.0% |
| ! | TTATGGTATTACAGTCATAA+TGG | + | chr2_1:34919980-34919999 | None:intergenic | 25.0% |
| ! | ATCATAGTCTTTATAGACAA+AGG | - | chr2_1:34920501-34920520 | Msa0206160:intron | 25.0% |
| ! | ATTGTATGCTACTAAAACAA+AGG | + | chr2_1:34920569-34920588 | None:intergenic | 25.0% |
| ! | ATAATGTTAGTTATCTTTGG+CGG | - | chr2_1:34921295-34921314 | Msa0206160:intron | 25.0% |
| ! | CTTGATAAGCTATTTATGTT+TGG | + | chr2_1:34921821-34921840 | None:intergenic | 25.0% |
| ! | ATATAAGCTGTTTATCCAAA+CGG | - | chr2_1:34921897-34921916 | Msa0206160:intron | 25.0% |
| ! | AAAATTGAATATATTCTGCG+GGG | + | chr2_1:34921967-34921986 | None:intergenic | 25.0% |
| ! | GAAAATTGAATATATTCTGC+GGG | + | chr2_1:34921968-34921987 | None:intergenic | 25.0% |
| ! | AAGTTAAAGCAAAGTTTGTA+AGG | + | chr2_1:34922002-34922021 | None:intergenic | 25.0% |
| ! | AAGATATTAACATGCAATCA+CGG | - | chr2_1:34922086-34922105 | Msa0206160:intron | 25.0% |
| !!! | AGTTTGTTATTCTTTGCATT+GGG | - | chr2_1:34922186-34922205 | Msa0206160:intron | 25.0% |
| ! | TTCAATCCATTAATTTCTAC+AGG | - | chr2_1:34922526-34922545 | Msa0206160:intron | 25.0% |
| ! | TTCTATTTATAATCGTGCAA+GGG | + | chr2_1:34922561-34922580 | None:intergenic | 25.0% |
| ! | TTATAAATAGAACTTCACAC+TGG | - | chr2_1:34922569-34922588 | Msa0206160:intron | 25.0% |
| !! | CAATCTAAATTTTCAGAGAT+GGG | - | chr2_1:34922850-34922869 | Msa0206160:intron | 25.0% |
| !! | AATCTAAATTTTCAGAGATG+GGG | - | chr2_1:34922851-34922870 | Msa0206160:intron | 25.0% |
| ! | TTGTTGAAACATATCTGAAA+TGG | - | chr2_1:34922885-34922904 | Msa0206160:intron | 25.0% |
| ! | TCTTGAAGAAAACTATGATT+AGG | + | chr2_1:34922941-34922960 | None:intergenic | 25.0% |
| !!! | ATAACTACATCTGTTTCTAA+GGG | + | chr2_1:34923097-34923116 | None:intergenic | 25.0% |
| !!! | AATAACTACATCTGTTTCTA+AGG | + | chr2_1:34923098-34923117 | None:intergenic | 25.0% |
| !! | TTGAACTGTCAATGTAATTT+TGG | + | chr2_1:34923180-34923199 | None:intergenic | 25.0% |
| ! | AAAATTACATTGACAGTTCA+AGG | - | chr2_1:34923179-34923198 | Msa0206160:intron | 25.0% |
| ! | TGTAACAAAAACACAGATAA+AGG | + | chr2_1:34923494-34923513 | None:intergenic | 25.0% |
| ! | AAATTCTCTATACTAATCCA+TGG | - | chr2_1:34923643-34923662 | Msa0206160:CDS | 25.0% |
| !! | TGATCTCCAATAAAATTTTC+TGG | + | chr2_1:34923870-34923889 | None:intergenic | 25.0% |
| GAAAAAAGAGTTGCAATTGT+TGG | - | chr2_1:34918387-34918406 | Msa0206160:CDS | 30.0% | |
| !! | AAAATTGGTAGGCTTGTTTT+CGG | + | chr2_1:34918542-34918561 | None:intergenic | 30.0% |
| TGGAAAATCTGAAAATTGGT+AGG | + | chr2_1:34918553-34918572 | None:intergenic | 30.0% | |
| ! | ACCAATTTTCAGATTTTCCA+TGG | - | chr2_1:34918553-34918572 | Msa0206160:CDS | 30.0% |
| ! | CCAATTTTCAGATTTTCCAT+GGG | - | chr2_1:34918554-34918573 | Msa0206160:CDS | 30.0% |
| ! | TCTACAACTTGCTTATTACT+TGG | + | chr2_1:34918603-34918622 | None:intergenic | 30.0% |
| GAATCTTATGTAAGGAATGA+TGG | + | chr2_1:34918655-34918674 | None:intergenic | 30.0% | |
| TGATGAAGATATGAAGTCAT+GGG | - | chr2_1:34918713-34918732 | Msa0206160:intron | 30.0% | |
| ATATGAAGTCATGGGAATTA+TGG | - | chr2_1:34918721-34918740 | Msa0206160:intron | 30.0% | |
