Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0326280 | XP_024631713.2 | 92.070 | 517 | 41 | 0 | 1 | 517 | 1 | 517 | 0.0 | 979 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0326280 | sp|Q9LMA1|FMO1_ARATH | 42.197 | 519 | 279 | 11 | 4 | 512 | 12 | 519 | 5.20e-136 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0206080 | Msa0326280 | 0.891076 | 5.525817e-74 | -8.615850e-47 |
| Msa0206120 | Msa0326280 | 0.829759 | 4.301047e-55 | -8.615850e-47 |
| Msa0206130 | Msa0326280 | 0.867511 | 1.297169e-65 | -8.615850e-47 |
| Msa0206160 | Msa0326280 | 0.877378 | 6.592029e-69 | -8.615850e-47 |
| Msa0206180 | Msa0326280 | 0.823233 | 1.546670e-53 | -8.615850e-47 |
| Msa0206190 | Msa0326280 | 0.863877 | 1.818779e-64 | -8.615850e-47 |
| Msa0206200 | Msa0326280 | 0.931189 | 5.451675e-94 | -8.615850e-47 |
| Msa0249270 | Msa0326280 | 0.932384 | 9.237317e-95 | -8.615850e-47 |
| Msa0326270 | Msa0326280 | 0.870124 | 1.848807e-66 | -8.615850e-47 |
| Msa0326280 | Msa0382290 | 0.808262 | 3.376411e-50 | -8.615850e-47 |
| Msa0326280 | Msa0520730 | 0.807359 | 5.253177e-50 | -8.615850e-47 |
| Msa0326280 | Msa0774090 | 0.800229 | 1.589648e-48 | -8.615850e-47 |
| Msa0326280 | Msa0786970 | 0.808696 | 2.728759e-50 | -8.615850e-47 |
| Msa0326280 | Msa1051410 | 0.814927 | 1.200514e-51 | -8.615850e-47 |
| Msa0326280 | Msa1129920 | 0.801341 | 9.423649e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0326280 | MtrunA17_Chr2g0304721 | 92.070 | 517 | 41 | 0 | 1 | 517 | 1 | 517 | 0.0 | 979 |
| Msa0326280 | MtrunA17_Chr2g0305211 | 78.654 | 520 | 108 | 1 | 1 | 517 | 1 | 520 | 0.0 | 869 |
| Msa0326280 | MtrunA17_Chr2g0305231 | 78.654 | 520 | 108 | 1 | 1 | 517 | 1 | 520 | 0.0 | 869 |
| Msa0326280 | MtrunA17_Chr2g0304651 | 77.885 | 520 | 110 | 2 | 1 | 517 | 1 | 518 | 0.0 | 840 |
| Msa0326280 | MtrunA17_Chr2g0301661 | 40.741 | 513 | 293 | 8 | 4 | 511 | 13 | 519 | 6.08e-126 | 378 |
| Msa0326280 | MtrunA17_Chr2g0301471 | 41.131 | 513 | 291 | 8 | 4 | 511 | 13 | 519 | 6.12e-123 | 370 |
| Msa0326280 | MtrunA17_Chr4g0070101 | 41.365 | 498 | 265 | 12 | 27 | 511 | 36 | 519 | 5.95e-121 | 365 |
| Msa0326280 | MtrunA17_Chr4g0070111 | 40.780 | 282 | 162 | 4 | 233 | 512 | 1 | 279 | 1.16e-67 | 219 |
| Msa0326280 | MtrunA17_Chr2g0286701 | 39.574 | 235 | 137 | 4 | 1 | 233 | 10 | 241 | 6.21e-55 | 187 |
| Msa0326280 | MtrunA17_Chr4g0070121 | 42.995 | 207 | 103 | 3 | 27 | 225 | 36 | 235 | 1.22e-48 | 167 |
| Msa0326280 | MtrunA17_Chr2g0286681 | 41.584 | 101 | 58 | 1 | 288 | 388 | 19 | 118 | 7.83e-23 | 93.6 |
| Msa0326280 | MtrunA17_Chr2g0286671 | 39.604 | 101 | 60 | 1 | 411 | 511 | 1 | 100 | 1.93e-18 | 80.9 |
| Msa0326280 | MtrunA17_Chr1g0182991 | 26.330 | 376 | 209 | 18 | 7 | 376 | 27 | 340 | 5.34e-17 | 83.2 |
| Msa0326280 | MtrunA17_Chr8g0352461 | 25.692 | 253 | 131 | 7 | 4 | 232 | 3 | 222 | 2.86e-15 | 78.2 |
| Msa0326280 | MtrunA17_Chr1g0148801 | 25.926 | 378 | 205 | 16 | 7 | 376 | 18 | 328 | 4.02e-15 | 77.4 |
| Msa0326280 | MtrunA17_Chr7g0268621 | 25.722 | 381 | 209 | 19 | 2 | 374 | 3 | 317 | 4.48e-15 | 77.0 |
| Msa0326280 | MtrunA17_Chr8g0352481 | 25.692 | 253 | 130 | 7 | 4 | 232 | 3 | 221 | 7.70e-15 | 76.6 |
| Msa0326280 | MtrunA17_Chr7g0262591 | 25.000 | 376 | 212 | 18 | 6 | 376 | 25 | 335 | 1.71e-14 | 75.5 |
| Msa0326280 | MtrunA17_Chr8g0350371 | 25.849 | 383 | 205 | 18 | 2 | 374 | 3 | 316 | 2.18e-13 | 72.0 |
| Msa0326280 | MtrunA17_Chr4g0025641 | 27.111 | 225 | 128 | 8 | 1 | 223 | 12 | 202 | 3.84e-13 | 69.3 |
| Msa0326280 | MtrunA17_Chr5g0412881 | 24.611 | 386 | 206 | 16 | 2 | 374 | 3 | 316 | 1.05e-12 | 69.7 |
| Msa0326280 | MtrunA17_Chr3g0139441 | 26.862 | 376 | 208 | 18 | 7 | 376 | 41 | 355 | 3.29e-12 | 68.6 |
| Msa0326280 | MtrunA17_Chr3g0091441 | 27.165 | 254 | 132 | 11 | 3 | 229 | 11 | 238 | 6.87e-12 | 67.8 |
| Msa0326280 | MtrunA17_Chr1g0147221 | 24.868 | 378 | 212 | 20 | 7 | 376 | 44 | 357 | 2.37e-11 | 65.9 |
| Msa0326280 | MtrunA17_Chr3g0125691 | 23.457 | 405 | 234 | 18 | 1 | 396 | 3 | 340 | 4.66e-11 | 64.7 |
| Msa0326280 | MtrunA17_Chr6g0485621 | 24.011 | 379 | 218 | 17 | 7 | 376 | 34 | 351 | 9.38e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0326280 | AT1G19250.1 | 42.197 | 519 | 279 | 11 | 4 | 512 | 12 | 519 | 5.29e-137 | 407 |
| Msa0326280 | AT5G45180.1 | 38.028 | 497 | 251 | 13 | 4 | 492 | 12 | 459 | 6.82e-108 | 330 |
| Msa0326280 | AT4G28720.1 | 26.984 | 378 | 209 | 20 | 6 | 376 | 26 | 343 | 4.46e-17 | 84.0 |
| Msa0326280 | AT1G62560.2 | 26.772 | 254 | 127 | 9 | 3 | 229 | 11 | 232 | 3.61e-15 | 77.8 |
| Msa0326280 | AT1G48910.1 | 25.661 | 378 | 214 | 16 | 1 | 374 | 1 | 315 | 4.12e-15 | 77.4 |
| Msa0326280 | AT1G62560.1 | 26.772 | 254 | 127 | 9 | 3 | 229 | 11 | 232 | 4.83e-15 | 77.8 |
| Msa0326280 | AT5G43890.1 | 26.596 | 376 | 211 | 19 | 7 | 376 | 27 | 343 | 8.99e-15 | 77.0 |
| Msa0326280 | AT5G11320.1 | 25.984 | 381 | 199 | 16 | 7 | 376 | 19 | 327 | 2.28e-14 | 75.5 |
| Msa0326280 | AT5G11320.2 | 25.984 | 381 | 199 | 16 | 7 | 376 | 19 | 327 | 3.39e-14 | 74.7 |
| Msa0326280 | AT4G32540.2 | 26.190 | 378 | 206 | 18 | 7 | 376 | 23 | 335 | 3.93e-14 | 74.7 |
| Msa0326280 | AT5G07800.1 | 26.538 | 260 | 127 | 10 | 3 | 229 | 14 | 242 | 1.76e-13 | 73.2 |
| Msa0326280 | AT4G32540.1 | 27.823 | 248 | 133 | 12 | 7 | 251 | 23 | 227 | 1.80e-13 | 72.8 |
| Msa0326280 | AT1G65860.1 | 23.622 | 254 | 134 | 7 | 3 | 229 | 11 | 231 | 4.72e-13 | 71.6 |
| Msa0326280 | AT1G62620.2 | 25.896 | 251 | 132 | 8 | 5 | 229 | 13 | 235 | 6.70e-13 | 70.9 |
