AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0692880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692880 MtrunA17_Chr4g0043121 98.592 426 6 0 1 426 1 426 0.0 870
Msa0692880 MtrunA17_Chr3g0115931 53.301 621 253 10 26 638 99 690 0.0 672
Msa0692880 MtrunA17_Chr5g0426281 51.254 638 264 10 12 638 71 672 0.0 667
Msa0692880 MtrunA17_Chr4g0043131 98.378 185 3 0 454 638 1 185 5.80e-132 385
Msa0692880 MtrunA17_Chr1g0183721 32.033 615 353 13 45 633 7 582 3.85e-104 328
Msa0692880 MtrunA17_Chr1g0187601 34.973 549 310 12 84 625 89 597 9.67e-104 328
Msa0692880 MtrunA17_Chr1g0167381 34.451 537 308 9 84 614 90 588 4.96e-103 326
Msa0692880 MtrunA17_Chr8g0388881 32.292 576 334 16 73 635 87 619 5.70e-100 318
Msa0692880 MtrunA17_Chr3g0112341 34.622 569 307 16 84 637 151 669 2.91e-98 315
Msa0692880 MtrunA17_Chr1g0171781 33.228 632 352 20 22 635 23 602 1.54e-97 311
Msa0692880 MtrunA17_Chr7g0246681 31.937 573 332 10 75 637 64 588 1.34e-95 305
Msa0692880 MtrunA17_Chr4g0055031 31.329 632 369 16 24 635 16 602 5.89e-95 304
Msa0692880 MtrunA17_Chr8g0369481 32.613 555 322 14 89 633 73 585 2.61e-93 300
Msa0692880 MtrunA17_Chr8g0361791 31.424 576 337 12 72 635 70 599 9.97e-93 298
Msa0692880 MtrunA17_Chr5g0416991 31.010 574 341 14 72 635 70 598 1.46e-91 295
Msa0692880 MtrunA17_Chr1g0203741 33.333 552 315 15 89 627 95 606 4.32e-91 295
Msa0692880 MtrunA17_Chr8g0350391 32.451 567 326 15 85 635 104 629 5.02e-91 295
Msa0692880 MtrunA17_Chr5g0435751 32.686 566 302 14 81 634 120 618 1.10e-90 293
Msa0692880 MtrunA17_Chr1g0159741 32.188 553 318 15 95 635 151 658 2.92e-90 293
Msa0692880 MtrunA17_Chr8g0350351 30.998 571 340 10 73 635 75 599 4.97e-90 291
Msa0692880 MtrunA17_Chr6g0472571 31.818 550 322 13 89 627 108 615 1.59e-89 291
Msa0692880 MtrunA17_Chr7g0246701 32.504 563 324 15 88 635 103 624 2.46e-89 290
Msa0692880 MtrunA17_Chr3g0092501 32.182 550 313 15 84 623 83 582 4.42e-89 289
Msa0692880 MtrunA17_Chr7g0214551 31.570 567 328 14 82 630 39 563 1.55e-87 284
Msa0692880 MtrunA17_Chr5g0409411 31.282 585 328 12 71 633 55 587 6.83e-86 280
Msa0692880 MtrunA17_Chr3g0125511 31.786 560 314 18 96 637 234 743 1.26e-78 265
Msa0692880 MtrunA17_Chr3g0130381 33.036 560 295 21 95 631 268 770 8.56e-77 260
Msa0692880 MtrunA17_Chr5g0437501 29.180 610 328 20 54 617 41 592 1.27e-75 253
Msa0692880 MtrunA17_Chr8g0384431 31.181 542 300 18 95 615 298 787 9.87e-75 255
Msa0692880 MtrunA17_Chr3g0113981 30.534 524 288 18 128 637 208 669 1.59e-74 252
Msa0692880 MtrunA17_Chr1g0155141 30.700 557 315 20 91 637 205 700 1.03e-71 245
Msa0692880 MtrunA17_Chr8g0372471 30.978 552 316 17 95 633 387 886 1.36e-71 248
Msa0692880 MtrunA17_Chr5g0404761 31.457 302 152 8 338 623 1 263 2.62e-39 145
Msa0692880 MtrunA17_Chr5g0404771 32.301 226 136 5 95 315 329 542 4.27e-32 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692880 AT2G03480.1 65.625 640 184 5 1 638 1 606 0.0 868
Msa0692880 AT1G13860.4 65.561 633 185 5 8 638 2 603 0.0 868
Msa0692880 AT1G13860.3 65.561 633 185 5 8 638 2 603 0.0 868
Msa0692880 AT1G13860.1 65.561 633 185 5 8 638 2 603 0.0 868
Msa0692880 AT1G13860.5 65.561 633 185 5 8 638 2 603 0.0 868
Msa0692880 AT2G03480.2 64.375 640 181 5 1 638 1 595 0.0 852
Msa0692880 AT1G13860.2 69.807 467 120 3 173 638 1 447 0.0 699
Msa0692880 AT1G78240.1 53.885 592 240 9 55 638 115 681 0.0 659
Msa0692880 AT1G78240.2 53.885 592 240 9 55 638 115 681 0.0 659
Msa0692880 AT2G03480.3 64.733 431 148 4 1 429 1 429 0.0 577
Msa0692880 AT3G23300.2 33.752 637 367 15 14 636 7 602 3.38e-107 337
Msa0692880 AT3G23300.1 33.752 637 367 15 14 636 7 602 3.38e-107 337
Msa0692880 AT5G14430.1 33.279 619 337 14 17 614 13 576 6.92e-103 325
Msa0692880 AT5G14430.2 32.956 619 339 14 17 614 13 576 1.02e-101 322
Msa0692880 AT2G39750.1 33.450 571 325 14 77 637 168 693 1.69e-101 324
Msa0692880 AT4G14360.1 33.948 542 312 11 80 614 70 572 2.38e-101 321
Msa0692880 AT4G14360.2 33.948 542 312 11 80 614 70 572 2.38e-101 321
Msa0692880 AT5G06050.1 34.146 574 322 16 72 635 136 663 8.23e-101 322
Msa0692880 AT5G04060.1 33.392 572 319 14 77 635 74 596 1.35e-100 319
Msa0692880 AT1G77260.1 32.474 582 336 14 62 633 119 653 1.89e-99 318
Msa0692880 AT3G10200.1 33.509 570 315 15 81 635 67 587 4.19e-98 312
Msa0692880 AT4G19120.1 33.391 581 317 15 69 633 61 587 2.34e-97 311
Msa0692880 AT4G19120.2 33.391 581 317 15 69 633 61 587 2.34e-97 311
Msa0692880 AT1G04430.1 32.969 549 324 9 84 626 82 592 3.27e-97 311
Msa0692880 AT1G04430.3 32.969 549 324 9 84 626 82 592 3.27e-97 311
Msa0692880 AT1G04430.2 32.969 549 324 9 84 626 82 592 3.27e-97 311
Msa0692880 AT1G31850.1 32.456 570 321 14 81 633 71 593 2.47e-96 308
Msa0692880 AT1G31850.2 32.456 570 321 14 81 633 71 593 2.47e-96 308
Msa0692880 AT1G31850.4 32.456 570 321 14 81 633 71 593 2.47e-96 308
Msa0692880 AT1G31850.3 32.456 570 321 14 81 633 71 593 2.47e-96 308
Msa0692880 AT4G10440.1 30.332 633 384 15 22 635 21 615 1.77e-93 301
Msa0692880 AT2G43200.2 34.420 552 296 18 88 622 93 595 5.34e-93 300
Msa0692880 AT2G43200.1 34.420 552 296 18 88 622 93 595 5.34e-93 300
Msa0692880 AT1G33170.1 32.021 559 330 14 89 635 113 633 1.58e-90 294
Msa0692880 AT4G00740.1 30.442 634 370 13 20 637 16 594 2.50e-90 292
Msa0692880 AT4G00740.2 30.442 634 370 13 20 637 16 594 2.50e-90 292
Msa0692880 AT3G10200.2 33.210 539 299 15 61 589 51 538 1.57e-89 290
Msa0692880 AT1G26850.2 31.937 573 334 13 77 635 77 607 2.48e-89 290
Msa0692880 AT1G26850.1 31.937 573 334 13 77 635 77 607 2.48e-89 290
Msa0692880 AT4G00750.1 31.746 567 324 14 89 638 99 619 5.46e-88 287
Msa0692880 AT2G45750.1 32.374 556 318 14 89 627 90 604 1.74e-87 286
Msa0692880 AT4G18030.1 28.617 629 388 13 23 635 19 602 1.44e-84 278
Msa0692880 AT3G56080.1 30.680 603 350 17 28 617 48 595 9.60e-82 270
Msa0692880 AT2G34300.2 31.784 538 303 15 114 637 271 758 4.60e-80 269
Msa0692880 AT2G34300.3 31.784 538 303 15 114 637 271 758 4.60e-80 269
Msa0692880 AT2G34300.1 31.784 538 303 15 114 637 271 758 4.60e-80 269
Msa0692880 AT2G40280.1 29.582 622 362 20 33 637 20 582 3.10e-79 263
Msa0692880 AT1G29470.1 32.079 558 315 19 95 637 250 758 7.47e-79 266
Msa0692880 AT1G29470.2 32.079 558 315 19 95 637 250 758 7.47e-79 266
Msa0692880 AT1G19430.1 31.551 561 310 21 88 636 223 721 4.94e-75 254
Msa0692880 AT1G19430.3 31.551 561 310 21 88 636 223 721 4.94e-75 254
Msa0692880 AT5G64030.1 31.903 536 310 17 95 618 308 800 6.80e-75 256
Msa0692880 AT3G51070.1 30.319 564 318 17 95 637 381 890 4.34e-73 253
Msa0692880 AT3G56080.2 30.645 558 319 17 28 572 48 550 5.06e-70 237
Msa0692880 AT4G19120.3 31.301 492 270 13 69 545 61 499 1.20e-69 234
Msa0692880 AT3G51070.2 31.111 495 269 15 95 568 381 824 9.89e-64 226
Msa0692880 AT1G26850.3 29.284 461 274 10 77 526 77 496 6.96e-54 192
Msa0692880 AT1G19430.2 28.271 428 240 17 88 504 223 594 3.24e-36 144

Find 217 sgRNAs with CRISPR-Local

Find 432 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAAGCGTGATTAGTATTT+TGG 0.127843 4_4:+61586912 Msa0692880:CDS
TCGAAGGAATTGGGAGAATT+AGG 0.154357 4_4:-61586570 None:intergenic
AATATTAACCAGTTCAATTT+TGG 0.173409 4_4:-61586892 None:intergenic
TTTATGAAGACATGCATTTC+TGG 0.194109 4_4:+61590039 Msa0692880:CDS
CAGTGGCGAATTCACGATTT+TGG 0.204937 4_4:+61586819 Msa0692880:five_prime_UTR
CAGGGAACGGATTGTTTAAT+TGG 0.219789 4_4:+61591950 Msa0692880:intron
GCGTGTAGCTGTTGATTATT+TGG 0.241569 4_4:+61587035 Msa0692880:CDS
TCTTCATCTCCAGGTCTCTT+TGG 0.249505 4_4:-61590119 None:intergenic