| TACCAAGAATTTCTCAACAA+AGG | - | chr2_1:34918800-34918819 | Msa0206160:intron | 30.0% | |
| TACCTTTGTTGAGAAATTCT+TGG | + | chr2_1:34918805-34918824 | None:intergenic | 30.0% | |
| TCACAAATTATCATCTATGG+GGG | + | chr2_1:34919284-34919303 | None:intergenic | 30.0% | |
| GCTTCACAAATTATCATCTA+TGG | + | chr2_1:34919287-34919306 | None:intergenic | 30.0% | |
| !!! | TTGGATTAGTGCTTCTTTTT+TGG | + | chr2_1:34919620-34919639 | None:intergenic | 30.0% |
| !!! | AGTACTGATGTGTTCTTTTT+TGG | + | chr2_1:34919639-34919658 | None:intergenic | 30.0% |
| TATCGGTGCATGATAATTAT+CGG | - | chr2_1:34919709-34919728 | Msa0206160:CDS | 30.0% | |
| TCATCTGCCACATTAATTTA+TGG | - | chr2_1:34920139-34920158 | Msa0206160:CDS | 30.0% | |
| AGAAAATGGCATAGAAATGA+AGG | + | chr2_1:34920269-34920288 | None:intergenic | 30.0% | |
| ATAGACAAAGGAAAAAGATC+TGG | - | chr2_1:34920513-34920532 | Msa0206160:intron | 30.0% | |
| ! | TCTAACTTCTCCTTTTCTTT+TGG | + | chr2_1:34920539-34920558 | None:intergenic | 30.0% |
| ! | ACATCAATTCGACATGTTTT+TGG | - | chr2_1:34920671-34920690 | Msa0206160:intron | 30.0% |
| ! | ACTCCTATAAGCCTTTTTAA+AGG | - | chr2_1:34921100-34921119 | Msa0206160:intron | 30.0% |
| ! | ACACCTTTAAAAAGGCTTAT+AGG | + | chr2_1:34921106-34921125 | None:intergenic | 30.0% |
| !!! | TAAGCCTTTTTAAAGGTGTT+TGG | - | chr2_1:34921107-34921126 | Msa0206160:intron | 30.0% |
| !!! | AAGCCTTTTTAAAGGTGTTT+GGG | - | chr2_1:34921108-34921127 | Msa0206160:intron | 30.0% |
| ! | TTACCCAAACACCTTTAAAA+AGG | + | chr2_1:34921114-34921133 | None:intergenic | 30.0% |
| TATAGATGCTTATGGCATTA+GGG | + | chr2_1:34921880-34921899 | None:intergenic | 30.0% | |
| ATATAGATGCTTATGGCATT+AGG | + | chr2_1:34921881-34921900 | None:intergenic | 30.0% | |
| ACAGCTTATATAGATGCTTA+TGG | + | chr2_1:34921888-34921907 | None:intergenic | 30.0% | |
| TATAAGCTGTTTATCCAAAC+GGG | - | chr2_1:34921898-34921917 | Msa0206160:intron | 30.0% | |
| CAAAGTTTGTAAGGACATAT+TGG | + | chr2_1:34921993-34922012 | None:intergenic | 30.0% | |
| GACTGAATGTTTACAATAAC+AGG | - | chr2_1:34922151-34922170 | Msa0206160:intron | 30.0% | |
| !! | GAGTTTGTTATTCTTTGCAT+TGG | - | chr2_1:34922185-34922204 | Msa0206160:intron | 30.0% |
| ACTTACCTGTAAAAACTTCT+GGG | + | chr2_1:34922259-34922278 | None:intergenic | 30.0% | |
| AACTTACCTGTAAAAACTTC+TGG | + | chr2_1:34922260-34922279 | None:intergenic | 30.0% | |
| AGGTAAGTTTATGCATTCTA+TGG | - | chr2_1:34922271-34922290 | Msa0206160:intron | 30.0% | |
| AATAAGAGAGTTACAGTAGT+AGG | - | chr2_1:34922338-34922357 | Msa0206160:intron | 30.0% | |
| GTGATTCCTGTAGAAATTAA+TGG | + | chr2_1:34922535-34922554 | None:intergenic | 30.0% | |
| GTTCTATTTATAATCGTGCA+AGG | + | chr2_1:34922562-34922581 | None:intergenic | 30.0% | |
| GTATCTTACATTCTTACCAA+TGG | + | chr2_1:34922721-34922740 | None:intergenic | 30.0% | |
| ! | GCAATCTAAATTTTCAGAGA+TGG | - | chr2_1:34922849-34922868 | Msa0206160:intron | 30.0% |
| GAAATATCTGCATGTCAAAT+TGG | - | chr2_1:34922959-34922978 | Msa0206160:intron | 30.0% | |
| CTTTGTCAAAAAAGGAATCA+GGG | + | chr2_1:34922991-34923010 | None:intergenic | 30.0% | |
| ACTTTGTCAAAAAAGGAATC+AGG | + | chr2_1:34922992-34923011 | None:intergenic | 30.0% | |
