AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0230370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0230370 MtrunA17_Chr2g0281781 96.296 891 32 1 1 891 1 890 0.0 1768
Msa0230370 MtrunA17_Chr2g0318031 35.570 894 441 30 1 853 1 800 9.99e-120 390
Msa0230370 MtrunA17_Chr1g0187491 38.809 554 248 24 1 509 1 508 1.09e-80 284
Msa0230370 MtrunA17_Chr1g0166471 33.022 536 273 17 1 503 1 483 1.50e-60 224
Msa0230370 MtrunA17_Chr8g0344661 34.234 222 125 4 1 220 1 203 2.61e-32 135
Msa0230370 MtrunA17_Chr3g0128441 26.941 219 123 3 7 219 11 198 1.38e-14 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0230370 AT1G61100.1 38.462 884 408 32 1 848 1 784 1.76e-146 453
Msa0230370 AT1G61100.2 38.655 877 415 32 1 848 1 783 1.94e-146 453
Msa0230370 AT4G27430.1 37.442 868 436 31 1 846 1 783 2.54e-124 402
Msa0230370 AT4G27430.2 37.442 868 436 31 1 846 1 783 2.54e-124 402
Msa0230370 AT5G43310.5 35.821 536 233 20 1 507 1 454 8.08e-71 254
Msa0230370 AT5G43310.4 35.821 536 233 20 1 507 1 454 9.27e-71 255
Msa0230370 AT5G43310.3 35.821 536 233 20 1 507 1 454 9.27e-71 255
Msa0230370 AT5G43310.2 35.821 536 233 20 1 507 1 454 1.42e-70 254
Msa0230370 AT3G14172.1 39.352 216 108 5 7 220 7 201 1.40e-34 143
Msa0230370 AT5G43310.1 31.956 363 151 16 159 507 231 511 7.40e-33 138
Msa0230370 AT5G43310.1 60.000 105 41 1 1 104 1 105 8.31e-30 128
Msa0230370 AT3G14172.2 37.383 214 107 5 7 220 7 193 6.64e-29 125
Msa0230370 AT1G17360.1 31.839 223 115 5 1 220 1 189 1.97e-27 120
Msa0230370 AT1G72410.1 31.839 223 122 5 1 220 1 196 5.41e-25 112
Msa0230370 AT1G72410.2 31.839 223 122 5 1 220 1 196 5.88e-25 112
Msa0230370 AT3G14172.3 35.260 173 89 5 50 220 12 163 5.65e-18 90.1

Find 167 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCATCCAACACTGCTTTC+TGG 0.103763 2_2:-2524891 Msa0230370:CDS
CATTTGGAGCATCGCGTTTA+AGG 0.193408 2_2:-2523823 Msa0230370:intron
GTTTATTGTTGATAACAATT+TGG 0.222809 2_2:-2521767 Msa0230370:CDS
AAAAGCATGCAGATGATCTT+TGG 0.249753 2_2:-2523163 Msa0230370:CDS
AGCTATTATTCTTGTTGTTC+TGG 0.250738 2_2:+2523042 None:intergenic
GATTTCGCTGCAACGTCTTT+TGG 0.254904 2_2:-2523954 Msa0230370:CDS
CTTTCCCTGATCTTTGTAAC+TGG 0.257701 2_2:+2521910 None:intergenic
GCATTAATTTCAAGGATTTA+TGG 0.262511 2_2:-2523190 Msa0230370:CDS