TTGGCTTTCATTACATTGTT+TGG 0.251762 4_4:+61586931 Msa0692880:CDS
AATTGGGAGAATTAGGGTTT+TGG 0.262755 4_4:-61586563 None:intergenic
GGGTTTGAATGCTGCATTGC+TGG 0.274702 4_4:+61590199 Msa0692880:CDS
CGAAGGAATTGGGAGAATTA+GGG 0.285769 4_4:-61586569 None:intergenic
GCCCTATCATCTCCGCAATT+TGG 0.286356 4_4:-61587685 None:intergenic
ATGGACATGAGTTCTAATTA+TGG 0.292273 4_4:+61590176 Msa0692880:CDS
TGCCTCTAAGTGCTTTAATT+AGG 0.294196 4_4:+61592278 Msa0692880:three_prime_UTR
CAGCATGATAGACTTATTCT+TGG 0.317399 4_4:+61591063 Msa0692880:CDS
GGTTTGAAGCAGAAGGAGTT+AGG 0.318276 4_4:+61587081 Msa0692880:CDS
TGTGAATGGCCACGAAATTC+AGG 0.321344 4_4:+61592224 Msa0692880:three_prime_UTR
TTTGTTGTCACTTAAAATAA+TGG 0.323120 4_4:+61587994 Msa0692880:CDS
AATTGTGGGTTTGGTAGCTT+TGG 0.324928 4_4:+61587965 Msa0692880:CDS
GATCAGCTGTAGATAATTAT+TGG 0.329962 4_4:+61590063 Msa0692880:CDS
ACATTCCGGATCATGTTATA+TGG 0.330347 4_4:-61590152 None:intergenic
AGACGAAAGAAATTGATCTT+TGG 0.330539 4_4:-61587316 None:intergenic
GTAACTGCTAATTTGTTGTC+TGG 0.335767 4_4:+61587147 Msa0692880:CDS
AAAGATCAATTTCTTTCGTC+TGG 0.336418 4_4:+61587318 Msa0692880:CDS
ACTTCAATCTTTACCACAAT+AGG 0.339398 4_4:+61592002 Msa0692880:three_prime_UTR
TGCTGGGTATGCTCTTCCAT+TGG 0.347288 4_4:-61589465 None:intergenic
AAGGATAATCTTCATCTTGC+TGG 0.349161 4_4:+61592307 Msa0692880:three_prime_UTR
GTGCTCAATGTGGCATCATT+TGG 0.350445 4_4:+61588152 Msa0692880:CDS
TGCTTTAATTAGGTTGGTTA+AGG 0.353806 4_4:+61592288 Msa0692880:three_prime_UTR
CAGAGAGAGAGATATATATA+AGG 0.356208 4_4:+61586407 Msa0692880:five_prime_UTR
CCGGTTGGGTCCAAACTGTT+TGG 0.361560 4_4:-61586481 None:intergenic
TCATATGATAATGATGGATA+TGG 0.362326 4_4:-61588118 None:intergenic
AACCTAATTAAAGCACTTAG+AGG 0.367410 4_4:-61592280 None:intergenic
CGCCAAATTGCGGAGATGAT+AGG 0.378623 4_4:+61587683 Msa0692880:CDS
CAGGATGGTTTGATCTTTGA+CGG 0.384835 4_4:+61587644 Msa0692880:CDS
TGGACATGAGTTCTAATTAT+GGG 0.384989 4_4:+61590177 Msa0692880:CDS
ACGAATCGGATCGAAGGAAT+TGG 0.385584 4_4:-61586580 None:intergenic
CAACAACAATCCAAACAGTT+TGG 0.386384 4_4:+61586471 Msa0692880:five_prime_UTR
GCTGGGTATGCTCTTCCATT+GGG 0.388868 4_4:-61589464 None:intergenic
ACAGCTGAGCTTGAAATTCA+TGG 0.390406 4_4:+61589889 Msa0692880:CDS
GGAGCGTCCAACAGAGTTGC+TGG 0.390872 4_4:-61589482 None:intergenic
ATCTCGAACGCTAAGATTCA+TGG 0.394359 4_4:+61586700 Msa0692880:five_prime_UTR
CTGGACATTAATTGTGGGTT+TGG 0.405139 4_4:+61587956 Msa0692880:CDS
CAGAAGGAGTTAGGGCTTTG+TGG 0.406998 4_4:+61587090 Msa0692880:CDS
TAACATGATCCGGAATGTTA+TGG 0.408722 4_4:+61590157 Msa0692880:CDS
CAACTGAATCGCAATGAATT+CGG 0.411500 4_4:-61586673 None:intergenic
TTTATTTCTTTGTTGTTCAT+CGG 0.412127 4_4:+61592156 Msa0692880:three_prime_UTR
TGGCATCATTTGGGATGAAA+AGG 0.417107 4_4:+61588162 Msa0692880:CDS
AGATAAAAGTCTCATCTTGC+TGG 0.417299 4_4:-61589509 None:intergenic
TCATGAATGTTGTTCCTGCC+AGG 0.420013 4_4:+61590243 Msa0692880:CDS
CTCAAGTACGTTGGGAAGCC+AGG 0.421484 4_4:+61591430 Msa0692880:CDS
CTGGCAGAAGACTGCTGACC+TGG 0.421513 4_4:+61589530 Msa0692880:CDS
AACTCATGTCCATAACATTC+CGG 0.426140 4_4:-61590166 None:intergenic
GTGAAGAAGAGCGCTAATTC+CGG 0.426628 4_4:-61586500 None:intergenic
CATCTCCAGGTCTCTTTGGA+TGG 0.427344 4_4:-61590115 None:intergenic
TGTTCATCTGTCATGGTGAT+TGG 0.432532 4_4:-61591542 None:intergenic
AAATTCCGTTACGTTGGCCT+AGG 0.440632 4_4:+61587256 Msa0692880:CDS
GGCAGTGGATCTTCATCTCC+AGG 0.442838 4_4:-61590128 None:intergenic
TATGATCTGCTTCATGCAAA+TGG 0.446445 4_4:+61591010 Msa0692880:CDS
TAGGGCTTTGTGGAAAAGAA+AGG 0.449648 4_4:+61587100 Msa0692880:CDS
TTGCTGGTGTTATGCATGAC+TGG 0.450400 4_4:+61590303 Msa0692880:CDS
GCCCTAAACCAAAATTGAAC+TGG 0.452625 4_4:+61586884 Msa0692880:CDS
AGAGGCCTTCCTGCTATGAT+TGG 0.454300 4_4:+61588073 Msa0692880:CDS
ACGAAATTCAGGAATGAACT+TGG 0.454309 4_4:+61592235 Msa0692880:three_prime_UTR
TGATTCTTCGCCTAGGAGAC+AGG 0.459410 4_4:+61586975 Msa0692880:CDS
TCTAAGTGCTTTAATTAGGT+TGG 0.459833 4_4:+61592282 Msa0692880:three_prime_UTR
TGCTCAATGTGGCATCATTT+GGG 0.461662 4_4:+61588153 Msa0692880:CDS
TGGTCATGAGAAGCTCTTTG+TGG 0.464411 4_4:+61586839 Msa0692880:exon
ATGTCTTCATAAAACTCTTC+AGG 0.464893 4_4:-61590029 None:intergenic
AAGTTCATTCCTGAATTTCG+TGG 0.465781 4_4:-61592233 None:intergenic
GCTATTCAACTATGTAAAGA+TGG 0.468832 4_4:+61589760 Msa0692880:CDS
ATCACCTACGAGCAAGCTAC+AGG 0.468915 4_4:+61589407 Msa0692880:CDS
TTGAGCAATGTCGATCGATT+GGG 0.469249 4_4:-61586643 None:intergenic
TGCCTCCATATAACATGATC+CGG 0.474515 4_4:+61590147 Msa0692880:CDS
CGAATCGGATCGAAGGAATT+GGG 0.475512 4_4:-61586579 None:intergenic
ATTTGAACAAGGGGAGGAGC+TGG 0.476097 4_4:+61587170 Msa0692880:CDS
AAGTCTCATCTTGCTGGGCT+AGG 0.477504 4_4:-61589503 None:intergenic
GCCAAATTGCGGAGATGATA+GGG 0.478531 4_4:+61587684 Msa0692880:CDS
GCTGGATTGCAATACAAAAC+AGG 0.478590 4_4:+61589845 Msa0692880:CDS
GTTACGTTGGCCTAGGGGTA+GGG 0.480364 4_4:+61587263 Msa0692880:CDS
GTGTTTGGTTCGTCCTCCTA+AGG 0.480788 4_4:+61587227 Msa0692880:CDS
GGATGGTCAGAGAAAATTAG+TGG 0.482184 4_4:-61590098 None:intergenic
CTATTCAACTATGTAAAGAT+GGG 0.483883 4_4:+61589761 Msa0692880:CDS
CTGAAATCTGTTTCCAGCGG+TGG 0.483902 4_4:+61587060 Msa0692880:CDS
AAGGGAAGGAGATCGGTGTT+TGG 0.483912 4_4:+61587212 Msa0692880:CDS
AGGGCTTTGTGGAAAAGAAA+GGG 0.485039 4_4:+61587101 Msa0692880:CDS
CTAGGGGTAGGGATATTATA+TGG 0.485149 4_4:+61587274 Msa0692880:CDS
CGAAATTTCAGAGAAGGAAG+AGG 0.485405 4_4:-61589946 None:intergenic
ACTTATTCTTGGAGATGGAC+AGG 0.485529 4_4:+61591074 Msa0692880:CDS
CTTCCTCTCATACTCGATAG+AGG 0.487965 4_4:+61590278 Msa0692880:CDS
GTTTGAAGCAGAAGGAGTTA+GGG 0.490196 4_4:+61587082 Msa0692880:CDS
ATAAGCGAAGCCTGTCTCCT+AGG 0.490669 4_4:-61586985 None:intergenic
ATTGAGCAATGTCGATCGAT+TGG 0.491329 4_4:-61586644 None:intergenic
CCACTTGTACCATGTATAAG+TGG 0.492254 4_4:+61589808 Msa0692880:CDS
CGTTACGTTGGCCTAGGGGT+AGG 0.493314 4_4:+61587262 Msa0692880:CDS
AATGAAAACAAGAAACGAAT+CGG 0.494436 4_4:-61586594 None:intergenic
CTATGCTGGACATTAATTGT+GGG 0.497181 4_4:+61587951 Msa0692880:CDS
TCAATATCTTGAACCTATTG+TGG 0.500311 4_4:-61592015 None:intergenic
CCAAACAGTTTGGACCCAAC+CGG 0.500408 4_4:+61586481 Msa0692880:five_prime_UTR
ATCATATGTCCGTGGGTAGG+TGG 0.501666 4_4:-61590993 None:intergenic
CGTCTGGAAGTATGACCAAA+AGG 0.505305 4_4:+61587334 Msa0692880:CDS
GGTTTGTGTAGCGGCATATG+AGG 0.505589 4_4:+61588018 Msa0692880:CDS
ATGGTACTACGATAGGTTCA+TGG 0.506764 4_4:+61586719 Msa0692880:five_prime_UTR
CATGAATGTTGTTCCTGCCA+GGG 0.508876 4_4:+61590244 Msa0692880:CDS
ACTTGCAACTCAAGTACGTT+GGG 0.511754 4_4:+61591422 Msa0692880:CDS
CAGCGGTGGTTTGAAGCAGA+AGG 0.512739 4_4:+61587074 Msa0692880:CDS
CTCAATCGTTCCCACTGTAT+CGG 0.516495 4_4:-61591388 None:intergenic
GATAGACTTATTCTTGGAGA+TGG 0.517219 4_4:+61591069 Msa0692880:CDS
GATCTCCTTCCCTTGACACT+TGG 0.518861 4_4:-61587203 None:intergenic
CAAACCATCCTGTGAGTGAA+AGG 0.520104 4_4:-61587633 None:intergenic
TCAAATTGCCTTTCACTCAC+AGG 0.521415 4_4:+61587625 Msa0692880:CDS
AATTCCGTTACGTTGGCCTA+GGG 0.522095 4_4:+61587257 Msa0692880:CDS
GTTGACCGTGTTCTTAAACC+TGG 0.522848 4_4:+61589366 Msa0692880:CDS
ATAACAGGTTCGAACTATGC+TGG 0.522963 4_4:+61587937 Msa0692880:intron
GCTCTTTGTGGAACAAATTG+TGG 0.523628 4_4:+61586851 Msa0692880:CDS
TCATATGTCCGTGGGTAGGT+GGG 0.527301 4_4:-61590992 None:intergenic
AGCATACCCAGCAACTCTGT+TGG 0.527719 4_4:+61589475 Msa0692880:CDS
AATATAAAATTCCGTTACGT+TGG 0.527837 4_4:+61587250 Msa0692880:CDS
GTCCGTGGGTAGGTGGGGAA+AGG 0.530884 4_4:-61590986 None:intergenic
ATGAAGTTGCCAATCATAGC+AGG 0.530957 4_4:-61588082 None:intergenic
