Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0206200 | XP_024631713.2 | 92.456 | 517 | 39 | 0 | 1 | 517 | 1 | 517 | 0.0 | 984 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0206200 | sp|Q9LMA1|FMO1_ARATH | 42.389 | 519 | 278 | 11 | 4 | 512 | 12 | 519 | 4.88e-136 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0206200 | A0A396J7C8 | 92.456 | 517 | 39 | 0 | 1 | 517 | 1 | 517 | 0.0 | 984 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0184070 | Msa0206200 | 0.804286 | 2.323569e-49 | -8.615850e-47 |
| Msa0206080 | Msa0206200 | 0.812180 | 4.826476e-51 | -8.615850e-47 |
| Msa0206130 | Msa0206200 | 0.835251 | 1.871221e-56 | -8.615850e-47 |
| Msa0206160 | Msa0206200 | 0.824705 | 6.984756e-54 | -8.615850e-47 |
| Msa0206190 | Msa0206200 | 0.840226 | 9.881086e-58 | -8.615850e-47 |
| Msa0206200 | Msa0249270 | 0.860626 | 1.811524e-63 | -8.615850e-47 |
| Msa0206200 | Msa0326270 | 0.831552 | 1.564963e-55 | -8.615850e-47 |
| Msa0206200 | Msa0326280 | 0.931189 | 5.451675e-94 | -8.615850e-47 |
| Msa0206200 | Msa0594250 | -0.813439 | 2.558116e-51 | -8.615850e-47 |
| Msa0206200 | Msa1007980 | 0.801210 | 1.002519e-48 | -8.615850e-47 |
| Msa0206200 | Msa1051410 | 0.842863 | 1.993545e-58 | -8.615850e-47 |
| Msa0206200 | Msa1129920 | 0.809108 | 2.226507e-50 | -8.615850e-47 |
| Msa0206200 | Msa1137240 | 0.816898 | 4.361373e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0206200 | MtrunA17_Chr2g0304721 | 92.456 | 517 | 39 | 0 | 1 | 517 | 1 | 517 | 0.0 | 984 |
| Msa0206200 | MtrunA17_Chr2g0305211 | 78.654 | 520 | 108 | 1 | 1 | 517 | 1 | 520 | 0.0 | 868 |
| Msa0206200 | MtrunA17_Chr2g0305231 | 78.654 | 520 | 108 | 1 | 1 | 517 | 1 | 520 | 0.0 | 868 |
| Msa0206200 | MtrunA17_Chr2g0304651 | 78.077 | 520 | 109 | 2 | 1 | 517 | 1 | 518 | 0.0 | 842 |
| Msa0206200 | MtrunA17_Chr2g0301661 | 40.741 | 513 | 293 | 8 | 4 | 511 | 13 | 519 | 1.59e-126 | 379 |
| Msa0206200 | MtrunA17_Chr2g0301471 | 41.131 | 513 | 291 | 8 | 4 | 511 | 13 | 519 | 9.75e-124 | 372 |
| Msa0206200 | MtrunA17_Chr4g0070101 | 41.165 | 498 | 266 | 12 | 27 | 511 | 36 | 519 | 1.29e-121 | 367 |
| Msa0206200 | MtrunA17_Chr4g0070111 | 40.426 | 282 | 163 | 4 | 233 | 512 | 1 | 279 | 4.13e-68 | 220 |
| Msa0206200 | MtrunA17_Chr2g0286701 | 39.574 | 235 | 137 | 4 | 1 | 233 | 10 | 241 | 1.14e-54 | 186 |
| Msa0206200 | MtrunA17_Chr4g0070121 | 42.995 | 207 | 103 | 3 | 27 | 225 | 36 | 235 | 6.82e-49 | 168 |
| Msa0206200 | MtrunA17_Chr2g0286681 | 40.594 | 101 | 59 | 1 | 288 | 388 | 19 | 118 | 3.82e-23 | 94.7 |
| Msa0206200 | MtrunA17_Chr2g0286671 | 39.604 | 101 | 60 | 1 | 411 | 511 | 1 | 100 | 8.42e-19 | 81.6 |
| Msa0206200 | MtrunA17_Chr1g0182991 | 25.333 | 375 | 214 | 18 | 7 | 376 | 27 | 340 | 8.35e-16 | 79.7 |
| Msa0206200 | MtrunA17_Chr8g0352461 | 25.692 | 253 | 131 | 7 | 4 | 232 | 3 | 222 | 2.97e-15 | 77.8 |
| Msa0206200 | MtrunA17_Chr7g0268621 | 25.490 | 357 | 204 | 17 | 2 | 348 | 3 | 307 | 5.32e-15 | 76.6 |
| Msa0206200 | MtrunA17_Chr8g0352481 | 25.692 | 253 | 130 | 7 | 4 | 232 | 3 | 221 | 7.50e-15 | 76.6 |
| Msa0206200 | MtrunA17_Chr7g0262591 | 24.934 | 377 | 211 | 19 | 6 | 376 | 25 | 335 | 9.28e-14 | 73.2 |
| Msa0206200 | MtrunA17_Chr1g0148801 | 26.953 | 256 | 138 | 11 | 7 | 255 | 18 | 231 | 1.78e-13 | 72.4 |
| Msa0206200 | MtrunA17_Chr4g0025641 | 27.111 | 225 | 128 | 8 | 1 | 223 | 12 | 202 | 2.49e-13 | 69.7 |
| Msa0206200 | MtrunA17_Chr3g0139441 | 26.260 | 377 | 211 | 18 | 6 | 376 | 40 | 355 | 1.25e-11 | 66.6 |
| Msa0206200 | MtrunA17_Chr5g0412881 | 24.093 | 386 | 208 | 16 | 2 | 374 | 3 | 316 | 2.84e-11 | 65.5 |
| Msa0206200 | MtrunA17_Chr3g0091441 | 26.772 | 254 | 133 | 11 | 3 | 229 | 11 | 238 | 3.11e-11 | 65.5 |
| Msa0206200 | MtrunA17_Chr3g0125691 | 23.704 | 405 | 233 | 18 | 1 | 396 | 3 | 340 | 3.29e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0206200 | AT1G19250.1 | 42.389 | 519 | 278 | 11 | 4 | 512 | 12 | 519 | 4.96e-137 | 407 |
| Msa0206200 | AT5G45180.1 | 38.229 | 497 | 250 | 13 | 4 | 492 | 12 | 459 | 5.50e-108 | 330 |
| Msa0206200 | AT4G28720.1 | 26.455 | 378 | 211 | 20 | 6 | 376 | 26 | 343 | 1.12e-15 | 79.7 |
| Msa0206200 | AT1G62560.2 | 26.772 | 254 | 127 | 9 | 3 | 229 | 11 | 232 | 2.12e-15 | 78.6 |
| Msa0206200 | AT1G62560.1 | 26.772 | 254 | 127 | 9 | 3 | 229 | 11 | 232 | 2.68e-15 | 78.6 |
| Msa0206200 | AT1G48910.1 | 25.132 | 378 | 216 | 16 | 1 | 374 | 1 | 315 | 3.51e-14 | 74.7 |
| Msa0206200 | AT5G07800.1 | 26.154 | 260 | 128 | 9 | 3 | 229 | 14 | 242 | 9.35e-14 | 73.9 |
| Msa0206200 | AT5G11320.2 | 27.402 | 281 | 152 | 12 | 7 | 276 | 19 | 258 | 3.31e-13 | 71.6 |
| Msa0206200 | AT4G32540.2 | 25.397 | 378 | 209 | 19 | 7 | 376 | 23 | 335 | 3.64e-13 | 72.0 |
| Msa0206200 | AT5G11320.1 | 26.990 | 289 | 159 | 12 | 7 | 284 | 19 | 266 | 3.69e-13 | 71.6 |
| Msa0206200 | AT1G65860.1 | 23.228 | 254 | 135 | 7 | 3 | 229 | 11 | 231 | 5.54e-13 | 71.6 |
| Msa0206200 | AT5G43890.1 | 25.333 | 375 | 217 | 18 | 7 | 376 | 27 | 343 | 9.27e-13 | 70.5 |
| Msa0206200 | AT4G32540.1 | 27.016 | 248 | 135 | 12 | 7 | 251 | 23 | 227 | 1.10e-12 | 70.5 |
| Msa0206200 | AT1G62620.2 | 25.498 | 251 | 133 | 8 | 5 | 229 | 13 | 235 | 1.80e-12 | 69.7 |
| Msa0206200 | AT1G62620.1 | 25.498 | 251 | 133 | 8 | 5 | 229 | 13 | 235 | 2.63e-12 | 69.3 |
| Msa0206200 | AT1G63370.2 | 25.100 | 251 | 134 | 8 | 5 | 229 | 13 | 235 | 7.03e-12 | 67.4 |
| Msa0206200 | AT1G04610.1 | 25.269 | 372 | 222 | 15 | 7 | 376 | 39 | 356 | 7.43e-12 | 67.8 |
| Msa0206200 | AT1G63370.1 | 25.100 | 251 | 134 | 8 | 5 | 229 | 13 | 235 | 9.15e-12 | 67.8 |
| Msa0206200 | AT4G13260.2 | 23.569 | 297 | 173 | 13 | 7 | 288 | 30 | 287 | 6.47e-11 | 63.9 |