TCCGCAATTTCACGATTCTT+TGG 0.266625 2_2:+2522012 None:intergenic
TAACCTCTCAAAGGTGGATT+TGG 0.274750 2_2:+2524864 None:intergenic
TTTAACAGGAAGATGAAATT+AGG 0.285960 2_2:-2521076 Msa0230370:intron
GATTCCAGTGATCCTGATTC+AGG 0.296973 2_2:-2522561 Msa0230370:CDS
ATCATTTGATTTATTGTGTT+TGG 0.297241 2_2:+2522251 None:intergenic
CAAATACTATAGGCACATTT+GGG 0.300601 2_2:+2521722 None:intergenic
ATCACCAACCTTCTGTTTGA+TGG 0.301643 2_2:+2522338 None:intergenic
TCAAATACTATAGGCACATT+TGG 0.314149 2_2:+2521721 None:intergenic
ATCTTCTGATCCTCTTCCCT+TGG 0.314858 2_2:+2521792 None:intergenic
CAAATTGACTTTCAATCTGC+TGG 0.325945 2_2:+2524573 None:intergenic
GGCTTTCTGTTTCTAGAAAT+CGG 0.328726 2_2:+2521265 None:intergenic
CTAAAGGTGGATACTCTATT+AGG 0.346591 2_2:-2524921 Msa0230370:CDS
TCAATAGAAGCTCTTCTATC+AGG 0.350159 2_2:+2521391 None:intergenic
GATGCAATCGATTGATGTTC+AGG 0.360802 2_2:-2522118 Msa0230370:CDS
GATGATTCCTTCATGATTCA+AGG 0.363422 2_2:-2521643 Msa0230370:CDS
GTTCGTGAGAAAATAGCTTC+TGG 0.373823 2_2:-2524994 Msa0230370:CDS
AAGATAGATGCGGCGGAGAC+TGG 0.377811 2_2:-2522159 Msa0230370:CDS
TATTCTTGTTGTTCTGGTCA+TGG 0.378692 2_2:+2523048 None:intergenic
CTGTTTCTAGAAATCGGTTC+AGG 0.383139 2_2:+2521271 None:intergenic
ACTTCATTGAAATCCATGTT+TGG 0.387757 2_2:+2522036 None:intergenic
TCAACTACATCACTCCAAAA+AGG 0.388918 2_2:-2522431 Msa0230370:CDS
TCTTCTGATCCTCTTCCCTT+GGG 0.389676 2_2:+2521793 None:intergenic
CAGTTAAATGATGTACTTGA+AGG 0.393324 2_2:-2524116 Msa0230370:CDS
AGATGAAATTAGGAAGCAAT+TGG 0.394685 2_2:-2521066 Msa0230370:CDS
ATCGCACATGGAGTGTGAAC+TGG 0.394964 2_2:+2525367 None:intergenic
TGGATCATCAGGAATTATAC+TGG 0.395796 2_2:-2523087 Msa0230370:CDS
AAAACCATACAGAGGTCATT+TGG 0.405408 2_2:+2521490 None:intergenic
AGCATAATCAAGAATGGTCT+TGG 0.405937 2_2:+2525195 None:intergenic
AAAGCATGCAGATGATCTTT+GGG 0.406887 2_2:-2523162 Msa0230370:CDS
TACTTATATCTGTCTTCCAT+TGG 0.407496 2_2:+2521590 None:intergenic
TCAGATTCACTCCCTGAATC+AGG 0.407557 2_2:+2522549 None:intergenic
ATTCTTTGAAGGATGATAAG+AGG 0.416935 2_2:-2522500 Msa0230370:CDS
GGAAGCTTGCATTAATTTCA+AGG 0.419305 2_2:-2523198 Msa0230370:CDS
AGACTCAAACAATTCTTTGA+AGG 0.423072 2_2:-2522511 Msa0230370:CDS
TTTGAACCATAGGCTTTCTT+GGG 0.426257 2_2:+2521236 None:intergenic
ATTCTTGTTGTTCTGGTCAT+GGG 0.427532 2_2:+2523049 None:intergenic