ATTCTGAAGATCAATTATCC+TGG 0.533193 4_4:-61591448 None:intergenic
AACAAGGGGAGGAGCTGGAT+CGG 0.533252 4_4:+61587175 Msa0692880:CDS
GAAGAGCGCTAATTCCGGTT+GGG 0.534003 4_4:-61586495 None:intergenic
GTAGCGGCATATGAGGCAAC+TGG 0.534791 4_4:+61588025 Msa0692880:CDS
GTGAGATTGAAAATTGAGAA+AGG 0.535032 4_4:-61586537 None:intergenic
GTTAAAACAAAATATCCTCC+AGG 0.535765 4_4:-61589384 None:intergenic
ACTATGCTGGACATTAATTG+TGG 0.536421 4_4:+61587950 Msa0692880:CDS
CGAAATTCAGGAATGAACTT+GGG 0.536683 4_4:+61592236 Msa0692880:three_prime_UTR
TTCATCTTGCTGGAATGCCA+CGG 0.539993 4_4:+61592317 Msa0692880:three_prime_UTR
TGTACTCAATTCAGAATCAA+AGG 0.544658 4_4:-61589869 None:intergenic
TCTCAAGAGACAATTGAACT+TGG 0.546341 4_4:-61588051 None:intergenic
GGACATGAGTTCTAATTATG+GGG 0.548684 4_4:+61590178 Msa0692880:CDS
GATAAAAGTCTCATCTTGCT+GGG 0.549313 4_4:-61589508 None:intergenic
ACCTGGACTGTTATGCATCT+CGG 0.551387 4_4:+61589547 Msa0692880:CDS
GTGGGACGTCTAGCAAGCGC+TGG 0.552130 4_4:+61589827 Msa0692880:CDS
CTAGACGTCCCACTTATACA+TGG 0.553190 4_4:-61589817 None:intergenic
TTGTTGTCTGGATTTGAACA+AGG 0.553871 4_4:+61587159 Msa0692880:CDS
AAGCAACTGTAGATTGTGAA+AGG 0.554952 4_4:+61592037 Msa0692880:three_prime_UTR
CAAGAAACGAATCGGATCGA+AGG 0.555401 4_4:-61586586 None:intergenic
ATCGGCACTGCCAAGTGTCA+AGG 0.555573 4_4:+61587193 Msa0692880:CDS
ACCGAGATGCATAACAGTCC+AGG 0.555849 4_4:-61589548 None:intergenic
AGGAAGTGCATTATAAGCCC+TGG 0.557714 4_4:-61590261 None:intergenic
TGTGGTAAAGATTGAAGTCA+AGG 0.557946 4_4:-61591997 None:intergenic
CTTCTGCTTCAAACCACCGC+TGG 0.559201 4_4:-61587073 None:intergenic
CATATGTCCGTGGGTAGGTG+GGG 0.559461 4_4:-61590991 None:intergenic
TCATCTTGCTGGAATGCCAC+GGG 0.559838 4_4:+61592318 Msa0692880:three_prime_UTR
GGTAGGGATATTATATGGAG+TGG 0.560775 4_4:+61587279 Msa0692880:CDS
ATCATGTTATATGGAGGCAG+TGG 0.561709 4_4:-61590143 None:intergenic
CAAGCTACAGGGTTCATCGC+GGG 0.562738 4_4:+61589419 Msa0692880:CDS
ATTGCGGAGATGATAGGGCT+AGG 0.563796 4_4:+61587689 Msa0692880:CDS
AGGCGAAGAATCAATCGCAT+TGG 0.564383 4_4:-61586965 None:intergenic
GGCATCATTTGGGATGAAAA+GGG 0.564906 4_4:+61588163 Msa0692880:CDS
AAGTATCACGTTGAACCCAA+TGG 0.567548 4_4:+61589449 Msa0692880:CDS
AAGATTCATGGTACTACGAT+AGG 0.568604 4_4:+61586712 Msa0692880:five_prime_UTR
AAGTGTCAAGGGAAGGAGAT+CGG 0.570175 4_4:+61587205 Msa0692880:CDS
TGGGAACGAAATTTCAGAGA+AGG 0.570850 4_4:-61589952 None:intergenic
GATACAGAGCTTCCTCAAGC+TGG 0.571400 4_4:+61587716 Msa0692880:CDS
CACTTGCAACTCAAGTACGT+TGG 0.574089 4_4:+61591421 Msa0692880:CDS
AGGATAATTGATCTTCAGAA+TGG 0.576325 4_4:+61591450 Msa0692880:CDS
ATTGAGAAAGGAAATGTGAA+TGG 0.581187 4_4:-61586525 None:intergenic
AAAGCACTTAGAGGCAGTGA+AGG 0.583429 4_4:-61592271 None:intergenic
AACCTTTCCCCACCTACCCA+CGG 0.584376 4_4:+61590984 Msa0692880:CDS
TGTTGTCTGGATTTGAACAA+GGG 0.584953 4_4:+61587160 Msa0692880:CDS
AATAATGGCGGTTTGTGTAG+CGG 0.585041 4_4:+61588009 Msa0692880:CDS
GTAGGGATATTATATGGAGT+GGG 0.586026 4_4:+61587280 Msa0692880:CDS
CACTGCCAAGTGTCAAGGGA+AGG 0.586851 4_4:+61587198 Msa0692880:CDS
AAAATTGTGTTCATCTGTCA+TGG 0.586965 4_4:-61591549 None:intergenic
TCTTAATTCGTCAAATTCAG+TGG 0.590787 4_4:+61586802 Msa0692880:five_prime_UTR
ATGCGATTGATTCTTCGCCT+AGG 0.593349 4_4:+61586968 Msa0692880:CDS
AGAAGAGCGCTAATTCCGGT+TGG 0.594110 4_4:-61586496 None:intergenic
ATTGCCTTTCACTCACAGGA+TGG 0.595160 4_4:+61587629 Msa0692880:CDS
TCTGACCATCCAAAGAGACC+TGG 0.597424 4_4:+61590110 Msa0692880:CDS
GAGCGTCCAACAGAGTTGCT+GGG 0.597757 4_4:-61589481 None:intergenic
GTTCAATTGTCTCTTGAGAG+AGG 0.597892 4_4:+61588055 Msa0692880:CDS
TCGGCACTGCCAAGTGTCAA+GGG 0.598276 4_4:+61587194 Msa0692880:CDS
AGATTACTCTCGCCAAATTG+CGG 0.598637 4_4:+61587673 Msa0692880:CDS
GTCTGGATTTGAACAAGGGG+AGG 0.599371 4_4:+61587164 Msa0692880:CDS
TTATTTATACAAATTACAGA+AGG 0.601455 4_4:+61587004 Msa0692880:CDS
TTTCATTCAATCAATTCCGC+CGG 0.602867 4_4:+61586610 Msa0692880:five_prime_UTR
GTTGTCACTTAAAATAATGG+CGG 0.607184 4_4:+61587997 Msa0692880:CDS
ATCCTCCAGGTTTAAGAACA+CGG 0.611539 4_4:-61589371 None:intergenic
GACATGAGTTCTAATTATGG+GGG 0.612104 4_4:+61590179 Msa0692880:CDS
ACCATGTCATATGATAATGA+TGG 0.612723 4_4:-61588124 None:intergenic
GAACACGGTCAACTTCTATG+AGG 0.612831 4_4:-61589356 None:intergenic
CACTTGTACCATGTATAAGT+GGG 0.613526 4_4:+61589809 Msa0692880:CDS
AGTGCATTATAAGCCCTGGC+AGG 0.615051 4_4:-61590257 None:intergenic
TCGATTGGGATTCAGATCGC+CGG 0.616385 4_4:-61586629 None:intergenic
TGAAGCAGATCATATGTCCG+TGG 0.620399 4_4:-61591001 None:intergenic
CCACTTATACATGGTACAAG+TGG 0.623728 4_4:-61589808 None:intergenic
AAACCTCTATCGAGTATGAG+AGG 0.624690 4_4:-61590281 None:intergenic
CATATAATATCCCTACCCCT+AGG 0.626144 4_4:-61587273 None:intergenic
GTTGTCTGGATTTGAACAAG+GGG 0.627393 4_4:+61587161 Msa0692880:CDS
GAAATTCAGGAATGAACTTG+GGG 0.628975 4_4:+61592237 Msa0692880:three_prime_UTR
TCTGGCAAACAAGTAACCGC+TGG 0.630480 4_4:-61591479 None:intergenic
GAAGCAGATCATATGTCCGT+GGG 0.637899 4_4:-61591000 None:intergenic
CAGATCATATGTCCGTGGGT+AGG 0.645203 4_4:-61590996 None:intergenic
GAGCTGAAATCTGTTTCCAG+CGG 0.647557 4_4:+61587057 Msa0692880:CDS
TACAGTGGGAACGATTGAGA+TGG 0.647875 4_4:+61591392 Msa0692880:CDS
TTTGAATGCTGCATTGCTGG+AGG 0.649123 4_4:+61590202 Msa0692880:CDS
ATTCCGTTACGTTGGCCTAG+GGG 0.651302 4_4:+61587258 Msa0692880:CDS
TTCCGGATCATGTTATATGG+AGG 0.654047 4_4:-61590149 None:intergenic
TTCAGAATGGCAGTGACCAG+CGG 0.655775 4_4:+61591463 Msa0692880:CDS
GGAAGACTTACACCAGCTTG+AGG 0.658019 4_4:-61587728 None:intergenic
TATTCAACTATGTAAAGATG+GGG 0.658313 4_4:+61589762 Msa0692880:CDS
GAACCCTGTAGCTTGCTCGT+AGG 0.661400 4_4:-61589411 None:intergenic
TCACCTACGAGCAAGCTACA+GGG 0.664233 4_4:+61589408 Msa0692880:CDS
TCCATCATTATCATATGACA+TGG 0.664798 4_4:+61588123 Msa0692880:CDS
GACCGTGTTCTTAAACCTGG+AGG 0.671928 4_4:+61589369 Msa0692880:CDS
CTACCCCTAGGCCAACGTAA+CGG 0.672375 4_4:-61587261 None:intergenic
ATTGGGATTCAGATCGCCGG+CGG 0.673739 4_4:-61586626 None:intergenic
GAGAAAGGAAATGTGAATGG+TGG 0.674837 4_4:-61586522 None:intergenic
AGTTGCCAATCATAGCAGGA+AGG 0.692650 4_4:-61588078 None:intergenic
TTAGCAGTTACATTGTGACA+AGG 0.697805 4_4:-61587135 None:intergenic
GCAAGCTACAGGGTTCATCG+CGG 0.701719 4_4:+61589418 Msa0692880:CDS
GGACAGGATACTACGACCAG+AGG 0.704211 4_4:+61591090 Msa0692880:CDS
ATGGTTCACTGTGCTCAATG+TGG 0.736335 4_4:+61588142 Msa0692880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTTTGAATTTTTTT+TGG + chr4_4:61586762-61586781 Msa0692880:five_prime_UTR 10.0%
!! TAATAATATTGAACTATTAA+TGG + chr4_4:61588842-61588861 Msa0692880:intron 10.0%
!!! TATGTTTATTTATCTTTTAT+AGG + chr4_4:61588943-61588962 Msa0692880:intron 10.0%
!!! TTATTTGGTAAATTATATTT+TGG + chr4_4:61590610-61590629 Msa0692880:intron 10.0%
!!! TTTCATTGTTAATTTTTTTA+AGG + chr4_4:61591159-61591178 Msa0692880:intron 10.0%
!! TTATTTATACAAATTACAGA+AGG + chr4_4:61587004-61587023 Msa0692880:CDS 15.0%
!!! AAAAGTAATGTAGTTTTTAT+TGG + chr4_4:61587495-61587514 Msa0692880:intron 15.0%
!!! TATTTTGTTCATAATATAAC+AGG + chr4_4:61587922-61587941 Msa0692880:intron 15.0%
!!! AAAAGGGTAATTTTTTTATT+AGG + chr4_4:61588179-61588198 Msa0692880:intron 15.0%
!!! TTATATCATCTAAATTTGTT+TGG + chr4_4:61589093-61589112 Msa0692880:intron 15.0%
!! AGTTATTATATTATCATAGT+AGG - chr4_4:61589695-61589714 None:intergenic 15.0%
!! AAAAAAACAAACTGAATTTA+TGG - chr4_4:61590732-61590751 None:intergenic 15.0%
!!! ATTTTTTCAAAAATAGTTTC+TGG - chr4_4:61591500-61591519 None:intergenic 15.0%
