Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213190 | XP_013464363.1 | 78.550 | 331 | 12 | 2 | 1 | 272 | 1 | 331 | 3.37e-172 | 489 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213190 | sp|Q9C8M1|PT153_ARATH | 60.479 | 334 | 63 | 6 | 1 | 271 | 1 | 328 | 7.13e-127 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213190 | A0A072VAK0 | 78.550 | 331 | 12 | 2 | 1 | 272 | 1 | 331 | 1.61e-172 | 489 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0191890 | Msa0213190 | 0.803699 | 3.078180e-49 | -8.615850e-47 |
| Msa0194860 | Msa0213190 | 0.807380 | 5.200028e-50 | -8.615850e-47 |
| Msa0194890 | Msa0213190 | 0.807803 | 4.228279e-50 | -8.615850e-47 |
| Msa0213190 | Msa0230370 | 0.821470 | 3.970033e-53 | -8.615850e-47 |
| Msa0213190 | Msa0269590 | 0.984798 | 1.275370e-161 | -8.615850e-47 |
| Msa0213190 | Msa0626270 | 0.823747 | 1.172937e-53 | -8.615850e-47 |
| Msa0213190 | Msa0664540 | 0.800869 | 1.177379e-48 | -8.615850e-47 |
| Msa0213190 | Msa0692880 | 0.803879 | 2.824192e-49 | -8.615850e-47 |
| Msa0213190 | Msa1262010 | 0.803031 | 4.232179e-49 | -8.615850e-47 |
| Msa0213190 | Msa1354200 | 0.806029 | 1.003291e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213190 | MtrunA17_Chr2g0312911 | 78.550 | 331 | 12 | 2 | 1 | 272 | 1 | 331 | 3.10e-176 | 489 |
| Msa0213190 | MtrunA17_Chr7g0270591 | 41.284 | 327 | 127 | 4 | 6 | 268 | 10 | 335 | 7.43e-77 | 238 |
| Msa0213190 | MtrunA17_Chr4g0069261 | 53.933 | 178 | 81 | 1 | 9 | 186 | 9 | 185 | 1.36e-54 | 181 |
| Msa0213190 | MtrunA17_Chr4g0069261 | 45.333 | 75 | 33 | 1 | 187 | 253 | 244 | 318 | 5.24e-14 | 71.2 |
| Msa0213190 | MtrunA17_Chr3g0137921 | 44.382 | 178 | 98 | 1 | 9 | 186 | 16 | 192 | 3.10e-44 | 153 |
| Msa0213190 | MtrunA17_Chr3g0137921 | 46.237 | 93 | 43 | 3 | 187 | 275 | 252 | 341 | 2.19e-14 | 72.4 |
| Msa0213190 | MtrunA17_Chr2g0307091 | 42.135 | 178 | 102 | 1 | 9 | 186 | 12 | 188 | 1.79e-41 | 145 |
| Msa0213190 | MtrunA17_Chr2g0307091 | 42.553 | 94 | 43 | 3 | 187 | 270 | 248 | 340 | 9.03e-13 | 67.4 |
| Msa0213190 | MtrunA17_Chr4g0063601 | 30.100 | 299 | 165 | 9 | 9 | 270 | 12 | 303 | 2.53e-24 | 99.8 |
| Msa0213190 | MtrunA17_Chr1g0160071 | 25.904 | 166 | 120 | 2 | 15 | 180 | 18 | 180 | 8.17e-12 | 64.7 |
| Msa0213190 | MtrunA17_Chr3g0114581 | 26.452 | 155 | 111 | 2 | 26 | 180 | 30 | 181 | 4.98e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0213190 | AT1G53660.1 | 60.479 | 334 | 63 | 6 | 1 | 271 | 1 | 328 | 7.25e-128 | 367 |
| Msa0213190 | AT1G53660.3 | 60.479 | 334 | 63 | 6 | 1 | 271 | 19 | 346 | 7.41e-128 | 367 |
| Msa0213190 | AT1G53660.4 | 60.201 | 299 | 56 | 5 | 30 | 271 | 2 | 294 | 3.21e-114 | 331 |
| Msa0213190 | AT3G14410.1 | 84.211 | 190 | 26 | 1 | 1 | 186 | 1 | 190 | 1.23e-112 | 328 |
| Msa0213190 | AT3G14410.1 | 74.725 | 91 | 16 | 2 | 187 | 275 | 250 | 335 | 7.83e-24 | 99.0 |
| Msa0213190 | AT1G53660.2 | 80.208 | 192 | 32 | 1 | 1 | 186 | 19 | 210 | 1.92e-108 | 314 |
| Msa0213190 | AT1G53660.5 | 55.000 | 240 | 45 | 5 | 89 | 271 | 1 | 234 | 1.96e-75 | 230 |
| Msa0213190 | AT4G32390.1 | 35.780 | 327 | 140 | 6 | 9 | 267 | 16 | 340 | 2.88e-55 | 182 |
| Msa0213190 | AT2G25520.1 | 36.036 | 333 | 140 | 7 | 9 | 270 | 16 | 346 | 3.03e-55 | 182 |
| Msa0213190 | AT5G11230.1 | 34.911 | 338 | 147 | 5 | 9 | 275 | 16 | 351 | 1.25e-53 | 177 |
| Msa0213190 | AT3G17430.2 | 54.011 | 187 | 84 | 2 | 1 | 186 | 1 | 186 | 1.48e-53 | 178 |
| Msa0213190 | AT3G17430.2 | 36.842 | 95 | 55 | 2 | 187 | 276 | 245 | 339 | 1.69e-14 | 73.2 |
| Msa0213190 | AT3G17430.1 | 54.011 | 187 | 84 | 2 | 1 | 186 | 1 | 186 | 1.48e-53 | 178 |
| Msa0213190 | AT3G17430.1 | 36.842 | 95 | 55 | 2 | 187 | 276 | 245 | 339 | 1.69e-14 | 73.2 |
| Msa0213190 | AT1G48230.1 | 54.545 | 187 | 83 | 2 | 1 | 186 | 1 | 186 | 7.17e-49 | 166 |
| Msa0213190 | AT1G48230.1 | 37.363 | 91 | 55 | 1 | 187 | 275 | 245 | 335 | 3.34e-14 | 72.0 |
| Msa0213190 | AT5G25400.1 | 42.697 | 178 | 101 | 1 | 9 | 186 | 16 | 192 | 1.90e-42 | 149 |
| Msa0213190 | AT5G25400.1 | 43.333 | 90 | 50 | 1 | 187 | 276 | 252 | 340 | 4.21e-15 | 74.7 |
| Msa0213190 | AT1G48230.2 | 54.867 | 113 | 51 | 0 | 74 | 186 | 1 | 113 | 7.70e-31 | 117 |
| Msa0213190 | AT1G48230.2 | 37.363 | 91 | 55 | 1 | 187 | 275 | 172 | 262 | 2.65e-14 | 72.0 |
| Msa0213190 | AT1G06470.4 | 27.072 | 181 | 131 | 1 | 9 | 188 | 73 | 253 | 1.45e-11 | 64.7 |
| Msa0213190 | AT1G06470.2 | 27.072 | 181 | 131 | 1 | 9 | 188 | 73 | 253 | 1.45e-11 | 64.7 |
| Msa0213190 | AT1G06470.1 | 27.072 | 181 | 131 | 1 | 9 | 188 | 73 | 253 | 1.45e-11 | 64.7 |
| Msa0213190 | AT1G06470.3 | 27.072 | 181 | 131 | 1 | 9 | 188 | 73 | 253 | 1.45e-11 | 64.7 |