TAGGAAGCAATTGGAAGAAA+AGG 0.431957 2_2:-2521057 Msa0230370:CDS
TATGAAGGCATTTGCTGACT+AGG 0.433103 2_2:+2522720 None:intergenic
ATATATGGCGGTACGTTGTA+AGG 0.434933 2_2:+2522759 None:intergenic
GTGTCCCAGTTACAAAGATC+AGG 0.436622 2_2:-2521915 Msa0230370:CDS
TATACACGTAGTCTTGTTGC+TGG 0.437080 2_2:-2523890 Msa0230370:CDS
AAACAGAAACAGTTCTGTTA+AGG 0.437731 2_2:-2520901 Msa0230370:CDS
TGTGTCGGTTTCTACCTTGT+TGG 0.440856 2_2:+2521546 None:intergenic
TTCGTGAGAAAATAGCTTCT+GGG 0.443859 2_2:-2524993 Msa0230370:CDS
GCGGCGGAGACTGGAATTGA+TGG 0.446148 2_2:-2522150 Msa0230370:CDS
ATGGAAGACAGATATAAGTA+TGG 0.447475 2_2:-2521587 Msa0230370:CDS
GAAAGATACCTTGTTCTAGT+TGG 0.448671 2_2:+2525157 None:intergenic
TTCCAAACCATACCTTCATC+CGG 0.449240 2_2:+2524518 None:intergenic
GCTGAAAGAACTGCATCTTC+CGG 0.450013 2_2:-2521011 Msa0230370:CDS
GTCGATGTCAGTTGCAATCC+CGG 0.451586 2_2:-2524537 Msa0230370:CDS
TCTACAGACAGTATTCCTTC+TGG 0.454903 2_2:-2523020 Msa0230370:CDS
GGTGTTGGTCGAACCGTGCC+TGG 0.456883 2_2:-2520990 Msa0230370:CDS
AGGGAAGAGGATCAGAAGAT+TGG 0.458212 2_2:-2521789 Msa0230370:CDS
GTTAAAGATGAGATCTCTAA+AGG 0.458836 2_2:-2524937 Msa0230370:CDS
AAGAATGGTCTTGGAATCCA+TGG 0.465531 2_2:+2525204 None:intergenic
ACTTATATCTGTCTTCCATT+GGG 0.465897 2_2:+2521591 None:intergenic
GGAAACTTGCCACACACAAA+TGG 0.468875 2_2:-2524252 Msa0230370:CDS
CATCTATCTTCAAAAGGCTC+TGG 0.470474 2_2:+2522172 None:intergenic
CTATCACCATCAAATACTAT+AGG 0.472793 2_2:+2521712 None:intergenic
TCAGCAGCATAAGTATTTAA+CGG 0.473822 2_2:+2521826 None:intergenic
TAGGCACATTTGGGGAATCA+TGG 0.474102 2_2:+2521731 None:intergenic
ATTGTGACTCAAAGAGATGA+AGG 0.481610 2_2:-2521979 Msa0230370:CDS
AATGTGCCTATAGTATTTGA+TGG 0.482716 2_2:-2521718 Msa0230370:CDS
GGAGGATATCCTTGGTATGA+AGG 0.485665 2_2:+2522705 None:intergenic
TCATTGCAGAAGGTCCATAA+AGG 0.485905 2_2:-2522306 Msa0230370:CDS
ATGAAGGAATCATCAATGAT+AGG 0.486228 2_2:+2521652 None:intergenic
AAATGAAAGAGGATCGAAGC+TGG 0.490065 2_2:-2521956 Msa0230370:CDS
ATAGGCTTTCTTGGGAGAGA+TGG 0.490460 2_2:+2521244 None:intergenic
GAAGGTAAGGAGGATATCCT+TGG 0.491685 2_2:+2522697 None:intergenic
ACCTTCAAAATAATATGCAT+TGG 0.495082 2_2:-2522680 Msa0230370:CDS
ACTCCCTGAATCAGGATCAC+TGG 0.498072 2_2:+2522557 None:intergenic