!!! AATTCATTTTTTTTTTGTCA+AGG + chr4_4:61592080-61592099 Msa0692880:three_prime_UTR 15.0%
!!! AATATTAACCAGTTCAATTT+TGG - chr4_4:61586895-61586914 None:intergenic 20.0%
!!! TTTGTTGTCACTTAAAATAA+TGG + chr4_4:61587994-61588013 Msa0692880:CDS 20.0%
!! ATCTAGTAAAACTGTATAAA+CGG - chr4_4:61588747-61588766 None:intergenic 20.0%
!! TTAATAAATACATAGACTAC+TGG - chr4_4:61589065-61589084 None:intergenic 20.0%
!! ACCAATCAAATGAATTAATT+AGG + chr4_4:61589160-61589179 Msa0692880:intron 20.0%
!! TCCTAATTAATTCATTTGAT+TGG - chr4_4:61589164-61589183 None:intergenic 20.0%
!! ATTATGTTATAGAAAAGTCA+TGG - chr4_4:61589261-61589280 None:intergenic 20.0%
!!! AAGGATATTTTTATTAGTGT+AGG + chr4_4:61589571-61589590 Msa0692880:intron 20.0%
!! ATAAAGAGAAATTCATGAAA+AGG - chr4_4:61589993-61590012 None:intergenic 20.0%
!! TCTATAATTTATAAACTGAC+TGG + chr4_4:61590362-61590381 Msa0692880:intron 20.0%
!! AAATTATCTTAAGTTACTGT+TGG - chr4_4:61590495-61590514 None:intergenic 20.0%
!!! GATTATTTTATTGCTGAAAA+TGG + chr4_4:61590539-61590558 Msa0692880:intron 20.0%
!!! TGCTTTTTAAAGGAAATTAT+TGG - chr4_4:61590671-61590690 None:intergenic 20.0%
!! AAACAAAATTAAGAAGCTAA+GGG - chr4_4:61590769-61590788 None:intergenic 20.0%
!! TTTCAAATTCATTCTCAAAA+GGG - chr4_4:61590792-61590811 None:intergenic 20.0%
!!! TTAATTTTTTTAAGGTGTAG+TGG + chr4_4:61591167-61591186 Msa0692880:intron 20.0%
!! ATAATTGTTTATAAGCAAGT+TGG + chr4_4:61591258-61591277 Msa0692880:intron 20.0%
!! ACGATGTGTATTAAAAAATT+AGG - chr4_4:61591341-61591360 None:intergenic 20.0%
!!! TTTTCTTGATTTGGTAAAAA+TGG + chr4_4:61591625-61591644 Msa0692880:intron 20.0%
!!! TTTCTTGATTTGGTAAAAAT+GGG + chr4_4:61591626-61591645 Msa0692880:intron 20.0%
!!! TTAGTTAGTTTAAAACATCA+TGG + chr4_4:61591656-61591675 Msa0692880:intron 20.0%
!! AAAAAATGCTAACAAGATAT+TGG - chr4_4:61592128-61592147 None:intergenic 20.0%
!!! TTTATTTCTTTGTTGTTCAT+CGG + chr4_4:61592156-61592175 Msa0692880:three_prime_UTR 20.0%
! AATGAAAACAAGAAACGAAT+CGG - chr4_4:61586597-61586616 None:intergenic 25.0%
!! AACAAATTGTGGATGATTTT+CGG + chr4_4:61586862-61586881 Msa0692880:CDS 25.0%
!! ATTAAGCGTGATTAGTATTT+TGG + chr4_4:61586912-61586931 Msa0692880:CDS 25.0%
!! AACGGAATTTTATATTCCTT+AGG - chr4_4:61587246-61587265 None:intergenic 25.0%
! AATATAAAATTCCGTTACGT+TGG + chr4_4:61587250-61587269 Msa0692880:CDS 25.0%
!!! GATTCAATGGTTTTTAAGTT+TGG + chr4_4:61587453-61587472 Msa0692880:intron 25.0%
!! TAGTTTTTATTGGATCTTTG+TGG + chr4_4:61587505-61587524 Msa0692880:intron 25.0%
!! AGTTTTTATTGGATCTTTGT+GGG + chr4_4:61587506-61587525 Msa0692880:intron 25.0%
!!! ATTTTGGTAAGTGACAATTT+TGG - chr4_4:61587564-61587583 None:intergenic 25.0%
!!! AATCACCAATTGTTGTTTTT+TGG + chr4_4:61587760-61587779 Msa0692880:intron 25.0%
!!! ATCACCAATTGTTGTTTTTT+GGG + chr4_4:61587761-61587780 Msa0692880:intron 25.0%
! CATTAATGACAATTTAGAAG+AGG - chr4_4:61587867-61587886 None:intergenic 25.0%
!!! TCATATGATAATGATGGATA+TGG - chr4_4:61588121-61588140 None:intergenic 25.0%
!! TTTTGCGTATATTTTGTAAC+CGG - chr4_4:61588381-61588400 None:intergenic 25.0%
! TCAAAGAAAGTTGTTGTATT+TGG + chr4_4:61588406-61588425 Msa0692880:intron 25.0%
!!! TGATGTATTGGTTCAAATTT+TGG - chr4_4:61588433-61588452 None:intergenic 25.0%
!! AACCAATACATCAATTTTGT+TGG + chr4_4:61588440-61588459 Msa0692880:intron 25.0%
!! CTTTTGCACATATTTTGTAA+CGG + chr4_4:61588468-61588487 Msa0692880:intron 25.0%
!! ATTTTATATCTCTAACACAC+AGG - chr4_4:61588610-61588629 None:intergenic 25.0%
! TTAAAAGTAATAACGTGTCA+AGG - chr4_4:61588679-61588698 None:intergenic 25.0%
! TAGATTTCAGAACTAAATAG+TGG + chr4_4:61588762-61588781 Msa0692880:intron 25.0%
! AGATTTCAGAACTAAATAGT+GGG + chr4_4:61588763-61588782 Msa0692880:intron 25.0%
! CTCATAAATTGCATACTATT+TGG + chr4_4:61588885-61588904 Msa0692880:intron 25.0%
! GTTTGGATTTATTAAATCAC+AGG + chr4_4:61589110-61589129 Msa0692880:intron 25.0%
! GAAGAAAAAGAAAGATAATG+GGG - chr4_4:61589191-61589210 None:intergenic 25.0%
! GGAAGAAAAAGAAAGATAAT+GGG - chr4_4:61589192-61589211 None:intergenic 25.0%
! TGGAAGAAAAAGAAAGATAA+TGG - chr4_4:61589193-61589212 None:intergenic 25.0%
! CTATTCAACTATGTAAAGAT+GGG + chr4_4:61589761-61589780 Msa0692880:CDS 25.0%
! TATTCAACTATGTAAAGATG+GGG + chr4_4:61589762-61589781 Msa0692880:CDS 25.0%
! GAATTTCTCTTTATTATTGC+AGG + chr4_4:61589999-61590018 Msa0692880:intron 25.0%
! TATTGCTGAAAATGGTTTAA+TGG + chr4_4:61590547-61590566 Msa0692880:intron 25.0%
!!! ATATTTTGGCATTTAATGCA+AGG + chr4_4:61590624-61590643 Msa0692880:intron 25.0%
! GAAACAAAATTAAGAAGCTA+AGG - chr4_4:61590770-61590789 None:intergenic 25.0%
! CTTTCAAATTCATTCTCAAA+AGG - chr4_4:61590793-61590812 None:intergenic 25.0%
! CAAAGCTCTTTGTAAAATAA+TGG + chr4_4:61590899-61590918 Msa0692880:intron 25.0%
! AAATGTTGATATTGATCTTC+AGG + chr4_4:61590957-61590976 Msa0692880:intron 25.0%
! TTCATTTCACTATTCAAACT+GGG + chr4_4:61591598-61591617 Msa0692880:intron 25.0%
!! TTTTGATCTGACAATATTAC+AGG - chr4_4:61591804-61591823 None:intergenic 25.0%
! TCACTATTTATACGATTTCA+GGG + chr4_4:61591932-61591951 Msa0692880:intron 25.0%
!!! TTTTTGAGAAAGAATGTGAA+TGG + chr4_4:61592210-61592229 Msa0692880:three_prime_UTR 25.0%
CAGAGAGAGAGATATATATA+AGG + chr4_4:61586407-61586426 Msa0692880:five_prime_UTR 30.0%
ATTGAGAAAGGAAATGTGAA+TGG - chr4_4:61586528-61586547 None:intergenic 30.0%
GTGAGATTGAAAATTGAGAA+AGG - chr4_4:61586540-61586559 None:intergenic 30.0%
TCTTAATTCGTCAAATTCAG+TGG + chr4_4:61586802-61586821 Msa0692880:five_prime_UTR 30.0%
!!! ACCAGTTCAATTTTGGTTTA+GGG - chr4_4:61586888-61586907 None:intergenic 30.0%
!!! AACCAGTTCAATTTTGGTTT+AGG - chr4_4:61586889-61586908 None:intergenic 30.0%
! TTGGCTTTCATTACATTGTT+TGG + chr4_4:61586931-61586950 Msa0692880:CDS 30.0%
! GGAATTTTATATTCCTTAGG+AGG - chr4_4:61587243-61587262 None:intergenic 30.0%
AGACGAAAGAAATTGATCTT+TGG - chr4_4:61587319-61587338 None:intergenic 30.0%
AAAGATCAATTTCTTTCGTC+TGG + chr4_4:61587318-61587337 Msa0692880:CDS 30.0%
TAGTTACAGACAACTTACAA+GGG - chr4_4:61587427-61587446 None:intergenic 30.0%
! GTAACTACTGATTGATTCAA+TGG + chr4_4:61587440-61587459 Msa0692880:intron 30.0%
!!! TGGTTTTTAAGTTTGGATGA+TGG + chr4_4:61587460-61587479 Msa0692880:intron 30.0%
! AGAAATCATTGCGACAATTT+TGG - chr4_4:61587580-61587599 None:intergenic 30.0%
!!! TCACCAATTGTTGTTTTTTG+GGG + chr4_4:61587762-61587781 Msa0692880:intron 30.0%
GACAATTTAGAAGAGGATAT+AGG - chr4_4:61587860-61587879 None:intergenic 30.0%
! GTTGTCACTTAAAATAATGG+CGG + chr4_4:61587997-61588016 Msa0692880:CDS 30.0%
TCCATCATTATCATATGACA+TGG + chr4_4:61588123-61588142 Msa0692880:CDS 30.0%
! ACCATGTCATATGATAATGA+TGG - chr4_4:61588127-61588146 None:intergenic 30.0%
! GGTGCTTTATTAAGTCTATA+AGG - chr4_4:61588239-61588258 None:intergenic 30.0%
! TTTGCGTATATTTTGTAACC+GGG - chr4_4:61588380-61588399 None:intergenic 30.0%
GTCCAACAAAATTGATGTAT+TGG - chr4_4:61588445-61588464 None:intergenic 30.0%
ACCAATCTGTATCATTTCAA+GGG - chr4_4:61588577-61588596 None:intergenic 30.0%
! AAATGATACAGATTGGTCAA+CGG + chr4_4:61588580-61588599 Msa0692880:intron 30.0%
ATCCAACAATCCAAGTTTAT+GGG + chr4_4:61588644-61588663 Msa0692880:intron 30.0%
AGTAAAACTGTATAAACGGA+GGG - chr4_4:61588743-61588762 None:intergenic 30.0%
TAGTAAAACTGTATAAACGG+AGG - chr4_4:61588744-61588763 None:intergenic 30.0%
CTTAATGGAAAAGCTCTTTA+AGG - chr4_4:61588814-61588833 None:intergenic 30.0%
! TAAAGAGCTTTTCCATTAAG+AGG + chr4_4:61588814-61588833 Msa0692880:intron 30.0%
ATTATTAGCATGCCTCTTAA+TGG - chr4_4:61588829-61588848 None:intergenic 30.0%
TATGAGTATCTGCAATTAGA+AGG - chr4_4:61588871-61588890 None:intergenic 30.0%