| Msa0213190 | AT1G21870.1 | 27.097 | 155 | 110 | 2 | 26 | 180 | 30 | 181 | 2.05e-11 | 63.9 |
| Msa0213190 | AT1G77610.1 | 27.097 | 155 | 110 | 2 | 26 | 180 | 24 | 175 | 2.10e-11 | 63.9 |
Find 57 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAACAATCATCAATTTATT+TGG | 0.171281 | 2_1:-55825415 | Msa0213190:CDS |
| TCTTTAATTACTCACATTTC+AGG | 0.218274 | 2_1:+55827202 | None:intergenic |
| AATTTATTTGGTTACGGAAT+TGG | 0.268156 | 2_1:-55825403 | Msa0213190:intron |
| ATCATGTCATTGATTAGTTT+TGG | 0.283357 | 2_1:-55825942 | Msa0213190:CDS |
| CTTCTTCAGTAGTGCCAATT+GGG | 0.295388 | 2_1:-55826380 | Msa0213190:CDS |
| GCTTTAACCATTCGTGTTGC+TGG | 0.308224 | 2_1:-55825496 | Msa0213190:CDS |
| ATGGTGAGATAAATATAAAC+TGG | 0.316407 | 2_1:-55825902 | Msa0213190:CDS |
| TAATAACTTCAAGTTGAAAA+AGG | 0.338824 | 2_1:-55824533 | Msa0213190:CDS |
| GGAGTTCTAGTAGCTTCTTA+TGG | 0.357987 | 2_1:-55825921 | Msa0213190:CDS |
| TGCTGGAGTTGTTAAGGATT+GGG | 0.362847 | 2_1:-55825479 | Msa0213190:CDS |
| ATCATCAATTTATTTGGTTA+CGG | 0.367666 | 2_1:-55825409 | Msa0213190:CDS |
| AAGGCTGAGATTCCTGCCTT+TGG | 0.369517 | 2_1:+55824464 | None:intergenic |
| AATTAACTTTCCTTATCCTT+TGG | 0.374642 | 2_1:-55827397 | Msa0213190:CDS |
| AGGCTGAGATTCCTGCCTTT+GGG | 0.384215 | 2_1:+55824465 | None:intergenic |
| GCTTCTTCAGTAGTGCCAAT+TGG | 0.403232 | 2_1:-55826381 | Msa0213190:CDS |
| TCGTGTTGCTGGAGTTGTTA+AGG | 0.405129 | 2_1:-55825485 | Msa0213190:CDS |
| AAAACTTACCTTTAGAACTT+TGG | 0.405574 | 2_1:+55827323 | None:intergenic |
| CACCGACAACACCTCCCATT+TGG | 0.408580 | 2_1:+55825865 | None:intergenic |
| TGTATTAACCAAAGTTCTAA+AGG | 0.413172 | 2_1:-55827331 | Msa0213190:intron |
| AACAAGCTCAGAAGCATTTG+AGG | 0.419806 | 2_1:+55824495 | None:intergenic |
| CCATGTTTGCAATGACACTT+TGG | 0.429649 | 2_1:-55826356 | Msa0213190:CDS |
| AGCTCTAAGACTTATCTTCA+TGG | 0.442399 | 2_1:-55825841 | Msa0213190:CDS |
| CGTATAATCCTCCGTTCAAA+AGG | 0.449756 | 2_1:-55828743 | Msa0213190:five_prime_UTR |
| TCAGAAGCATTTGAGGAGTC+AGG | 0.451298 | 2_1:+55824502 | None:intergenic |
| TTGCTGGAGTTGTTAAGGAT+TGG | 0.451598 | 2_1:-55825480 | Msa0213190:CDS |
| AATATTTATTCAGCCATTGC+AGG | 0.452569 | 2_1:-55824568 | Msa0213190:intron |
| AGAGTCAATGCCAAAGGATA+AGG | 0.455292 | 2_1:+55827387 | None:intergenic |
| CAAATGCAACAGAAATATAC+AGG | 0.468219 | 2_1:+55826316 | None:intergenic |
| GAGATAAATATAAACTGGGT+TGG | 0.473059 | 2_1:-55825897 | Msa0213190:CDS |
| TACCAAATGGGAGGTGTTGT+CGG | 0.484375 | 2_1:-55825867 | Msa0213190:CDS |
| ATTGCAAACATGGCCCCAAT+TGG | 0.490984 | 2_1:+55826366 | None:intergenic |
| GGTTGGAGTAGTTTACCAAA+TGG | 0.498532 | 2_1:-55825880 | Msa0213190:CDS |
| GTTGAAGAAGATTTGACCGC+TGG | 0.521002 | 2_1:+55828479 | None:intergenic |
| TTTGCAATGACACTTTGGCT+TGG | 0.522777 | 2_1:-55826351 | Msa0213190:CDS |
| CCAAAGTGTCATTGCAAACA+TGG | 0.524949 | 2_1:+55826356 | None:intergenic |
| GTTGGAGTAGTTTACCAAAT+GGG | 0.525406 | 2_1:-55825879 | Msa0213190:CDS |
| GGCATTGACTCTACTTCACA+TGG | 0.530196 | 2_1:-55827376 | Msa0213190:CDS |
| AAACAGAAAGAAGACGAAGA+AGG | 0.531803 | 2_1:+55828694 | None:intergenic |
| TTTGTGCTTGGAGTAGCCGC+AGG | 0.570601 | 2_1:-55825996 | Msa0213190:CDS |
| CACTTGTGTGTGAAATCACA+AGG | 0.571090 | 2_1:+55825518 | None:intergenic |
| TGTTGAATCTACCCAAAGGC+AGG | 0.571557 | 2_1:-55824476 | Msa0213190:CDS |
| TGGAGTTGTTAAGGATTGGG+TGG | 0.576236 | 2_1:-55825476 | Msa0213190:CDS |
| TGGAGTAGCCGCAGGACTCG+AGG | 0.577487 | 2_1:-55825988 | Msa0213190:CDS |
| CGGTCAAATCTTCTTCAACA+AGG | 0.578055 | 2_1:-55828475 | Msa0213190:intron |
| ATGGCGGATCGTAAGAATGA+AGG | 0.581580 | 2_1:-55828543 | Msa0213190:CDS |
| CTCTACATTGCTCTCTCCAG+CGG | 0.583803 | 2_1:-55828495 | Msa0213190:CDS |
| GTAGAGAAGAAGATAAGCGT+AGG | 0.602991 | 2_1:+55828512 | None:intergenic |
| TTCTTCAGTAGTGCCAATTG+GGG | 0.621525 | 2_1:-55826379 | Msa0213190:CDS |
| TGAAGTAGAGTCAATGCCAA+AGG | 0.622034 | 2_1:+55827381 | None:intergenic |
| AACAACTCCAGCAACACGAA+TGG | 0.626238 | 2_1:+55825489 | None:intergenic |
| ATATGCTGCTACACCTGCAA+TGG | 0.626595 | 2_1:+55824555 | None:intergenic |
| TGGTGAGATAAATATAAACT+GGG | 0.629813 | 2_1:-55825901 | Msa0213190:CDS |
| TGCATTTGCACAAATGCTGA+AGG | 0.631234 | 2_1:-55826301 | Msa0213190:CDS |
| GGAGTAGTTTACCAAATGGG+AGG | 0.646209 | 2_1:-55825876 | Msa0213190:CDS |
| AGCTTGTTGAATCTACCCAA+AGG | 0.647675 | 2_1:-55824480 | Msa0213190:CDS |
| TGCAACAGAAATATACAGGT+AGG | 0.669178 | 2_1:+55826320 | None:intergenic |
| GCTCATCACCTCGAGTCCTG+CGG | 0.678078 | 2_1:+55825980 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAAATTCAAATTGTTT+TGG | - | chr2_1:55824760-55824779 | Msa0213190:intron | 10.0% |
| !! | TTTAATGAAATCAATTATTA+AGG | + | chr2_1:55826159-55826178 | None:intergenic | 10.0% |