| Msa0326280 | AT1G62620.1 | 25.896 | 251 | 132 | 8 | 5 | 229 | 13 | 235 | 9.00e-13 | 70.9 |
| Msa0326280 | AT1G04610.1 | 26.984 | 378 | 208 | 17 | 7 | 376 | 39 | 356 | 1.21e-12 | 70.5 |
| Msa0326280 | AT1G63370.2 | 25.498 | 251 | 133 | 8 | 5 | 229 | 13 | 235 | 2.37e-12 | 68.6 |
| Msa0326280 | AT1G63370.1 | 25.498 | 251 | 133 | 8 | 5 | 229 | 13 | 235 | 2.97e-12 | 69.3 |
| Msa0326280 | AT4G13260.1 | 23.636 | 385 | 209 | 17 | 7 | 376 | 30 | 344 | 4.52e-12 | 68.6 |
| Msa0326280 | AT1G21430.1 | 26.005 | 373 | 209 | 17 | 5 | 374 | 9 | 317 | 5.00e-12 | 68.2 |
| Msa0326280 | AT4G13260.2 | 23.569 | 297 | 173 | 12 | 7 | 288 | 30 | 287 | 8.86e-12 | 66.6 |
Find 112 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCCTATCATTGCCAATTT+TGG | 0.050890 | 2_4:+35903894 | None:intergenic |
| TCTCCTAGATTTCAACATTT+TGG | 0.064568 | 2_4:-35904982 | Msa0326280:CDS |
| TTGAACTGTCAATGTAATTT+TGG | 0.131877 | 2_4:+35904426 | None:intergenic |
| AATAACTACATCTGTTTCTA+AGG | 0.224263 | 2_4:+35904508 | None:intergenic |
| TAGTCTTATTATTTACAAAA+TGG | 0.231432 | 2_4:-35908244 | Msa0326280:exon |
| CCCGGAGAACACTTCCTTCT+TGG | 0.233331 | 2_4:-35904903 | Msa0326280:CDS |
| ACACTTCCTTCTTGGCCTTT+TGG | 0.237410 | 2_4:-35904895 | Msa0326280:CDS |
| TGGAGAAGGATGTTAAATTA+TGG | 0.260934 | 2_4:-35903773 | Msa0326280:CDS |
| CCCAAGGAAAATCTGAAAAT+TGG | 0.266448 | 2_4:+35908055 | None:intergenic |
| AGGTAAGGTTATGCATTCTA+TGG | 0.272924 | 2_4:-35905271 | Msa0326280:CDS |
| GAAAATTGGTATGCTTGTTT+TGG | 0.274150 | 2_4:+35908069 | None:intergenic |
| ACATCCTCGCATCCCAAAAT+TGG | 0.284230 | 2_4:-35903907 | Msa0326280:CDS |
| GAAATATCTGCATGTCAAAT+TGG | 0.294249 | 2_4:-35904644 | Msa0326280:CDS |
| TCAGCAGAATACATGGTAAT+TGG | 0.303318 | 2_4:-35903513 | Msa0326280:three_prime_UTR |
| TACCTTTGTTGAGAAATTCT+TGG | 0.304695 | 2_4:+35907807 | None:intergenic |
| GAATCTTATGTAAGGAATAA+TGG | 0.308729 | 2_4:+35907957 | None:intergenic |
| ATATGAAGTCATGGGAATTA+TGG | 0.316758 | 2_4:-35907888 | Msa0326280:CDS |
| TTAGTTTATTGACTCGTCTA+TGG | 0.318799 | 2_4:-35903297 | Msa0326280:three_prime_UTR |
| TTTGTTTATGTTATAACATA+TGG | 0.320348 | 2_4:-35903267 | Msa0326280:three_prime_UTR |
| GCGGAGCTCTTTGAACCATA+TGG | 0.330950 | 2_4:-35903621 | Msa0326280:CDS |
| TAAATAATAAGACTAATTAC+TGG | 0.331527 | 2_4:+35908252 | None:intergenic |
| AAAATTACATTGACAGTTCA+AGG | 0.349499 | 2_4:-35904424 | Msa0326280:CDS |
| CAATATATAGCTTTATCCTT+TGG | 0.355651 | 2_4:-35903425 | Msa0326280:three_prime_UTR |
| TCTTGAAGAAAACTATGATT+AGG | 0.356221 | 2_4:+35904665 | None:intergenic |
| CTTTGCATTGGGAAATATAG+TGG | 0.362241 | 2_4:-35905345 | Msa0326280:CDS |
| ACCATTTGCATCTGCGCATT+CGG | 0.365561 | 2_4:+35905152 | None:intergenic |
| GAAACCAGCGCGCAGTTCTA+TGG | 0.366149 | 2_4:+35905003 | None:intergenic |
| ATTCTTGCCACAGGATATAA+AGG | 0.366577 | 2_4:-35904488 | Msa0326280:CDS |
| AATAAGAGAGTTACAGTAGT+AGG | 0.371604 | 2_4:-35905204 | Msa0326280:CDS |
| AGTGGTAATGGATGTCCTTT+TGG | 0.374311 | 2_4:-35907865 | Msa0326280:CDS |
| TGCAAATATGCTCTACAGAT+TGG | 0.376558 | 2_4:-35908174 | Msa0326280:CDS |
| GGGAGGAACTCTGGAATGTT+TGG | 0.377591 | 2_4:+35905318 | None:intergenic |
| TAGCACACCTCTAAACAAAA+AGG | 0.384966 | 2_4:+35903553 | None:intergenic |
| TGCCCAAAATGTTGAAATCT+AGG | 0.386822 | 2_4:+35904979 | None:intergenic |
| GTTATTGATATTGATTATGT+TGG | 0.393997 | 2_4:-35907925 | Msa0326280:CDS |
| GGAGAAGGATGTTAAATTAT+GGG | 0.394999 | 2_4:-35903772 | Msa0326280:CDS |
| TTGGAATTGAATCTTATGTA+AGG | 0.401516 | 2_4:+35907949 | None:intergenic |
| GCCAAGAAGGAAGTGTTCTC+CGG | 0.407386 | 2_4:+35904902 | None:intergenic |
| TTCTATGGATTACTCTTCCT+TGG | 0.411045 | 2_4:-35905256 | Msa0326280:CDS |
| AAGTTGCCACTGAAGAAGTA+TGG | 0.417922 | 2_4:-35904695 | Msa0326280:CDS |
| GTTCAAGGATTTCTCTCTAT+AGG | 0.419814 | 2_4:-35904409 | Msa0326280:intron |
| TCTAGAACTTGCTTATTACT+TGG | 0.420077 | 2_4:+35908009 | None:intergenic |
| TTGTTGAAACATATCTGAAA+TGG | 0.425780 | 2_4:-35904718 | Msa0326280:CDS |
| AGCTTTAGCTTCTGCAAAGA+AGG | 0.430511 | 2_4:-35904557 | Msa0326280:CDS |
| CGGAGCTCTTTGAACCATAT+GGG | 0.433353 | 2_4:-35903620 | Msa0326280:CDS |
| TTATAATCAGTGGGCCCATA+TGG | 0.433595 | 2_4:+35903606 | None:intergenic |
| GCATTGTTACTTGTGGCATA+TGG | 0.438868 | 2_4:-35903704 | Msa0326280:CDS |
| ATAATCAATATCAATAACTT+TGG | 0.441168 | 2_4:+35907930 | None:intergenic |
| ATGATGGTGTTGGAGGACTA+TGG | 0.447006 | 2_4:-35908125 | Msa0326280:CDS |
| AGTTTGTTATTCTTTGCATT+GGG | 0.451815 | 2_4:-35905356 | Msa0326280:CDS |
| GAGTTTGTTATTCTTTGCAT+TGG | 0.462117 | 2_4:-35905357 | Msa0326280:CDS |
| TTGTGATTTCTTTATCTCGA+TGG | 0.463038 | 2_4:+35904580 | None:intergenic |
| TGTAATATGCCATGTTCCCT+TGG | 0.468200 | 2_4:+35907840 | None:intergenic |
| GACGAGTCAATAAACTAAGA+AGG | 0.469643 | 2_4:+35903302 | None:intergenic |
| TGGGAATTATGGAGTGGTAA+TGG | 0.469776 | 2_4:-35907877 | Msa0326280:CDS |
| CCAGAGTTCCTCCCTGGAAA+AGG | 0.479687 | 2_4:-35905309 | Msa0326280:CDS |
| TATGGGCCCACTGATTATAA+TGG | 0.482729 | 2_4:-35903603 | Msa0326280:CDS |
| GGCCACCTTACTATCACCAT+TGG | 0.485362 | 2_4:-35904874 | Msa0326280:intron |
| AAAGTTTGCTATAAATGAAA+AGG | 0.487165 | 2_4:+35903332 | None:intergenic |
| TCTTACCAATGGTGATAGTA+AGG | 0.489855 | 2_4:+35904869 | None:intergenic |
| AGAGTTGCAATTGTTGGTGC+AGG | 0.491948 | 2_4:-35908216 | Msa0326280:CDS |
| AACATTCCAGAGTTCCTCCC+TGG | 0.496220 | 2_4:-35905315 | Msa0326280:CDS |
| TCATCAGCTTCATATACAAC+AGG | 0.497177 | 2_4:+35908144 | None:intergenic |