TGTTATAGAAAAGTCATGGA+AGG - chr4_4:61589257-61589276 None:intergenic 30.0%
ATAGCATTTCATACATAAGC+TGG - chr4_4:61589293-61589312 None:intergenic 30.0%
GTTAAAACAAAATATCCTCC+AGG - chr4_4:61589387-61589406 None:intergenic 30.0%
TTATCATAGTAGGTGATCAA+CGG - chr4_4:61589685-61589704 None:intergenic 30.0%
GCTATTCAACTATGTAAAGA+TGG + chr4_4:61589760-61589779 Msa0692880:CDS 30.0%
TGTACTCAATTCAGAATCAA+AGG - chr4_4:61589872-61589891 None:intergenic 30.0%
AAGGAAAAGCAGAACAAAAT+GGG - chr4_4:61589974-61589993 None:intergenic 30.0%
AAAGGAAAAGCAGAACAAAA+TGG - chr4_4:61589975-61589994 None:intergenic 30.0%
ATGTCTTCATAAAACTCTTC+AGG - chr4_4:61590032-61590051 None:intergenic 30.0%
TTTATGAAGACATGCATTTC+TGG + chr4_4:61590039-61590058 Msa0692880:CDS 30.0%
GATCAGCTGTAGATAATTAT+TGG + chr4_4:61590063-61590082 Msa0692880:CDS 30.0%
! ATGGACATGAGTTCTAATTA+TGG + chr4_4:61590176-61590195 Msa0692880:CDS 30.0%
! TGGACATGAGTTCTAATTAT+GGG + chr4_4:61590177-61590196 Msa0692880:CDS 30.0%
! ATACATTTATCAGGCTTTAG+TGG - chr4_4:61590426-61590445 None:intergenic 30.0%
GTAAGAGACATACATTTATC+AGG - chr4_4:61590435-61590454 None:intergenic 30.0%
TACCAAATAAGAAGTTGCTA+GGG - chr4_4:61590600-61590619 None:intergenic 30.0%
TTACCAAATAAGAAGTTGCT+AGG - chr4_4:61590601-61590620 None:intergenic 30.0%
!! ATATGCAGCATGCTTTTTAA+AGG - chr4_4:61590681-61590700 None:intergenic 30.0%
ATGCTGCATATAGTCATATA+CGG + chr4_4:61590690-61590709 Msa0692880:intron 30.0%
! GTAAAATAATGGTAATGCGT+AGG + chr4_4:61590910-61590929 Msa0692880:intron 30.0%
!!! ATACACATCGTTATTTTTGC+AGG + chr4_4:61591350-61591369 Msa0692880:intron 30.0%
!!! TACACATCGTTATTTTTGCA+GGG + chr4_4:61591351-61591370 Msa0692880:intron 30.0%
!!! ATCATTTTTTCCGATACAGT+GGG + chr4_4:61591378-61591397 Msa0692880:CDS 30.0%
! ATTCTGAAGATCAATTATCC+TGG - chr4_4:61591451-61591470 None:intergenic 30.0%
AGGATAATTGATCTTCAGAA+TGG + chr4_4:61591450-61591469 Msa0692880:CDS 30.0%
AAAATTGTGTTCATCTGTCA+TGG - chr4_4:61591552-61591571 None:intergenic 30.0%
!!! TGAACACAATTTTTTTGCTC+TGG + chr4_4:61591559-61591578 Msa0692880:three_prime_UTR 30.0%
CTTCATTTCACTATTCAAAC+TGG + chr4_4:61591597-61591616 Msa0692880:intron 30.0%
! CTGGGTAAATTTTCTTGATT+TGG + chr4_4:61591616-61591635 Msa0692880:intron 30.0%
AAAACAAGATCCATATCTGA+AGG - chr4_4:61591744-61591763 None:intergenic 30.0%
!! TTCAGATATGGATCTTGTTT+TGG + chr4_4:61591743-61591762 Msa0692880:intron 30.0%
AAACTCTGCAATTCAGAAAA+TGG + chr4_4:61591852-61591871 Msa0692880:intron 30.0%
GTCACTATTTATACGATTTC+AGG + chr4_4:61591931-61591950 Msa0692880:intron 30.0%
ATTTATACGATTTCAGGGAA+CGG + chr4_4:61591937-61591956 Msa0692880:intron 30.0%
ACTTCAATCTTTACCACAAT+AGG + chr4_4:61592002-61592021 Msa0692880:three_prime_UTR 30.0%
TCAATATCTTGAACCTATTG+TGG - chr4_4:61592018-61592037 None:intergenic 30.0%
TCACATTCTTTCTCAAAAAC+TGG - chr4_4:61592209-61592228 None:intergenic 30.0%
! AACCTAATTAAAGCACTTAG+AGG - chr4_4:61592283-61592302 None:intergenic 30.0%
TCTAAGTGCTTTAATTAGGT+TGG + chr4_4:61592282-61592301 Msa0692880:three_prime_UTR 30.0%
!! TGCTTTAATTAGGTTGGTTA+AGG + chr4_4:61592288-61592307 Msa0692880:three_prime_UTR 30.0%
CAACAACAATCCAAACAGTT+TGG + chr4_4:61586471-61586490 Msa0692880:five_prime_UTR 35.0%
! AATTGGGAGAATTAGGGTTT+TGG - chr4_4:61586566-61586585 None:intergenic 35.0%
TTTCATTCAATCAATTCCGC+CGG + chr4_4:61586610-61586629 Msa0692880:five_prime_UTR 35.0%
CAACTGAATCGCAATGAATT+CGG - chr4_4:61586676-61586695 None:intergenic 35.0%
AAGATTCATGGTACTACGAT+AGG + chr4_4:61586712-61586731 Msa0692880:five_prime_UTR 35.0%
TTAGCAGTTACATTGTGACA+AGG - chr4_4:61587138-61587157 None:intergenic 35.0%
!! GTAACTGCTAATTTGTTGTC+TGG + chr4_4:61587147-61587166 Msa0692880:CDS 35.0%
TTGTTGTCTGGATTTGAACA+AGG + chr4_4:61587159-61587178 Msa0692880:CDS 35.0%
TGTTGTCTGGATTTGAACAA+GGG + chr4_4:61587160-61587179 Msa0692880:CDS 35.0%
GTAGGGATATTATATGGAGT+GGG + chr4_4:61587280-61587299 Msa0692880:CDS 35.0%
! CTTACAAGGGTTTGAAATTG+CGG - chr4_4:61587414-61587433 None:intergenic 35.0%
GTAGTTACAGACAACTTACA+AGG - chr4_4:61587428-61587447 None:intergenic 35.0%
!! GTGACAATTTTGGTAAGTGA+CGG - chr4_4:61587554-61587573 None:intergenic 35.0%
ATTGTCGCAATGATTTCTCT+AGG + chr4_4:61587582-61587601 Msa0692880:intron 35.0%
GTACCCCAAAAAACAACAAT+TGG - chr4_4:61587768-61587787 None:intergenic 35.0%
!!! GACTGGTTTTGTACATAACA+TGG + chr4_4:61587804-61587823 Msa0692880:intron 35.0%
ACTATGCTGGACATTAATTG+TGG + chr4_4:61587950-61587969 Msa0692880:CDS 35.0%
CTATGCTGGACATTAATTGT+GGG + chr4_4:61587951-61587970 Msa0692880:CDS 35.0%
TCTCAAGAGACAATTGAACT+TGG - chr4_4:61588054-61588073 None:intergenic 35.0%
CTCTTTCATTCTTAGCTGAA+TGG + chr4_4:61588209-61588228 Msa0692880:intron 35.0%
AGAGACTATACTGACAAAGA+GGG - chr4_4:61588264-61588283 None:intergenic 35.0%
AAGAGACTATACTGACAAAG+AGG - chr4_4:61588265-61588284 None:intergenic 35.0%
! TTGCGTATATTTTGTAACCG+GGG - chr4_4:61588379-61588398 None:intergenic 35.0%
! TTGCACATATTTTGTAACGG+AGG + chr4_4:61588471-61588490 Msa0692880:intron 35.0%
!! TGCACATATTTTGTAACGGA+GGG + chr4_4:61588472-61588491 Msa0692880:intron 35.0%
AGTAAGAGAGAAAACTGTGT+AGG + chr4_4:61588495-61588514 Msa0692880:intron 35.0%
GTAAGAGAGAAAACTGTGTA+GGG + chr4_4:61588496-61588515 Msa0692880:intron 35.0%
CTGAAACCAATTAGTGATTG+AGG + chr4_4:61588542-61588561 Msa0692880:intron 35.0%
GACCAATCTGTATCATTTCA+AGG - chr4_4:61588578-61588597 None:intergenic 35.0%
AAACTTGGATTGTTGGATGA+AGG - chr4_4:61588642-61588661 None:intergenic 35.0%
CATCCAACAATCCAAGTTTA+TGG + chr4_4:61588643-61588662 Msa0692880:intron 35.0%
ATCCCATAAACTTGGATTGT+TGG - chr4_4:61588649-61588668 None:intergenic 35.0%
GATCAACTATCCCATAAACT+TGG - chr4_4:61588657-61588676 None:intergenic 35.0%
!! TAGGCTGCTTTAAAATACCT+CGG + chr4_4:61588962-61588981 Msa0692880:intron 35.0%
AATCATACATGTTCCCTTCT+AGG - chr4_4:61588994-61589013 None:intergenic 35.0%
! TCTAGATCTAAGTCACTTTC+TGG + chr4_4:61589018-61589037 Msa0692880:intron 35.0%
TGGAAAGAGCAAAAAGGAAA+AGG - chr4_4:61589233-61589252 None:intergenic 35.0%
ATAGAAAAGTCATGGAAGGA+TGG - chr4_4:61589253-61589272 None:intergenic 35.0%
GATAAAAGTCTCATCTTGCT+GGG - chr4_4:61589511-61589530 None:intergenic 35.0%
AGATAAAAGTCTCATCTTGC+TGG - chr4_4:61589512-61589531 None:intergenic 35.0%
! AGCAAGATGAGACTTTTATC+TGG + chr4_4:61589511-61589530 Msa0692880:CDS 35.0%
CACTTGTACCATGTATAAGT+GGG + chr4_4:61589809-61589828 Msa0692880:CDS 35.0%
ACATTCCGGATCATGTTATA+TGG - chr4_4:61590155-61590174 None:intergenic 35.0%
TAACATGATCCGGAATGTTA+TGG + chr4_4:61590157-61590176 Msa0692880:CDS 35.0%
AACTCATGTCCATAACATTC+CGG - chr4_4:61590169-61590188 None:intergenic 35.0%
! GGACATGAGTTCTAATTATG+GGG + chr4_4:61590178-61590197 Msa0692880:CDS 35.0%
! GACATGAGTTCTAATTATGG+GGG + chr4_4:61590179-61590198 Msa0692880:CDS 35.0%
ATTGCTGGAGGAGAAAAAAT+CGG + chr4_4:61590214-61590233 Msa0692880:CDS 35.0%
!! GAGTTAAGACTTTTGGTTGA+GGG + chr4_4:61590384-61590403 Msa0692880:intron 35.0%
TTCCCTAGCAACTTCTTATT+TGG + chr4_4:61590595-61590614 Msa0692880:intron 35.0%
TGCTGCATATAGTCATATAC+GGG + chr4_4:61590691-61590710 Msa0692880:intron 35.0%
CAAAGAAGAGAATTCAGTGA+TGG - chr4_4:61590868-61590887 None:intergenic 35.0%
CATCACTGAATTCTCTTCTT+TGG + chr4_4:61590866-61590885 Msa0692880:intron 35.0%
TATGATCTGCTTCATGCAAA+TGG + chr4_4:61591010-61591029 Msa0692880:CDS 35.0%
CAGCATGATAGACTTATTCT+TGG + chr4_4:61591063-61591082 Msa0692880:CDS 35.0%
GATAGACTTATTCTTGGAGA+TGG + chr4_4:61591069-61591088 Msa0692880:CDS 35.0%