| TTGTGATTTCTTTATCTCGA+TGG | + | chr2_1:34923026-34923045 | None:intergenic | 30.0% | |
| ATCCTATCATTACCAATTGT+GGG | + | chr2_1:34923703-34923722 | None:intergenic | 30.0% | |
| TATCCTATCATTACCAATTG+TGG | + | chr2_1:34923704-34923723 | None:intergenic | 30.0% | |
| ATTGCCTAGTATAAAAGTGA+TGG | - | chr2_1:34923802-34923821 | Msa0206160:CDS | 30.0% | |
| !! | TTCTCCATCACTTTTATACT+AGG | + | chr2_1:34923809-34923828 | None:intergenic | 30.0% |
| ! | TAGTATAAAAGTGATGGAGA+AGG | - | chr2_1:34923808-34923827 | Msa0206160:CDS | 30.0% |
| TGGAGAAGGATGTTAAATTA+TGG | - | chr2_1:34923822-34923841 | Msa0206160:CDS | 30.0% | |
| GGAGAAGGATGTTAAATTAT+GGG | - | chr2_1:34923823-34923842 | Msa0206160:CDS | 30.0% | |
| ACAAGACCATTATAATCAGT+GGG | + | chr2_1:34923987-34924006 | None:intergenic | 30.0% | |
| AACAAGACCATTATAATCAG+TGG | + | chr2_1:34923988-34924007 | None:intergenic | 30.0% | |
| TGCAAATATGCTCTACAGAT+TGG | - | chr2_1:34918435-34918454 | Msa0206160:CDS | 35.0% | |
| TCATCAGCTTCATATACAAC+AGG | + | chr2_1:34918468-34918487 | None:intergenic | 35.0% | |
| GTTGTATATGAAGCTGATGA+TGG | - | chr2_1:34918468-34918487 | Msa0206160:CDS | 35.0% | |
| CCCATGGAAAATCTGAAAAT+TGG | + | chr2_1:34918557-34918576 | None:intergenic | 35.0% | |
| ! | TCTTTTACAGAAGAATCCCA+TGG | + | chr2_1:34918573-34918592 | None:intergenic | 35.0% |
| CTGATGAAGATATGAAGTCA+TGG | - | chr2_1:34918712-34918731 | Msa0206160:intron | 35.0% | |
| CACAAATTATCATCTATGGG+GGG | + | chr2_1:34919283-34919302 | None:intergenic | 35.0% | |
| ! | AGATGATAATTTGTGAAGCC+CGG | - | chr2_1:34919288-34919307 | Msa0206160:CDS | 35.0% |
| !! | ATTTTACCGTATCGACGTAT+CGG | + | chr2_1:34919345-34919364 | None:intergenic | 35.0% |
| AAATCAAGATACAATACGGC+TGG | - | chr2_1:34919370-34919389 | Msa0206160:CDS | 35.0% | |
| AATCAAGATACAATACGGCT+GGG | - | chr2_1:34919371-34919390 | Msa0206160:CDS | 35.0% | |
| TGCTATACTATATCCGTTAG+TGG | - | chr2_1:34919580-34919599 | Msa0206160:intron | 35.0% | |
| GAAGCCCCGATATTTAAAAA+TGG | + | chr2_1:34919878-34919897 | None:intergenic | 35.0% | |
| ! | ACAGGTGATGATGAAACAAA+GGG | - | chr2_1:34919898-34919917 | Msa0206160:intron | 35.0% |
| CTGTGGACCATAAATTAATG+TGG | + | chr2_1:34920149-34920168 | None:intergenic | 35.0% | |
| AAAGATCTGGCCAAAAGAAA+AGG | - | chr2_1:34920526-34920545 | Msa0206160:intron | 35.0% | |
| AGAAAAGGAGAAGTTAGAGA+AGG | - | chr2_1:34920541-34920560 | Msa0206160:intron | 35.0% | |
| !! | TTAGACATGCATTGATTCGT+TGG | - | chr2_1:34920611-34920630 | Msa0206160:intron | 35.0% |
| !! | TAGACATGCATTGATTCGTT+GGG | - | chr2_1:34920612-34920631 | Msa0206160:intron | 35.0% |
| AGCAATTGAACTATCTACCT+TGG | - | chr2_1:34920643-34920662 | Msa0206160:intron | 35.0% | |
| ATTGAACTATCTACCTTGGT+TGG | - | chr2_1:34920647-34920666 | Msa0206160:intron | 35.0% | |
| AAGACAGTGCAAATAGCAAT+AGG | - | chr2_1:34920752-34920771 | Msa0206160:intron | 35.0% | |
| TGGTGCAAAAGGAAAAATTG+AGG | - | chr2_1:34920805-34920824 | Msa0206160:intron | 35.0% | |
| ! | CCACTCATAAAATTCAGGTT+GGG | + | chr2_1:34920936-34920955 | None:intergenic | 35.0% |
| TCAAACTAAGCCAATCGAAA+GGG | + | chr2_1:34921062-34921081 | None:intergenic | 35.0% | |