| AACAAGACCATTATAATCAG+TGG | 0.502752 | 2_4:+35903596 | None:intergenic |
| ATCCCAAAATTGGCAATGAT+AGG | 0.503683 | 2_4:-35903897 | Msa0326280:CDS |
| AGAGTTACAGTAGTAGGCTC+AGG | 0.504894 | 2_4:-35905198 | Msa0326280:CDS |
| AAAAGACCCTTCTTTCTCCT+CGG | 0.506769 | 2_4:+35903645 | None:intergenic |
| CTAGAAAATGTGCTAACCAT+TGG | 0.509768 | 2_4:+35903829 | None:intergenic |
| ATGGTAATTGGAGGGGTGCA+TGG | 0.512734 | 2_4:-35903501 | Msa0326280:three_prime_UTR |
| CATGTTCCCTTGGAGCCAAA+AGG | 0.521090 | 2_4:+35907850 | None:intergenic |
| TATGTTATAACATAAACAAA+AGG | 0.522704 | 2_4:+35903270 | None:intergenic |
| GTGATAGTAAGGTGGCCAAA+AGG | 0.527800 | 2_4:+35904880 | None:intergenic |
| TTGGTCACCTTTATATCCTG+TGG | 0.530010 | 2_4:+35904481 | None:intergenic |
| GATGTAGTTATTCTTGCCAC+AGG | 0.531258 | 2_4:-35904497 | Msa0326280:CDS |
| CTGATGAAGATATGAAGTCA+TGG | 0.535713 | 2_4:-35907897 | Msa0326280:CDS |
| TCTCACTTCAGCAGAATACA+TGG | 0.541686 | 2_4:-35903520 | Msa0326280:three_prime_UTR |
| TATGAAGCTGATGATGGTGT+TGG | 0.543117 | 2_4:-35908135 | Msa0326280:CDS |
| TGATGAACTCAGATAGATGC+AGG | 0.543614 | 2_4:+35908288 | None:intergenic |
| AGGTGGCCAAAAGGCCAAGA+AGG | 0.545267 | 2_4:+35904889 | None:intergenic |
| CCAAGAAGGAAGTGTTCTCC+GGG | 0.546254 | 2_4:+35904903 | None:intergenic |
| ATAACTACATCTGTTTCTAA+GGG | 0.546830 | 2_4:+35904509 | None:intergenic |
| GCCGAATGCGCAGATGCAAA+TGG | 0.549258 | 2_4:-35905153 | Msa0326280:intron |
| GCAGAATACATGGTAATTGG+AGG | 0.551730 | 2_4:-35903510 | Msa0326280:three_prime_UTR |
| GTGTAATCCGAGGAGAAAGA+AGG | 0.551929 | 2_4:-35903652 | Msa0326280:CDS |
| GTTGTATATGAAGCTGATGA+TGG | 0.564559 | 2_4:-35908141 | Msa0326280:CDS |
| GAAGCTGATGATGGTGTTGG+AGG | 0.565452 | 2_4:-35908132 | Msa0326280:CDS |
| ATTGCCTAGTATAAAAGTGA+TGG | 0.568840 | 2_4:-35903793 | Msa0326280:CDS |
| CAGAATACATGGTAATTGGA+GGG | 0.572921 | 2_4:-35903509 | Msa0326280:three_prime_UTR |
| TACCAAGAATTTCTCAACAA+AGG | 0.578314 | 2_4:-35907809 | Msa0326280:intron |
| ACGAGTCAATAAACTAAGAA+GGG | 0.580449 | 2_4:+35903303 | None:intergenic |
| TGATGAAGATATGAAGTCAT+GGG | 0.593792 | 2_4:-35907896 | Msa0326280:CDS |
| GGCAATGATAGGATATGCTG+AGG | 0.603017 | 2_4:-35903886 | Msa0326280:CDS |
| AGATCATGCATTGTTACTTG+TGG | 0.603581 | 2_4:-35903711 | Msa0326280:CDS |
| AGAATACATGGTAATTGGAG+GGG | 0.618236 | 2_4:-35903508 | Msa0326280:three_prime_UTR |
| TAGTATAAAAGTGATGGAGA+AGG | 0.619337 | 2_4:-35903787 | Msa0326280:CDS |
| GTTCTATGGATAATCGTGCA+AGG | 0.619433 | 2_4:+35905017 | None:intergenic |
| AATAATGACAAATAAACCAA+AGG | 0.621111 | 2_4:+35903409 | None:intergenic |
| GAGCATATTTGCAAGCAAGT+AGG | 0.621227 | 2_4:+35908184 | None:intergenic |
| TTCTATGGATAATCGTGCAA+GGG | 0.621581 | 2_4:+35905018 | None:intergenic |
| ATTGTTGGTGCAGGAATCAG+TGG | 0.624826 | 2_4:-35908207 | Msa0326280:CDS |
| TTATCCATAGAACTGCGCGC+TGG | 0.626391 | 2_4:-35905007 | Msa0326280:CDS |
| ACAAGACCATTATAATCAGT+GGG | 0.632491 | 2_4:+35903597 | None:intergenic |
| TGTAATCCGAGGAGAAAGAA+GGG | 0.645189 | 2_4:-35903651 | Msa0326280:CDS |
| ACTAGTCCATACTTCTTCAG+TGG | 0.645916 | 2_4:+35904689 | None:intergenic |
| GAGACATGAAGTGTAATCCG+AGG | 0.647245 | 2_4:-35903662 | Msa0326280:CDS |
| TAGAGAAAGCACAACACTAG+TGG | 0.649415 | 2_4:-35903471 | Msa0326280:three_prime_UTR |
| CTAATGAAATGAGATGCCAA+TGG | 0.660576 | 2_4:-35903845 | Msa0326280:CDS |
| TACCAATGGTGATAGTAAGG+TGG | 0.665277 | 2_4:+35904872 | None:intergenic |
| AAGTCATGGGAATTATGGAG+TGG | 0.671476 | 2_4:-35907883 | Msa0326280:CDS |
| GGGAACATGGCATATTACAG+TGG | 0.699925 | 2_4:-35907836 | Msa0326280:CDS |
| GCAATGATAGGATATGCTGA+GGG | 0.702690 | 2_4:-35903885 | Msa0326280:CDS |
| ATGGTGTTGGAGGACTATGG+AGG | 0.798552 | 2_4:-35908122 | Msa0326280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTAAAATTGTGTTTTTA+TGG | - | chr2_4:35904116-35904135 | Msa0326280:intron | 10.0% |
| !!! | TTTGTATCAAATTTTTAAAT+TGG | - | chr2_4:35904328-35904347 | Msa0326280:intron | 10.0% |
| !!! | TTCTCAATTTTTTTATAATA+AGG | - | chr2_4:35904665-35904684 | Msa0326280:CDS | 10.0% |
| !!! | TTAAAACTTTTAAAACATAA+CGG | + | chr2_4:35905655-35905674 | None:intergenic | 10.0% |
| !!! | TAAAATCTAAAATAAACATA+AGG | - | chr2_4:35905975-35905994 | Msa0326280:intron | 10.0% |
| !!! | AAAATCTAAAATAAACATAA+GGG | - | chr2_4:35905976-35905995 | Msa0326280:intron | 10.0% |
| !! | TAAATAATAAGACTAATTAC+TGG | + | chr2_4:35903304-35903323 | None:intergenic | 15.0% |
| !!! | TAGTCTTATTATTTACAAAA+TGG | - | chr2_4:35903309-35903328 | Msa0326280:three_prime_UTR | 15.0% |
| !! | ATAATCAATATCAATAACTT+TGG | + | chr2_4:35903626-35903645 | None:intergenic | 15.0% |
| !!! | TTCATATTTCATTTTCTTTT+TGG | - | chr2_4:35903811-35903830 | Msa0326280:CDS | 15.0% |
| !!! | AATTTTTTTTCAGGATAATT+GGG | + | chr2_4:35904169-35904188 | None:intergenic | 15.0% |
| !!! | AAATTTTTTTTCAGGATAAT+TGG | + | chr2_4:35904170-35904189 | None:intergenic | 15.0% |
| !!! | ATTGCTTTAAATTTTTTTTC+AGG | + | chr2_4:35904178-35904197 | None:intergenic | 15.0% |
| !! | TTTGACAAGAAATAATATTT+AGG | - | chr2_4:35904197-35904216 | Msa0326280:intron | 15.0% |
| !! | TTGACAAGAAATAATATTTA+GGG | - | chr2_4:35904198-35904217 | Msa0326280:intron | 15.0% |
| !! | TTTATATCAAATTCTCAAAT+TGG | + | chr2_4:35904624-35904643 | None:intergenic | 15.0% |
| !! | AATTGAGAAAATTATCAAAT+TGG | + | chr2_4:35904654-35904673 | None:intergenic | 15.0% |
| !! | GAAAATTGTACATTTAATAT+AGG | + | chr2_4:35904884-35904903 | None:intergenic | 15.0% |