!!! GATCATTTTTTCCGATACAG+TGG + chr4_4:61591377-61591396 Msa0692880:CDS 35.0%
!!! TCTTGTTTTGGCTCTAACAT+AGG + chr4_4:61591755-61591774 Msa0692880:intron 35.0%
!!! CTTGTTTTGGCTCTAACATA+GGG + chr4_4:61591756-61591775 Msa0692880:intron 35.0%
AATATTACAGGATGACACAC+GGG - chr4_4:61591792-61591811 None:intergenic 35.0%
CAATATTACAGGATGACACA+CGG - chr4_4:61591793-61591812 None:intergenic 35.0%
TAGGAGGACTTTAGTTATCA+AGG - chr4_4:61591831-61591850 None:intergenic 35.0%
TTCTGAATTGCAGAGTTTCT+AGG - chr4_4:61591850-61591869 None:intergenic 35.0%
TTCAGATGTATGCTATAGCT+AGG - chr4_4:61591904-61591923 None:intergenic 35.0%
TGTGGTAAAGATTGAAGTCA+AGG - chr4_4:61592000-61592019 None:intergenic 35.0%
AAGCAACTGTAGATTGTGAA+AGG + chr4_4:61592037-61592056 Msa0692880:three_prime_UTR 35.0%
AAGTTCATTCCTGAATTTCG+TGG - chr4_4:61592236-61592255 None:intergenic 35.0%
ACGAAATTCAGGAATGAACT+TGG + chr4_4:61592235-61592254 Msa0692880:three_prime_UTR 35.0%
CGAAATTCAGGAATGAACTT+GGG + chr4_4:61592236-61592255 Msa0692880:three_prime_UTR 35.0%
GAAATTCAGGAATGAACTTG+GGG + chr4_4:61592237-61592256 Msa0692880:three_prime_UTR 35.0%
TGCCTCTAAGTGCTTTAATT+AGG + chr4_4:61592278-61592297 Msa0692880:three_prime_UTR 35.0%
AAGGATAATCTTCATCTTGC+TGG + chr4_4:61592307-61592326 Msa0692880:three_prime_UTR 35.0%
GAGAAAGGAAATGTGAATGG+TGG - chr4_4:61586525-61586544 None:intergenic 40.0%
CGAAGGAATTGGGAGAATTA+GGG - chr4_4:61586572-61586591 None:intergenic 40.0%
TCGAAGGAATTGGGAGAATT+AGG - chr4_4:61586573-61586592 None:intergenic 40.0%
TTGAGCAATGTCGATCGATT+GGG - chr4_4:61586646-61586665 None:intergenic 40.0%
ATTGAGCAATGTCGATCGAT+TGG - chr4_4:61586647-61586666 None:intergenic 40.0%
ATCTCGAACGCTAAGATTCA+TGG + chr4_4:61586700-61586719 Msa0692880:five_prime_UTR 40.0%
ATGGTACTACGATAGGTTCA+TGG + chr4_4:61586719-61586738 Msa0692880:five_prime_UTR 40.0%
GCTCTTTGTGGAACAAATTG+TGG + chr4_4:61586851-61586870 Msa0692880:CDS 40.0%
GCCCTAAACCAAAATTGAAC+TGG + chr4_4:61586884-61586903 Msa0692880:CDS 40.0%
! GCGTGTAGCTGTTGATTATT+TGG + chr4_4:61587035-61587054 Msa0692880:CDS 40.0%
! GTTTGAAGCAGAAGGAGTTA+GGG + chr4_4:61587082-61587101 Msa0692880:CDS 40.0%
! TAGGGCTTTGTGGAAAAGAA+AGG + chr4_4:61587100-61587119 Msa0692880:CDS 40.0%
! AGGGCTTTGTGGAAAAGAAA+GGG + chr4_4:61587101-61587120 Msa0692880:CDS 40.0%
GTTGTCTGGATTTGAACAAG+GGG + chr4_4:61587161-61587180 Msa0692880:CDS 40.0%
CATATAATATCCCTACCCCT+AGG - chr4_4:61587276-61587295 None:intergenic 40.0%
CTAGGGGTAGGGATATTATA+TGG + chr4_4:61587274-61587293 Msa0692880:CDS 40.0%
GGTAGGGATATTATATGGAG+TGG + chr4_4:61587279-61587298 Msa0692880:CDS 40.0%
!! GTATGACCAAAAGGTACTCT+CGG + chr4_4:61587343-61587362 Msa0692880:intron 40.0%
!!! CTAATACCGAGAGTACCTTT+TGG - chr4_4:61587352-61587371 None:intergenic 40.0%
TCAAATTGCCTTTCACTCAC+AGG + chr4_4:61587625-61587644 Msa0692880:CDS 40.0%
CAGGATGGTTTGATCTTTGA+CGG + chr4_4:61587644-61587663 Msa0692880:CDS 40.0%
AGATTACTCTCGCCAAATTG+CGG + chr4_4:61587673-61587692 Msa0692880:CDS 40.0%
! CAATTGGTGATTATGACGAG+TGG - chr4_4:61587752-61587771 None:intergenic 40.0%
GTACATAACATGGTTCAGCA+CGG + chr4_4:61587814-61587833 Msa0692880:intron 40.0%
ATAACAGGTTCGAACTATGC+TGG + chr4_4:61587937-61587956 Msa0692880:intron 40.0%
CTGGACATTAATTGTGGGTT+TGG + chr4_4:61587956-61587975 Msa0692880:CDS 40.0%
! AATTGTGGGTTTGGTAGCTT+TGG + chr4_4:61587965-61587984 Msa0692880:CDS 40.0%
AATAATGGCGGTTTGTGTAG+CGG + chr4_4:61588009-61588028 Msa0692880:CDS 40.0%
GTTCAATTGTCTCTTGAGAG+AGG + chr4_4:61588055-61588074 Msa0692880:CDS 40.0%
ATGAAGTTGCCAATCATAGC+AGG - chr4_4:61588085-61588104 None:intergenic 40.0%
TGCTCAATGTGGCATCATTT+GGG + chr4_4:61588153-61588172 Msa0692880:CDS 40.0%
! TGGCATCATTTGGGATGAAA+AGG + chr4_4:61588162-61588181 Msa0692880:CDS 40.0%
! GGCATCATTTGGGATGAAAA+GGG + chr4_4:61588163-61588182 Msa0692880:CDS 40.0%
ACTATACTGACAAAGAGGGT+TGG - chr4_4:61588260-61588279 None:intergenic 40.0%
TTTGATGAGAAATACTCCCC+CGG + chr4_4:61588359-61588378 Msa0692880:intron 40.0%
! TGCGTATATTTTGTAACCGG+GGG - chr4_4:61588378-61588397 None:intergenic 40.0%
TGTGTAGGGTGTACAGTATT+TGG + chr4_4:61588510-61588529 Msa0692880:intron 40.0%
CTGATGCCTCAATCACTAAT+TGG - chr4_4:61588551-61588570 None:intergenic 40.0%
GCCCTTGAAATGATACAGAT+TGG + chr4_4:61588573-61588592 Msa0692880:intron 40.0%
AAGAGTCGATAGAGATGCTA+TGG - chr4_4:61588915-61588934 None:intergenic 40.0%
!! AGGCTGCTTTAAAATACCTC+GGG + chr4_4:61588963-61588982 Msa0692880:intron 40.0%
AGGCAATGAGATCAAGAGAA+TGG - chr4_4:61589213-61589232 None:intergenic 40.0%
GAAGGATGGAAAGAGCAAAA+AGG - chr4_4:61589239-61589258 None:intergenic 40.0%
AGGTCATTGTTAGAGCTCAA+AGG - chr4_4:61589316-61589335 None:intergenic 40.0%
AACATTCCATCTGCATGATG+AGG - chr4_4:61589336-61589355 None:intergenic 40.0%
ATCCTCCAGGTTTAAGAACA+CGG - chr4_4:61589374-61589393 None:intergenic 40.0%
AAGTATCACGTTGAACCCAA+TGG + chr4_4:61589449-61589468 Msa0692880:CDS 40.0%
CCACTTATACATGGTACAAG+TGG - chr4_4:61589811-61589830 None:intergenic 40.0%
CCACTTGTACCATGTATAAG+TGG + chr4_4:61589808-61589827 Msa0692880:CDS 40.0%
GCTGGATTGCAATACAAAAC+AGG + chr4_4:61589845-61589864 Msa0692880:CDS 40.0%
ACAGCTGAGCTTGAAATTCA+TGG + chr4_4:61589889-61589908 Msa0692880:CDS 40.0%
CGAAATTTCAGAGAAGGAAG+AGG - chr4_4:61589949-61589968 None:intergenic 40.0%
TGGGAACGAAATTTCAGAGA+AGG - chr4_4:61589955-61589974 None:intergenic 40.0%
GGATGGTCAGAGAAAATTAG+TGG - chr4_4:61590101-61590120 None:intergenic 40.0%
ATCATGTTATATGGAGGCAG+TGG - chr4_4:61590146-61590165 None:intergenic 40.0%
TGCCTCCATATAACATGATC+CGG + chr4_4:61590147-61590166 Msa0692880:CDS 40.0%
TTCCGGATCATGTTATATGG+AGG - chr4_4:61590152-61590171 None:intergenic 40.0%
AAACCTCTATCGAGTATGAG+AGG - chr4_4:61590284-61590303 None:intergenic 40.0%
! ATACTCGATAGAGGTTTTGC+TGG + chr4_4:61590287-61590306 Msa0692880:CDS 40.0%
! CTGACTGGAGTTAAGACTTT+TGG + chr4_4:61590377-61590396 Msa0692880:intron 40.0%
!! GGAGTTAAGACTTTTGGTTG+AGG + chr4_4:61590383-61590402 Msa0692880:intron 40.0%
TATGTCTCTTACACTCTCAC+TGG + chr4_4:61590443-61590462 Msa0692880:intron 40.0%
GCTGCATATAGTCATATACG+GGG + chr4_4:61590692-61590711 Msa0692880:intron 40.0%
!! TTAAGAAGCTAAGGGTGTCT+TGG - chr4_4:61590761-61590780 None:intergenic 40.0%
GCATGGTGTTCCTTAGAATT+GGG - chr4_4:61590831-61590850 None:intergenic 40.0%
ACTTATTCTTGGAGATGGAC+AGG + chr4_4:61591074-61591093 Msa0692880:CDS 40.0%
AAACACCAAGATCATACCTC+TGG - chr4_4:61591109-61591128 None:intergenic 40.0%
GTGTACTTTCCATCCTCTTT+GGG + chr4_4:61591200-61591219 Msa0692880:intron 40.0%
TTTGGGAACAACCTTCAGAA+AGG + chr4_4:61591217-61591236 Msa0692880:intron 40.0%
GATGAGATCATCCTTTCTGA+AGG - chr4_4:61591231-61591250 None:intergenic 40.0%
TCGATCACAGTGTAATGTGA+AGG + chr4_4:61591306-61591325 Msa0692880:intron 40.0%
!!! CATCGTTATTTTTGCAGGGA+TGG + chr4_4:61591355-61591374 Msa0692880:intron 40.0%
ACTTGCAACTCAAGTACGTT+GGG + chr4_4:61591422-61591441 Msa0692880:CDS 40.0%
TGTTCATCTGTCATGGTGAT+TGG - chr4_4:61591545-61591564 None:intergenic 40.0%
AGACCTTGAATCTCACATGA+CGG - chr4_4:61591700-61591719 None:intergenic 40.0%
GTGAGATTCAAGGTCTGAAT+TGG + chr4_4:61591704-61591723 Msa0692880:intron 40.0%
GATACAGACTCCTTCAGATA+TGG + chr4_4:61591731-61591750 Msa0692880:intron 40.0%
! TGAATTGCAGAGTTTCTAGG+AGG - chr4_4:61591847-61591866 None:intergenic 40.0%
!! CAGGGAACGGATTGTTTAAT+TGG + chr4_4:61591950-61591969 Msa0692880:intron 40.0%
!! GTGAAGAAGAGCGCTAATTC+CGG - chr4_4:61586503-61586522 None:intergenic 45.0%