| !!! | TAGGATTAGTTTTTTTTTTT+AGG | - | chr2_1:55824262-55824281 | Msa0213190:intron | 15.0% |
| !! | CAATAAAATTGTACAAAAAT+TGG | + | chr2_1:55824518-55824537 | None:intergenic | 15.0% |
| !!! | CAATTTTTGTACAATTTTAT+TGG | - | chr2_1:55824516-55824535 | Msa0213190:CDS | 15.0% |
| !!! | TCATTGATTAATTTCTTAAT+TGG | - | chr2_1:55824628-55824647 | Msa0213190:intron | 15.0% |
| !! | ATTAATTATATGTTTCTTGT+AGG | - | chr2_1:55825366-55825385 | Msa0213190:intron | 15.0% |
| !!! | CAAATTAATTTCTATGTTTT+AGG | - | chr2_1:55825859-55825878 | Msa0213190:CDS | 15.0% |
| !! | TCAATAAAAAAAATCCAAAT+GGG | + | chr2_1:55825980-55825999 | None:intergenic | 15.0% |
| !! | ATCAATAAAAAAAATCCAAA+TGG | + | chr2_1:55825981-55826000 | None:intergenic | 15.0% |
| !! | TTAACAATCATCAATTTATT+TGG | - | chr2_1:55827202-55827221 | Msa0213190:intron | 15.0% |
| !! | TACTCAAATTAAAAGTTAAA+TGG | - | chr2_1:55827910-55827929 | Msa0213190:intron | 15.0% |
| !!! | GCTTTTTTGTTTAATTGAAA+TGG | - | chr2_1:55824441-55824460 | Msa0213190:intron | 20.0% |
| !!! | AATGTAATGCATTTTCTTTA+TGG | - | chr2_1:55824999-55825018 | Msa0213190:intron | 20.0% |
| !!! | TAAAGGTAAGTTTTAATGTT+TGG | - | chr2_1:55825303-55825322 | Msa0213190:intron | 20.0% |
| !! | GTAGATTATAGCTTATTTAT+AGG | - | chr2_1:55825446-55825465 | Msa0213190:CDS | 20.0% |
| !!! | TATTTATAGGTTTTCATGTA+TGG | - | chr2_1:55825459-55825478 | Msa0213190:CDS | 20.0% |
| !!! | ATTTATAGGTTTTCATGTAT+GGG | - | chr2_1:55825460-55825479 | Msa0213190:CDS | 20.0% |
| !!! | TTTCTTTAGTTTTGTGAATA+TGG | - | chr2_1:55826019-55826038 | Msa0213190:intron | 20.0% |
| !!! | TTCTTTAGTTTTGTGAATAT+GGG | - | chr2_1:55826020-55826039 | Msa0213190:intron | 20.0% |
| !! | GTAAGATATATAATTACAAC+TGG | + | chr2_1:55826203-55826222 | None:intergenic | 20.0% |
| !!! | TGTTATTTTCAACAATAGTT+AGG | - | chr2_1:55826369-55826388 | Msa0213190:CDS | 20.0% |
| !! | AACTAGAAATCATACATAAA+TGG | + | chr2_1:55826404-55826423 | None:intergenic | 20.0% |
| !! | TTTAAAAGAATCAGATTTGT+TGG | - | chr2_1:55826467-55826486 | Msa0213190:intron | 20.0% |
| !!! | TCATGGAAATTTTTGTTAAA+CGG | - | chr2_1:55826793-55826812 | Msa0213190:intron | 20.0% |
| !! | ATCATCAATTTATTTGGTTA+CGG | - | chr2_1:55827208-55827227 | Msa0213190:intron | 20.0% |
| !! | AAAGATAATTAAACAATCCA+GGG | - | chr2_1:55827337-55827356 | Msa0213190:CDS | 20.0% |
| !!! | TTTTGTTTATCGACATTTAT+TGG | - | chr2_1:55827569-55827588 | Msa0213190:intron | 20.0% |
| !!! | TTTTCCTATAAATAATGTGT+CGG | - | chr2_1:55827618-55827637 | Msa0213190:intron | 20.0% |
| !!! | TACAAATTAGATTAGTTGTA+AGG | - | chr2_1:55827940-55827959 | Msa0213190:intron | 20.0% |
| !!! | TAATAACTTCAAGTTGAAAA+AGG | - | chr2_1:55828084-55828103 | Msa0213190:intron | 20.0% |
| !! | GTATAAAAAGAAACACTATA+AGG | + | chr2_1:55828267-55828286 | None:intergenic | 20.0% |
| !!! | TATACAGCATTTTTTATGAT+TGG | - | chr2_1:55828643-55828662 | Msa0213190:five_prime_UTR | 20.0% |
| !!! | ATACAGCATTTTTTATGATT+GGG | - | chr2_1:55828644-55828663 | Msa0213190:five_prime_UTR | 20.0% |
| !!! | TAGGTTAGTTGAATTTTTTG+AGG | - | chr2_1:55824281-55824300 | Msa0213190:intron | 25.0% |
| !!! | TTGGTTTTGCTTTAGAATTA+TGG | - | chr2_1:55824647-55824666 | Msa0213190:intron | 25.0% |
| !!! | TTTAGAATTATGGTCTTGTT+TGG | - | chr2_1:55824657-55824676 | Msa0213190:intron | 25.0% |
| ! | ACAGTAGATAAGTTCAAATA+AGG | - | chr2_1:55824911-55824930 | Msa0213190:intron | 25.0% |
| !! | CTCAAATCAAACATACTTTT+TGG | + | chr2_1:55824941-55824960 | None:intergenic | 25.0% |
| !!! | AGTATGTTTGATTTGAGAAA+TGG | - | chr2_1:55824944-55824963 | Msa0213190:intron | 25.0% |
| !! | AATGCATTTTCTTTATGGTT+TGG | - | chr2_1:55825004-55825023 | Msa0213190:intron | 25.0% |
| ! | AATTAACTTTCCTTATCCTT+TGG | - | chr2_1:55825220-55825239 | Msa0213190:intron | 25.0% |
| !! | TGTATTAACCAAAGTTCTAA+AGG | - | chr2_1:55825286-55825305 | Msa0213190:intron | 25.0% |
| !!! | AAAACTTACCTTTAGAACTT+TGG | + | chr2_1:55825297-55825316 | None:intergenic | 25.0% |
| ! | TCTTTAATTACTCACATTTC+AGG | + | chr2_1:55825418-55825437 | None:intergenic | 25.0% |
| ! | TCACTAGAATGTTAAAAAGT+GGG | - | chr2_1:55825517-55825536 | Msa0213190:CDS | 25.0% |
| !!! | ATCAAGAAGATATTTTTCGA+GGG | - | chr2_1:55825712-55825731 | Msa0213190:intron | 25.0% |
| ! | TAGAGTAACTATGAAACAAA+TGG | + | chr2_1:55825839-55825858 | None:intergenic | 25.0% |
| !!! | TTAGTTTTCAAAACAAACTG+TGG | + | chr2_1:55825893-55825912 | None:intergenic | 25.0% |
| ! | TCTTACATTTATTGACATCA+AGG | - | chr2_1:55826126-55826145 | Msa0213190:intron | 25.0% |
| ! | ATATAATTACAACTGGAACT+TGG | + | chr2_1:55826196-55826215 | None:intergenic | 25.0% |
| !!! | GATTTCTAGTTATTTTCCAA+TGG | - | chr2_1:55826413-55826432 | Msa0213190:intron | 25.0% |