| !!! | TTATAACCAAAAATTGTTTT+AGG | - | chr2_4:35905169-35905188 | Msa0326280:CDS | 15.0% |
| !! | AAACCAAAAGTTAATATATT+CGG | + | chr2_4:35905588-35905607 | None:intergenic | 15.0% |
| !! | TTAAAACCTAAAATACATAA+TGG | + | chr2_4:35905626-35905645 | None:intergenic | 15.0% |
| !!! | ATGTTTTAAAAGTTTTAAGT+TGG | - | chr2_4:35905657-35905676 | Msa0326280:intron | 15.0% |
| !!! | TTAAAAACTTTAAAACGTAA+GGG | + | chr2_4:35905684-35905703 | None:intergenic | 15.0% |
| !!! | TTGAAACTTTTAAAACATAA+GGG | - | chr2_4:35905916-35905935 | Msa0326280:intron | 15.0% |
| !!! | GTTTATTTTAGATTTTAAGT+TGG | + | chr2_4:35905972-35905991 | None:intergenic | 15.0% |
| !! | TCTTACAAAAACAAATAAAT+TGG | + | chr2_4:35906747-35906766 | None:intergenic | 15.0% |
| !!! | TGAATATGCTTTTAAATTTT+TGG | + | chr2_4:35907094-35907113 | None:intergenic | 15.0% |
| !!! | TATGTTTTATATGTATTTGT+AGG | + | chr2_4:35907228-35907247 | None:intergenic | 15.0% |
| !!! | AATATTCCAGAAAATTTTAT+TGG | - | chr2_4:35907819-35907838 | Msa0326280:CDS | 15.0% |
| !! | TATGTTATAACATAAACAAA+AGG | + | chr2_4:35908286-35908305 | None:intergenic | 15.0% |
| !! | TTTGTTTATGTTATAACATA+TGG | - | chr2_4:35908286-35908305 | Msa0326280:five_prime_UTR | 15.0% |
| !!! | GTTATTGATATTGATTATGT+TGG | - | chr2_4:35903628-35903647 | Msa0326280:CDS | 20.0% |
| !! | TTTCATAATTACAAATGTGT+TGG | - | chr2_4:35903838-35903857 | Msa0326280:CDS | 20.0% |
| !! | AGAAACATTAGAGATAAATA+AGG | - | chr2_4:35903897-35903916 | Msa0326280:CDS | 20.0% |
| !! | GAAACATTAGAGATAAATAA+GGG | - | chr2_4:35903898-35903917 | Msa0326280:CDS | 20.0% |
| !!! | CTCTAGTAAAACTATATTTT+GGG | + | chr2_4:35903971-35903990 | None:intergenic | 20.0% |
| !!! | TCTCTAGTAAAACTATATTT+TGG | + | chr2_4:35903972-35903991 | None:intergenic | 20.0% |
| !!! | CTCTAGTAAAACTATATTTT+GGG | + | chr2_4:35903971-35903990 | None:intergenic | 20.0% |
| !!! | TCTCTAGTAAAACTATATTT+TGG | + | chr2_4:35903972-35903991 | None:intergenic | 20.0% |
| !!! | CAATTTCACAATTTTAACAA+AGG | - | chr2_4:35904091-35904110 | Msa0326280:intron | 20.0% |
| !!! | ATTTTATGGTATCACTATAA+CGG | + | chr2_4:35904712-35904731 | None:intergenic | 20.0% |
| !!! | TTTATTTTAGATAGAAGAGA+TGG | - | chr2_4:35904929-35904948 | Msa0326280:CDS | 20.0% |
| !!! | TAAGCAAAAATTCACTTTTT+AGG | + | chr2_4:35905257-35905276 | None:intergenic | 20.0% |
| !!! | TTTGATCCATTATGTATTTT+AGG | - | chr2_4:35905617-35905636 | Msa0326280:intron | 20.0% |
| !!! | ATGTATTTTAGGTTTTAAGT+TGG | - | chr2_4:35905628-35905647 | Msa0326280:intron | 20.0% |
| !!! | CTTAAAAACTTTAAAACGTA+AGG | + | chr2_4:35905685-35905704 | None:intergenic | 20.0% |
| !!! | ATGTTTTAAAAGTTTCAAGT+TGG | + | chr2_4:35905914-35905933 | None:intergenic | 20.0% |
| !!! | CTTGAAACTTTTAAAACATA+AGG | - | chr2_4:35905915-35905934 | Msa0326280:intron | 20.0% |
| !!! | TTGAAACTTTTAAGACATAA+AGG | - | chr2_4:35905945-35905964 | Msa0326280:intron | 20.0% |
| !!! | TTCTTTTACTTTGTCAAAAA+AGG | + | chr2_4:35906949-35906968 | None:intergenic | 20.0% |
| !!! | TTTTTTGACAAAGTAAAAGA+AGG | - | chr2_4:35906948-35906967 | Msa0326280:intron | 20.0% |
| !!! | TCAATGTAATTTTGGAATAT+TGG | + | chr2_4:35907122-35907141 | None:intergenic | 20.0% |
| !! | CAAATCATACATAAGAAAAT+AGG | + | chr2_4:35907203-35907222 | None:intergenic | 20.0% |
| !!! | CTATTTTCTTATGTATGATT+TGG | - | chr2_4:35907201-35907220 | Msa0326280:intron | 20.0% |
| !!! | AATTTAAGATTAGCTTACAA+AGG | + | chr2_4:35907342-35907361 | None:intergenic | 20.0% |
| !! | TTGAAATATTAATAGAGTCA+AGG | + | chr2_4:35907368-35907387 | None:intergenic | 20.0% |
| !! | TGTAACAAAAACATAGATAA+AGG | + | chr2_4:35907434-35907453 | None:intergenic | 20.0% |
| !! | AAATATGTAAACCACTAAAT+TGG | + | chr2_4:35907555-35907574 | None:intergenic | 20.0% |
| !! | AAATTCTCTATACTAATCTA+TGG | - | chr2_4:35907601-35907620 | Msa0326280:intron | 20.0% |
| !! | AATAATGACAAATAAACCAA+AGG | + | chr2_4:35908147-35908166 | None:intergenic | 20.0% |
| !!! | AAAGTTTGCTATAAATGAAA+AGG | + | chr2_4:35908224-35908243 | None:intergenic | 20.0% |
| !!! | AAAATTGGTATGCTTGTTTT+GGG | + | chr2_4:35903486-35903505 | None:intergenic | 25.0% |
| ! | GAATCTTATGTAAGGAATAA+TGG | + | chr2_4:35903599-35903618 | None:intergenic | 25.0% |
| ! | TTGGAATTGAATCTTATGTA+AGG | + | chr2_4:35903607-35903626 | None:intergenic | 25.0% |
| ! | AGAGATAAATAAGGGAAATA+TGG | - | chr2_4:35903906-35903925 | Msa0326280:CDS | 25.0% |
| !! | ACCACAATAAAATTTTTCTC+TGG | - | chr2_4:35904065-35904084 | Msa0326280:intron | 25.0% |
| !! | ACCAGAGAAAAATTTTATTG+TGG | + | chr2_4:35904069-35904088 | None:intergenic | 25.0% |
| !! | TCTAGAGTAAATCATCAAAT+TGG | - | chr2_4:35904297-35904316 | Msa0326280:intron | 25.0% |
| ! | TTCTCAAATGTTTCTTAGAT+TGG | - | chr2_4:35904389-35904408 | Msa0326280:intron | 25.0% |
| ! | TACAAAACATCTAATAGAGT+CGG | + | chr2_4:35904418-35904437 | None:intergenic | 25.0% |
| !! | AATGTCTTTTGGATCTTATT+TGG | + | chr2_4:35904459-35904478 | None:intergenic | 25.0% |
| !! | GTTAATGACATAATGTCTTT+TGG | + | chr2_4:35904470-35904489 | None:intergenic | 25.0% |
| !! | GTCTTTTGGATATTATTTAG+TGG | + | chr2_4:35904492-35904511 | None:intergenic | 25.0% |
| ! | GCTCTATTAATAACTCAAAA+TGG | + | chr2_4:35904595-35904614 | None:intergenic | 25.0% |
| ! | TGAGCTATACTATTAAGAAA+AGG | - | chr2_4:35904786-35904805 | Msa0326280:intron | 25.0% |
| ! | GAGCTATACTATTAAGAAAA+GGG | - | chr2_4:35904787-35904806 | Msa0326280:intron | 25.0% |
| ! | AGTTTCTAAATTTCTGTCTT+TGG | - | chr2_4:35904966-35904985 | Msa0326280:CDS | 25.0% |