| ! | TAAATTTTCAGCTTACCCTC+CGG | - | chr2_1:34921193-34921212 | Msa0206160:intron | 35.0% |
| TAAAGTAACGCACGTAACTA+AGG | - | chr2_1:34921353-34921372 | Msa0206160:intron | 35.0% | |
| ATAAGCTGTTTATCCAAACG+GGG | - | chr2_1:34921899-34921918 | Msa0206160:intron | 35.0% | |
| CTTTGCATTGGGAAATATAG+TGG | - | chr2_1:34922197-34922216 | Msa0206160:intron | 35.0% | |
| TACCAATGGTGAAAGTAAAG+TGG | + | chr2_1:34922707-34922726 | None:intergenic | 35.0% | |
| ATTCTTGCCACAGGATATAA+AGG | - | chr2_1:34923115-34923134 | Msa0206160:intron | 35.0% | |
| GTTCAAGGATTTCTCTCTAT+AGG | - | chr2_1:34923194-34923213 | Msa0206160:intron | 35.0% | |
| ! | GGTGGTTTACTCAAGAATTT+TGG | + | chr2_1:34923366-34923385 | None:intergenic | 35.0% |
| TACAAAGGCAGAGATCAAAT+TGG | + | chr2_1:34923387-34923406 | None:intergenic | 35.0% | |
| ATATGTGTAAACCACCAAAC+TGG | + | chr2_1:34923615-34923634 | None:intergenic | 35.0% | |
| GATGTATTATTTGCCTGTAG+TGG | + | chr2_1:34923673-34923692 | None:intergenic | 35.0% | |
| !! | ATCCCACAATTGGTAATGAT+AGG | - | chr2_1:34923698-34923717 | Msa0206160:CDS | 35.0% |
| GTAATGATAGGATATGCTGA+GGG | - | chr2_1:34923710-34923729 | Msa0206160:CDS | 35.0% | |
| CTAATGAAATGAGATGCCAA+TGG | - | chr2_1:34923750-34923769 | Msa0206160:CDS | 35.0% | |
| CTAGAAAATGTGCTAACCAT+TGG | + | chr2_1:34923769-34923788 | None:intergenic | 35.0% | |
| ! | TGGTTAGCACATTTTCTAGA+TGG | - | chr2_1:34923770-34923789 | Msa0206160:CDS | 35.0% |
| AATTGATCCTTCTTTCTCCT+CGG | + | chr2_1:34923953-34923972 | None:intergenic | 35.0% | |
| AGAAGGATCAATTGTGCATA+TGG | - | chr2_1:34923960-34923979 | Msa0206160:CDS | 35.0% | |
| GAAGGATCAATTGTGCATAT+GGG | - | chr2_1:34923961-34923980 | Msa0206160:CDS | 35.0% | |
| GAGCATATTTGCAAGCAAGT+AGG | + | chr2_1:34918428-34918447 | None:intergenic | 40.0% | |
| !! | TATGAAGCTGATGATGGTGT+TGG | - | chr2_1:34918474-34918493 | Msa0206160:CDS | 40.0% |
| AAGTCATGGGAATTATGGAG+TGG | - | chr2_1:34918726-34918745 | Msa0206160:intron | 40.0% | |
| TGGGAATTATGGAGTGGTAA+TGG | - | chr2_1:34918732-34918751 | Msa0206160:intron | 40.0% | |
| !!! | AGTGGTAATGGCAGTAGTTT+TGG | - | chr2_1:34918744-34918763 | Msa0206160:intron | 40.0% |
| TGTAATATGCCATGTTCCCT+TGG | + | chr2_1:34918772-34918791 | None:intergenic | 40.0% | |
| TCCGTATCATATCTCGTATC+CGG | + | chr2_1:34919310-34919329 | None:intergenic | 40.0% | |
| ! | CGGATATAGTATAGCACTGA+TGG | + | chr2_1:34919576-34919595 | None:intergenic | 40.0% |
| TAATTGGGAAATATTGGGGC+AGG | - | chr2_1:34919686-34919705 | Msa0206160:CDS | 40.0% | |
| GATACTCTCCTGATACGTAT+CGG | - | chr2_1:34919731-34919750 | Msa0206160:CDS | 40.0% | |
| ATACTCTCCTGATACGTATC+GGG | - | chr2_1:34919732-34919751 | Msa0206160:CDS | 40.0% | |
| AATACTTCCCGATACGTATC+AGG | + | chr2_1:34919742-34919761 | None:intergenic | 40.0% | |
| ! | TGATACGTATCGGGAAGTAT+TGG | - | chr2_1:34919741-34919760 | Msa0206160:CDS | 40.0% |
| ATACTCTCCTGATACGTATC+AGG | - | chr2_1:34919732-34919751 | Msa0206160:CDS | 40.0% | |
| ! | TGATACGTATCAGGAAGTAC+CGG | - | chr2_1:34919810-34919829 | Msa0206160:intron | 40.0% |
| TTTAAATATCGGGGCTTCAC+AGG | - | chr2_1:34919880-34919899 | Msa0206160:intron | 40.0% | |