| !! | TTTTCCAATGGTAATCTTAA+TGG | - | chr2_1:55826425-55826444 | Msa0213190:intron | 25.0% |
| !!! | ATCATGTCATTGATTAGTTT+TGG | - | chr2_1:55826675-55826694 | Msa0213190:intron | 25.0% |
| ! | ATGGTGAGATAAATATAAAC+TGG | - | chr2_1:55826715-55826734 | Msa0213190:intron | 25.0% |
| ! | TGGTGAGATAAATATAAACT+GGG | - | chr2_1:55826716-55826735 | Msa0213190:intron | 25.0% |
| !! | GAAATTTTTGTTAAACGGAA+GGG | - | chr2_1:55826798-55826817 | Msa0213190:intron | 25.0% |
| ! | AATTTATTTGGTTACGGAAT+TGG | - | chr2_1:55827214-55827233 | Msa0213190:intron | 25.0% |
| ! | ATGAGAAAGGAAAATTTAGA+AGG | + | chr2_1:55827261-55827280 | None:intergenic | 25.0% |
| ! | ATGTTAAGAAAAATCCTCAA+GGG | + | chr2_1:55827292-55827311 | None:intergenic | 25.0% |
| ! | AATGTTAAGAAAAATCCTCA+AGG | + | chr2_1:55827293-55827312 | None:intergenic | 25.0% |
| ! | CAAAGATAATTAAACAATCC+AGG | - | chr2_1:55827336-55827355 | Msa0213190:CDS | 25.0% |
| ! | TTATATAAAGGGACAAAAAG+AGG | + | chr2_1:55827501-55827520 | None:intergenic | 25.0% |
| !! | TCTTTTTGTCCCTTTATATA+AGG | - | chr2_1:55827500-55827519 | Msa0213190:intron | 25.0% |
| !! | CTTTTTGTCCCTTTATATAA+GGG | - | chr2_1:55827501-55827520 | Msa0213190:intron | 25.0% |
| ! | AAATCCGACACATTATTTAT+AGG | + | chr2_1:55827625-55827644 | None:intergenic | 25.0% |
| ! | ATAAGGAAAAGCAAAAATGT+GGG | + | chr2_1:55828250-55828269 | None:intergenic | 25.0% |
| ! | TATAAGGAAAAGCAAAAATG+TGG | + | chr2_1:55828251-55828270 | None:intergenic | 25.0% |
| ! | GTCTTATAAACAATTTCAGT+CGG | - | chr2_1:55828416-55828435 | Msa0213190:intron | 25.0% |
| ! | TCTTATAAACAATTTCAGTC+GGG | - | chr2_1:55828417-55828436 | Msa0213190:intron | 25.0% |
| !!! | TCTCTTTGTTTTTGCAACAA+TGG | - | chr2_1:55824055-55824074 | Msa0213190:intron | 30.0% |
| AAACAAGTAAAGCATGCAAA+AGG | + | chr2_1:55824186-55824205 | None:intergenic | 30.0% | |
| !! | TCTGTGTTGATTTATAAGCT+AGG | - | chr2_1:55824243-55824262 | Msa0213190:intron | 30.0% |
| ! | ATTGTGTTGTTGATTGGAAT+TGG | - | chr2_1:55824304-55824323 | Msa0213190:intron | 30.0% |
| GATGCTGATGAATCAAATTA+AGG | - | chr2_1:55824342-55824361 | Msa0213190:intron | 30.0% | |
| ! | ATGGAAATGTTGTCTGAAAT+AGG | - | chr2_1:55824460-55824479 | Msa0213190:intron | 30.0% |
| ! | TGGAAATGTTGTCTGAAATA+GGG | - | chr2_1:55824461-55824480 | Msa0213190:intron | 30.0% |
| ! | TTGATTTGAGAAATGGATGA+AGG | - | chr2_1:55824951-55824970 | Msa0213190:intron | 30.0% |
| AAGTATTATTGTGTCCTGTT+TGG | - | chr2_1:55825049-55825068 | Msa0213190:intron | 30.0% | |
| GCATAAATCTATAACCAAAC+AGG | + | chr2_1:55825066-55825085 | None:intergenic | 30.0% | |
| GTTGTTATGTATCTATCTGA+TGG | - | chr2_1:55825140-55825159 | Msa0213190:intron | 30.0% | |
| !! | TGTTTGGTGTAATGTGTTAT+TGG | - | chr2_1:55825319-55825338 | Msa0213190:intron | 30.0% |
| !! | ATGTTTCTTGTAGGTTTTGA+AGG | - | chr2_1:55825375-55825394 | Msa0213190:intron | 30.0% |
| ! | GTTTTCATGTATGGGTATTT+TGG | - | chr2_1:55825468-55825487 | Msa0213190:CDS | 30.0% |
| GTCACTAGAATGTTAAAAAG+TGG | - | chr2_1:55825516-55825535 | Msa0213190:CDS | 30.0% | |
| ! | TTAGCTGCAAATTTTCAGTA+TGG | - | chr2_1:55825591-55825610 | Msa0213190:intron | 30.0% |
| !!! | TGACAGATTTTGGGATTAAT+GGG | + | chr2_1:55825637-55825656 | None:intergenic | 30.0% |
| CTCGAAAAATATCTTCTTGA+TGG | + | chr2_1:55825713-55825732 | None:intergenic | 30.0% | |
| ! | CATCAAGAAGATATTTTTCG+AGG | - | chr2_1:55825711-55825730 | Msa0213190:intron | 30.0% |
| AACAAAGATGCAGAAATTTC+TGG | + | chr2_1:55825950-55825969 | None:intergenic | 30.0% | |
| ! | TTTCTGCATCTTTGTTGATT+AGG | - | chr2_1:55825954-55825973 | Msa0213190:CDS | 30.0% |
| !!! | TTAGTTTTGTGAATATGGGT+TGG | - | chr2_1:55826024-55826043 | Msa0213190:intron | 30.0% |
| !!! | TAGTTTTGTGAATATGGGTT+GGG | - | chr2_1:55826025-55826044 | Msa0213190:intron | 30.0% |
| CAAATGCAACAGAAATATAC+AGG | + | chr2_1:55826304-55826323 | None:intergenic | 30.0% | |
| TTAGCCATTAAGATTACCAT+TGG | + | chr2_1:55826432-55826451 | None:intergenic | 30.0% | |
| GAGATAAATATAAACTGGGT+TGG | - | chr2_1:55826720-55826739 | Msa0213190:intron | 30.0% | |
| ! | GGAAATTTTTGTTAAACGGA+AGG | - | chr2_1:55826797-55826816 | Msa0213190:intron | 30.0% |
| !! | ACATAATACATGACGGATAT+AGG | + | chr2_1:55826837-55826856 | None:intergenic | 30.0% |
| CAATTGAGGATAAGTATAAC+AGG | + | chr2_1:55827046-55827065 | None:intergenic | 30.0% | |
| AAGGGATTATCAAATGAGAA+AGG | + | chr2_1:55827274-55827293 | None:intergenic | 30.0% | |
| TTTATTGGTCAAAGTGGTAA+TGG | - | chr2_1:55827584-55827603 | Msa0213190:intron | 30.0% | |
| !!! | CTTTTTTACGATTTGAGACT+CGG | + | chr2_1:55827762-55827781 | None:intergenic | 30.0% |