CGAATCGGATCGAAGGAATT+GGG - chr4_4:61586582-61586601 None:intergenic 45.0%
ACGAATCGGATCGAAGGAAT+TGG - chr4_4:61586583-61586602 None:intergenic 45.0%
CAAGAAACGAATCGGATCGA+AGG - chr4_4:61586589-61586608 None:intergenic 45.0%
! CAGTGGCGAATTCACGATTT+TGG + chr4_4:61586819-61586838 Msa0692880:five_prime_UTR 45.0%
TGGTCATGAGAAGCTCTTTG+TGG + chr4_4:61586839-61586858 Msa0692880:exon 45.0%
AGGCGAAGAATCAATCGCAT+TGG - chr4_4:61586968-61586987 None:intergenic 45.0%
! ATGCGATTGATTCTTCGCCT+AGG + chr4_4:61586968-61586987 Msa0692880:CDS 45.0%
GAGCTGAAATCTGTTTCCAG+CGG + chr4_4:61587057-61587076 Msa0692880:CDS 45.0%
! GGTTTGAAGCAGAAGGAGTT+AGG + chr4_4:61587081-61587100 Msa0692880:CDS 45.0%
AAGTGTCAAGGGAAGGAGAT+CGG + chr4_4:61587205-61587224 Msa0692880:CDS 45.0%
! AAATTCCGTTACGTTGGCCT+AGG + chr4_4:61587256-61587275 Msa0692880:CDS 45.0%
! AATTCCGTTACGTTGGCCTA+GGG + chr4_4:61587257-61587276 Msa0692880:CDS 45.0%
! CGTCTGGAAGTATGACCAAA+AGG + chr4_4:61587334-61587353 Msa0692880:CDS 45.0%
ATTGCCTTTCACTCACAGGA+TGG + chr4_4:61587629-61587648 Msa0692880:CDS 45.0%
CAAACCATCCTGTGAGTGAA+AGG - chr4_4:61587636-61587655 None:intergenic 45.0%
GCCAAATTGCGGAGATGATA+GGG + chr4_4:61587684-61587703 Msa0692880:CDS 45.0%
!! TGGGGTACCATGATGTTTTG+TGG + chr4_4:61587780-61587799 Msa0692880:intron 45.0%
!! GGGGTACCATGATGTTTTGT+GGG + chr4_4:61587781-61587800 Msa0692880:intron 45.0%
! GGGTACCATGATGTTTTGTG+GGG + chr4_4:61587782-61587801 Msa0692880:intron 45.0%
AGTTGCCAATCATAGCAGGA+AGG - chr4_4:61588081-61588100 None:intergenic 45.0%
ATGGTTCACTGTGCTCAATG+TGG + chr4_4:61588142-61588161 Msa0692880:CDS 45.0%
GTGCTCAATGTGGCATCATT+TGG + chr4_4:61588152-61588171 Msa0692880:CDS 45.0%
TAAACGGAGGGTGACAAGTA+TGG - chr4_4:61588731-61588750 None:intergenic 45.0%
!! GGTTTGCTTTTGCCTGTTTG+TGG + chr4_4:61589039-61589058 Msa0692880:intron 45.0%
ATAGACTACTGGCCACAAAC+AGG - chr4_4:61589054-61589073 None:intergenic 45.0%
CAATGACCTCATCATGCAGA+TGG + chr4_4:61589327-61589346 Msa0692880:intron 45.0%
GAACACGGTCAACTTCTATG+AGG - chr4_4:61589359-61589378 None:intergenic 45.0%
GTTGACCGTGTTCTTAAACC+TGG + chr4_4:61589366-61589385 Msa0692880:CDS 45.0%
ACCTGGACTGTTATGCATCT+CGG + chr4_4:61589547-61589566 Msa0692880:CDS 45.0%
GACTGTTATGCATCTCGGTA+AGG + chr4_4:61589552-61589571 Msa0692880:intron 45.0%
! TTGCTAGCAGTAGTTGATGC+AGG - chr4_4:61589647-61589666 None:intergenic 45.0%
CTAGACGTCCCACTTATACA+TGG - chr4_4:61589820-61589839 None:intergenic 45.0%
TCTTCATCTCCAGGTCTCTT+TGG - chr4_4:61590122-61590141 None:intergenic 45.0%
TTTGAATGCTGCATTGCTGG+AGG + chr4_4:61590202-61590221 Msa0692880:CDS 45.0%
TGGAGGAGAAAAAATCGGTG+TGG + chr4_4:61590219-61590238 Msa0692880:CDS 45.0%
GGAGGAGAAAAAATCGGTGT+GGG + chr4_4:61590220-61590239 Msa0692880:CDS 45.0%
TCATGAATGTTGTTCCTGCC+AGG + chr4_4:61590243-61590262 Msa0692880:CDS 45.0%
CATGAATGTTGTTCCTGCCA+GGG + chr4_4:61590244-61590263 Msa0692880:CDS 45.0%
! AGGAAGTGCATTATAAGCCC+TGG - chr4_4:61590264-61590283 None:intergenic 45.0%
CTTCCTCTCATACTCGATAG+AGG + chr4_4:61590278-61590297 Msa0692880:CDS 45.0%
!! TTGCTGGTGTTATGCATGAC+TGG + chr4_4:61590303-61590322 Msa0692880:CDS 45.0%
CGCATGGTGTTCCTTAGAAT+TGG - chr4_4:61590832-61590851 None:intergenic 45.0%
TGGAACTACAAAACAGCGCA+TGG - chr4_4:61590848-61590867 None:intergenic 45.0%
GAAGCAGATCATATGTCCGT+GGG - chr4_4:61591003-61591022 None:intergenic 45.0%
TGAAGCAGATCATATGTCCG+TGG - chr4_4:61591004-61591023 None:intergenic 45.0%
! TACGACCAGAGGTATGATCT+TGG + chr4_4:61591101-61591120 Msa0692880:intron 45.0%
! TTCCATTTTCCTGATCGTGC+TGG + chr4_4:61591132-61591151 Msa0692880:intron 45.0%
TTCCAGCACGATCAGGAAAA+TGG - chr4_4:61591137-61591156 None:intergenic 45.0%
TGAAACTTTCCAGCACGATC+AGG - chr4_4:61591144-61591163 None:intergenic 45.0%
CGTGTACTTTCCATCCTCTT+TGG + chr4_4:61591199-61591218 Msa0692880:intron 45.0%
AAGGTTGTTCCCAAAGAGGA+TGG - chr4_4:61591212-61591231 None:intergenic 45.0%
TCTGAAGGTTGTTCCCAAAG+AGG - chr4_4:61591216-61591235 None:intergenic 45.0%
CACTTGCAACTCAAGTACGT+TGG + chr4_4:61591421-61591440 Msa0692880:CDS 45.0%
GACCTTGAATCTCACATGAC+GGG - chr4_4:61591699-61591718 None:intergenic 45.0%
TGTGAATGGCCACGAAATTC+AGG + chr4_4:61592224-61592243 Msa0692880:three_prime_UTR 45.0%
! AAAGCACTTAGAGGCAGTGA+AGG - chr4_4:61592274-61592293 None:intergenic 45.0%
TTCATCTTGCTGGAATGCCA+CGG + chr4_4:61592317-61592336 Msa0692880:three_prime_UTR 45.0%
CCAAACAGTTTGGACCCAAC+CGG + chr4_4:61586481-61586500 Msa0692880:five_prime_UTR 50.0%
!! GAAGAGCGCTAATTCCGGTT+GGG - chr4_4:61586498-61586517 None:intergenic 50.0%
!! AGAAGAGCGCTAATTCCGGT+TGG - chr4_4:61586499-61586518 None:intergenic 50.0%
TCGATTGGGATTCAGATCGC+CGG - chr4_4:61586632-61586651 None:intergenic 50.0%
TGATTCTTCGCCTAGGAGAC+AGG + chr4_4:61586975-61586994 Msa0692880:CDS 50.0%
ATAAGCGAAGCCTGTCTCCT+AGG - chr4_4:61586988-61587007 None:intergenic 50.0%
CTGAAATCTGTTTCCAGCGG+TGG + chr4_4:61587060-61587079 Msa0692880:CDS 50.0%
CAGAAGGAGTTAGGGCTTTG+TGG + chr4_4:61587090-61587109 Msa0692880:CDS 50.0%
GTCTGGATTTGAACAAGGGG+AGG + chr4_4:61587164-61587183 Msa0692880:CDS 50.0%
ATTTGAACAAGGGGAGGAGC+TGG + chr4_4:61587170-61587189 Msa0692880:CDS 50.0%
GATCTCCTTCCCTTGACACT+TGG - chr4_4:61587206-61587225 None:intergenic 50.0%
! AAGGGAAGGAGATCGGTGTT+TGG + chr4_4:61587212-61587231 Msa0692880:CDS 50.0%
! GTGTTTGGTTCGTCCTCCTA+AGG + chr4_4:61587227-61587246 Msa0692880:CDS 50.0%
! ATTCCGTTACGTTGGCCTAG+GGG + chr4_4:61587258-61587277 Msa0692880:CDS 50.0%
CGCCAAATTGCGGAGATGAT+AGG + chr4_4:61587683-61587702 Msa0692880:CDS 50.0%
GCCCTATCATCTCCGCAATT+TGG - chr4_4:61587688-61587707 None:intergenic 50.0%
ATTGCGGAGATGATAGGGCT+AGG + chr4_4:61587689-61587708 Msa0692880:CDS 50.0%
GATACAGAGCTTCCTCAAGC+TGG + chr4_4:61587716-61587735 Msa0692880:CDS 50.0%
GGAAGACTTACACCAGCTTG+AGG - chr4_4:61587731-61587750 None:intergenic 50.0%
CCAGTCCCCACAAAACATCA+TGG - chr4_4:61587790-61587809 None:intergenic 50.0%
! CCATGATGTTTTGTGGGGAC+TGG + chr4_4:61587787-61587806 Msa0692880:intron 50.0%
GGTTTGTGTAGCGGCATATG+AGG + chr4_4:61588018-61588037 Msa0692880:CDS 50.0%
AGAGGCCTTCCTGCTATGAT+TGG + chr4_4:61588073-61588092 Msa0692880:CDS 50.0%
TACCTCGGGAAAGACCTAGA+AGG + chr4_4:61588977-61588996 Msa0692880:intron 50.0%
ACCTCGGGAAAGACCTAGAA+GGG + chr4_4:61588978-61588997 Msa0692880:intron 50.0%
GACCGTGTTCTTAAACCTGG+AGG + chr4_4:61589369-61589388 Msa0692880:CDS 50.0%
ATCACCTACGAGCAAGCTAC+AGG + chr4_4:61589407-61589426 Msa0692880:CDS 50.0%
TCACCTACGAGCAAGCTACA+GGG + chr4_4:61589408-61589427 Msa0692880:CDS 50.0%
GCTGGGTATGCTCTTCCATT+GGG - chr4_4:61589467-61589486 None:intergenic 50.0%
TGCTGGGTATGCTCTTCCAT+TGG - chr4_4:61589468-61589487 None:intergenic 50.0%
AGCATACCCAGCAACTCTGT+TGG + chr4_4:61589475-61589494 Msa0692880:CDS 50.0%
AAGTCTCATCTTGCTGGGCT+AGG - chr4_4:61589506-61589525 None:intergenic 50.0%
ACCGAGATGCATAACAGTCC+AGG - chr4_4:61589551-61589570 None:intergenic 50.0%
TCTGACCATCCAAAGAGACC+TGG + chr4_4:61590110-61590129 Msa0692880:CDS 50.0%
CATCTCCAGGTCTCTTTGGA+TGG - chr4_4:61590118-61590137 None:intergenic 50.0%
GGGTTTGAATGCTGCATTGC+TGG + chr4_4:61590199-61590218 Msa0692880:CDS 50.0%
AGTGCATTATAAGCCCTGGC+AGG - chr4_4:61590260-61590279 None:intergenic 50.0%
GCAGCATGCACCCAATTCTA+AGG + chr4_4:61590818-61590837 Msa0692880:intron 50.0%
TCATATGTCCGTGGGTAGGT+GGG - chr4_4:61590995-61591014 None:intergenic 50.0%
ATCATATGTCCGTGGGTAGG+TGG - chr4_4:61590996-61591015 None:intergenic 50.0%
CAGATCATATGTCCGTGGGT+AGG - chr4_4:61590999-61591018 None:intergenic 50.0%