| ! | CACAGGTGATGATGAAACAA+AGG | - | chr2_1:34919897-34919916 | Msa0206160:intron | 40.0% |
| ! | GTGATGATGAAACAAAGGGA+TGG | - | chr2_1:34919902-34919921 | Msa0206160:intron | 40.0% |
| !! | AGACATGCATTGATTCGTTG+GGG | - | chr2_1:34920613-34920632 | Msa0206160:intron | 40.0% |
| TGGAAAATTCCAAGATGTGC+AGG | - | chr2_1:34920868-34920887 | Msa0206160:intron | 40.0% | |
| ! | CCCAACCTGAATTTTATGAG+TGG | - | chr2_1:34920933-34920952 | Msa0206160:intron | 40.0% |
| GCCACTCATAAAATTCAGGT+TGG | + | chr2_1:34920937-34920956 | None:intergenic | 40.0% | |
| GACAGCCACTCATAAAATTC+AGG | + | chr2_1:34920941-34920960 | None:intergenic | 40.0% | |
| AAACTAAGCCAATCGAAAGG+GGG | + | chr2_1:34921060-34921079 | None:intergenic | 40.0% | |
| CAAACTAAGCCAATCGAAAG+GGG | + | chr2_1:34921061-34921080 | None:intergenic | 40.0% | |
| CTCAAACTAAGCCAATCGAA+AGG | + | chr2_1:34921063-34921082 | None:intergenic | 40.0% | |
| ! | TGGCTTAGTTTGAGCTTATG+TGG | - | chr2_1:34921069-34921088 | Msa0206160:intron | 40.0% |
| ! | GGCTTAGTTTGAGCTTATGT+GGG | - | chr2_1:34921070-34921089 | Msa0206160:intron | 40.0% |
| GGAGGGTAAGCTGAAAATTT+AGG | + | chr2_1:34921194-34921213 | None:intergenic | 40.0% | |
| TCATAAGCTCCTTGTTAAGC+CGG | + | chr2_1:34921215-34921234 | None:intergenic | 40.0% | |
| GAAGTTGAGTTTGCACTCTT+AGG | + | chr2_1:34921925-34921944 | None:intergenic | 40.0% | |
| ! | AAAGGCCCAGAAGTTTTTAC+AGG | - | chr2_1:34922251-34922270 | Msa0206160:intron | 40.0% |
| ! | TTCTATGGATTACTCTGCCT+TGG | - | chr2_1:34922286-34922305 | Msa0206160:intron | 40.0% |
| ACCATTTGCATTTGCGCATT+CGG | + | chr2_1:34922393-34922412 | None:intergenic | 40.0% | |
| TCTCCCAGATTTCAACATTC+TGG | - | chr2_1:34922594-34922613 | Msa0206160:intron | 40.0% | |
| CTCCCAGATTTCAACATTCT+GGG | - | chr2_1:34922595-34922614 | Msa0206160:intron | 40.0% | |
| TGCCCAGAATGTTGAAATCT+GGG | + | chr2_1:34922600-34922619 | None:intergenic | 40.0% | |
| ATGCCCAGAATGTTGAAATC+TGG | + | chr2_1:34922601-34922620 | None:intergenic | 40.0% | |
| !!! | GAACTTTTAGTTCACAAGCC+CGG | - | chr2_1:34922655-34922674 | Msa0206160:intron | 40.0% |
| GTGAAAGTAAAGTGGCCAAA+AGG | + | chr2_1:34922699-34922718 | None:intergenic | 40.0% | |
| AAGTTGCCACTGAAGAAGTA+TGG | - | chr2_1:34922908-34922927 | Msa0206160:intron | 40.0% | |
| ACTAGTCCATACTTCTTCAG+TGG | + | chr2_1:34922917-34922936 | None:intergenic | 40.0% | |
| ! | AGCTTTAGCTTCTGCAAAGA+AGG | - | chr2_1:34923046-34923065 | Msa0206160:intron | 40.0% |
| GATGTAGTTATTCTTGCCAC+AGG | - | chr2_1:34923106-34923125 | Msa0206160:intron | 40.0% | |
| TTGGTCACCTTTATATCCTG+TGG | + | chr2_1:34923125-34923144 | None:intergenic | 40.0% | |
| AAAGGCAGAGATCAAATTGG+TGG | + | chr2_1:34923384-34923403 | None:intergenic | 40.0% | |
| AATCCATGGTAAACCACTAC+AGG | - | chr2_1:34923657-34923676 | Msa0206160:CDS | 40.0% | |
| GGTAATGATAGGATATGCTG+AGG | - | chr2_1:34923709-34923728 | Msa0206160:CDS | 40.0% | |
| ! | AGATCACGCATTGTTACTTG+TGG | - | chr2_1:34923884-34923903 | Msa0206160:CDS | 40.0% |
| ! | GCATTGTTACTTGTGGCATA+TGG | - | chr2_1:34923891-34923910 | Msa0206160:CDS | 40.0% |
| TAGACATGAAGTGTAATCCG+AGG | - | chr2_1:34923933-34923952 | Msa0206160:CDS | 40.0% | |