| ACAGTATTTGTACTTCTGTA+AGG | + | chr2_1:55827891-55827910 | None:intergenic | 30.0% | |
| ! | ATTAGATTAGTTGTAAGGCT+TGG | - | chr2_1:55827945-55827964 | Msa0213190:intron | 30.0% |
| AATATTTATTCAGCCATTGC+AGG | - | chr2_1:55828049-55828068 | Msa0213190:intron | 30.0% | |
| ATACATACATTGAGTACTTC+AGG | + | chr2_1:55828199-55828218 | None:intergenic | 30.0% | |
| ATCTACTATTTGTTCCCATA+GGG | + | chr2_1:55828306-55828325 | None:intergenic | 30.0% | |
| TATCTACTATTTGTTCCCAT+AGG | + | chr2_1:55828307-55828326 | None:intergenic | 30.0% | |
| ! | ATAGATATAAACAAGCGTTG+TGG | - | chr2_1:55828383-55828402 | Msa0213190:intron | 30.0% |
| TTGTCAAAATTCAAATGCCA+TGG | + | chr2_1:55828524-55828543 | None:intergenic | 30.0% | |
| ATTATCACTCTGGATAACTT+TGG | + | chr2_1:55828549-55828568 | None:intergenic | 30.0% | |
| GCTTCAAAAAATTATCACTC+TGG | + | chr2_1:55828559-55828578 | None:intergenic | 30.0% | |
| TGAATCACTAAGATTGAAAC+TGG | + | chr2_1:55828587-55828606 | None:intergenic | 30.0% | |
| CATAAAAAATGCTGTATACC+CGG | + | chr2_1:55828641-55828660 | None:intergenic | 30.0% | |
| !!! | ATTTTTTATGATTGGGCCTT+TGG | - | chr2_1:55828651-55828670 | Msa0213190:five_prime_UTR | 30.0% |
| !!! | TTTTTTATGATTGGGCCTTT+GGG | - | chr2_1:55828652-55828671 | Msa0213190:five_prime_UTR | 30.0% |
| ! | ACAACTCAGATCCTTTTGAA+CGG | + | chr2_1:55823888-55823907 | None:intergenic | 35.0% |
| AAACAGAAAGAAGACGAAGA+AGG | + | chr2_1:55823926-55823945 | None:intergenic | 35.0% | |
| !!! | CTTTGTTTTTGCAACAATGG+CGG | - | chr2_1:55824058-55824077 | Msa0213190:intron | 35.0% |
| GCAAAAGGAAGAAGAATGAA+AGG | + | chr2_1:55824171-55824190 | None:intergenic | 35.0% | |
| ! | TTGAGGATTGTGTTGTTGAT+TGG | - | chr2_1:55824298-55824317 | Msa0213190:intron | 35.0% |
| !!! | GTTTTTTGTTTGTGTGTGTG+TGG | - | chr2_1:55824538-55824557 | Msa0213190:CDS | 35.0% |
| GCTGTTCTCATAAGTTATCT+TGG | - | chr2_1:55824795-55824814 | Msa0213190:intron | 35.0% | |
| !! | TTAAGTCTTGTTAGACTGTC+TGG | + | chr2_1:55824890-55824909 | None:intergenic | 35.0% |
| AGGACACAATAATACTTCCA+AGG | + | chr2_1:55825046-55825065 | None:intergenic | 35.0% | |
| !! | TACAATTTTGTTGTCTGCAG+TGG | - | chr2_1:55825180-55825199 | Msa0213190:intron | 35.0% |
| !! | ACAATTTTGTTGTCTGCAGT+GGG | - | chr2_1:55825181-55825200 | Msa0213190:intron | 35.0% |
| !!! | GTGACAGATTTTGGGATTAA+TGG | + | chr2_1:55825638-55825657 | None:intergenic | 35.0% |
| GTACCTTATAAGACATGTGT+GGG | + | chr2_1:55825660-55825679 | None:intergenic | 35.0% | |
| AGTACCTTATAAGACATGTG+TGG | + | chr2_1:55825661-55825680 | None:intergenic | 35.0% | |
| TCCTGTGAACTAGTTCAAAA+TGG | - | chr2_1:55825762-55825781 | Msa0213190:intron | 35.0% | |
| ! | TCCATTTTGAACTAGTTCAC+AGG | + | chr2_1:55825766-55825785 | None:intergenic | 35.0% |
| TACACCTTCAGTATTTGTGT+TGG | - | chr2_1:55825790-55825809 | Msa0213190:intron | 35.0% | |
| ATTGCCAACACAAATACTGA+AGG | + | chr2_1:55825797-55825816 | None:intergenic | 35.0% | |
| TGCAACAGAAATATACAGGT+AGG | + | chr2_1:55826300-55826319 | None:intergenic | 35.0% | |
| TCATAAACTGTACACAGTCA+GGG | + | chr2_1:55826505-55826524 | None:intergenic | 35.0% | |
| ATCATAAACTGTACACAGTC+AGG | + | chr2_1:55826506-55826525 | None:intergenic | 35.0% | |
| GTTGGAGTAGTTTACCAAAT+GGG | - | chr2_1:55826738-55826757 | Msa0213190:intron | 35.0% | |
| !! | AGCTCTAAGACTTATCTTCA+TGG | - | chr2_1:55826776-55826795 | Msa0213190:intron | 35.0% |
| GGGACTAACATAATACATGA+CGG | + | chr2_1:55826844-55826863 | None:intergenic | 35.0% | |
| ATGCTTTGTGTGTATATCGA+TGG | - | chr2_1:55826914-55826933 | Msa0213190:intron | 35.0% | |
| ! | CACTTTGTTTATTCCTTCCA+TGG | - | chr2_1:55826969-55826988 | Msa0213190:intron | 35.0% |
| ! | TCTCTAGAAATATCCATGGA+AGG | + | chr2_1:55826985-55827004 | None:intergenic | 35.0% |
| ! | GATCTCTCTAGAAATATCCA+TGG | + | chr2_1:55826989-55827008 | None:intergenic | 35.0% |
| ! | ATTTCTAGAGAGATCGAAGA+TGG | - | chr2_1:55826994-55827013 | Msa0213190:intron | 35.0% |
| TGAGGATAAGTATAACAGGT+GGG | + | chr2_1:55827042-55827061 | None:intergenic | 35.0% | |
| TTGAGGATAAGTATAACAGG+TGG | + | chr2_1:55827043-55827062 | None:intergenic | 35.0% | |
| ! | AGTTTAGAGCAAAAGTGCAA+AGG | + | chr2_1:55827069-55827088 | None:intergenic | 35.0% |
| ! | TCTCATTTGATAATCCCTTG+AGG | - | chr2_1:55827275-55827294 | Msa0213190:intron | 35.0% |
| ATGTATGTTAACAAGCACAC+AGG | + | chr2_1:55827399-55827418 | None:intergenic | 35.0% | |
| AAGGCATGTATTTGTTTGCT+AGG | + | chr2_1:55827425-55827444 | None:intergenic | 35.0% | |
| ! | AGATTTGCTCACAACAATGT+CGG | + | chr2_1:55827453-55827472 | None:intergenic | 35.0% |
| TCTTAGATCAAACAACAGTC+AGG | - | chr2_1:55827470-55827489 | Msa0213190:intron | 35.0% | |
| TACCCACACCCTTATATAAA+GGG | + | chr2_1:55827512-55827531 | None:intergenic | 35.0% | |