Find 114 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCCTATCATTGCCAATTT+TGG | 0.050890 | 2_1:+35104969 | None:intergenic |
| TCTCCTAGATTTCAACATTT+TGG | 0.064568 | 2_1:-35106057 | Msa0206200:CDS |
| TTGAACTGTCAATGTAATTT+TGG | 0.131877 | 2_1:+35105501 | None:intergenic |
| AATAACTACATTTGTTTCTA+AGG | 0.178964 | 2_1:+35105583 | None:intergenic |
| TAGTCTTATTATTTACAAAA+TGG | 0.231432 | 2_1:-35109825 | Msa0206200:exon |
| CCCGGAGAACACTTCCTTCT+TGG | 0.233331 | 2_1:-35105978 | Msa0206200:CDS |
| TGGAGAAGGATGTTAAATTA+TGG | 0.235292 | 2_1:-35104848 | Msa0206200:CDS |
| ACACTTCCTTCTTGGCCTTT+TGG | 0.237410 | 2_1:-35105970 | Msa0206200:CDS |
| CCCAAGGAAAATCTGAAAAT+TGG | 0.266448 | 2_1:+35109636 | None:intergenic |
| AGGTAAGGTTATGCATTCTA+TGG | 0.272924 | 2_1:-35106346 | Msa0206200:CDS |
| GAAAATTGGTATGCTTGTTT+TGG | 0.274150 | 2_1:+35109650 | None:intergenic |
| ACATCCTCGCATCCCAAAAT+TGG | 0.284230 | 2_1:-35104982 | Msa0206200:CDS |
| GAAATATCTGCATGTCAAAT+TGG | 0.294249 | 2_1:-35105719 | Msa0206200:CDS |
| TCAGCAGAATACATGGTAAT+TGG | 0.303318 | 2_1:-35104588 | Msa0206200:three_prime_UTR |
| TACCTTTGTTGAGAAATTCT+TGG | 0.304695 | 2_1:+35109388 | None:intergenic |
| GAATCTTATGTAAGGAATAA+TGG | 0.308729 | 2_1:+35109538 | None:intergenic |
| ATATGAAGTCATGGGAATTA+TGG | 0.316758 | 2_1:-35109469 | Msa0206200:CDS |
| TTAGTTTATTGACTCGTCTA+TGG | 0.318799 | 2_1:-35104368 | Msa0206200:three_prime_UTR |
| TTTGTTTATGTTATAACATA+TGG | 0.320348 | 2_1:-35104338 | Msa0206200:three_prime_UTR |
| GCGGAGCTATTTGAACCATA+TGG | 0.339270 | 2_1:-35104696 | Msa0206200:CDS |
| AAAATTACATTGACAGTTCA+AGG | 0.349499 | 2_1:-35105499 | Msa0206200:CDS |
| CAATATATAGCTTTATCCTT+TGG | 0.355651 | 2_1:-35104500 | Msa0206200:three_prime_UTR |
| TCTTGAAGAAAACTATGATT+AGG | 0.356221 | 2_1:+35105740 | None:intergenic |
| GAAACCAGCGCGCAGTTCTA+TGG | 0.366149 | 2_1:+35106078 | None:intergenic |
| ATTCTTGCCACAGGATATAA+AGG | 0.366577 | 2_1:-35105563 | Msa0206200:CDS |
| AATAAGAGAGTTACAGTAGT+AGG | 0.371604 | 2_1:-35106279 | Msa0206200:CDS |
| AGTGGTAATGGATGTCCTTT+TGG | 0.374311 | 2_1:-35109446 | Msa0206200:CDS |
| ACCATTTGCATCTGCACATT+CGG | 0.375170 | 2_1:+35106227 | None:intergenic |
| TGCAAATATGCTCTACAGAT+TGG | 0.376558 | 2_1:-35109755 | Msa0206200:CDS |
| GGGAGGAACTCTGGAATGTT+TGG | 0.377591 | 2_1:+35106393 | None:intergenic |
| TAGCACACCTCTAAACAAAA+AGG | 0.384966 | 2_1:+35104628 | None:intergenic |
| TGCCCAAAATGTTGAAATCT+AGG | 0.386822 | 2_1:+35106054 | None:intergenic |
| CTTTGCATTGGGAAATATAG+TGG | 0.391366 | 2_1:-35106420 | Msa0206200:CDS |
| GTTATTGATATTGATTATGT+TGG | 0.393997 | 2_1:-35109506 | Msa0206200:CDS |
| GGAGAAGGATGTTAAATTAT+GGG | 0.394999 | 2_1:-35104847 | Msa0206200:CDS |
| TTGGAATTGAATCTTATGTA+AGG | 0.401516 | 2_1:+35109530 | None:intergenic |
| GCCAAGAAGGAAGTGTTCTC+CGG | 0.407386 | 2_1:+35105977 | None:intergenic |
| TAAATAATAAGACTAATTGC+TGG | 0.407752 | 2_1:+35109833 | None:intergenic |
| TGGTGATTTCTTTATCATGA+TGG | 0.414917 | 2_1:+35105655 | None:intergenic |
| AAGTTGCCACTGAAGAAGTA+TGG | 0.417922 | 2_1:-35105770 | Msa0206200:CDS |
| GTTCAAGGATTTCTCTCTAT+AGG | 0.419814 | 2_1:-35105484 | Msa0206200:intron |
| TCTAGAACTTGCTTATTACT+TGG | 0.420077 | 2_1:+35109590 | None:intergenic |
| CGGAGCTATTTGAACCATAT+GGG | 0.422701 | 2_1:-35104695 | Msa0206200:CDS |
| TTGTTGAAACATATCTGAAA+TGG | 0.425780 | 2_1:-35105793 | Msa0206200:CDS |
| AGCTTTAGCTTCTGCAAAGA+AGG | 0.428456 | 2_1:-35105632 | Msa0206200:CDS |
| TTATAATCAGTGGGCCCATA+TGG | 0.433595 | 2_1:+35104681 | None:intergenic |
| AGTTTGTGATTCTTTGCATT+GGG | 0.436463 | 2_1:-35106431 | Msa0206200:CDS |
| GCATTGTTACTTGTGGCATA+TGG | 0.438868 | 2_1:-35104779 | Msa0206200:CDS |
| ATAATCAATATCAATAACTT+TGG | 0.441168 | 2_1:+35109511 | None:intergenic |
| ATGATGGTGTTGGAGGACTA+TGG | 0.447006 | 2_1:-35109706 | Msa0206200:CDS |
| TTCTATGGATTACTCTGCCT+TGG | 0.462649 | 2_1:-35106331 | Msa0206200:CDS |
| TGTAATATGCCATGTTCCCT+TGG | 0.468200 | 2_1:+35109421 | None:intergenic |
| GACGAGTCAATAAACTAAGA+AGG | 0.469643 | 2_1:+35104373 | None:intergenic |
| TGGGAATTATGGAGTGGTAA+TGG | 0.469776 | 2_1:-35109458 | Msa0206200:CDS |
| CCAGAGTTCCTCCCTGGAAA+AGG | 0.479687 | 2_1:-35106384 | Msa0206200:CDS |
| TATGGGCCCACTGATTATAA+TGG | 0.482729 | 2_1:-35104678 | Msa0206200:CDS |
| ATAACTACATTTGTTTCTAA+GGG | 0.483888 | 2_1:+35105584 | None:intergenic |
| GGCCACCTTACTATCACCAT+TGG | 0.485362 | 2_1:-35105949 | Msa0206200:intron |
| AAAGTTTGCTATAAATGAAA+AGG | 0.487165 | 2_1:+35104403 | None:intergenic |
| TTGGTCACCTTTATATCCTG+TGG | 0.488352 | 2_1:+35105556 | None:intergenic |
| TCTTACCAATGGTGATAGTA+AGG | 0.489855 | 2_1:+35105944 | None:intergenic |
| AGAGTTGCAATTGTTGGTGC+AGG | 0.491948 | 2_1:-35109797 | Msa0206200:CDS |
| AACATTCCAGAGTTCCTCCC+TGG | 0.496220 | 2_1:-35106390 | Msa0206200:CDS |
| GAGTTTGTGATTCTTTGCAT+TGG | 0.496307 | 2_1:-35106432 | Msa0206200:CDS |
| TCATCAGCTTCATATACAAC+AGG | 0.497177 | 2_1:+35109725 | None:intergenic |
| AACAAGACCATTATAATCAG+TGG | 0.502752 | 2_1:+35104671 | None:intergenic |
| ATCCCAAAATTGGCAATGAT+AGG | 0.503683 | 2_1:-35104972 | Msa0206200:CDS |
| AGAGTTACAGTAGTAGGCTC+AGG | 0.504894 | 2_1:-35106273 | Msa0206200:CDS |
| AAAAGACCCTTCTTTCTCCT+CGG | 0.506769 | 2_1:+35104720 | None:intergenic |
| CTAGAAAATGTGCTAACCAT+TGG | 0.509768 | 2_1:+35104904 | None:intergenic |
| ATGGTAATTGGAGGGGTGCA+TGG | 0.512734 | 2_1:-35104576 | Msa0206200:three_prime_UTR |
| CATGTTCCCTTGGAGCCAAA+AGG | 0.521090 | 2_1:+35109431 | None:intergenic |
| TATGTTATAACATAAACAAA+AGG | 0.522704 | 2_1:+35104341 | None:intergenic |
| GTGATAGTAAGGTGGCCAAA+AGG | 0.527800 | 2_1:+35105955 | None:intergenic |
| CTGATGAAGATATGAAGTCA+TGG | 0.535713 | 2_1:-35109478 | Msa0206200:CDS |