| ! | ATTATCAACAAATCACAATG+TGG | + | chr2_4:35905096-35905115 | None:intergenic | 25.0% |
| !!! | TTTTTGGTTATAATAGTGAC+CGG | + | chr2_4:35905162-35905181 | None:intergenic | 25.0% |
| !! | GATGAACCTAAAACAATTTT+TGG | + | chr2_4:35905178-35905197 | None:intergenic | 25.0% |
| ! | TTAAACTCAATATCATGTTG+CGG | + | chr2_4:35905750-35905769 | None:intergenic | 25.0% |
| !! | ATGTCTTAAAAGTTTCAAGT+TGG | + | chr2_4:35905943-35905962 | None:intergenic | 25.0% |
| ! | AAGAGTTTACAAGGATATAT+TGG | + | chr2_4:35906034-35906053 | None:intergenic | 25.0% |
| ! | ACAAAGTTAAAGAGTTTACA+AGG | + | chr2_4:35906043-35906062 | None:intergenic | 25.0% |
| ! | TAAAGATTAACATGCTATCA+TGG | - | chr2_4:35906097-35906116 | Msa0326280:intron | 25.0% |
| ! | TAGTATTGTTGTAATGCAAA+GGG | + | chr2_4:35906135-35906154 | None:intergenic | 25.0% |
| ! | ATAGTATTGTTGTAATGCAA+AGG | + | chr2_4:35906136-35906155 | None:intergenic | 25.0% |
| ! | GACTGAATATTTACAAAAAC+AGG | - | chr2_4:35906162-35906181 | Msa0326280:intron | 25.0% |
| !!! | AGTTTGTTATTCTTTGCATT+GGG | - | chr2_4:35906197-35906216 | Msa0326280:intron | 25.0% |
| ! | TTGTTGAAACATATCTGAAA+TGG | - | chr2_4:35906835-35906854 | Msa0326280:intron | 25.0% |
| ! | TCTTGAAGAAAACTATGATT+AGG | + | chr2_4:35906891-35906910 | None:intergenic | 25.0% |
| !!! | ATAACTACATCTGTTTCTAA+GGG | + | chr2_4:35907047-35907066 | None:intergenic | 25.0% |
| !!! | AATAACTACATCTGTTTCTA+AGG | + | chr2_4:35907048-35907067 | None:intergenic | 25.0% |
| !! | TTGAACTGTCAATGTAATTT+TGG | + | chr2_4:35907130-35907149 | None:intergenic | 25.0% |
| ! | AAAATTACATTGACAGTTCA+AGG | - | chr2_4:35907129-35907148 | Msa0326280:intron | 25.0% |
| !! | TAGTGGTTTACATATTTTCT+AGG | - | chr2_4:35907558-35907577 | Msa0326280:intron | 25.0% |
| !! | TGATCTCCAATAAAATTTTC+TGG | + | chr2_4:35907828-35907847 | None:intergenic | 25.0% |
| !!! | TTATGATCCTTTTTGTTTAG+AGG | - | chr2_4:35907993-35908012 | Msa0326280:CDS | 25.0% |
| !!! | CAATATATAGCTTTATCCTT+TGG | - | chr2_4:35908128-35908147 | Msa0326280:CDS | 25.0% |
| GAAAAAAGAGTTGCAATTGT+TGG | - | chr2_4:35903331-35903350 | Msa0326280:three_prime_UTR | 30.0% | |
| ! | GAAAATTGGTATGCTTGTTT+TGG | + | chr2_4:35903487-35903506 | None:intergenic | 30.0% |
| ! | ACCAATTTTCAGATTTTCCT+TGG | - | chr2_4:35903497-35903516 | Msa0326280:three_prime_UTR | 30.0% |
| ! | CCAATTTTCAGATTTTCCTT+GGG | - | chr2_4:35903498-35903517 | Msa0326280:three_prime_UTR | 30.0% |
| ! | TCTAGAACTTGCTTATTACT+TGG | + | chr2_4:35903547-35903566 | None:intergenic | 30.0% |
| TGATGAAGATATGAAGTCAT+GGG | - | chr2_4:35903657-35903676 | Msa0326280:CDS | 30.0% | |
| ATATGAAGTCATGGGAATTA+TGG | - | chr2_4:35903665-35903684 | Msa0326280:CDS | 30.0% | |
| TACCAAGAATTTCTCAACAA+AGG | - | chr2_4:35903744-35903763 | Msa0326280:CDS | 30.0% | |
| TACCTTTGTTGAGAAATTCT+TGG | + | chr2_4:35903749-35903768 | None:intergenic | 30.0% | |
| TTTGTTTCATTCTCACCTAT+GGG | + | chr2_4:35904261-35904280 | None:intergenic | 30.0% | |
| ATAGGTGAGAATGAAACAAA+GGG | - | chr2_4:35904261-35904280 | Msa0326280:intron | 30.0% | |
| AGAAACATTTGAGAAAGACA+TGG | + | chr2_4:35904384-35904403 | None:intergenic | 30.0% | |
| ACAAAACATCTAATAGAGTC+GGG | + | chr2_4:35904417-35904436 | None:intergenic | 30.0% | |
| CAAATGACTTACACTTAACT+TGG | + | chr2_4:35904764-35904783 | None:intergenic | 30.0% | |
| CAAGTTAAGTGTAAGTCATT+TGG | - | chr2_4:35904762-35904781 | Msa0326280:intron | 30.0% | |
| CATCCAATAAATGAAGTATG+TGG | - | chr2_4:35905194-35905213 | Msa0326280:CDS | 30.0% | |
| AGACCACATACTTCATTTAT+TGG | + | chr2_4:35905200-35905219 | None:intergenic | 30.0% | |
| CATTCAATAAACGATGTATG+TGG | + | chr2_4:35905232-35905251 | None:intergenic | 30.0% | |
| TATAATAGTGAGTTAGTGAC+CGG | - | chr2_4:35905275-35905294 | Msa0326280:CDS | 30.0% | |
| AGTACCTTGATAGACTTATT+TGG | - | chr2_4:35905302-35905321 | Msa0326280:CDS | 30.0% | |
| AGAACCAAATAAGTCTATCA+AGG | + | chr2_4:35905309-35905328 | None:intergenic | 30.0% | |
| TCATCTGCCACATTAATTTA+TGG | - | chr2_4:35905342-35905361 | Msa0326280:CDS | 30.0% | |
| TTAATTTATGGTCCAACGAT+TGG | - | chr2_4:35905354-35905373 | Msa0326280:CDS | 30.0% | |
| ! | TGTGATACGCTTGATTTTAA+GGG | + | chr2_4:35905514-35905533 | None:intergenic | 30.0% |
| ! | TTGTGATACGCTTGATTTTA+AGG | + | chr2_4:35905515-35905534 | None:intergenic | 30.0% |
| AAAAGTTAATATATTCGGCG+GGG | + | chr2_4:35905583-35905602 | None:intergenic | 30.0% | |
| CAAAAGTTAATATATTCGGC+GGG | + | chr2_4:35905584-35905603 | None:intergenic | 30.0% | |
| CCAAAAGTTAATATATTCGG+CGG | + | chr2_4:35905585-35905604 | None:intergenic | 30.0% | |
| TTTCTACGTGAATAACGTAA+GGG | + | chr2_4:35905713-35905732 | None:intergenic | 30.0% | |
| ATTTCTACGTGAATAACGTA+AGG | + | chr2_4:35905714-35905733 | None:intergenic | 30.0% | |
| TGTCAACCCAAATCTTTAAT+CGG | - | chr2_4:35905839-35905858 | Msa0326280:intron | 30.0% | |
| ACTTGACCGATTAAAGATTT+GGG | + | chr2_4:35905848-35905867 | None:intergenic | 30.0% | |
| !! | GAGTTTGTTATTCTTTGCAT+TGG | - | chr2_4:35906196-35906215 | Msa0326280:intron | 30.0% |
| AATAAGAGAGTTACAGTAGT+AGG | - | chr2_4:35906349-35906368 | Msa0326280:intron | 30.0% | |
| TTCAATCCATTAACTTCTAC+AGG | - | chr2_4:35906503-35906522 | Msa0326280:intron | 30.0% | |
| ! | TCTCCTAGATTTCAACATTT+TGG | - | chr2_4:35906571-35906590 | Msa0326280:intron | 30.0% |
| ! | CTCCTAGATTTCAACATTTT+GGG | - | chr2_4:35906572-35906591 | Msa0326280:intron | 30.0% |
| ACTACAATGTATCTTACCAA+TGG | + | chr2_4:35906698-35906717 | None:intergenic | 30.0% | |