| TCGACATTTATTGGTCAAAG+TGG | - | chr2_1:55827578-55827597 | Msa0213190:intron | 35.0% | |
| TTATACATACGCACTGTCAT+TGG | - | chr2_1:55827665-55827684 | Msa0213190:intron | 35.0% | |
| TATACATACGCACTGTCATT+GGG | - | chr2_1:55827666-55827685 | Msa0213190:intron | 35.0% | |
| TCGGCATCTATAAAACACTT+CGG | + | chr2_1:55827743-55827762 | None:intergenic | 35.0% | |
| CGTAAAAAAGTTACTGTGTC+TGG | - | chr2_1:55827772-55827791 | Msa0213190:intron | 35.0% | |
| TACTCACTGATGTACTAGTT+TGG | - | chr2_1:55827801-55827820 | Msa0213190:intron | 35.0% | |
| ! | TGATGTACTAGTTTGGAGTT+TGG | - | chr2_1:55827808-55827827 | Msa0213190:intron | 35.0% |
| TTGTGGAGCTGATTAAATGT+TGG | - | chr2_1:55827839-55827858 | Msa0213190:intron | 35.0% | |
| TGCTGCTATCTACTTACTAA+AGG | + | chr2_1:55828175-55828194 | None:intergenic | 35.0% | |
| GCAAAAATGTGGGAAGAAAA+AGG | + | chr2_1:55828240-55828259 | None:intergenic | 35.0% | |
| AACTTTGTCCTTTCAAACAC+AGG | - | chr2_1:55828491-55828510 | Msa0213190:CDS | 35.0% | |
| GATGATCAAGATTATGAGTC+CGG | - | chr2_1:55828619-55828638 | Msa0213190:five_prime_UTR | 35.0% | |
| ATGATCAAGATTATGAGTCC+GGG | - | chr2_1:55828620-55828639 | Msa0213190:five_prime_UTR | 35.0% | |
| GTAGAGAAGAAGATAAGCGT+AGG | + | chr2_1:55824108-55824127 | None:intergenic | 40.0% | |
| CGGTCAAATCTTCTTCAACA+AGG | - | chr2_1:55824142-55824161 | Msa0213190:intron | 40.0% | |
| TTTGTTTGTGTGTGTGTGGA+TGG | - | chr2_1:55824542-55824561 | Msa0213190:CDS | 40.0% | |
| !! | AAACAACAAGCACTGACGTA+AGG | + | chr2_1:55824599-55824618 | None:intergenic | 40.0% |
| !! | TTACGTCAGTGCTTGTTGTT+TGG | - | chr2_1:55824598-55824617 | Msa0213190:intron | 40.0% |
| !! | CAGTGCTTGTTGTTTGGAAT+TGG | - | chr2_1:55824604-55824623 | Msa0213190:intron | 40.0% |
| AGAGTCAATGCCAAAGGATA+AGG | + | chr2_1:55825233-55825252 | None:intergenic | 40.0% | |
| TGAAGTAGAGTCAATGCCAA+AGG | + | chr2_1:55825239-55825258 | None:intergenic | 40.0% | |
| !!! | CTTGTAGGTTTTGAAGGTTG+AGG | - | chr2_1:55825381-55825400 | Msa0213190:intron | 40.0% |
| !!! | TAGGTTTTGAAGGTTGAGGA+GGG | - | chr2_1:55825385-55825404 | Msa0213190:intron | 40.0% |
| !! | TTGGTTTTCCTTACTTTCGC+TGG | - | chr2_1:55825487-55825506 | Msa0213190:CDS | 40.0% |
| ! | GATTAATGGGTCAAAGCTGA+AGG | + | chr2_1:55825624-55825643 | None:intergenic | 40.0% |
| ! | ATGTGTGGGTGACAGATTTT+GGG | + | chr2_1:55825646-55825665 | None:intergenic | 40.0% |
| TCACCCACACATGTCTTATA+AGG | - | chr2_1:55825654-55825673 | Msa0213190:intron | 40.0% | |
| !! | GTGTTGGCAATTTTCAGACT+AGG | - | chr2_1:55825806-55825825 | Msa0213190:intron | 40.0% |
| ! | CTTTGTTGATTAGGCCCATT+TGG | - | chr2_1:55825963-55825982 | Msa0213190:CDS | 40.0% |
| CTTCTTCAGTAGTGCCAATT+GGG | - | chr2_1:55826237-55826256 | Msa0213190:intron | 40.0% | |
| TTCTTCAGTAGTGCCAATTG+GGG | - | chr2_1:55826238-55826257 | Msa0213190:intron | 40.0% | |
| ! | CCAAAGTGTCATTGCAAACA+TGG | + | chr2_1:55826264-55826283 | None:intergenic | 40.0% |
| CCATGTTTGCAATGACACTT+TGG | - | chr2_1:55826261-55826280 | Msa0213190:intron | 40.0% | |
| TTTGCAATGACACTTTGGCT+TGG | - | chr2_1:55826266-55826285 | Msa0213190:intron | 40.0% | |
| TGCATTTGCACAAATGCTGA+AGG | - | chr2_1:55826316-55826335 | Msa0213190:CDS | 40.0% | |
| CTTGCAATTAGTTGCAGTTC+TGG | + | chr2_1:55826556-55826575 | None:intergenic | 40.0% | |
| ! | GGAGTTCTAGTAGCTTCTTA+TGG | - | chr2_1:55826696-55826715 | Msa0213190:intron | 40.0% |
| GGTTGGAGTAGTTTACCAAA+TGG | - | chr2_1:55826737-55826756 | Msa0213190:intron | 40.0% | |
| TGTATTATGTTAGTCCCTGC+AGG | - | chr2_1:55826847-55826866 | Msa0213190:intron | 40.0% | |
| ! | CAAAAGTGCAAAGGCAATTG+AGG | + | chr2_1:55827060-55827079 | None:intergenic | 40.0% |
| CACTTGTGTGTGAAATCACA+AGG | + | chr2_1:55827102-55827121 | None:intergenic | 40.0% | |
| TTGCTGGAGTTGTTAAGGAT+TGG | - | chr2_1:55827137-55827156 | Msa0213190:intron | 40.0% | |
| TGCTGGAGTTGTTAAGGATT+GGG | - | chr2_1:55827138-55827157 | Msa0213190:intron | 40.0% | |
| ATTAAACAATCCAGGGACGT+TGG | - | chr2_1:55827344-55827363 | Msa0213190:CDS | 40.0% | |
| ACGTTGGATAGTCCAGTATT+AGG | - | chr2_1:55827360-55827379 | Msa0213190:CDS | 40.0% | |
| CACAACAATGTCGGAAATGA+AGG | + | chr2_1:55827444-55827463 | None:intergenic | 40.0% | |
| TGTCCCTTTATATAAGGGTG+TGG | - | chr2_1:55827506-55827525 | Msa0213190:intron | 40.0% | |
| ! | GTCCCTTTATATAAGGGTGT+GGG | - | chr2_1:55827507-55827526 | Msa0213190:intron | 40.0% |
| GTACCCACACCCTTATATAA+AGG | + | chr2_1:55827513-55827532 | None:intergenic | 40.0% | |
| TGTGTCGGATTTAAGTCTTG+TGG | - | chr2_1:55827633-55827652 | Msa0213190:intron | 40.0% | |
| GGAGAGATTTATCCCTAAGT+GGG | - | chr2_1:55827687-55827706 | Msa0213190:intron | 40.0% | |