CCGCCGCATCTATCTTCAAA+AGG 0.498419 2_2:+2522166 None:intergenic
ATCTCTCCCAAGAAAGCCTA+TGG 0.499073 2_2:-2521242 Msa0230370:CDS
CTTCATCAATCTTCTACCCA+TGG 0.499203 2_2:-2525221 Msa0230370:exon
TTTGCAACGCGATTCAGGAT+TGG 0.499793 2_2:-2521470 Msa0230370:CDS
TCAAAAGAGCCAAAGGGAAA+AGG 0.504709 2_2:-2521218 Msa0230370:intron
GAATGCATTATCAAAGATAG+AGG 0.504852 2_2:-2521515 Msa0230370:CDS
AAACAGAGCATAATCAAGAA+TGG 0.522503 2_2:+2525189 None:intergenic
AGGAGAAATGGAAATGAGAG+TGG 0.523974 2_2:-2522411 Msa0230370:CDS
TATGCATTGGTCTTCTAACA+TGG 0.529226 2_2:-2522667 Msa0230370:CDS
TGAAAATAACCTCTCAAAGG+TGG 0.529543 2_2:+2524858 None:intergenic
AAAGTCAATTTCATAGTCCA+TGG 0.536400 2_2:+2521426 None:intergenic
AGAACTGCATCTTCCGGTGT+TGG 0.542823 2_2:-2521005 Msa0230370:CDS
TGAGTGATGTGTAGCGATAG+TGG 0.543074 2_2:+2525284 None:intergenic
GGAGAACCAGAAAGCAGTGT+TGG 0.543361 2_2:+2524885 None:intergenic
TCATCACAACCCAAGGGAAG+AGG 0.543533 2_2:-2521802 Msa0230370:CDS
ATTCCAGTGATCCTGATTCA+GGG 0.543913 2_2:-2522560 Msa0230370:CDS
GGCACTACTTCGAAAAGAGC+AGG 0.544910 2_2:-2523921 Msa0230370:CDS
TAAGGCCATGGCATATGCAT+TGG 0.545284 2_2:+2522777 None:intergenic
TTTCCCTGATCTTTGTAACT+GGG 0.548685 2_2:+2521911 None:intergenic
AACCAGAAAGCAGTGTTGGA+TGG 0.552261 2_2:+2524889 None:intergenic
TCGCACATGGAGTGTGAACT+GGG 0.553572 2_2:+2525368 None:intergenic
TGCTGATTCATCACAACCCA+AGG 0.554416 2_2:-2521809 Msa0230370:CDS
ACAAACCTCTCAAGAACTGC+AGG 0.555515 2_2:+2524614 None:intergenic
TGGATTCTGTTGAAGCCTCA+AGG 0.556644 2_2:-2521450 Msa0230370:CDS
TTCATAGTCCATGGTCCTTG+AGG 0.556923 2_2:+2521435 None:intergenic
TCCAAACCATACCTTCATCC+GGG 0.558364 2_2:+2524519 None:intergenic
AACAGTTCTGTTAAGGTCAG+AGG 0.558395 2_2:-2520894 Msa0230370:CDS
GGAGCCAAATGACCTCTGTA+TGG 0.559604 2_2:-2521494 Msa0230370:CDS
TCAGTTGCAATCCCGGATGA+AGG 0.560335 2_2:-2524530 Msa0230370:intron
GAGAAATCTCATCATAGGAA+AGG 0.561136 2_2:-2522612 Msa0230370:CDS
GCTGAGGAAGATGCATCTGA+TGG 0.561920 2_2:-2522225 Msa0230370:CDS
ATAATCTTTCTGATTCCCAA+TGG 0.561944 2_2:-2521606 Msa0230370:CDS
GGCGGTACGTTGTAAGGCCA+TGG 0.562859 2_2:+2522765 None:intergenic
AGAGATGAAGGAAATGAAAG+AGG 0.564503 2_2:-2521967 Msa0230370:CDS
CTTGTTGTTCTGGTCATGGG+CGG 0.570173 2_2:+2523052 None:intergenic
TGCTAGTTCTGCTCCAAACA+TGG 0.572416 2_2:-2522049 Msa0230370:CDS