| ! | CACTCTAAATTTTCAGAGAT+GGG | - | chr2_4:35906800-35906819 | Msa0326280:intron | 30.0% |
| ! | ACTCTAAATTTTCAGAGATG+GGG | - | chr2_4:35906801-35906820 | Msa0326280:intron | 30.0% |
| GAAATATCTGCATGTCAAAT+TGG | - | chr2_4:35906909-35906928 | Msa0326280:intron | 30.0% | |
| CTTTGTCAAAAAAGGAATCA+GGG | + | chr2_4:35906941-35906960 | None:intergenic | 30.0% | |
| ACTTTGTCAAAAAAGGAATC+AGG | + | chr2_4:35906942-35906961 | None:intergenic | 30.0% | |
| TTGTGATTTCTTTATCTCGA+TGG | + | chr2_4:35906976-35906995 | None:intergenic | 30.0% | |
| !! | GTTTACATATTTTCTAGGAG+TGG | - | chr2_4:35907563-35907582 | Msa0326280:intron | 30.0% |
| ! | ATCCTATCATTGCCAATTTT+GGG | + | chr2_4:35907661-35907680 | None:intergenic | 30.0% |
| ! | TATCCTATCATTGCCAATTT+TGG | + | chr2_4:35907662-35907681 | None:intergenic | 30.0% |
| ATTGCCTAGTATAAAAGTGA+TGG | - | chr2_4:35907760-35907779 | Msa0326280:intron | 30.0% | |
| !! | TTCTCCATCACTTTTATACT+AGG | + | chr2_4:35907767-35907786 | None:intergenic | 30.0% |
| ! | TAGTATAAAAGTGATGGAGA+AGG | - | chr2_4:35907766-35907785 | Msa0326280:intron | 30.0% |
| TGGAGAAGGATGTTAAATTA+TGG | - | chr2_4:35907780-35907799 | Msa0326280:intron | 30.0% | |
| GGAGAAGGATGTTAAATTAT+GGG | - | chr2_4:35907781-35907800 | Msa0326280:intron | 30.0% | |
| ACAAGACCATTATAATCAGT+GGG | + | chr2_4:35907959-35907978 | None:intergenic | 30.0% | |
| AACAAGACCATTATAATCAG+TGG | + | chr2_4:35907960-35907979 | None:intergenic | 30.0% | |
| ACGAGTCAATAAACTAAGAA+GGG | + | chr2_4:35908253-35908272 | None:intergenic | 30.0% | |
| !! | TTAGTTTATTGACTCGTCTA+TGG | - | chr2_4:35908256-35908275 | Msa0326280:five_prime_UTR | 30.0% |
| TGCAAATATGCTCTACAGAT+TGG | - | chr2_4:35903379-35903398 | Msa0326280:intron | 35.0% | |
| TCATCAGCTTCATATACAAC+AGG | + | chr2_4:35903412-35903431 | None:intergenic | 35.0% | |
| GTTGTATATGAAGCTGATGA+TGG | - | chr2_4:35903412-35903431 | Msa0326280:three_prime_UTR | 35.0% | |
| CCCAAGGAAAATCTGAAAAT+TGG | + | chr2_4:35903501-35903520 | None:intergenic | 35.0% | |
| ! | TCTTTTACAGAAGAATCCCA+AGG | + | chr2_4:35903517-35903536 | None:intergenic | 35.0% |
| CTGATGAAGATATGAAGTCA+TGG | - | chr2_4:35903656-35903675 | Msa0326280:CDS | 35.0% | |
| ! | CTTTGTTTCATTCTCACCTA+TGG | + | chr2_4:35904262-35904281 | None:intergenic | 35.0% |
| CATAGGTGAGAATGAAACAA+AGG | - | chr2_4:35904260-35904279 | Msa0326280:intron | 35.0% | |
| CAAAACATCTAATAGAGTCG+GGG | + | chr2_4:35904416-35904435 | None:intergenic | 35.0% | |
| ! | GTTAATGACTCGATGTCTTT+TGG | + | chr2_4:35904506-35904525 | None:intergenic | 35.0% |
| TTGTCAAACGCTTCTCAAAT+TGG | + | chr2_4:35904563-35904582 | None:intergenic | 35.0% | |
| ! | CAAATTCTCAAATTGGTCTC+TGG | + | chr2_4:35904617-35904636 | None:intergenic | 35.0% |
| AGTGAAATAATTACTCCCTC+CGG | - | chr2_4:35905140-35905159 | Msa0326280:intron | 35.0% | |
| CGTTGGACCATAAATTAATG+TGG | + | chr2_4:35905352-35905371 | None:intergenic | 35.0% | |
| ! | CCACTCATAAAATTCAGGTT+GGG | + | chr2_4:35905402-35905421 | None:intergenic | 35.0% |
| ! | CCGCCGAATATATTAACTTT+TGG | - | chr2_4:35905582-35905601 | Msa0326280:intron | 35.0% |
| !! | AAGATTTGGGTTGACAATGT+GGG | + | chr2_4:35905835-35905854 | None:intergenic | 35.0% |
| !! | AAAGATTTGGGTTGACAATG+TGG | + | chr2_4:35905836-35905855 | None:intergenic | 35.0% |
| CACTTGACCGATTAAAGATT+TGG | + | chr2_4:35905849-35905868 | None:intergenic | 35.0% | |
| ATCTTTAATCGGTCAAGTGA+CGG | - | chr2_4:35905850-35905869 | Msa0326280:intron | 35.0% | |
| CTTTGCATTGGGAAATATAG+TGG | - | chr2_4:35906208-35906227 | Msa0326280:intron | 35.0% | |
| CCTTACCTGTAAAAACTTCT+GGG | + | chr2_4:35906270-35906289 | None:intergenic | 35.0% | |
| ACCTTACCTGTAAAAACTTC+TGG | + | chr2_4:35906271-35906290 | None:intergenic | 35.0% | |
| AGGTAAGGTTATGCATTCTA+TGG | - | chr2_4:35906282-35906301 | Msa0326280:intron | 35.0% | |
| ! | TTCTATGGATTACTCTTCCT+TGG | - | chr2_4:35906297-35906316 | Msa0326280:intron | 35.0% |
| TTCTATGGATAATCGTGCAA+GGG | + | chr2_4:35906538-35906557 | None:intergenic | 35.0% | |
| TGCCCAAAATGTTGAAATCT+AGG | + | chr2_4:35906577-35906596 | None:intergenic | 35.0% | |
| !! | AACATTTTGGGCATTAGTCT+CGG | - | chr2_4:35906584-35906603 | Msa0326280:intron | 35.0% |
| TCTTACCAATGGTGATAGTA+AGG | + | chr2_4:35906687-35906706 | None:intergenic | 35.0% | |
| ! | GCACTCTAAATTTTCAGAGA+TGG | - | chr2_4:35906799-35906818 | Msa0326280:intron | 35.0% |
| ATTCTTGCCACAGGATATAA+AGG | - | chr2_4:35907065-35907084 | Msa0326280:intron | 35.0% | |
| GTTCAAGGATTTCTCTCTAT+AGG | - | chr2_4:35907144-35907163 | Msa0326280:intron | 35.0% | |
| ! | GGTGGTTTACTCAAGAATTT+TGG | + | chr2_4:35907306-35907325 | None:intergenic | 35.0% |
| TACAAAGGCAGAGATCAAAT+TGG | + | chr2_4:35907327-35907346 | None:intergenic | 35.0% | |
| TACAGTAGTGACCAATTTAG+TGG | - | chr2_4:35907541-35907560 | Msa0326280:intron | 35.0% | |
| ATCCCAAAATTGGCAATGAT+AGG | - | chr2_4:35907656-35907675 | Msa0326280:intron | 35.0% | |
| CTAATGAAATGAGATGCCAA+TGG | - | chr2_4:35907708-35907727 | Msa0326280:intron | 35.0% | |
| CTAGAAAATGTGCTAACCAT+TGG | + | chr2_4:35907727-35907746 | None:intergenic | 35.0% | |
| ! | AGATCATGCATTGTTACTTG+TGG | - | chr2_4:35907842-35907861 | Msa0326280:CDS | 35.0% |
| TAGCACACCTCTAAACAAAA+AGG | + | chr2_4:35908003-35908022 | None:intergenic | 35.0% | |
| TCAGCAGAATACATGGTAAT+TGG | - | chr2_4:35908040-35908059 | Msa0326280:CDS | 35.0% | |
| CAGAATACATGGTAATTGGA+GGG | - | chr2_4:35908044-35908063 | Msa0326280:CDS | 35.0% | |