| !! | AACAAGCTCAGAAGCATTTG+AGG | + | chr2_1:55828125-55828144 | None:intergenic | 40.0% |
| !! | AGCTTGTTGAATCTACCCAA+AGG | - | chr2_1:55828137-55828156 | Msa0213190:intron | 40.0% |
| ATAGGGCATGAACAACTAGA+AGG | + | chr2_1:55828289-55828308 | None:intergenic | 40.0% | |
| ! | TTCTAGTTGTTCATGCCCTA+TGG | - | chr2_1:55828288-55828307 | Msa0213190:intron | 40.0% |
| TCTAGTTGTTCATGCCCTAT+GGG | - | chr2_1:55828289-55828308 | Msa0213190:intron | 40.0% | |
| CTGAATGCAGTACAAAAACC+TGG | + | chr2_1:55828684-55828703 | None:intergenic | 40.0% | |
| ! | ACTCAGATCCTTTTGAACGG+AGG | + | chr2_1:55823885-55823904 | None:intergenic | 45.0% |
| !! | ATGGCGGATCGTAAGAATGA+AGG | - | chr2_1:55824074-55824093 | Msa0213190:intron | 45.0% |
| GTTGAAGAAGATTTGACCGC+TGG | + | chr2_1:55824141-55824160 | None:intergenic | 45.0% | |
| TGGTGGAATGCTTGTGGTAA+TGG | - | chr2_1:55824562-55824581 | Msa0213190:intron | 45.0% | |
| !! | TGCTTGTGGTAATGGAACAC+TGG | - | chr2_1:55824570-55824589 | Msa0213190:intron | 45.0% |
| !! | GCTTGTGGTAATGGAACACT+GGG | - | chr2_1:55824571-55824590 | Msa0213190:intron | 45.0% |
| !! | GCTGTCTTTTGAGTGATCCT+TGG | - | chr2_1:55825026-55825045 | Msa0213190:intron | 45.0% |
| !! | GCAGTGGGTTTTGTCTTCTA+AGG | - | chr2_1:55825196-55825215 | Msa0213190:intron | 45.0% |
| !! | GGCATTGACTCTACTTCACA+TGG | - | chr2_1:55825241-55825260 | Msa0213190:intron | 45.0% |
| !!! | GTAGGTTTTGAAGGTTGAGG+AGG | - | chr2_1:55825384-55825403 | Msa0213190:intron | 45.0% |
| ! | CATGTGTGGGTGACAGATTT+TGG | + | chr2_1:55825647-55825666 | None:intergenic | 45.0% |
| !! | GATGCAGAAATTTCTGGAGC+TGG | + | chr2_1:55825944-55825963 | None:intergenic | 45.0% |
| !! | TTTGTGAATATGGGTTGGGC+TGG | - | chr2_1:55826029-55826048 | Msa0213190:intron | 45.0% |
| !! | TTGGGCTGGTTAAATGCTTG+TGG | - | chr2_1:55826043-55826062 | Msa0213190:intron | 45.0% |
| TACACATAGACAATCGCACG+CGG | + | chr2_1:55826084-55826103 | None:intergenic | 45.0% | |
| GCTTCTTCAGTAGTGCCAAT+TGG | - | chr2_1:55826236-55826255 | Msa0213190:intron | 45.0% | |
| ATTGCAAACATGGCCCCAAT+TGG | + | chr2_1:55826254-55826273 | None:intergenic | 45.0% | |
| !! | GCAGTTCTGGAGGATAAGTA+TGG | + | chr2_1:55826543-55826562 | None:intergenic | 45.0% |
| ! | GCAATTAGTTGCAGTTCTGG+AGG | + | chr2_1:55826553-55826572 | None:intergenic | 45.0% |
| CCAAGCACAAAAACAGCTAC+AGG | + | chr2_1:55826612-55826631 | None:intergenic | 45.0% | |
| !!! | CCTGTAGCTGTTTTTGTGCT+TGG | - | chr2_1:55826609-55826628 | Msa0213190:intron | 45.0% |
| GGAGTAGTTTACCAAATGGG+AGG | - | chr2_1:55826741-55826760 | Msa0213190:intron | 45.0% | |
| !! | TACCAAATGGGAGGTGTTGT+CGG | - | chr2_1:55826750-55826769 | Msa0213190:intron | 45.0% |
| !! | TAAAAGAGCACTTGCCTGCA+GGG | + | chr2_1:55826864-55826883 | None:intergenic | 45.0% |
| !! | TTAAAAGAGCACTTGCCTGC+AGG | + | chr2_1:55826865-55826884 | None:intergenic | 45.0% |
| TCTAGAGAGATCGAAGATGG+AGG | - | chr2_1:55826997-55827016 | Msa0213190:intron | 45.0% | |
| GCTTTAACCATTCGTGTTGC+TGG | - | chr2_1:55827121-55827140 | Msa0213190:intron | 45.0% | |
| AACAACTCCAGCAACACGAA+TGG | + | chr2_1:55827131-55827150 | None:intergenic | 45.0% | |
| ! | TCGTGTTGCTGGAGTTGTTA+AGG | - | chr2_1:55827132-55827151 | Msa0213190:intron | 45.0% |
| TGGAGTTGTTAAGGATTGGG+TGG | - | chr2_1:55827141-55827160 | Msa0213190:intron | 45.0% | |
| TTCCAGGGAACACCTAATAC+TGG | + | chr2_1:55827375-55827394 | None:intergenic | 45.0% | |
| TACTGAGTGGAGAGTGATGT+GGG | - | chr2_1:55827530-55827549 | Msa0213190:intron | 45.0% | |
| GGGAGAGATTTATCCCTAAG+TGG | - | chr2_1:55827686-55827705 | Msa0213190:intron | 45.0% | |
| ATGAGCAGTTTCAGTAGCGA+TGG | - | chr2_1:55828011-55828030 | Msa0213190:intron | 45.0% | |
| ATATGCTGCTACACCTGCAA+TGG | + | chr2_1:55828065-55828084 | None:intergenic | 45.0% | |
| !! | TCAGAAGCATTTGAGGAGTC+AGG | + | chr2_1:55828118-55828137 | None:intergenic | 45.0% |
| TGTTGAATCTACCCAAAGGC+AGG | - | chr2_1:55828141-55828160 | Msa0213190:intron | 45.0% | |
| GCTTAGCACCTGTGTTTGAA+AGG | + | chr2_1:55828502-55828521 | None:intergenic | 45.0% | |
| CTCTACATTGCTCTCTCCAG+CGG | - | chr2_1:55824122-55824141 | Msa0213190:intron | 50.0% | |
| GTTTGTGTGTGTGTGGATGG+TGG | - | chr2_1:55824545-55824564 | Msa0213190:CDS | 50.0% | |
| !! | TGTGGATGGTGGAATGCTTG+TGG | - | chr2_1:55824556-55824575 | Msa0213190:CDS | 50.0% |
| ! | TCCTTACTTTCGCTGGCTGT+TGG | - | chr2_1:55825494-55825513 | Msa0213190:CDS | 50.0% |
| ACCAACAGCCAGCGAAAGTA+AGG | + | chr2_1:55825498-55825517 | None:intergenic | 50.0% | |
| AGATCGAAGATGGAGGACCA+CGG | - | chr2_1:55827004-55827023 | Msa0213190:intron | 50.0% | |
| GTCCAGTATTAGGTGTTCCC+TGG | - | chr2_1:55827370-55827389 | Msa0213190:CDS | 50.0% | |