AAGAAAGAAACAAAGACAGC+AGG 0.573481 2_2:+2525334 None:intergenic
AAACTGACCTTGAATCATGA+AGG 0.574019 2_2:+2521636 None:intergenic
TTTGCTATTTGATCTTTACC+AGG 0.575386 2_2:+2520972 None:intergenic
ATGTTAGCAAACACATCAAG+AGG 0.575991 2_2:-2521871 Msa0230370:CDS
TCCAAAGAATCGTGAAATTG+CGG 0.580291 2_2:-2522013 Msa0230370:CDS
AGGAAGATGCATCTGATGGA+GGG 0.584311 2_2:-2522221 Msa0230370:CDS
GCACACCTGCAGTTCTTGAG+AGG 0.584907 2_2:-2524619 Msa0230370:CDS
CTTGCGTTTCCATTTGTGTG+TGG 0.585414 2_2:+2524243 None:intergenic
ACAAAGATCAGGGAAAGTAT+TGG 0.586644 2_2:-2521904 Msa0230370:CDS
TAAATCAAATGATGCTGCTG+AGG 0.589260 2_2:-2522241 Msa0230370:CDS
CTATGGTTCAAAAGAGCCAA+AGG 0.589709 2_2:-2521225 Msa0230370:CDS
TATTTGATCTTTACCAGGCA+CGG 0.589815 2_2:+2520977 None:intergenic
GAAACCATCAAACAGAAGGT+TGG 0.595462 2_2:-2522342 Msa0230370:CDS
TATTGAAAATAACCTCTCAA+AGG 0.602974 2_2:+2524855 None:intergenic
TGTTGAAGCCTCAAGGACCA+TGG 0.604282 2_2:-2521443 Msa0230370:CDS
TCTCCAAATCCACCTTTGAG+AGG 0.606329 2_2:-2524867 Msa0230370:intron
AGGAGTTGACACTAAAGAAG+AGG 0.608965 2_2:-2524096 Msa0230370:CDS
CAGCAAATGCCTTCATACCA+AGG 0.609523 2_2:-2522714 Msa0230370:CDS
TATGGTTCAAAAGAGCCAAA+GGG 0.610400 2_2:-2521224 Msa0230370:CDS
CAGAAAGCAGTGTTGGATGG+AGG 0.610749 2_2:+2524892 None:intergenic
TGAAGAAACCATCAAACAGA+AGG 0.612922 2_2:-2522346 Msa0230370:CDS
GAGGTTAAGTGATTCTGCAA+AGG 0.615197 2_2:-2524220 Msa0230370:intron
TAGGCCATGGTGAATCTACA+AGG 0.615491 2_2:-2520801 Msa0230370:three_prime_UTR
TGCACTTGAATCATTGCAGA+AGG 0.618725 2_2:-2522316 Msa0230370:CDS
GCAATTGGAAGAAAAGGCGA+TGG 0.619942 2_2:-2521051 Msa0230370:CDS
TTTGTGTTGAGAAACTCTGA+AGG 0.622804 2_2:-2522087 Msa0230370:CDS
ACTTCGAAAAGAGCAGGCAA+TGG 0.623572 2_2:-2523915 Msa0230370:CDS
ATGCATTGGTCTTCTAACAT+GGG 0.624478 2_2:-2522666 Msa0230370:CDS
GAGGAAGATGCATCTGATGG+AGG 0.626415 2_2:-2522222 Msa0230370:CDS
GATCCAGAAAATGAGAGTGC+TGG 0.627508 2_2:+2523104 None:intergenic
TGTCCCAGTTACAAAGATCA+GGG 0.630317 2_2:-2521914 Msa0230370:CDS
ATATGCCAATGCATATGCCA+TGG 0.630372 2_2:-2522782 Msa0230370:CDS
AAAAGGCGATGGAACGACAG+AGG 0.633665 2_2:-2521040 Msa0230370:CDS
AGATGTGAACTTATCGCACA+TGG 0.643303 2_2:-2522814 Msa0230370:CDS
TGAAGATTATACATATATGG+CGG 0.644615 2_2:+2522747 None:intergenic
GGAATATGAAGAATCGCACA+TGG 0.648565 2_2:+2525355 None:intergenic