TTCAGAATGGCAGTGACCAG+CGG + chr4_4:61591463-61591482 Msa0692880:CDS 50.0%
TCTGGCAAACAAGTAACCGC+TGG - chr4_4:61591482-61591501 None:intergenic 50.0%
TGCCCGTCATGTGAGATTCA+AGG + chr4_4:61591694-61591713 Msa0692880:intron 50.0%
TCATCTTGCTGGAATGCCAC+GGG + chr4_4:61592318-61592337 Msa0692880:three_prime_UTR 50.0%
CCGGTTGGGTCCAAACTGTT+TGG - chr4_4:61586484-61586503 None:intergenic 55.0%
ATTGGGATTCAGATCGCCGG+CGG - chr4_4:61586629-61586648 None:intergenic 55.0%
CTTCTGCTTCAAACCACCGC+TGG - chr4_4:61587076-61587095 None:intergenic 55.0%
! CAGCGGTGGTTTGAAGCAGA+AGG + chr4_4:61587074-61587093 Msa0692880:CDS 55.0%
AACAAGGGGAGGAGCTGGAT+CGG + chr4_4:61587175-61587194 Msa0692880:CDS 55.0%
ATCGGCACTGCCAAGTGTCA+AGG + chr4_4:61587193-61587212 Msa0692880:CDS 55.0%
TCGGCACTGCCAAGTGTCAA+GGG + chr4_4:61587194-61587213 Msa0692880:CDS 55.0%
CACTGCCAAGTGTCAAGGGA+AGG + chr4_4:61587198-61587217 Msa0692880:CDS 55.0%
CTACCCCTAGGCCAACGTAA+CGG - chr4_4:61587264-61587283 None:intergenic 55.0%
! GTTACGTTGGCCTAGGGGTA+GGG + chr4_4:61587263-61587282 Msa0692880:CDS 55.0%
GTAGCGGCATATGAGGCAAC+TGG + chr4_4:61588025-61588044 Msa0692880:CDS 55.0%
TCCCTTCTAGGTCTTTCCCG+AGG - chr4_4:61588982-61589001 None:intergenic 55.0%
!! GAACCCTGTAGCTTGCTCGT+AGG - chr4_4:61589414-61589433 None:intergenic 55.0%
GCAAGCTACAGGGTTCATCG+CGG + chr4_4:61589418-61589437 Msa0692880:CDS 55.0%
CAAGCTACAGGGTTCATCGC+GGG + chr4_4:61589419-61589438 Msa0692880:CDS 55.0%
GAGCGTCCAACAGAGTTGCT+GGG - chr4_4:61589484-61589503 None:intergenic 55.0%
GGCAGTGGATCTTCATCTCC+AGG - chr4_4:61590131-61590150 None:intergenic 55.0%
AACCTTTCCCCACCTACCCA+CGG + chr4_4:61590984-61591003 Msa0692880:CDS 55.0%
CATATGTCCGTGGGTAGGTG+GGG - chr4_4:61590994-61591013 None:intergenic 55.0%
GGACAGGATACTACGACCAG+AGG + chr4_4:61591090-61591109 Msa0692880:CDS 55.0%
CTCAAGTACGTTGGGAAGCC+AGG + chr4_4:61591430-61591449 Msa0692880:CDS 55.0%
! GGCTCTAACATAGGGTCCCA+CGG + chr4_4:61591764-61591783 Msa0692880:intron 55.0%
GCTCTAACATAGGGTCCCAC+GGG + chr4_4:61591765-61591784 Msa0692880:intron 55.0%
! CGTTACGTTGGCCTAGGGGT+AGG + chr4_4:61587262-61587281 Msa0692880:CDS 60.0%
! GGAGCGTCCAACAGAGTTGC+TGG - chr4_4:61589485-61589504 None:intergenic 60.0%
CTGGCAGAAGACTGCTGACC+TGG + chr4_4:61589530-61589549 Msa0692880:CDS 60.0%
GTGGGACGTCTAGCAAGCGC+TGG + chr4_4:61589827-61589846 Msa0692880:CDS 65.0%
GTCCGTGGGTAGGTGGGGAA+AGG - chr4_4:61590989-61591008 None:intergenic 65.0%
GGATGACACACGGGACCCGT+GGG - chr4_4:61591783-61591802 None:intergenic 65.0%
AGGATGACACACGGGACCCG+TGG - chr4_4:61591784-61591803 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 61586406 61592350 61586406 ID=Msa0692880;Name=Msa0692880
chr4_4 mRNA 61586406 61592350 61586406 ID=Msa0692880-mRNA-1;Parent=Msa0692880;Name=Msa0692880-mRNA-1;_AED=0.08;_eAED=0.08;_QI=438|0.87|0.88|1|0.87|0.77|9|457|638
chr4_4 exon 61586406 61587355 61586406 ID=Msa0692880-mRNA-1:exon:17099;Parent=Msa0692880-mRNA-1
chr4_4 exon 61587604 61587739 61587604 ID=Msa0692880-mRNA-1:exon:17100;Parent=Msa0692880-mRNA-1
chr4_4 exon 61587944 61588184 61587944 ID=Msa0692880-mRNA-1:exon:17101;Parent=Msa0692880-mRNA-1
chr4_4 exon 61589346 61589568 61589346 ID=Msa0692880-mRNA-1:exon:17102;Parent=Msa0692880-mRNA-1
chr4_4 exon 61589750 61589967 61589750 ID=Msa0692880-mRNA-1:exon:17103;Parent=Msa0692880-mRNA-1
chr4_4 exon 61590021 61590324 61590021 ID=Msa0692880-mRNA-1:exon:17104;Parent=Msa0692880-mRNA-1
chr4_4 exon 61590979 61591111 61590979 ID=Msa0692880-mRNA-1:exon:17105;Parent=Msa0692880-mRNA-1
chr4_4 exon 61591372 61591580 61591372 ID=Msa0692880-mRNA-1:exon:17106;Parent=Msa0692880-mRNA-1
chr4_4 exon 61591953 61592350 61591953 ID=Msa0692880-mRNA-1:exon:17107;Parent=Msa0692880-mRNA-1
chr4_4 five_prime_UTR 61586406 61586843 61586406 ID=Msa0692880-mRNA-1:five_prime_utr;Parent=Msa0692880-mRNA-1
chr4_4 CDS 61586844 61587355 61586844 ID=Msa0692880-mRNA-1:cds;Parent=Msa0692880-mRNA-1
chr4_4 CDS 61587604 61587739 61587604 ID=Msa0692880-mRNA-1:cds;Parent=Msa0692880-mRNA-1
chr4_4 CDS 61587944 61588184 61587944 ID=Msa0692880-mRNA-1:cds;Parent=Msa0692880-mRNA-1
chr4_4 CDS 61589346 61589568 61589346 ID=Msa0692880-mRNA-1:cds;Parent=Msa0692880-mRNA-1
chr4_4 CDS 61589750 61589967 61589750 ID=Msa0692880-mRNA-1:cds;Parent=Msa0692880-mRNA-1
chr4_4 CDS 61590021 61590324 61590021 ID=Msa0692880-mRNA-1:cds;Parent=Msa0692880-mRNA-1
chr4_4 CDS 61590979 61591111 61590979 ID=Msa0692880-mRNA-1:cds;Parent=Msa0692880-mRNA-1
chr4_4 CDS 61591372 61591521 61591372 ID=Msa0692880-mRNA-1:cds;Parent=Msa0692880-mRNA-1
chr4_4 three_prime_UTR 61591522 61591580 61591522 ID=Msa0692880-mRNA-1:three_prime_utr;Parent=Msa0692880-mRNA-1
chr4_4 three_prime_UTR 61591953 61592350 61591953 ID=Msa0692880-mRNA-1:three_prime_utr;Parent=Msa0692880-mRNA-1
Gene Sequence

>Msa0692880

ATGAGAAGCTCTTTGTGGAACAAATTGTGGATGATTTTCGGCCCTAAACCAAAATTGAACTGGTTAATATTAAGCGTGATTAGTATTTTGGCTTTCATTACATTGTTTGGTTCGTCATCTTCCAATGCGATTGATTCTTCGCCTAGGAGACAGGCTTCGCTTATTTATACAAATTACAGAAGGATTAAAGAGCGTGTAGCTGTTGATTATTTGGAGCTGAAATCTGTTTCCAGCGGTGGTTTGAAGCAGAAGGAGTTAGGGCTTTGTGGAAAAGAAAGGGAGAATTTTGTGCCTTGTCACAATGTAACTGCTAATTTGTTGTCTGGATTTGAACAAGGGGAGGAGCTGGATCGGCACTGCCAAGTGTCAAGGGAAGGAGATCGGTGTTTGGTTCGTCCTCCTAAGGAATATAAAATTCCGTTACGTTGGCCTAGGGGTAGGGATATTATATGGAGTGGGAATGTGAAGATAACCAAAGATCAATTTCTTTCGTCTGGAAGTATGACCAAAAGGTTGATGCTACTAGAAGAGAATCAAATTGCCTTTCACTCACAGGATGGTTTGATCTTTGACGGTGTGAAAGATTACTCTCGCCAAATTGCGGAGATGATAGGGCTAGGAAGTGATACAGAGCTTCCTCAAGCTGGTGTTCGAACTATGCTGGACATTAATTGTGGGTTTGGTAGCTTTGGAGCTCATTTGTTGTCACTTAAAATAATGGCGGTTTGTGTAGCGGCATATGAGGCAACTGGCAGCCAAGTTCAATTGTCTCTTGAGAGAGGCCTTCCTGCTATGATTGGCAACTTCATTGCAAGACAGCTTCCATATCCATCATTATCATATGACATGGTTCACTGTGCTCAATGTGGCATCATTTGGGATGAAAAGGATGGAATGTTCCTCATAGAAGTTGACCGTGTTCTTAAACCTGGAGGATATTTTGTTTTAACATCACCTACGAGCAAGCTACAGGGTTCATCGCGGGAGAAAAAAAGTATCACGTTGAACCCAATGGAAGAGCATACCCAGCAACTCTGTTGGACGCTCCTAGCCCAGCAAGATGAGACTTTTATCTGGCAGAAGACTGCTGACCTGGACTGTTATGCATCTCGCAAGCAGCGTGCTATTCAACTATGTAAAGATGGGGATGAAACTCAATCATATTATCAGCCACTTGTACCATGTATAAGTGGGACGTCTAGCAAGCGCTGGATTGCAATACAAAACAGGTCCTTTGATTCTGAATTGAGTACAGCTGAGCTTGAAATTCATGGAAAGTATTATTTCTCAGAAGCTTTAAGCTTAAATCCTCTTCCTTCTCTGAAATTTCGAGTTCAGCCTGAAGAGTTTTATGAAGACATGCATTTCTGGAGATCAGCTGTAGATAATTATTGGTCACTGCTTACGCCACTAATTTTCTCTGACCATCCAAAGAGACCTGGAGATGAAGATCCACTGCCTCCATATAACATGATCCGGAATGTTATGGACATGAGTTCTAATTATGGGGGTTTGAATGCTGCATTGCTGGAGGAGAAAAAATCGGTGTGGGTCATGAATGTTGTTCCTGCCAGGGCTTATAATGCACTTCCTCTCATACTCGATAGAGGTTTTGCTGGTGTTATGCATGACTGGTGTGAACCTTTCCCCACCTACCCACGGACATATGATCTGCTTCATGCAAATGGACTTCTGTCACAATTCATTTCAGAACGCTGCAGCATGATAGACTTATTCTTGGAGATGGACAGGATACTACGACCAGAGGGATGGATCATTTTTTCCGATACAGTGGGAACGATTGAGATGGCTCGCACACTTGCAACTCAAGTACGTTGGGAAGCCAGGATAATTGATCTTCAGAATGGCAGTGACCAGCGGTTACTTGTTTGCCAGAAACTATTTTTGAAAAAATGA
Protein sequence

>Msa0692880

MRSSLWNKLWMIFGPKPKLNWLILSVISILAFITLFGSSSSNAIDSSPRRQASLIYTNYRRIKERVAVDYLELKSVSSGGLKQKELGLCGKERENFVPCHNVTANLLSGFEQGEELDRHCQVSREGDRCLVRPPKEYKIPLRWPRGRDIIWSGNVKITKDQFLSSGSMTKRLMLLEENQIAFHSQDGLIFDGVKDYSRQIAEMIGLGSDTELPQAGVRTMLDINCGFGSFGAHLLSLKIMAVCVAAYEATGSQVQLSLERGLPAMIGNFIARQLPYPSLSYDMVHCAQCGIIWDEKDGMFLIEVDRVLKPGGYFVLTSPTSKLQGSSREKKSITLNPMEEHTQQLCWTLLAQQDETFIWQKTADLDCYASRKQRAIQLCKDGDETQSYYQPLVPCISGTSSKRWIAIQNRSFDSELSTAELEIHGKYYFSEALSLNPLPSLKFRVQPEEFYEDMHFWRSAVDNYWSLLTPLIFSDHPKRPGDEDPLPPYNMIRNVMDMSSNYGGLNAALLEEKKSVWVMNVVPARAYNALPLILDRGFAGVMHDWCEPFPTYPRTYDLLHANGLLSQFISERCSMIDLFLEMDRILRPEGWIIFSDTVGTIEMARTLATQVRWEARIIDLQNGSDQRLLVCQKLFLKK*