| AACAAGCACACAGGCTTCCA+GGG | + | chr2_1:55827390-55827409 | None:intergenic | 50.0% | |
| TAACAAGCACACAGGCTTCC+AGG | + | chr2_1:55827391-55827410 | None:intergenic | 50.0% | |
| !! | ATAAGGGTGTGGGTACTGAG+TGG | - | chr2_1:55827517-55827536 | Msa0213190:intron | 50.0% |
| GTACTGAGTGGAGAGTGATG+TGG | - | chr2_1:55827529-55827548 | Msa0213190:intron | 50.0% | |
| ! | CAACTAGTCTGAGTTGCGCT+GGG | + | chr2_1:55827716-55827735 | None:intergenic | 50.0% |
| ! | CAGCGCAACTCAGACTAGTT+GGG | - | chr2_1:55827715-55827734 | Msa0213190:intron | 50.0% |
| GGAGTTTGGAGACAAGCTTG+TGG | - | chr2_1:55827822-55827841 | Msa0213190:intron | 50.0% | |
| AGGCTGAGATTCCTGCCTTT+GGG | + | chr2_1:55828155-55828174 | None:intergenic | 50.0% | |
| AAGGCTGAGATTCCTGCCTT+TGG | + | chr2_1:55828156-55828175 | None:intergenic | 50.0% | |
| CAAACACAGGTGCTAAGCCA+TGG | - | chr2_1:55828504-55828523 | Msa0213190:CDS | 50.0% | |
| TTATGATTGGGCCTTTGGGC+TGG | - | chr2_1:55828656-55828675 | Msa0213190:five_prime_UTR | 50.0% | |
| TTTGTGCTTGGAGTAGCCGC+AGG | - | chr2_1:55826621-55826640 | Msa0213190:intron | 55.0% | |
| CACCGACAACACCTCCCATT+TGG | + | chr2_1:55826755-55826774 | None:intergenic | 55.0% | |
| AGATGGAGGACCACGGAACA+TGG | - | chr2_1:55827011-55827030 | Msa0213190:intron | 55.0% | |
| GTGGGAAGTTCCATGTTCCG+TGG | + | chr2_1:55827024-55827043 | None:intergenic | 55.0% | |
| ACTGGACTATCCAACGTCCC+TGG | + | chr2_1:55827357-55827376 | None:intergenic | 55.0% | |
| TGGAGAGTGATGTGGGCATG+TGG | - | chr2_1:55827537-55827556 | Msa0213190:intron | 55.0% | |
| TGCGCTGGGTAACCCACTTA+GGG | + | chr2_1:55827702-55827721 | None:intergenic | 55.0% | |
| TTGCGCTGGGTAACCCACTT+AGG | + | chr2_1:55827703-55827722 | None:intergenic | 55.0% | |
| ! | CCAACTAGTCTGAGTTGCGC+TGG | + | chr2_1:55827717-55827736 | None:intergenic | 55.0% |
| CCAGCGCAACTCAGACTAGT+TGG | - | chr2_1:55827714-55827733 | Msa0213190:intron | 55.0% | |
| AAAACCTGGCACCAGCCCAA+AGG | + | chr2_1:55828670-55828689 | None:intergenic | 55.0% | |
| GCTCATCACCTCGAGTCCTG+CGG | + | chr2_1:55826640-55826659 | None:intergenic | 60.0% | |
| TGGAGTAGCCGCAGGACTCG+AGG | - | chr2_1:55826629-55826648 | Msa0213190:intron | 65.0% | |
| !! | TGGGCCTTTGGGCTGGTGCC+AGG | - | chr2_1:55828663-55828682 | Msa0213190:five_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 55823875 | 55828764 | 55823875 | ID=Msa0213190;Name=Msa0213190 |
| chr2_1 | mRNA | 55823875 | 55828764 | 55823875 | ID=Msa0213190-mRNA-1;Parent=Msa0213190;Name=Msa0213190-mRNA-1;_AED=0.27;_eAED=0.27;_QI=199|0.62|0.55|1|0.62|0.55|9|0|276 |
| chr2_1 | exon | 55823875 | 55823878 | 55823875 | ID=Msa0213190-mRNA-1:exon:15522;Parent=Msa0213190-mRNA-1 |
| chr2_1 | exon | 55824197 | 55824204 | 55824197 | ID=Msa0213190-mRNA-1:exon:15521;Parent=Msa0213190-mRNA-1 |
| chr2_1 | exon | 55824462 | 55824577 | 55824462 | ID=Msa0213190-mRNA-1:exon:15520;Parent=Msa0213190-mRNA-1 |
| chr2_1 | exon | 55825404 | 55825544 | 55825404 | ID=Msa0213190-mRNA-1:exon:15519;Parent=Msa0213190-mRNA-1 |
| chr2_1 | exon | 55825820 | 55826032 | 55825820 | ID=Msa0213190-mRNA-1:exon:15518;Parent=Msa0213190-mRNA-1 |
| chr2_1 | exon | 55826295 | 55826407 | 55826295 | ID=Msa0213190-mRNA-1:exon:15517;Parent=Msa0213190-mRNA-1 |
| chr2_1 | exon | 55827217 | 55827251 | 55827217 | ID=Msa0213190-mRNA-1:exon:15516;Parent=Msa0213190-mRNA-1 |
| chr2_1 | exon | 55827332 | 55827439 | 55827332 | ID=Msa0213190-mRNA-1:exon:15515;Parent=Msa0213190-mRNA-1 |
| chr2_1 | exon | 55828476 | 55828764 | 55828476 | ID=Msa0213190-mRNA-1:exon:15514;Parent=Msa0213190-mRNA-1 |
| chr2_1 | five_prime_UTR | 55828566 | 55828764 | 55828566 | ID=Msa0213190-mRNA-1:five_prime_utr;Parent=Msa0213190-mRNA-1 |
| chr2_1 | CDS | 55828476 | 55828565 | 55828476 | ID=Msa0213190-mRNA-1:cds;Parent=Msa0213190-mRNA-1 |
| chr2_1 | CDS | 55827332 | 55827439 | 55827332 | ID=Msa0213190-mRNA-1:cds;Parent=Msa0213190-mRNA-1 |
| chr2_1 | CDS | 55827217 | 55827251 | 55827217 | ID=Msa0213190-mRNA-1:cds;Parent=Msa0213190-mRNA-1 |
| chr2_1 | CDS | 55826295 | 55826407 | 55826295 | ID=Msa0213190-mRNA-1:cds;Parent=Msa0213190-mRNA-1 |
| chr2_1 | CDS | 55825820 | 55826032 | 55825820 | ID=Msa0213190-mRNA-1:cds;Parent=Msa0213190-mRNA-1 |
| chr2_1 | CDS | 55825404 | 55825544 | 55825404 | ID=Msa0213190-mRNA-1:cds;Parent=Msa0213190-mRNA-1 |
| chr2_1 | CDS | 55824462 | 55824577 | 55824462 | ID=Msa0213190-mRNA-1:cds;Parent=Msa0213190-mRNA-1 |
| chr2_1 | CDS | 55824197 | 55824204 | 55824197 | ID=Msa0213190-mRNA-1:cds;Parent=Msa0213190-mRNA-1 |
| chr2_1 | CDS | 55823875 | 55823878 | 55823875 | ID=Msa0213190-mRNA-1:cds;Parent=Msa0213190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