| ! | TATGGGCCCACTGATTATAA+TGG | - | chr2_1:34923978-34923997 | Msa0206160:exon | 40.0% |
| CACTTCAGCAGAATACATGT+TGG | - | chr2_1:34924017-34924036 | Msa0206160:five_prime_UTR | 40.0% | |
| TTCAGCAGAATACATGTTGG+AGG | - | chr2_1:34924020-34924039 | Msa0206160:five_prime_UTR | 40.0% | |
| TCAGCAGAATACATGTTGGA+GGG | - | chr2_1:34924021-34924040 | Msa0206160:five_prime_UTR | 40.0% | |
| TGATGCACTCAGATAGATGC+AGG | + | chr2_1:34918336-34918355 | None:intergenic | 45.0% | |
| AGAGTTGCAATTGTTGGTGC+AGG | - | chr2_1:34918393-34918412 | Msa0206160:CDS | 45.0% | |
| ATTGTTGGTGCAGGAATCAG+TGG | - | chr2_1:34918402-34918421 | Msa0206160:CDS | 45.0% | |
| ! | ATGATGGTGTTGGAGGACTA+TGG | - | chr2_1:34918484-34918503 | Msa0206160:CDS | 45.0% |
| !! | GGTAGGCTTGTTTTCGGTTT+TGG | + | chr2_1:34918536-34918555 | None:intergenic | 45.0% |
| !!! | TGGCAGTAGTTTTGGATCCA+AGG | - | chr2_1:34918752-34918771 | Msa0206160:intron | 45.0% |
| !!! | GGCAGTAGTTTTGGATCCAA+GGG | - | chr2_1:34918753-34918772 | Msa0206160:intron | 45.0% |
| !! | GTTTTGGATCCAAGGGAACA+TGG | - | chr2_1:34918760-34918779 | Msa0206160:intron | 45.0% |
| GGGAACATGGCATATTACAG+TGG | - | chr2_1:34918773-34918792 | Msa0206160:intron | 45.0% | |
| ! | AGCAACCGAGTTTTCCCTTT+CGG | - | chr2_1:34919251-34919270 | Msa0206160:CDS | 45.0% |
| CCGTATCATATCTCGTATCC+GGG | + | chr2_1:34919309-34919328 | None:intergenic | 45.0% | |
| CCCGGATACGAGATATGATA+CGG | - | chr2_1:34919306-34919325 | Msa0206160:CDS | 45.0% | |
| !! | GCACTGATGGTGCTCTTTTT+GGG | + | chr2_1:34919563-34919582 | None:intergenic | 45.0% |
| !!! | AGCACTGATGGTGCTCTTTT+TGG | + | chr2_1:34919564-34919583 | None:intergenic | 45.0% |
| GGAAATATTGGGGCAGGTAT+CGG | - | chr2_1:34919692-34919711 | Msa0206160:CDS | 45.0% | |
| GGTACTTCCTGATACGTATC+AGG | + | chr2_1:34919811-34919830 | None:intergenic | 45.0% | |
| !! | GATACGTATCAGGAAGTACC+GGG | - | chr2_1:34919811-34919830 | Msa0206160:intron | 45.0% |
| TGGTCCACAGATGTTCAACA+TGG | - | chr2_1:34920159-34920178 | Msa0206160:CDS | 45.0% | |
| CACACCATGTTGAACATCTG+TGG | + | chr2_1:34920166-34920185 | None:intergenic | 45.0% | |
| CACAGATGTTCAACATGGTG+TGG | - | chr2_1:34920164-34920183 | Msa0206160:CDS | 45.0% | |
| ACGCAATAGCATTCTGAGTC+AGG | - | chr2_1:34920201-34920220 | Msa0206160:intron | 45.0% | |
| !! | GACATGCATTGATTCGTTGG+GGG | - | chr2_1:34920614-34920633 | Msa0206160:intron | 45.0% |
| TCGAATTGATGTGCCAACCA+AGG | + | chr2_1:34920663-34920682 | None:intergenic | 45.0% | |
| ATGTCCGTATCATAGTCTGC+TGG | - | chr2_1:34920785-34920804 | Msa0206160:intron | 45.0% | |
| TGCACCAGCAGACTATGATA+CGG | + | chr2_1:34920792-34920811 | None:intergenic | 45.0% | |
| TCATAGTCTGCTGGTGCAAA+AGG | - | chr2_1:34920794-34920813 | Msa0206160:intron | 45.0% | |
| AACCAACTTGACACTCGTAC+AGG | - | chr2_1:34920983-34921002 | Msa0206160:intron | 45.0% | |
| TATTAAGGCCCCCTTTCGAT+TGG | - | chr2_1:34921049-34921068 | Msa0206160:intron | 45.0% | |
| GATCTAGAGAGAATCGAAGG+AGG | + | chr2_1:34921248-34921267 | None:intergenic | 45.0% | |
| GTGGATCTAGAGAGAATCGA+AGG | + | chr2_1:34921251-34921270 | None:intergenic | 45.0% | |