| TCTCACTTCAGCAGAATACA+TGG | 0.541686 | 2_1:-35104595 | Msa0206200:three_prime_UTR |
| TATGAAGCTGATGATGGTGT+TGG | 0.543117 | 2_1:-35109716 | Msa0206200:CDS |
| TGATGAACTCAGATAGATGC+AGG | 0.543614 | 2_1:+35109869 | None:intergenic |
| AGGTGGCCAAAAGGCCAAGA+AGG | 0.545267 | 2_1:+35105964 | None:intergenic |
| CCAAGAAGGAAGTGTTCTCC+GGG | 0.546254 | 2_1:+35105978 | None:intergenic |
| AGCAGCAGTTTCTTTGTCCA+AGG | 0.547408 | 2_1:+35106314 | None:intergenic |
| AATGTAGTTATTCTTGCCAC+AGG | 0.548864 | 2_1:-35105572 | Msa0206200:CDS |
| GCAGAATACATGGTAATTGG+AGG | 0.551730 | 2_1:-35104585 | Msa0206200:three_prime_UTR |
| GTGTAATCCGAGGAGAAAGA+AGG | 0.551929 | 2_1:-35104727 | Msa0206200:CDS |
| TCTTTGCAGAAGCTAAAGCT+TGG | 0.562474 | 2_1:+35105635 | None:intergenic |
| GTTGTATATGAAGCTGATGA+TGG | 0.564559 | 2_1:-35109722 | Msa0206200:CDS |
| GAAGCTGATGATGGTGTTGG+AGG | 0.565452 | 2_1:-35109713 | Msa0206200:CDS |
| ATTGCCTAGTATAAAAGAGA+TGG | 0.565732 | 2_1:-35104868 | Msa0206200:CDS |
| CAGAATACATGGTAATTGGA+GGG | 0.572921 | 2_1:-35104584 | Msa0206200:three_prime_UTR |
| TACCAAGAATTTCTCAACAA+AGG | 0.578314 | 2_1:-35109390 | Msa0206200:intron |
| ACGAGTCAATAAACTAAGAA+GGG | 0.580449 | 2_1:+35104374 | None:intergenic |
| TGATGAAGATATGAAGTCAT+GGG | 0.593792 | 2_1:-35109477 | Msa0206200:CDS |
| GGCAATGATAGGATATGCTG+AGG | 0.603017 | 2_1:-35104961 | Msa0206200:CDS |
| AGATCATGCATTGTTACTTG+TGG | 0.603581 | 2_1:-35104786 | Msa0206200:CDS |
| GCCGAATGTGCAGATGCAAA+TGG | 0.615588 | 2_1:-35106228 | Msa0206200:intron |
| AGAATACATGGTAATTGGAG+GGG | 0.618236 | 2_1:-35104583 | Msa0206200:three_prime_UTR |
| GTTCTATGGATAATCGTGCA+AGG | 0.619433 | 2_1:+35106092 | None:intergenic |
| AATAATGACAAATAAACCAA+AGG | 0.621111 | 2_1:+35104484 | None:intergenic |
| GAGCATATTTGCAAGCAAGT+AGG | 0.621227 | 2_1:+35109765 | None:intergenic |
| TTCTATGGATAATCGTGCAA+GGG | 0.621581 | 2_1:+35106093 | None:intergenic |
| ATTGTTGGTGCAGGAATCAG+TGG | 0.624826 | 2_1:-35109788 | Msa0206200:CDS |
| TTATCCATAGAACTGCGCGC+TGG | 0.626391 | 2_1:-35106082 | Msa0206200:CDS |
| ACAAGACCATTATAATCAGT+GGG | 0.632491 | 2_1:+35104672 | None:intergenic |
| TAGTATAAAAGAGATGGAGA+AGG | 0.639486 | 2_1:-35104862 | Msa0206200:CDS |
| TGTAATCCGAGGAGAAAGAA+GGG | 0.645189 | 2_1:-35104726 | Msa0206200:CDS |
| ACTAGTCCATACTTCTTCAG+TGG | 0.645916 | 2_1:+35105764 | None:intergenic |
| GAGACATGAAGTGTAATCCG+AGG | 0.647245 | 2_1:-35104737 | Msa0206200:CDS |
| TAGAGAAAGCACAACACTAG+TGG | 0.649415 | 2_1:-35104546 | Msa0206200:three_prime_UTR |
| CTAATGAAATGAGATGCCAA+TGG | 0.660576 | 2_1:-35104920 | Msa0206200:CDS |
| TACCAATGGTGATAGTAAGG+TGG | 0.665277 | 2_1:+35105947 | None:intergenic |
| AAGTCATGGGAATTATGGAG+TGG | 0.671476 | 2_1:-35109464 | Msa0206200:CDS |
| GGGAACATGGCATATTACAG+TGG | 0.699925 | 2_1:-35109417 | Msa0206200:CDS |
| GCAATGATAGGATATGCTGA+GGG | 0.702690 | 2_1:-35104960 | Msa0206200:CDS |
| ATGGTGTTGGAGGACTATGG+AGG | 0.798552 | 2_1:-35109703 | Msa0206200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTAAAATTGTGTTTTTA+TGG | - | chr2_1:35105188-35105207 | Msa0206200:intron | 10.0% |
| !!! | TTTGTATCAAATTTTTAAAT+TGG | - | chr2_1:35105400-35105419 | Msa0206200:intron | 10.0% |
| !! | TTCTCAATTTATTTATAATA+AGG | - | chr2_1:35105737-35105756 | Msa0206200:CDS | 10.0% |
| !!! | TAATAAGATAATAATTTTTC+GGG | - | chr2_1:35106688-35106707 | Msa0206200:intron | 10.0% |
| !!! | TATTAATTTATGATTTTCTT+GGG | + | chr2_1:35106736-35106755 | None:intergenic | 10.0% |
| !!! | TTATTAATTTATGATTTTCT+TGG | + | chr2_1:35106737-35106756 | None:intergenic | 10.0% |
| !! | AAACCAAAAATTAATATATT+CGG | + | chr2_1:35107165-35107184 | None:intergenic | 10.0% |
| !!! | TTAAAACTTTTAAAACATAA+CGG | + | chr2_1:35107232-35107251 | None:intergenic | 10.0% |
| !!! | TTAAAATTTTTAAAACGTAA+GGG | + | chr2_1:35107261-35107280 | None:intergenic | 10.0% |
| !!! | TAAAATCTAAAATAAACATA+AGG | - | chr2_1:35107552-35107571 | Msa0206200:intron | 10.0% |
| !!! | AAAATCTAAAATAAACATAA+GGG | - | chr2_1:35107553-35107572 | Msa0206200:intron | 10.0% |
| !!! | TAGTCTTATTATTTACAAAA+TGG | - | chr2_1:35104380-35104399 | Msa0206200:three_prime_UTR | 15.0% |
| !! | ATAATCAATATCAATAACTT+TGG | + | chr2_1:35104697-35104716 | None:intergenic | 15.0% |
| !!! | TTCATATTTCATTTTCTTTT+TGG | - | chr2_1:35104882-35104901 | Msa0206200:CDS | 15.0% |
| !!! | AAAAATTTTTCAGGATAATT+GGG | + | chr2_1:35105241-35105260 | None:intergenic | 15.0% |
| !!! | AAAAAATTTTTCAGGATAAT+TGG | + | chr2_1:35105242-35105261 | None:intergenic | 15.0% |
| !!! | ATTGCTTTAAAAAATTTTTC+AGG | + | chr2_1:35105250-35105269 | None:intergenic | 15.0% |
| !! | TTTGACAAGAAATAATATTT+AGG | - | chr2_1:35105269-35105288 | Msa0206200:intron | 15.0% |
| !! | TTGACAAGAAATAATATTTA+GGG | - | chr2_1:35105270-35105289 | Msa0206200:intron | 15.0% |
| !! | TTTATATCAAATTCTCAAAT+TGG | + | chr2_1:35105696-35105715 | None:intergenic | 15.0% |
| !! | AATTGAGAAAATTATCAAAT+TGG | + | chr2_1:35105726-35105745 | None:intergenic | 15.0% |
| !! | GAAAATTGTACATTTAATAT+AGG | + | chr2_1:35105957-35105976 | None:intergenic | 15.0% |
| !!! | AAACTCTTTAATTTAATACT+CGG | - | chr2_1:35106584-35106603 | Msa0206200:intron | 15.0% |
| !!! | TCTAAAATAATAAATTTGTC+CGG | - | chr2_1:35106622-35106641 | Msa0206200:intron | 15.0% |
| !!! | AGTTTTTCAATTTTTTACAT+TGG | + | chr2_1:35106660-35106679 | None:intergenic | 15.0% |
| !! | TCTAAATTAATAAATTTCTC+CGG | - | chr2_1:35107021-35107040 | Msa0206200:intron | 15.0% |
| !! | TTAAAACCTAAAATACATAA+TGG | + | chr2_1:35107203-35107222 | None:intergenic | 15.0% |
| !!! | ATGTTTTAAAAGTTTTAAGT+TGG | - | chr2_1:35107234-35107253 | Msa0206200:intron | 15.0% |
| !!! | CTTAAAATTTTTAAAACGTA+AGG | + | chr2_1:35107262-35107281 | None:intergenic | 15.0% |