CACACACAAATGGAAACGCA+AGG 0.652976 2_2:-2524242 Msa0230370:CDS
AGGCACGGTTCGACCAACAC+CGG 0.654070 2_2:+2520992 None:intergenic
AAAGATGAGATCTCTAAAGG+TGG 0.655907 2_2:-2524934 Msa0230370:CDS
TAGTGTCATTCAATTCAATG+TGG 0.657845 2_2:-2520848 Msa0230370:three_prime_UTR
TTTACCTTGTAGATTCACCA+TGG 0.665569 2_2:+2520797 None:intergenic
AAATACTATAGGCACATTTG+GGG 0.667223 2_2:+2521723 None:intergenic
AGAATGGTCTTGGAATCCAT+GGG 0.669793 2_2:+2525205 None:intergenic
AACTCACACCAACTAGAACA+AGG 0.673174 2_2:-2525165 Msa0230370:intron
AATTTGAGATGAGAAATGAA+AGG 0.677579 2_2:+2524961 None:intergenic
GATTGCAACTGACATCGACA+AGG 0.686620 2_2:+2524541 None:intergenic
AGATCTAACATCTTCCAACA+AGG 0.687176 2_2:-2521560 Msa0230370:CDS
CGCGTTGCAAAACCATACAG+AGG 0.690263 2_2:+2521482 None:intergenic
AGATTGATGAAGAACAACGT+TGG 0.694386 2_2:+2525232 None:intergenic
GCTGATTCATCACAACCCAA+GGG 0.696947 2_2:-2521808 Msa0230370:CDS
CCAGAAAATGAGAGTGCTGG+TGG 0.704940 2_2:+2523107 None:intergenic
ACACAAATGGAAACGCAAGG+AGG 0.763676 2_2:-2524239 Msa0230370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCAATTCTTTTTTTTTTA+TGG + chr2_2:2521519-2521538 None:intergenic 10.0%
!!! TTTTGTATAAATAAACTTTT+AGG - chr2_2:2525203-2525222 Msa0230370:CDS 10.0%
!! ATAAGAGAATATAACAAAAT+GGG + chr2_2:2520803-2520822 None:intergenic 15.0%
!! AATAAGAGAATATAACAAAA+TGG + chr2_2:2520804-2520823 None:intergenic 15.0%
!!! TTTTTCACAATTTACTTATT+GGG - chr2_2:2520852-2520871 Msa0230370:three_prime_UTR 15.0%
!!! ACTTTTTTGATTTAATCTTT+TGG - chr2_2:2521102-2521121 Msa0230370:intron 15.0%
!!! AATTGTGTTTTTTATGTTAA+AGG - chr2_2:2522229-2522248 Msa0230370:CDS 15.0%
!!! TTTTGAAGATTATACATATA+TGG + chr2_2:2523187-2523206 None:intergenic 15.0%
!!! GTATTGTGAATTTTTTATTA+TGG - chr2_2:2524732-2524751 Msa0230370:intron 15.0%
!!! CTTTTTCACAATTTACTTAT+TGG - chr2_2:2520851-2520870 Msa0230370:three_prime_UTR 20.0%
!! CAATCATATAATTGAATCAA+TGG + chr2_2:2521179-2521198 None:intergenic 20.0%
!!! GACTTATTTAAGTTGTTTTA+TGG - chr2_2:2521198-2521217 Msa0230370:intron 20.0%
!!! TTATGCAAAATATGTGTTTT+TGG - chr2_2:2521230-2521249 Msa0230370:CDS 20.0%
!!! TATGCAAAATATGTGTTTTT+GGG - chr2_2:2521231-2521250 Msa0230370:CDS 20.0%
!!! CAATTGATTAGGTTTATTTT+AGG - chr2_2:2521470-2521489 Msa0230370:CDS 20.0%