| ! | AAACTTCTGGGCCTTTTCCA+GGG | + | chr2_1:34922247-34922266 | None:intergenic | 45.0% |
| ! | AAAACTTCTGGGCCTTTTCC+AGG | + | chr2_1:34922248-34922267 | None:intergenic | 45.0% |
| AGCAGCAGTTTCTTTGTCCA+AGG | + | chr2_1:34922306-34922325 | None:intergenic | 45.0% | |
| AGAGTTACAGTAGTAGGCTC+AGG | - | chr2_1:34922344-34922363 | Msa0206160:intron | 45.0% | |
| AACATTCTGGGCATTCGTCT+CGG | - | chr2_1:34922607-34922626 | Msa0206160:intron | 45.0% | |
| !! | ACACTTCCTTCTTGGCCTTT+TGG | - | chr2_1:34922681-34922700 | Msa0206160:intron | 45.0% |
| ! | GGCCACTTTACTTTCACCAT+TGG | - | chr2_1:34922702-34922721 | Msa0206160:intron | 45.0% |
| TACAAAGACCGAGACCAGTT+TGG | - | chr2_1:34923598-34923617 | Msa0206160:CDS | 45.0% | |
| ! | GTAAACCACCAAACTGGTCT+CGG | + | chr2_1:34923609-34923628 | None:intergenic | 45.0% |
| TTGCCTGTAGTGGTTTACCA+TGG | + | chr2_1:34923663-34923682 | None:intergenic | 45.0% | |
| ATTACCAATTGTGGGATGCG+AGG | + | chr2_1:34923695-34923714 | None:intergenic | 45.0% | |
| GTGTAATCCGAGGAGAAAGA+AGG | - | chr2_1:34923943-34923962 | Msa0206160:CDS | 45.0% | |
| CAGCAGAATACATGTTGGAG+GGG | - | chr2_1:34924022-34924041 | Msa0206160:five_prime_UTR | 45.0% | |
| !!! | TAAAGTAAAAATTTAATTTA+TGG | + | chr2_1:34919997-34920016 | None:intergenic | 5.0% |
| !! | TAAATAATATATATAGAAAA+TGG | + | chr2_1:34920283-34920302 | None:intergenic | 5.0% |
| !! | GAAGCTGATGATGGTGTTGG+AGG | - | chr2_1:34918477-34918496 | Msa0206160:CDS | 50.0% |
| ! | ATGGTGTTGGAGGACTATGG+AGG | - | chr2_1:34918487-34918506 | Msa0206160:CDS | 50.0% |
| ! | AACCGAGTTTTCCCTTTCGG+TGG | - | chr2_1:34919254-34919273 | Msa0206160:CDS | 50.0% |
| CACCACCGAAAGGGAAAACT+CGG | + | chr2_1:34919259-34919278 | None:intergenic | 50.0% | |
| ! | ACTGCACCGATACGTCGATA+CGG | - | chr2_1:34919336-34919355 | Msa0206160:CDS | 50.0% |
| !! | AGGAAGTACCGGGAAGGTAT+CGG | - | chr2_1:34919821-34919840 | Msa0206160:intron | 50.0% |
| ! | ATCATGCACCGATACCTTCC+CGG | + | chr2_1:34919832-34919851 | None:intergenic | 50.0% |
| !! | ATGCATTGATTCGTTGGGGG+TGG | - | chr2_1:34920617-34920636 | Msa0206160:intron | 50.0% |
| GACCTGTACGAGTGTCAAGT+TGG | + | chr2_1:34920988-34921007 | None:intergenic | 50.0% | |
| AAGCTCCTTGTTAAGCCGGA+GGG | + | chr2_1:34921211-34921230 | None:intergenic | 50.0% | |
| TAAGCTCCTTGTTAAGCCGG+AGG | + | chr2_1:34921212-34921231 | None:intergenic | 50.0% | |
| GGGAGGAACTCAGGAATGTT+TGG | + | chr2_1:34922227-34922246 | None:intergenic | 50.0% | |
| AACATTCCTGAGTTCCTCCC+TGG | - | chr2_1:34922227-34922246 | Msa0206160:intron | 50.0% | |
| GCCGAATGCGCAAATGCAAA+TGG | - | chr2_1:34922389-34922408 | Msa0206160:intron | 50.0% | |
| !! | CCAAGAAGGAAGTGTTCTCC+GGG | + | chr2_1:34922676-34922695 | None:intergenic | 50.0% |
| !! | GCCAAGAAGGAAGTGTTCTC+CGG | + | chr2_1:34922677-34922696 | None:intergenic | 50.0% |
| AAGTGGCCAAAAGGCCAAGA+AGG | + | chr2_1:34922690-34922709 | None:intergenic | 50.0% | |
| AAAGACCGAGACCAGTTTGG+TGG | - | chr2_1:34923601-34923620 | Msa0206160:CDS | 50.0% | |
| ACATCCTCGCATCCCACAAT+TGG | - | chr2_1:34923688-34923707 | Msa0206160:CDS | 50.0% | |
| !! | CGTATCAGGAAGTACCGGGA+AGG | - | chr2_1:34919815-34919834 | Msa0206160:intron | 55.0% |