| !!! | TTGAAACTTTTAAAACATAA+GGG | - | chr2_1:35107493-35107512 | Msa0206200:intron | 15.0% |
| !!! | GTTTATTTTAGATTTTAAGT+TGG | + | chr2_1:35107549-35107568 | None:intergenic | 15.0% |
| !! | TCTTACAAAAACAAATAAAT+TGG | + | chr2_1:35108324-35108343 | None:intergenic | 15.0% |
| !!! | TTCTTTTACTTTATCAAAAA+AGG | + | chr2_1:35108526-35108545 | None:intergenic | 15.0% |
| !!! | TTTTTTGATAAAGTAAAAGA+AGG | - | chr2_1:35108525-35108544 | Msa0206200:intron | 15.0% |
| !!! | TATGTTTTATATGTATTTGT+AGG | + | chr2_1:35108805-35108824 | None:intergenic | 15.0% |
| !!! | AATATTCCAGAAAATTTTAT+TGG | - | chr2_1:35109396-35109415 | Msa0206200:CDS | 15.0% |
| !! | TATGTTATAACATAAACAAA+AGG | + | chr2_1:35109867-35109886 | None:intergenic | 15.0% |
| !! | TTTGTTTATGTTATAACATA+TGG | - | chr2_1:35109867-35109886 | Msa0206200:five_prime_UTR | 15.0% |
| !! | TAAATAATAAGACTAATTGC+TGG | + | chr2_1:35104375-35104394 | None:intergenic | 20.0% |
| !!! | GTTATTGATATTGATTATGT+TGG | - | chr2_1:35104699-35104718 | Msa0206200:CDS | 20.0% |
| !! | TTTCATAATTACAAATGTGT+TGG | - | chr2_1:35104909-35104928 | Msa0206200:CDS | 20.0% |
| !! | AGAAACATTAGAGATAAATA+AGG | - | chr2_1:35104968-35104987 | Msa0206200:CDS | 20.0% |
| !! | GAAACATTAGAGATAAATAA+GGG | - | chr2_1:35104969-35104988 | Msa0206200:CDS | 20.0% |
| !!! | CTCTAGTAAAACTATATTTT+GGG | + | chr2_1:35105043-35105062 | None:intergenic | 20.0% |
| !!! | TCTCTAGTAAAACTATATTT+TGG | + | chr2_1:35105044-35105063 | None:intergenic | 20.0% |
| !!! | CTCTAGTAAAACTATATTTT+GGG | + | chr2_1:35105043-35105062 | None:intergenic | 20.0% |
| !!! | TCTCTAGTAAAACTATATTT+TGG | + | chr2_1:35105044-35105063 | None:intergenic | 20.0% |
| !!! | CAATTTCACAATTTTAACAA+AGG | - | chr2_1:35105163-35105182 | Msa0206200:intron | 20.0% |
| !! | TACAAAACATTTAATAGAGT+CGG | + | chr2_1:35105490-35105509 | None:intergenic | 20.0% |
| !! | ACTCTATTAATAACTCAAAA+TGG | + | chr2_1:35105667-35105686 | None:intergenic | 20.0% |
| !!! | ATTTTATGGTATCACTATAA+CGG | + | chr2_1:35105784-35105803 | None:intergenic | 20.0% |
| !!! | TTTATTTTAGATAGAAGAGA+TGG | - | chr2_1:35106002-35106021 | Msa0206200:CDS | 20.0% |
| !!! | TAACCAAAAATTGACTTTTT+AGG | - | chr2_1:35106245-35106264 | Msa0206200:CDS | 20.0% |
| !!! | TAAGCAAAAATTCACTTTTT+AGG | + | chr2_1:35106333-35106352 | None:intergenic | 20.0% |
| !! | CTCTATAAATTAATAATGTC+AGG | + | chr2_1:35107048-35107067 | None:intergenic | 20.0% |
| !!! | TTTGATCCATTATGTATTTT+AGG | - | chr2_1:35107194-35107213 | Msa0206200:intron | 20.0% |
| !!! | ATGTATTTTAGGTTTTAAGT+TGG | - | chr2_1:35107205-35107224 | Msa0206200:intron | 20.0% |
| !!! | ATGTTTTAAAAGTTTCAAGT+TGG | + | chr2_1:35107491-35107510 | None:intergenic | 20.0% |
| !!! | CTTGAAACTTTTAAAACATA+AGG | - | chr2_1:35107492-35107511 | Msa0206200:intron | 20.0% |
| !!! | TTGAAACTTTTAAGACATAA+AGG | - | chr2_1:35107522-35107541 | Msa0206200:intron | 20.0% |
| !!! | ATAACTACATTTGTTTCTAA+GGG | + | chr2_1:35108624-35108643 | None:intergenic | 20.0% |
| !!! | AATAACTACATTTGTTTCTA+AGG | + | chr2_1:35108625-35108644 | None:intergenic | 20.0% |
| !!! | TGAATATGCTTTTAAGTTTT+TGG | + | chr2_1:35108671-35108690 | None:intergenic | 20.0% |
| !!! | TCAATGTAATTTTGGAATAT+TGG | + | chr2_1:35108699-35108718 | None:intergenic | 20.0% |
| !! | CAAATCATACATAAGAAAAT+AGG | + | chr2_1:35108780-35108799 | None:intergenic | 20.0% |
| !!! | CTATTTTCTTATGTATGATT+TGG | - | chr2_1:35108778-35108797 | Msa0206200:intron | 20.0% |
| !!! | AATTTAAGATTAGCTTACAA+AGG | + | chr2_1:35108919-35108938 | None:intergenic | 20.0% |
| !! | TTGAAATATTAATAGAGTCA+AGG | + | chr2_1:35108945-35108964 | None:intergenic | 20.0% |
| !! | TGTAACAAAAACATAGATAA+AGG | + | chr2_1:35109011-35109030 | None:intergenic | 20.0% |
| !! | AAATATGTAAACCACTAAAT+TGG | + | chr2_1:35109132-35109151 | None:intergenic | 20.0% |
| !! | AATAATGACAAATAAACCAA+AGG | + | chr2_1:35109724-35109743 | None:intergenic | 20.0% |
| !!! | AAAGTTTGCTATAAATGAAA+AGG | + | chr2_1:35109805-35109824 | None:intergenic | 20.0% |
| !!! | AAAATTGGTATGCTTGTTTT+GGG | + | chr2_1:35104557-35104576 | None:intergenic | 25.0% |
| ! | GAATCTTATGTAAGGAATAA+TGG | + | chr2_1:35104670-35104689 | None:intergenic | 25.0% |
| ! | TTGGAATTGAATCTTATGTA+AGG | + | chr2_1:35104678-35104697 | None:intergenic | 25.0% |
| ! | AGAGATAAATAAGGGAAATA+TGG | - | chr2_1:35104977-35104996 | Msa0206200:CDS | 25.0% |
| !! | TCTAGAGTAAATCATCAAAT+TGG | - | chr2_1:35105369-35105388 | Msa0206200:intron | 25.0% |
| ! | TTCTCAAATGTTTCTTAGAT+TGG | - | chr2_1:35105461-35105480 | Msa0206200:intron | 25.0% |
| !! | AATGTCTTTTGGATCTTATT+TGG | + | chr2_1:35105531-35105550 | None:intergenic | 25.0% |
| !! | GTTAATGACATAATGTCTTT+TGG | + | chr2_1:35105542-35105561 | None:intergenic | 25.0% |
| !! | GTCTTTTGGATATTATTTAG+TGG | + | chr2_1:35105564-35105583 | None:intergenic | 25.0% |
| !! | TTTGAGTTATTAATAGAGTC+AGG | - | chr2_1:35105668-35105687 | Msa0206200:CDS | 25.0% |
| ! | TTGAGTTATTAATAGAGTCA+GGG | - | chr2_1:35105669-35105688 | Msa0206200:CDS | 25.0% |
| ! | TGAGCTATACTATTAAGAAA+AGG | - | chr2_1:35105859-35105878 | Msa0206200:intron | 25.0% |
| ! | GAGCTATACTATTAAGAAAA+GGG | - | chr2_1:35105860-35105879 | Msa0206200:intron | 25.0% |
| ! | AGTTTCTAAATTTCTGTCTT+TGG | - | chr2_1:35106039-35106058 | Msa0206200:CDS | 25.0% |
| ! | ATTATCAACAAATCACAATG+TGG | + | chr2_1:35106169-35106188 | None:intergenic | 25.0% |
| !!! | TTTTTGGTTATAATAGTGAC+CGG | + | chr2_1:35106235-35106254 | None:intergenic | 25.0% |
| !! | GAACCTAAAAAGTCAATTTT+TGG | + | chr2_1:35106251-35106270 | None:intergenic | 25.0% |
| ! | ATTGTACATACCAAACAAAA+AGG | + | chr2_1:35106941-35106960 | None:intergenic | 25.0% |