!!! CTTTTTTTTTTATGGAATCA+AGG + chr2_2:2521511-2521530 None:intergenic 20.0%
!!! ACATAGATTCATTGATTTAT+AGG + chr2_2:2521573-2521592 None:intergenic 20.0%
!! TGAATTCAATATATGTTGAT+TGG - chr2_2:2522630-2522649 Msa0230370:CDS 20.0%
!! TTGAAACTAATTCTAAATCT+TGG - chr2_2:2522691-2522710 Msa0230370:CDS 20.0%
!! TTTGTAGAAAACAAAAAAGA+CGG - chr2_2:2522944-2522963 Msa0230370:intron 20.0%
!! TACAATTAAGGTAAAAGAAA+AGG + chr2_2:2522989-2523008 None:intergenic 20.0%
!! AAAAAATCAAAGATTTGACT+TGG + chr2_2:2523048-2523067 None:intergenic 20.0%
!!! ATCATTTGATTTATTGTGTT+TGG + chr2_2:2523680-2523699 None:intergenic 20.0%
!!! GTTTATTGTTGATAACAATT+TGG - chr2_2:2524161-2524180 Msa0230370:intron 20.0%
!!! TCTATTTTGAGTAACTATAT+AGG + chr2_2:2525249-2525268 None:intergenic 20.0%
!! AATTTGAGATGAGAAATGAA+AGG + chr2_2:2520970-2520989 None:intergenic 25.0%
! TATTGAAAATAACCTCTCAA+AGG + chr2_2:2521076-2521095 None:intergenic 25.0%
!!! GTTTTTTTGATAGATTTGTG+CGG - chr2_2:2521279-2521298 Msa0230370:CDS 25.0%
!! TGTTTCTGTATCAATTGATT+AGG - chr2_2:2521459-2521478 Msa0230370:CDS 25.0%
!! TAAATTTTCCATTGTGTATC+AGG - chr2_2:2521655-2521674 Msa0230370:CDS 25.0%
! AATAATCAATAGAGATCAGT+AGG + chr2_2:2521764-2521783 None:intergenic 25.0%
! ATTCAATTGCTGTAATGTTA+AGG - chr2_2:2521952-2521971 Msa0230370:CDS 25.0%
!! GTATATTTTGCAAATGCATT+TGG - chr2_2:2522089-2522108 Msa0230370:CDS 25.0%
! CTTATATGGATACTGTAAAT+TGG - chr2_2:2522158-2522177 Msa0230370:CDS 25.0%
!! CTTTTATGTCTGAAAAGAAA+GGG + chr2_2:2522326-2522345 None:intergenic 25.0%
!! ACTTTTATGTCTGAAAAGAA+AGG + chr2_2:2522327-2522346 None:intergenic 25.0%
! AATTTCACAATCTACAAAGT+AGG + chr2_2:2522366-2522385 None:intergenic 25.0%
! TGTGAAATTTCACTTATCTA+AGG - chr2_2:2522377-2522396 Msa0230370:CDS 25.0%
! GTGAAATTTCACTTATCTAA+GGG - chr2_2:2522378-2522397 Msa0230370:CDS 25.0%
! TGAAATTTCACTTATCTAAG+GGG - chr2_2:2522379-2522398 Msa0230370:CDS 25.0%
! AAATTTCACCCTAATCTAAT+AGG + chr2_2:2522562-2522581 None:intergenic 25.0%
!! ATTCAATATATGTTGATTGG+TGG - chr2_2:2522633-2522652 Msa0230370:CDS 25.0%
! GCATTAATTTCAAGGATTTA+TGG - chr2_2:2522738-2522757 Msa0230370:CDS 25.0%
! CAGACTTCATAATACAATTA+AGG + chr2_2:2523001-2523020 None:intergenic 25.0%
!! TTTTTATAGATTGCACACAA+TGG - chr2_2:2523063-2523082 Msa0230370:CDS 25.0%