| GCTTACCCTCCGGCTTAACA+AGG | - | chr2_1:34921203-34921222 | Msa0206160:intron | 55.0% | |
| TTGCACTCTTAGGCCCCGTT+TGG | + | chr2_1:34921915-34921934 | None:intergenic | 55.0% | |
| ! | CCTTTTCCAGGGAGGAACTC+AGG | + | chr2_1:34922236-34922255 | None:intergenic | 55.0% |
| CCTGAGTTCCTCCCTGGAAA+AGG | - | chr2_1:34922233-34922252 | Msa0206160:intron | 55.0% | |
| CCCGGAGAACACTTCCTTCT+TGG | - | chr2_1:34922673-34922692 | Msa0206160:intron | 55.0% | |
| ATGGGGGGACACCACCGAAA+GGG | + | chr2_1:34919268-34919287 | None:intergenic | 60.0% | |
| TATGGGGGGACACCACCGAA+AGG | + | chr2_1:34919269-34919288 | None:intergenic | 60.0% | |
| GGGTGTGCACCTGCACATCT+TGG | + | chr2_1:34920880-34920899 | None:intergenic | 60.0% | |
| TGCACACCCTCAATCCCAGC+TGG | - | chr2_1:34920891-34920910 | Msa0206160:intron | 60.0% | |
| !! | TTCAGGTTGGGCGCAAAGCC+AGG | + | chr2_1:34920924-34920943 | None:intergenic | 60.0% |
| ! | CTTCTGGGCCTTTTCCAGGG+AGG | + | chr2_1:34922244-34922263 | None:intergenic | 60.0% |
| GCGGAGCCAGCTGGGATTGA+GGG | + | chr2_1:34920900-34920919 | None:intergenic | 65.0% | |
| AGCGGAGCCAGCTGGGATTG+AGG | + | chr2_1:34920901-34920920 | None:intergenic | 65.0% | |
| GTTGGGCGCAAAGCCAGGAG+CGG | + | chr2_1:34920919-34920938 | None:intergenic | 65.0% | |
| ! | ATCCCAGCTGGCTCCGCTCC+TGG | - | chr2_1:34920903-34920922 | Msa0206160:intron | 70.0% |
| AGCCAGGAGCGGAGCCAGCT+GGG | + | chr2_1:34920908-34920927 | None:intergenic | 70.0% | |
| AAGCCAGGAGCGGAGCCAGC+TGG | + | chr2_1:34920909-34920928 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 34918327 | 34924047 | 34918327 | ID=Msa0206160;Name=Msa0206160 |
| chr2_1 | mRNA | 34918327 | 34924047 | 34918327 | ID=Msa0206160-mRNA-1;Parent=Msa0206160;Name=Msa0206160-mRNA-1;_AED=0.07;_eAED=0.07;_QI=57|1|1|1|1|1|5|56|504 |
| chr2_1 | exon | 34918327 | 34918695 | 34918327 | ID=Msa0206160-mRNA-1:exon:11627;Parent=Msa0206160-mRNA-1 |
| chr2_1 | exon | 34919159 | 34919508 | 34919159 | ID=Msa0206160-mRNA-1:exon:11626;Parent=Msa0206160-mRNA-1 |
| chr2_1 | exon | 34919651 | 34919826 | 34919651 | ID=Msa0206160-mRNA-1:exon:11625;Parent=Msa0206160-mRNA-1 |
| chr2_1 | exon | 34919964 | 34920201 | 34919964 | ID=Msa0206160-mRNA-1:exon:11624;Parent=Msa0206160-mRNA-1 |
| chr2_1 | exon | 34923553 | 34924047 | 34923553 | ID=Msa0206160-mRNA-1:exon:11623;Parent=Msa0206160-mRNA-1 |
| chr2_1 | five_prime_UTR | 34923991 | 34924047 | 34923991 | ID=Msa0206160-mRNA-1:five_prime_utr;Parent=Msa0206160-mRNA-1 |
| chr2_1 | CDS | 34923553 | 34923990 | 34923553 | ID=Msa0206160-mRNA-1:cds;Parent=Msa0206160-mRNA-1 |
| chr2_1 | CDS | 34919964 | 34920201 | 34919964 | ID=Msa0206160-mRNA-1:cds;Parent=Msa0206160-mRNA-1 |
| chr2_1 | CDS | 34919651 | 34919826 | 34919651 | ID=Msa0206160-mRNA-1:cds;Parent=Msa0206160-mRNA-1 |
| chr2_1 | CDS | 34919159 | 34919508 | 34919159 | ID=Msa0206160-mRNA-1:cds;Parent=Msa0206160-mRNA-1 |
| chr2_1 | CDS | 34918383 | 34918695 | 34918383 | ID=Msa0206160-mRNA-1:cds;Parent=Msa0206160-mRNA-1 |
| chr2_1 | three_prime_UTR | 34918327 | 34918382 | 34918327 | ID=Msa0206160-mRNA-1:three_prime_utr;Parent=Msa0206160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