| ! | TAAATTAATAATGTCAGGAC+CGG | + | chr2_1:35107043-35107062 | None:intergenic | 25.0% |
| ! | AAAAATTAATATATTCGGCG+GGG | + | chr2_1:35107160-35107179 | None:intergenic | 25.0% |
| ! | CAAAAATTAATATATTCGGC+GGG | + | chr2_1:35107161-35107180 | None:intergenic | 25.0% |
| ! | CCAAAAATTAATATATTCGG+CGG | + | chr2_1:35107162-35107181 | None:intergenic | 25.0% |
| ! | TTAAACTCAATATCATGTTG+CGG | + | chr2_1:35107327-35107346 | None:intergenic | 25.0% |
| ! | AAGAGTTTACAAGGATATAT+TGG | + | chr2_1:35107611-35107630 | None:intergenic | 25.0% |
| ! | ACAAAGTTAAAGAGTTTACA+AGG | + | chr2_1:35107620-35107639 | None:intergenic | 25.0% |
| ! | TAAAGATTAACATGCTATCA+TGG | - | chr2_1:35107674-35107693 | Msa0206200:intron | 25.0% |
| ! | TAGTATTGTTGTAATGCAAA+GGG | + | chr2_1:35107712-35107731 | None:intergenic | 25.0% |
| ! | ATAGTATTGTTGTAATGCAA+AGG | + | chr2_1:35107713-35107732 | None:intergenic | 25.0% |
| ! | GACTGAATATTTACAAAAAC+AGG | - | chr2_1:35107739-35107758 | Msa0206200:intron | 25.0% |
| ! | TTGTTGAAACATATCTGAAA+TGG | - | chr2_1:35108412-35108431 | Msa0206200:intron | 25.0% |
| ! | TCTTGAAGAAAACTATGATT+AGG | + | chr2_1:35108468-35108487 | None:intergenic | 25.0% |
| ! | CTTTATCAAAAAAGGAATCA+GGG | + | chr2_1:35108518-35108537 | None:intergenic | 25.0% |
| ! | ACTTTATCAAAAAAGGAATC+AGG | + | chr2_1:35108519-35108538 | None:intergenic | 25.0% |
| !! | TTGAACTGTCAATGTAATTT+TGG | + | chr2_1:35108707-35108726 | None:intergenic | 25.0% |
| ! | AAAATTACATTGACAGTTCA+AGG | - | chr2_1:35108706-35108725 | Msa0206200:intron | 25.0% |
| !! | TAGTGGTTTACATATTTTCT+AGG | - | chr2_1:35109135-35109154 | Msa0206200:intron | 25.0% |
| !! | TGATCTCCAATAAAATTTTC+TGG | + | chr2_1:35109405-35109424 | None:intergenic | 25.0% |
| !!! | TTATGATCCTTTTTGTTTAG+AGG | - | chr2_1:35109570-35109589 | Msa0206200:CDS | 25.0% |
| !!! | CAATATATAGCTTTATCCTT+TGG | - | chr2_1:35109705-35109724 | Msa0206200:CDS | 25.0% |
| GAAAAAAGAGTTGCAATTGT+TGG | - | chr2_1:35104402-35104421 | Msa0206200:three_prime_UTR | 30.0% | |
| ! | GAAAATTGGTATGCTTGTTT+TGG | + | chr2_1:35104558-35104577 | None:intergenic | 30.0% |
| ! | ACCAATTTTCAGATTTTCCT+TGG | - | chr2_1:35104568-35104587 | Msa0206200:three_prime_UTR | 30.0% |
| ! | CCAATTTTCAGATTTTCCTT+GGG | - | chr2_1:35104569-35104588 | Msa0206200:three_prime_UTR | 30.0% |
| ! | TCTAGAACTTGCTTATTACT+TGG | + | chr2_1:35104618-35104637 | None:intergenic | 30.0% |
| TGATGAAGATATGAAGTCAT+GGG | - | chr2_1:35104728-35104747 | Msa0206200:CDS | 30.0% | |
| ATATGAAGTCATGGGAATTA+TGG | - | chr2_1:35104736-35104755 | Msa0206200:CDS | 30.0% | |
| TACCAAGAATTTCTCAACAA+AGG | - | chr2_1:35104815-35104834 | Msa0206200:CDS | 30.0% | |
| TACCTTTGTTGAGAAATTCT+TGG | + | chr2_1:35104820-35104839 | None:intergenic | 30.0% | |
| ! | ACCACAATAAGATTTTTCTC+TGG | - | chr2_1:35105137-35105156 | Msa0206200:intron | 30.0% |
| ACCAGAGAAAAATCTTATTG+TGG | + | chr2_1:35105141-35105160 | None:intergenic | 30.0% | |
| TTTGTTTCATTCTCACCTAT+GGG | + | chr2_1:35105333-35105352 | None:intergenic | 30.0% | |
| ATAGGTGAGAATGAAACAAA+GGG | - | chr2_1:35105333-35105352 | Msa0206200:intron | 30.0% | |
| !! | TTTTAAATTGGTGACTGACT+CGG | - | chr2_1:35105412-35105431 | Msa0206200:intron | 30.0% |
| AGAAACATTTGAGAAAGACA+TGG | + | chr2_1:35105456-35105475 | None:intergenic | 30.0% | |
| TTGTCAAACACTTCTCAAAT+TGG | + | chr2_1:35105635-35105654 | None:intergenic | 30.0% | |
| CAAATGACTTACTCTTAACT+TGG | + | chr2_1:35105837-35105856 | None:intergenic | 30.0% | |
| CAAGTTAAGAGTAAGTCATT+TGG | - | chr2_1:35105835-35105854 | Msa0206200:intron | 30.0% | |
| CATCCAATAAATGAAGTATG+TGG | - | chr2_1:35106270-35106289 | Msa0206200:CDS | 30.0% | |
| AGACCACATACTTCATTTAT+TGG | + | chr2_1:35106276-35106295 | None:intergenic | 30.0% | |
| TAATCAATAAACGACGTATG+TGG | + | chr2_1:35106308-35106327 | None:intergenic | 30.0% | |
| TATAATAGTGAGTTAGTGAC+CGG | - | chr2_1:35106351-35106370 | Msa0206200:CDS | 30.0% | |
| AGTACCTTGATAGACTTATT+TGG | - | chr2_1:35106378-35106397 | Msa0206200:CDS | 30.0% | |
| AGAACCAAATAAGTCTATCA+AGG | + | chr2_1:35106385-35106404 | None:intergenic | 30.0% | |
| TCATCTGCCACATTAATTTA+TGG | - | chr2_1:35106418-35106437 | Msa0206200:CDS | 30.0% | |
| TTAATTTATGGTCCAACGAT+TGG | - | chr2_1:35106430-35106449 | Msa0206200:CDS | 30.0% | |
| ! | GGAGATCCCTTTATAATTTT+CGG | - | chr2_1:35106709-35106728 | Msa0206200:intron | 30.0% |
| TTGGGACCGAAAATTATAAA+GGG | + | chr2_1:35106718-35106737 | None:intergenic | 30.0% | |
| GTACAGTAAATGTAAACAAG+AGG | + | chr2_1:35106811-35106830 | None:intergenic | 30.0% | |
| !! | GACTAATTTGCCTTTTTGTT+TGG | - | chr2_1:35106928-35106947 | Msa0206200:intron | 30.0% |
| ! | TGTGATACGCTTGATTTTAA+GGG | + | chr2_1:35107091-35107110 | None:intergenic | 30.0% |
| ! | TTGTGATACGCTTGATTTTA+AGG | + | chr2_1:35107092-35107111 | None:intergenic | 30.0% |
| ! | CCGCCGAATATATTAATTTT+TGG | - | chr2_1:35107159-35107178 | Msa0206200:intron | 30.0% |
| !! | AAGATTTGGGTTGACAATAT+GGG | + | chr2_1:35107412-35107431 | None:intergenic | 30.0% |
| !! | AAAGATTTGGGTTGACAATA+TGG | + | chr2_1:35107413-35107432 | None:intergenic | 30.0% |
| TGTCAACCCAAATCTTTAAT+CGG | - | chr2_1:35107416-35107435 | Msa0206200:intron | 30.0% | |
| ACTTGACCGATTAAAGATTT+GGG | + | chr2_1:35107425-35107444 | None:intergenic | 30.0% | |
| TTAAGACTTAATTGCGTGTT+TGG | + | chr2_1:35107580-35107599 | None:intergenic | 30.0% | |
| AGTTTGTGATTCTTTGCATT+GGG | - | chr2_1:35107774-35107793 | Msa0206200:intron | 30.0% | |
| AATAAGAGAGTTACAGTAGT+AGG | - | chr2_1:35107926-35107945 | Msa0206200:intron | 30.0% | |
| TTCAATCCATTAACTTCTAC+AGG | - | chr2_1:35108080-35108099 | Msa0206200:intron | 30.0% | |