| AGAATACATGGTAATTGGAG+GGG | - | chr2_4:35908045-35908064 | Msa0326280:CDS | 35.0% | |
| GACGAGTCAATAAACTAAGA+AGG | + | chr2_4:35908254-35908273 | None:intergenic | 35.0% | |
| TGATGAACTCAGATAGATGC+AGG | + | chr2_4:35903268-35903287 | None:intergenic | 40.0% | |
| GAGCATATTTGCAAGCAAGT+AGG | + | chr2_4:35903372-35903391 | None:intergenic | 40.0% | |
| !! | TATGAAGCTGATGATGGTGT+TGG | - | chr2_4:35903418-35903437 | Msa0326280:three_prime_UTR | 40.0% |
| !!! | GGTATGCTTGTTTTGGGTTT+TGG | + | chr2_4:35903480-35903499 | None:intergenic | 40.0% |
| AAGTCATGGGAATTATGGAG+TGG | - | chr2_4:35903670-35903689 | Msa0326280:CDS | 40.0% | |
| TGGGAATTATGGAGTGGTAA+TGG | - | chr2_4:35903676-35903695 | Msa0326280:CDS | 40.0% | |
| !!! | AGTGGTAATGGATGTCCTTT+TGG | - | chr2_4:35903688-35903707 | Msa0326280:CDS | 40.0% |
| TGTAATATGCCATGTTCCCT+TGG | + | chr2_4:35903716-35903735 | None:intergenic | 40.0% | |
| GTGAGAATGAAACAAAGGGA+TGG | - | chr2_4:35904265-35904284 | Msa0326280:intron | 40.0% | |
| !! | AGAAGCGTTTGACAAAGACA+TGG | - | chr2_4:35904568-35904587 | Msa0326280:CDS | 40.0% |
| TGGTTATAATAGTGACCGGA+GGG | + | chr2_4:35905158-35905177 | None:intergenic | 40.0% | |
| TTGGTTATAATAGTGACCGG+AGG | + | chr2_4:35905159-35905178 | None:intergenic | 40.0% | |
| ! | CCCAACCTGAATTTTATGAG+TGG | - | chr2_4:35905399-35905418 | Msa0326280:intron | 40.0% |
| GCCACTCATAAAATTCAGGT+TGG | + | chr2_4:35905403-35905422 | None:intergenic | 40.0% | |
| GACAGCCACTCATAAAATTC+AGG | + | chr2_4:35905407-35905426 | None:intergenic | 40.0% | |
| !! | TTTGCTCAGACTAGTTTGCT+CGG | - | chr2_4:35905432-35905451 | Msa0326280:intron | 40.0% |
| CTCAATATCATGTTGCGGAA+TGG | + | chr2_4:35905745-35905764 | None:intergenic | 40.0% | |
| ! | AAAGGCCCAGAAGTTTTTAC+AGG | - | chr2_4:35906262-35906281 | Msa0326280:intron | 40.0% |
| ! | CCCAGAAGTTTTTACAGGTA+AGG | - | chr2_4:35906267-35906286 | Msa0326280:intron | 40.0% |
| ! | AGCAGCATTTTCTTTGTCCA+AGG | + | chr2_4:35906317-35906336 | None:intergenic | 40.0% |
| GTGACTCCTGTAGAAGTTAA+TGG | + | chr2_4:35906512-35906531 | None:intergenic | 40.0% | |
| GTTCTATGGATAATCGTGCA+AGG | + | chr2_4:35906539-35906558 | None:intergenic | 40.0% | |
| !!! | GAACTTTTAGTTCACAAGCC+CGG | - | chr2_4:35906632-35906651 | Msa0326280:intron | 40.0% |
| TACCAATGGTGATAGTAAGG+TGG | + | chr2_4:35906684-35906703 | None:intergenic | 40.0% | |
| AAGTTGCCACTGAAGAAGTA+TGG | - | chr2_4:35906858-35906877 | Msa0326280:intron | 40.0% | |
| ACTAGTCCATACTTCTTCAG+TGG | + | chr2_4:35906867-35906886 | None:intergenic | 40.0% | |
| ! | AGCTTTAGCTTCTGCAAAGA+AGG | - | chr2_4:35906996-35907015 | Msa0326280:intron | 40.0% |
| GATGTAGTTATTCTTGCCAC+AGG | - | chr2_4:35907056-35907075 | Msa0326280:intron | 40.0% | |
| TTGGTCACCTTTATATCCTG+TGG | + | chr2_4:35907075-35907094 | None:intergenic | 40.0% | |
| AAAGGCAGAGATCAAATTGG+TGG | + | chr2_4:35907324-35907343 | None:intergenic | 40.0% | |
| AATCTATGGTAAACCACTCC+AGG | - | chr2_4:35907615-35907634 | Msa0326280:intron | 40.0% | |
| GATGTATTATTTGCCTGGAG+TGG | + | chr2_4:35907631-35907650 | None:intergenic | 40.0% | |
| GCAATGATAGGATATGCTGA+GGG | - | chr2_4:35907668-35907687 | Msa0326280:intron | 40.0% | |
| ! | GCATTGTTACTTGTGGCATA+TGG | - | chr2_4:35907849-35907868 | Msa0326280:CDS | 40.0% |
| TGTAATCCGAGGAGAAAGAA+GGG | - | chr2_4:35907902-35907921 | Msa0326280:CDS | 40.0% | |
| AAAAGACCCTTCTTTCTCCT+CGG | + | chr2_4:35907911-35907930 | None:intergenic | 40.0% | |
| ! | GAGAAAGAAGGGTCTTTTTG+CGG | - | chr2_4:35907913-35907932 | Msa0326280:CDS | 40.0% |
| TTATAATCAGTGGGCCCATA+TGG | + | chr2_4:35907950-35907969 | None:intergenic | 40.0% | |
| ! | TATGGGCCCACTGATTATAA+TGG | - | chr2_4:35907950-35907969 | Msa0326280:CDS | 40.0% |
| TCTCACTTCAGCAGAATACA+TGG | - | chr2_4:35908033-35908052 | Msa0326280:CDS | 40.0% | |
| GCAGAATACATGGTAATTGG+AGG | - | chr2_4:35908043-35908062 | Msa0326280:CDS | 40.0% | |
| ! | TAGAGAAAGCACAACACTAG+TGG | - | chr2_4:35908082-35908101 | Msa0326280:CDS | 40.0% |
| AGAGTTGCAATTGTTGGTGC+AGG | - | chr2_4:35903337-35903356 | Msa0326280:three_prime_UTR | 45.0% | |
| ATTGTTGGTGCAGGAATCAG+TGG | - | chr2_4:35903346-35903365 | Msa0326280:three_prime_UTR | 45.0% | |
| ! | ATGATGGTGTTGGAGGACTA+TGG | - | chr2_4:35903428-35903447 | Msa0326280:three_prime_UTR | 45.0% |
| GGGAACATGGCATATTACAG+TGG | - | chr2_4:35903717-35903736 | Msa0326280:CDS | 45.0% | |
| GGTATCACTATAACGGTCGT+CGG | + | chr2_4:35904705-35904724 | None:intergenic | 45.0% | |
| AATAGTGAGTTAGTGACCGG+AGG | - | chr2_4:35905278-35905297 | Msa0326280:CDS | 45.0% | |
| ATAGTGAGTTAGTGACCGGA+GGG | - | chr2_4:35905279-35905298 | Msa0326280:CDS | 45.0% | |
| TTATGGTCCAACGATTGGTG+TGG | - | chr2_4:35905359-35905378 | Msa0326280:CDS | 45.0% | |
| TAATGCACCACACCAATCGT+TGG | + | chr2_4:35905369-35905388 | None:intergenic | 45.0% | |
| ACGATTGGTGTGGTGCATTA+TGG | - | chr2_4:35905369-35905388 | Msa0326280:CDS | 45.0% | |
| !! | ATTTGGGTTGACAATGTGGG+TGG | + | chr2_4:35905832-35905851 | None:intergenic | 45.0% |
| ! | AAACTTCTGGGCCTTTTCCA+GGG | + | chr2_4:35906258-35906277 | None:intergenic | 45.0% |
| ! | AAAACTTCTGGGCCTTTTCC+AGG | + | chr2_4:35906259-35906278 | None:intergenic | 45.0% |
| AGAGTTACAGTAGTAGGCTC+AGG | - | chr2_4:35906355-35906374 | Msa0326280:intron | 45.0% | |
| ACCATTTGCATCTGCGCATT+CGG | + | chr2_4:35906404-35906423 | None:intergenic | 45.0% | |
| !! | ACACTTCCTTCTTGGCCTTT+TGG | - | chr2_4:35906658-35906677 | Msa0326280:intron | 45.0% |