| ! | TCTCCTAGATTTCAACATTT+TGG | - | chr2_1:35108148-35108167 | Msa0206200:intron | 30.0% |
| ! | CTCCTAGATTTCAACATTTT+GGG | - | chr2_1:35108149-35108168 | Msa0206200:intron | 30.0% |
| ACTACAATGTATCTTACCAA+TGG | + | chr2_1:35108275-35108294 | None:intergenic | 30.0% | |
| ! | CACTCTAAATTTTCAGAGAT+GGG | - | chr2_1:35108377-35108396 | Msa0206200:intron | 30.0% |
| ! | ACTCTAAATTTTCAGAGATG+GGG | - | chr2_1:35108378-35108397 | Msa0206200:intron | 30.0% |
| GAAATATCTGCATGTCAAAT+TGG | - | chr2_1:35108486-35108505 | Msa0206200:intron | 30.0% | |
| TGGTGATTTCTTTATCATGA+TGG | + | chr2_1:35108553-35108572 | None:intergenic | 30.0% | |
| !! | GTTTACATATTTTCTAGGAG+TGG | - | chr2_1:35109140-35109159 | Msa0206200:intron | 30.0% |
| ! | ATCCTATCATTGCCAATTTT+GGG | + | chr2_1:35109238-35109257 | None:intergenic | 30.0% |
| ! | TATCCTATCATTGCCAATTT+TGG | + | chr2_1:35109239-35109258 | None:intergenic | 30.0% |
| ATTGCCTAGTATAAAAGAGA+TGG | - | chr2_1:35109337-35109356 | Msa0206200:intron | 30.0% | |
| ! | TTCTCCATCTCTTTTATACT+AGG | + | chr2_1:35109344-35109363 | None:intergenic | 30.0% |
| TAGTATAAAAGAGATGGAGA+AGG | - | chr2_1:35109343-35109362 | Msa0206200:intron | 30.0% | |
| TGGAGAAGGATGTTAAATTA+TGG | - | chr2_1:35109357-35109376 | Msa0206200:intron | 30.0% | |
| GGAGAAGGATGTTAAATTAT+GGG | - | chr2_1:35109358-35109377 | Msa0206200:intron | 30.0% | |
| ACAAGACCATTATAATCAGT+GGG | + | chr2_1:35109536-35109555 | None:intergenic | 30.0% | |
| AACAAGACCATTATAATCAG+TGG | + | chr2_1:35109537-35109556 | None:intergenic | 30.0% | |
| ACGAGTCAATAAACTAAGAA+GGG | + | chr2_1:35109834-35109853 | None:intergenic | 30.0% | |
| !! | TTAGTTTATTGACTCGTCTA+TGG | - | chr2_1:35109837-35109856 | Msa0206200:five_prime_UTR | 30.0% |
| TGCAAATATGCTCTACAGAT+TGG | - | chr2_1:35104450-35104469 | Msa0206200:intron | 35.0% | |
| TCATCAGCTTCATATACAAC+AGG | + | chr2_1:35104483-35104502 | None:intergenic | 35.0% | |
| GTTGTATATGAAGCTGATGA+TGG | - | chr2_1:35104483-35104502 | Msa0206200:three_prime_UTR | 35.0% | |
| CCCAAGGAAAATCTGAAAAT+TGG | + | chr2_1:35104572-35104591 | None:intergenic | 35.0% | |
| ! | TCTTTTACAGAAGAATCCCA+AGG | + | chr2_1:35104588-35104607 | None:intergenic | 35.0% |
| CTGATGAAGATATGAAGTCA+TGG | - | chr2_1:35104727-35104746 | Msa0206200:CDS | 35.0% | |
| ! | CTTTGTTTCATTCTCACCTA+TGG | + | chr2_1:35105334-35105353 | None:intergenic | 35.0% |
| CATAGGTGAGAATGAAACAA+AGG | - | chr2_1:35105332-35105351 | Msa0206200:intron | 35.0% | |
| ! | GTTAATGACTCGATGTCTTT+TGG | + | chr2_1:35105578-35105597 | None:intergenic | 35.0% |
| !! | AGAAGTGTTTGACAAAGACA+TGG | - | chr2_1:35105640-35105659 | Msa0206200:CDS | 35.0% |
| AGTGAAATAATTACTCCCTC+CGG | - | chr2_1:35106213-35106232 | Msa0206200:intron | 35.0% | |
| CGTTGGACCATAAATTAATG+TGG | + | chr2_1:35106428-35106447 | None:intergenic | 35.0% | |
| ! | CCACTCATAAAATTCAGGTT+GGG | + | chr2_1:35106478-35106497 | None:intergenic | 35.0% |
| !!! | TTTTTTACATTGGCCCAAGT+CGG | + | chr2_1:35106650-35106669 | None:intergenic | 35.0% |
| CTTGGGACCGAAAATTATAA+AGG | + | chr2_1:35106719-35106738 | None:intergenic | 35.0% | |
| TCCAATGCATATAAACACAG+TGG | - | chr2_1:35106851-35106870 | Msa0206200:intron | 35.0% | |
| ACCACTGTGTTTATATGCAT+TGG | + | chr2_1:35106855-35106874 | None:intergenic | 35.0% | |
| CTAATTTACGTTGAGTCACA+AGG | - | chr2_1:35106877-35106896 | Msa0206200:intron | 35.0% | |
| TTCCAACGTGAATAACGTAA+GGG | + | chr2_1:35107290-35107309 | None:intergenic | 35.0% | |
| ATTCCAACGTGAATAACGTA+AGG | + | chr2_1:35107291-35107310 | None:intergenic | 35.0% | |
| CACTTGACCGATTAAAGATT+TGG | + | chr2_1:35107426-35107445 | None:intergenic | 35.0% | |
| GAGTTTGTGATTCTTTGCAT+TGG | - | chr2_1:35107773-35107792 | Msa0206200:intron | 35.0% | |
| CTTTGCATTGGGAAATATAG+TGG | - | chr2_1:35107785-35107804 | Msa0206200:intron | 35.0% | |
| CCTTACCTGTAAAAACTTCT+GGG | + | chr2_1:35107847-35107866 | None:intergenic | 35.0% | |
| ACCTTACCTGTAAAAACTTC+TGG | + | chr2_1:35107848-35107867 | None:intergenic | 35.0% | |
| AGGTAAGGTTATGCATTCTA+TGG | - | chr2_1:35107859-35107878 | Msa0206200:intron | 35.0% | |
| TTCTATGGATAATCGTGCAA+GGG | + | chr2_1:35108115-35108134 | None:intergenic | 35.0% | |
| TGCCCAAAATGTTGAAATCT+AGG | + | chr2_1:35108154-35108173 | None:intergenic | 35.0% | |
| !! | AACATTTTGGGCATTAGTCT+CGG | - | chr2_1:35108161-35108180 | Msa0206200:intron | 35.0% |
| TCTTACCAATGGTGATAGTA+AGG | + | chr2_1:35108264-35108283 | None:intergenic | 35.0% | |
| ! | GCACTCTAAATTTTCAGAGA+TGG | - | chr2_1:35108376-35108395 | Msa0206200:intron | 35.0% |
| AATGTAGTTATTCTTGCCAC+AGG | - | chr2_1:35108633-35108652 | Msa0206200:intron | 35.0% | |
| ATTCTTGCCACAGGATATAA+AGG | - | chr2_1:35108642-35108661 | Msa0206200:intron | 35.0% | |
| GTTCAAGGATTTCTCTCTAT+AGG | - | chr2_1:35108721-35108740 | Msa0206200:intron | 35.0% | |
| ! | GGTGGTTTACTCAAGAATTT+TGG | + | chr2_1:35108883-35108902 | None:intergenic | 35.0% |
| TACAAAGGCAGAGATCAAAT+TGG | + | chr2_1:35108904-35108923 | None:intergenic | 35.0% | |
| TACAGTAGTGACCAATTTAG+TGG | - | chr2_1:35109118-35109137 | Msa0206200:intron | 35.0% | |
| AATCTATGCTAAACCACTAC+AGG | - | chr2_1:35109192-35109211 | Msa0206200:intron | 35.0% | |
| GATGTATTATTTGCCTGTAG+TGG | + | chr2_1:35109208-35109227 | None:intergenic | 35.0% | |
| ATCCCAAAATTGGCAATGAT+AGG | - | chr2_1:35109233-35109252 | Msa0206200:intron | 35.0% | |
| CTAATGAAATGAGATGCCAA+TGG | - | chr2_1:35109285-35109304 | Msa0206200:intron | 35.0% | |
| ! | AGATCATGCATTGTTACTTG+TGG | - | chr2_1:35109419-35109438 | Msa0206200:CDS | 35.0% |
| TAGCACACCTCTAAACAAAA+AGG | + | chr2_1:35109580-35109599 | None:intergenic | 35.0% | |
| TCAGCAGAATACATGGTAAT+TGG | - | chr2_1:35109617-35109636 | Msa0206200:CDS | 35.0% | |
| CAGAATACATGGTAATTGGA+GGG | - | chr2_1:35109621-35109640 | Msa0206200:CDS | 35.0% | |
| AGAATACATGGTAATTGGAG+GGG | - | chr2_1:35109622-35109641 | Msa0206200:CDS | 35.0% | |
| GACGAGTCAATAAACTAAGA+AGG | + | chr2_1:35109835-35109854 | None:intergenic | 35.0% | |
| TGATGAACTCAGATAGATGC+AGG | + | chr2_1:35104339-35104358 | None:intergenic | 40.0% | |
| GAGCATATTTGCAAGCAAGT+AGG | + | chr2_1:35104443-35104462 | None:intergenic | 40.0% | |
| !! | TATGAAGCTGATGATGGTGT+TGG | - | chr2_1:35104489-35104508 | Msa0206200:three_prime_UTR | 40.0% |
| !!! | GGTATGCTTGTTTTGGGTTT+TGG | + | chr2_1:35104551-35104570 | None:intergenic | 40.0% |
| AAGTCATGGGAATTATGGAG+TGG | - | chr2_1:35104741-35104760 | Msa0206200:CDS | 40.0% | |
| TGGGAATTATGGAGTGGTAA+TGG | - | chr2_1:35104747-35104766 | Msa0206200:CDS | 40.0% | |
| !!! | AGTGGTAATGGATGTCCTTT+TGG | - | chr2_1:35104759-35104778 | Msa0206200:CDS | 40.0% |
| TGTAATATGCCATGTTCCCT+TGG | + | chr2_1:35104787-35104806 | None:intergenic | 40.0% | |
| GTGAGAATGAAACAAAGGGA+TGG | - | chr2_1:35105337-35105356 | Msa0206200:intron | 40.0% | |
| TGGTTATAATAGTGACCGGA+GGG | + | chr2_1:35106231-35106250 | None:intergenic | 40.0% | |
| TTGGTTATAATAGTGACCGG+AGG | + | chr2_1:35106232-35106251 | None:intergenic | 40.0% | |
| ! | CCCAACCTGAATTTTATGAG+TGG | - | chr2_1:35106475-35106494 | Msa0206200:intron | 40.0% |
| GCCACTCATAAAATTCAGGT+TGG | + | chr2_1:35106479-35106498 | None:intergenic | 40.0% | |
| GACAGCCACTCATAAAATTC+AGG | + | chr2_1:35106483-35106502 | None:intergenic | 40.0% | |
| !! | TTTGCTCAGACTAGTTTGCT+CGG | - | chr2_1:35106508-35106527 | Msa0206200:intron | 40.0% |
| ! | TTTTTACATTGGCCCAAGTC+GGG | + | chr2_1:35106649-35106668 | None:intergenic | 40.0% |
| ATCCCTTACGTTATTCACGT+TGG | - | chr2_1:35107285-35107304 | Msa0206200:intron | 40.0% | |
| CTCAATATCATGTTGCGGAA+TGG | + | chr2_1:35107322-35107341 | None:intergenic | 40.0% | |
| !! | ATTTGGGTTGACAATATGGG+TGG | + | chr2_1:35107409-35107428 | None:intergenic | 40.0% |
| ! | AAAGGCCCAGAAGTTTTTAC+AGG | - | chr2_1:35107839-35107858 | Msa0206200:intron | 40.0% |
| ! | CCCAGAAGTTTTTACAGGTA+AGG | - | chr2_1:35107844-35107863 | Msa0206200:intron | 40.0% |
| ! | TTCTATGGATTACTCTGCCT+TGG | - | chr2_1:35107874-35107893 | Msa0206200:intron | 40.0% |
| ACCATTTGCATCTGCACATT+CGG | + | chr2_1:35107981-35108000 | None:intergenic | 40.0% | |
| GTGACTCCTGTAGAAGTTAA+TGG | + | chr2_1:35108089-35108108 | None:intergenic | 40.0% | |
| GTTCTATGGATAATCGTGCA+AGG | + | chr2_1:35108116-35108135 | None:intergenic | 40.0% | |
| !!! | GAACTTTTAGTTCACAAGCC+CGG | - | chr2_1:35108209-35108228 | Msa0206200:intron | 40.0% |
| TACCAATGGTGATAGTAAGG+TGG | + | chr2_1:35108261-35108280 | None:intergenic | 40.0% | |
| AAGTTGCCACTGAAGAAGTA+TGG | - | chr2_1:35108435-35108454 | Msa0206200:intron | 40.0% | |
| ACTAGTCCATACTTCTTCAG+TGG | + | chr2_1:35108444-35108463 | None:intergenic | 40.0% | |
| TCTTTGCAGAAGCTAAAGCT+TGG | + | chr2_1:35108573-35108592 | None:intergenic | 40.0% | |
| ! | AGCTTTAGCTTCTGCAAAGA+AGG | - | chr2_1:35108573-35108592 | Msa0206200:intron | 40.0% |
| TTGGTCACCTTTATATCCTG+TGG | + | chr2_1:35108652-35108671 | None:intergenic | 40.0% | |
| AAAGGCAGAGATCAAATTGG+TGG | + | chr2_1:35108901-35108920 | None:intergenic | 40.0% | |
| GCAATGATAGGATATGCTGA+GGG | - | chr2_1:35109245-35109264 | Msa0206200:intron | 40.0% | |
| ! | GCATTGTTACTTGTGGCATA+TGG | - | chr2_1:35109426-35109445 | Msa0206200:CDS | 40.0% |
| TGTAATCCGAGGAGAAAGAA+GGG | - | chr2_1:35109479-35109498 | Msa0206200:CDS | 40.0% | |
| AAAAGACCCTTCTTTCTCCT+CGG | + | chr2_1:35109488-35109507 | None:intergenic | 40.0% | |
| ! | GAGAAAGAAGGGTCTTTTTG+CGG | - | chr2_1:35109490-35109509 | Msa0206200:CDS | 40.0% |
| CGGAGCTATTTGAACCATAT+GGG | - | chr2_1:35109510-35109529 | Msa0206200:CDS | 40.0% | |
| TTATAATCAGTGGGCCCATA+TGG | + | chr2_1:35109527-35109546 | None:intergenic | 40.0% | |
| ! | TATGGGCCCACTGATTATAA+TGG | - | chr2_1:35109527-35109546 | Msa0206200:CDS | 40.0% |
| TCTCACTTCAGCAGAATACA+TGG | - | chr2_1:35109610-35109629 | Msa0206200:CDS | 40.0% | |
| GCAGAATACATGGTAATTGG+AGG | - | chr2_1:35109620-35109639 | Msa0206200:CDS | 40.0% | |
| ! | TAGAGAAAGCACAACACTAG+TGG | - | chr2_1:35109659-35109678 | Msa0206200:CDS | 40.0% |
| AGAGTTGCAATTGTTGGTGC+AGG | - | chr2_1:35104408-35104427 | Msa0206200:three_prime_UTR | 45.0% | |
| ATTGTTGGTGCAGGAATCAG+TGG | - | chr2_1:35104417-35104436 | Msa0206200:three_prime_UTR | 45.0% | |
| ! | ATGATGGTGTTGGAGGACTA+TGG | - | chr2_1:35104499-35104518 | Msa0206200:three_prime_UTR | 45.0% |
| GGGAACATGGCATATTACAG+TGG | - | chr2_1:35104788-35104807 | Msa0206200:CDS | 45.0% | |
| GGTATCACTATAACGGTCGT+CGG | + | chr2_1:35105777-35105796 | None:intergenic | 45.0% | |
| AATAGTGAGTTAGTGACCGG+AGG | - | chr2_1:35106354-35106373 | Msa0206200:CDS | 45.0% | |
| ATAGTGAGTTAGTGACCGGA+GGG | - | chr2_1:35106355-35106374 | Msa0206200:CDS | 45.0% | |
| TTATGGTCCAACGATTGGTG+TGG | - | chr2_1:35106435-35106454 | Msa0206200:CDS | 45.0% | |
| TAATGCACCACACCAATCGT+TGG | + | chr2_1:35106445-35106464 | None:intergenic | 45.0% | |
| ACGATTGGTGTGGTGCATTA+TGG | - | chr2_1:35106445-35106464 | Msa0206200:CDS | 45.0% | |
| CGCTGCAACGTAATTCTAAG+AGG | - | chr2_1:35106902-35106921 | Msa0206200:intron | 45.0% | |
| ! | AAACTTCTGGGCCTTTTCCA+GGG | + | chr2_1:35107835-35107854 | None:intergenic | 45.0% |
| ! | AAAACTTCTGGGCCTTTTCC+AGG | + | chr2_1:35107836-35107855 | None:intergenic | 45.0% |
| AGCAGCAGTTTCTTTGTCCA+AGG | + | chr2_1:35107894-35107913 | None:intergenic | 45.0% | |
| AGAGTTACAGTAGTAGGCTC+AGG | - | chr2_1:35107932-35107951 | Msa0206200:intron | 45.0% | |