| GTGATAGTAAGGTGGCCAAA+AGG | + | chr2_4:35906676-35906695 | None:intergenic | 45.0% | |
| GCGAGGATGTATTATTTGCC+TGG | + | chr2_4:35907636-35907655 | None:intergenic | 45.0% | |
| ACATCCTCGCATCCCAAAAT+TGG | - | chr2_4:35907646-35907665 | Msa0326280:intron | 45.0% | |
| !!! | ATTGCCAATTTTGGGATGCG+AGG | + | chr2_4:35907653-35907672 | None:intergenic | 45.0% |
| GGCAATGATAGGATATGCTG+AGG | - | chr2_4:35907667-35907686 | Msa0326280:intron | 45.0% | |
| GAGACATGAAGTGTAATCCG+AGG | - | chr2_4:35907891-35907910 | Msa0326280:CDS | 45.0% | |
| GTGTAATCCGAGGAGAAAGA+AGG | - | chr2_4:35907901-35907920 | Msa0326280:CDS | 45.0% | |
| CGGAGCTCTTTGAACCATAT+GGG | - | chr2_4:35907933-35907952 | Msa0326280:CDS | 45.0% | |
| !!! | AAGTAAAAAATTTAATTTTA+TGG | + | chr2_4:35904726-35904745 | None:intergenic | 5.0% |
| !! | GAAGCTGATGATGGTGTTGG+AGG | - | chr2_4:35903421-35903440 | Msa0326280:three_prime_UTR | 50.0% |
| ! | ATGGTGTTGGAGGACTATGG+AGG | - | chr2_4:35903431-35903450 | Msa0326280:three_prime_UTR | 50.0% |
| !!! | TGGATGTCCTTTTGGCTCCA+AGG | - | chr2_4:35903696-35903715 | Msa0326280:CDS | 50.0% |
| !!! | GGATGTCCTTTTGGCTCCAA+GGG | - | chr2_4:35903697-35903716 | Msa0326280:CDS | 50.0% |
| CATGTTCCCTTGGAGCCAAA+AGG | + | chr2_4:35903706-35903725 | None:intergenic | 50.0% | |
| !!! | CTTTTGGCTCCAAGGGAACA+TGG | - | chr2_4:35903704-35903723 | Msa0326280:CDS | 50.0% |
| AGCAACCGAGTTCTCCCTTT+CGG | - | chr2_4:35904228-35904247 | Msa0326280:intron | 50.0% | |
| ! | GTCTATCAAGGTACTCCCTC+CGG | + | chr2_4:35905297-35905316 | None:intergenic | 50.0% |
| GGTGTGGTGCATTATGGCAT+TGG | - | chr2_4:35905375-35905394 | Msa0326280:intron | 50.0% | |
| !! | GGGAGGAACTCTGGAATGTT+TGG | + | chr2_4:35906238-35906257 | None:intergenic | 50.0% |
| AACATTCCAGAGTTCCTCCC+TGG | - | chr2_4:35906238-35906257 | Msa0326280:intron | 50.0% | |
| TTATCCATAGAACTGCGCGC+TGG | - | chr2_4:35906546-35906565 | Msa0326280:intron | 50.0% | |
| !! | CCAAGAAGGAAGTGTTCTCC+GGG | + | chr2_4:35906653-35906672 | None:intergenic | 50.0% |
| !! | GCCAAGAAGGAAGTGTTCTC+CGG | + | chr2_4:35906654-35906673 | None:intergenic | 50.0% |
| GGCCACCTTACTATCACCAT+TGG | - | chr2_4:35906679-35906698 | Msa0326280:intron | 50.0% | |
| GCGGAGCTCTTTGAACCATA+TGG | - | chr2_4:35907932-35907951 | Msa0326280:CDS | 50.0% | |
| ! | ATGGTAATTGGAGGGGTGCA+TGG | - | chr2_4:35908052-35908071 | Msa0326280:CDS | 50.0% |
| AACCGAGTTCTCCCTTTCGG+TGG | - | chr2_4:35904231-35904250 | Msa0326280:intron | 55.0% | |
| CTATGGGAACGCCACCGAAA+GGG | + | chr2_4:35904245-35904264 | None:intergenic | 55.0% | |
| ! | TGGGTTGACAATGTGGGTGG+TGG | + | chr2_4:35905829-35905848 | None:intergenic | 55.0% |
| ! | CCTTTTCCAGGGAGGAACTC+TGG | + | chr2_4:35906247-35906266 | None:intergenic | 55.0% |
| CCAGAGTTCCTCCCTGGAAA+AGG | - | chr2_4:35906244-35906263 | Msa0326280:intron | 55.0% | |
| GCCGAATGCGCAGATGCAAA+TGG | - | chr2_4:35906400-35906419 | Msa0326280:intron | 55.0% | |
| GAAACCAGCGCGCAGTTCTA+TGG | + | chr2_4:35906553-35906572 | None:intergenic | 55.0% | |
| CCCGGAGAACACTTCCTTCT+TGG | - | chr2_4:35906650-35906669 | Msa0326280:intron | 55.0% | |
| AGGTGGCCAAAAGGCCAAGA+AGG | + | chr2_4:35906667-35906686 | None:intergenic | 55.0% | |
| CGCCACCGAAAGGGAGAACT+CGG | + | chr2_4:35904236-35904255 | None:intergenic | 60.0% | |
| CCTATGGGAACGCCACCGAA+AGG | + | chr2_4:35904246-35904265 | None:intergenic | 60.0% | |
| CCTTTCGGTGGCGTTCCCAT+AGG | - | chr2_4:35904243-35904262 | Msa0326280:intron | 60.0% | |
| ! | CTTCTGGGCCTTTTCCAGGG+AGG | + | chr2_4:35906255-35906274 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 35903248 | 35908327 | 35903248 | ID=Msa0326280;Name=Msa0326280 |
| chr2_4 | mRNA | 35903248 | 35908327 | 35903248 | ID=Msa0326280-mRNA-1;Parent=Msa0326280;Name=Msa0326280-mRNA-1;_AED=0.04;_eAED=0.04;_QI=80|1|1|1|0.8|0.66|6|309|517 |
| chr2_4 | exon | 35903248 | 35903374 | 35903248 | ID=Msa0326280-mRNA-1:exon:11074;Parent=Msa0326280-mRNA-1 |
| chr2_4 | exon | 35903405 | 35903938 | 35903405 | ID=Msa0326280-mRNA-1:exon:11073;Parent=Msa0326280-mRNA-1 |
| chr2_4 | exon | 35904410 | 35904759 | 35904410 | ID=Msa0326280-mRNA-1:exon:11072;Parent=Msa0326280-mRNA-1 |
| chr2_4 | exon | 35904875 | 35905050 | 35904875 | ID=Msa0326280-mRNA-1:exon:11071;Parent=Msa0326280-mRNA-1 |
| chr2_4 | exon | 35905154 | 35905391 | 35905154 | ID=Msa0326280-mRNA-1:exon:11070;Parent=Msa0326280-mRNA-1 |
| chr2_4 | exon | 35907810 | 35908327 | 35907810 | ID=Msa0326280-mRNA-1:exon:11069;Parent=Msa0326280-mRNA-1 |
| chr2_4 | five_prime_UTR | 35908248 | 35908327 | 35908248 | ID=Msa0326280-mRNA-1:five_prime_utr;Parent=Msa0326280-mRNA-1 |
| chr2_4 | CDS | 35907810 | 35908247 | 35907810 | ID=Msa0326280-mRNA-1:cds;Parent=Msa0326280-mRNA-1 |
| chr2_4 | CDS | 35905154 | 35905391 | 35905154 | ID=Msa0326280-mRNA-1:cds;Parent=Msa0326280-mRNA-1 |
| chr2_4 | CDS | 35904875 | 35905050 | 35904875 | ID=Msa0326280-mRNA-1:cds;Parent=Msa0326280-mRNA-1 |
| chr2_4 | CDS | 35904410 | 35904759 | 35904410 | ID=Msa0326280-mRNA-1:cds;Parent=Msa0326280-mRNA-1 |
| chr2_4 | CDS | 35903587 | 35903938 | 35903587 | ID=Msa0326280-mRNA-1:cds;Parent=Msa0326280-mRNA-1 |
| chr2_4 | three_prime_UTR | 35903405 | 35903586 | 35903405 | ID=Msa0326280-mRNA-1:three_prime_utr;Parent=Msa0326280-mRNA-1 |
| chr2_4 | three_prime_UTR | 35903248 | 35903374 | 35903248 | ID=Msa0326280-mRNA-1:three_prime_utr;Parent=Msa0326280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