| !! | ACACTTCCTTCTTGGCCTTT+TGG | - | chr2_1:35108235-35108254 | Msa0206200:intron | 45.0% |
| GTGATAGTAAGGTGGCCAAA+AGG | + | chr2_1:35108253-35108272 | None:intergenic | 45.0% | |
| ACATCCTCGCATCCCAAAAT+TGG | - | chr2_1:35109223-35109242 | Msa0206200:intron | 45.0% | |
| !!! | ATTGCCAATTTTGGGATGCG+AGG | + | chr2_1:35109230-35109249 | None:intergenic | 45.0% |
| GGCAATGATAGGATATGCTG+AGG | - | chr2_1:35109244-35109263 | Msa0206200:intron | 45.0% | |
| GAGACATGAAGTGTAATCCG+AGG | - | chr2_1:35109468-35109487 | Msa0206200:CDS | 45.0% | |
| GTGTAATCCGAGGAGAAAGA+AGG | - | chr2_1:35109478-35109497 | Msa0206200:CDS | 45.0% | |
| GCGGAGCTATTTGAACCATA+TGG | - | chr2_1:35109509-35109528 | Msa0206200:CDS | 45.0% | |
| !!! | AGTAAAAAAATTTAATTTTA+TGG | + | chr2_1:35105798-35105817 | None:intergenic | 5.0% |
| !!! | ATAATAAGATAATAATTTTT+CGG | - | chr2_1:35106687-35106706 | Msa0206200:intron | 5.0% |
| !! | GAAGCTGATGATGGTGTTGG+AGG | - | chr2_1:35104492-35104511 | Msa0206200:three_prime_UTR | 50.0% |
| ! | ATGGTGTTGGAGGACTATGG+AGG | - | chr2_1:35104502-35104521 | Msa0206200:three_prime_UTR | 50.0% |
| !!! | TGGATGTCCTTTTGGCTCCA+AGG | - | chr2_1:35104767-35104786 | Msa0206200:CDS | 50.0% |
| !!! | GGATGTCCTTTTGGCTCCAA+GGG | - | chr2_1:35104768-35104787 | Msa0206200:CDS | 50.0% |
| CATGTTCCCTTGGAGCCAAA+AGG | + | chr2_1:35104777-35104796 | None:intergenic | 50.0% | |
| !!! | CTTTTGGCTCCAAGGGAACA+TGG | - | chr2_1:35104775-35104794 | Msa0206200:CDS | 50.0% |
| ! | GTCTATCAAGGTACTCCCTC+CGG | + | chr2_1:35106373-35106392 | None:intergenic | 50.0% |
| GGTGTGGTGCATTATGGCAT+TGG | - | chr2_1:35106451-35106470 | Msa0206200:intron | 50.0% | |
| AAATTTGTCCGGTCCCGACT+TGG | - | chr2_1:35106633-35106652 | Msa0206200:intron | 50.0% | |
| AATTTGTCCGGTCCCGACTT+GGG | - | chr2_1:35106634-35106653 | Msa0206200:intron | 50.0% | |
| ! | TGGGTTGACAATATGGGTGG+TGG | + | chr2_1:35107406-35107425 | None:intergenic | 50.0% |
| !! | GGGAGGAACTCTGGAATGTT+TGG | + | chr2_1:35107815-35107834 | None:intergenic | 50.0% |
| AACATTCCAGAGTTCCTCCC+TGG | - | chr2_1:35107815-35107834 | Msa0206200:intron | 50.0% | |
| GCCGAATGTGCAGATGCAAA+TGG | - | chr2_1:35107977-35107996 | Msa0206200:intron | 50.0% | |
| TTATCCATAGAACTGCGCGC+TGG | - | chr2_1:35108123-35108142 | Msa0206200:intron | 50.0% | |
| !! | CCAAGAAGGAAGTGTTCTCC+GGG | + | chr2_1:35108230-35108249 | None:intergenic | 50.0% |
| !! | GCCAAGAAGGAAGTGTTCTC+CGG | + | chr2_1:35108231-35108250 | None:intergenic | 50.0% |
| GGCCACCTTACTATCACCAT+TGG | - | chr2_1:35108256-35108275 | Msa0206200:intron | 50.0% | |
| ! | ATGGTAATTGGAGGGGTGCA+TGG | - | chr2_1:35109629-35109648 | Msa0206200:CDS | 50.0% |
| AGCAACCGAGTTCTCCCTTG+CGG | - | chr2_1:35105300-35105319 | Msa0206200:intron | 55.0% | |
| ! | CCTTTTCCAGGGAGGAACTC+TGG | + | chr2_1:35107824-35107843 | None:intergenic | 55.0% |
| CCAGAGTTCCTCCCTGGAAA+AGG | - | chr2_1:35107821-35107840 | Msa0206200:intron | 55.0% | |
| GAAACCAGCGCGCAGTTCTA+TGG | + | chr2_1:35108130-35108149 | None:intergenic | 55.0% | |
| CCCGGAGAACACTTCCTTCT+TGG | - | chr2_1:35108227-35108246 | Msa0206200:intron | 55.0% | |
| AGGTGGCCAAAAGGCCAAGA+AGG | + | chr2_1:35108244-35108263 | None:intergenic | 55.0% | |
| AACCGAGTTCTCCCTTGCGG+TGG | - | chr2_1:35105303-35105322 | Msa0206200:intron | 60.0% | |
| CTATGGGAACGCCACCGCAA+GGG | + | chr2_1:35105317-35105336 | None:intergenic | 60.0% | |
| ACATTGGCCCAAGTCGGGAC+CGG | + | chr2_1:35106644-35106663 | None:intergenic | 60.0% | |
| ! | CTTCTGGGCCTTTTCCAGGG+AGG | + | chr2_1:35107832-35107851 | None:intergenic | 60.0% |
| CGCCACCGCAAGGGAGAACT+CGG | + | chr2_1:35105308-35105327 | None:intergenic | 65.0% | |
| CCTATGGGAACGCCACCGCA+AGG | + | chr2_1:35105318-35105337 | None:intergenic | 65.0% | |
| CCTTGCGGTGGCGTTCCCAT+AGG | - | chr2_1:35105315-35105334 | Msa0206200:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 35104319 | 35109908 | 35104319 | ID=Msa0206200;Name=Msa0206200 |
| chr2_1 | mRNA | 35104319 | 35109908 | 35104319 | ID=Msa0206200-mRNA-1;Parent=Msa0206200;Name=Msa0206200-mRNA-1;_AED=0.04;_eAED=0.04;_QI=80|1|1|1|0.8|0.66|6|309|517 |
| chr2_1 | exon | 35104319 | 35104445 | 35104319 | ID=Msa0206200-mRNA-1:exon:11644;Parent=Msa0206200-mRNA-1 |
| chr2_1 | exon | 35104480 | 35105013 | 35104480 | ID=Msa0206200-mRNA-1:exon:11643;Parent=Msa0206200-mRNA-1 |
| chr2_1 | exon | 35105485 | 35105834 | 35105485 | ID=Msa0206200-mRNA-1:exon:11642;Parent=Msa0206200-mRNA-1 |
| chr2_1 | exon | 35105950 | 35106125 | 35105950 | ID=Msa0206200-mRNA-1:exon:11641;Parent=Msa0206200-mRNA-1 |
| chr2_1 | exon | 35106229 | 35106466 | 35106229 | ID=Msa0206200-mRNA-1:exon:11640;Parent=Msa0206200-mRNA-1 |
| chr2_1 | exon | 35109391 | 35109908 | 35109391 | ID=Msa0206200-mRNA-1:exon:11639;Parent=Msa0206200-mRNA-1 |
| chr2_1 | five_prime_UTR | 35109829 | 35109908 | 35109829 | ID=Msa0206200-mRNA-1:five_prime_utr;Parent=Msa0206200-mRNA-1 |
| chr2_1 | CDS | 35109391 | 35109828 | 35109391 | ID=Msa0206200-mRNA-1:cds;Parent=Msa0206200-mRNA-1 |
| chr2_1 | CDS | 35106229 | 35106466 | 35106229 | ID=Msa0206200-mRNA-1:cds;Parent=Msa0206200-mRNA-1 |
| chr2_1 | CDS | 35105950 | 35106125 | 35105950 | ID=Msa0206200-mRNA-1:cds;Parent=Msa0206200-mRNA-1 |
| chr2_1 | CDS | 35105485 | 35105834 | 35105485 | ID=Msa0206200-mRNA-1:cds;Parent=Msa0206200-mRNA-1 |
| chr2_1 | CDS | 35104662 | 35105013 | 35104662 | ID=Msa0206200-mRNA-1:cds;Parent=Msa0206200-mRNA-1 |
| chr2_1 | three_prime_UTR | 35104480 | 35104661 | 35104480 | ID=Msa0206200-mRNA-1:three_prime_utr;Parent=Msa0206200-mRNA-1 |
| chr2_1 | three_prime_UTR | 35104319 | 35104445 | 35104319 | ID=Msa0206200-mRNA-1:three_prime_utr;Parent=Msa0206200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