! TGAAGATTATACATATATGG+CGG + chr2_2:2523184-2523203 None:intergenic 25.0%
!!! ATATTATTTTGAAGGTAAGG+AGG + chr2_2:2523244-2523263 None:intergenic 25.0%
!!! TGCATATTATTTTGAAGGTA+AGG + chr2_2:2523247-2523266 None:intergenic 25.0%
! ACCTTCAAAATAATATGCAT+TGG - chr2_2:2523248-2523267 Msa0230370:intron 25.0%
!!! ACCAATGCATATTATTTTGA+AGG + chr2_2:2523252-2523271 None:intergenic 25.0%
! AAAAAGAGAAATCTCATCAT+AGG - chr2_2:2523311-2523330 Msa0230370:intron 25.0%
! ATAAGAGGAAAAAAAACAGA+AGG - chr2_2:2523443-2523462 Msa0230370:intron 25.0%
! TTTAACAGGAAGATGAAATT+AGG - chr2_2:2524852-2524871 Msa0230370:intron 25.0%
! AGGAATTTAGAAAAACTTGT+CGG - chr2_2:2525054-2525073 Msa0230370:intron 25.0%
! TCATAAAAACAAAGCAACAA+AGG + chr2_2:2525346-2525365 None:intergenic 25.0%
AAACAGAGCATAATCAAGAA+TGG + chr2_2:2520742-2520761 None:intergenic 30.0%
! ATTTTGCAGATTTGAGCTTT+TGG - chr2_2:2520897-2520916 Msa0230370:CDS 30.0%
!!! TTTGAGCTTTTGGTGTTTAA+TGG - chr2_2:2520907-2520926 Msa0230370:CDS 30.0%
GTTAAAGATGAGATCTCTAA+AGG - chr2_2:2520991-2521010 Msa0230370:CDS 30.0%
CAGTTAAATGATGTACTTGA+AGG - chr2_2:2521812-2521831 Msa0230370:CDS 30.0%
TAATGAACCAGTCAAACAAA+GGG + chr2_2:2521915-2521934 None:intergenic 30.0%
TTACAGCAATTGAATGTGTT+AGG + chr2_2:2521947-2521966 None:intergenic 30.0%
ACAACCTACAAGTTCTTATA+TGG - chr2_2:2522144-2522163 Msa0230370:CDS 30.0%
GTATCCATATAAGAACTTGT+AGG + chr2_2:2522151-2522170 None:intergenic 30.0%
AGAGAACTAACATCAAAAGT+TGG + chr2_2:2522418-2522437 None:intergenic 30.0%
TACTAAAAATTCGCACGAAA+AGG + chr2_2:2522472-2522491 None:intergenic 30.0%
TTAGTTTCAAACTCTACTGA+AGG + chr2_2:2522681-2522700 None:intergenic 30.0%
TCTTGGTATTCAATGTATGT+AGG - chr2_2:2522708-2522727 Msa0230370:CDS 30.0%
CTTGGTATTCAATGTATGTA+GGG - chr2_2:2522709-2522728 Msa0230370:CDS 30.0%
!! AGCTATTATTCTTGTTGTTC+TGG + chr2_2:2522889-2522908 None:intergenic 30.0%
AGACTCAAACAATTCTTTGA+AGG - chr2_2:2523417-2523436 Msa0230370:intron 30.0%
! ATTCTTTGAAGGATGATAAG+AGG - chr2_2:2523428-2523447 Msa0230370:intron 30.0%
AAAAACAGAAGGAAATCATC+TGG - chr2_2:2523454-2523473 Msa0230370:intron 30.0%
! TCATTTCCATTTCTCCTTTT+TGG + chr2_2:2523514-2523533 None:intergenic 30.0%
ACTTCATTGAAATCCATGTT+TGG + chr2_2:2523895-2523914 None:intergenic 30.0%
! GGATCATCAAGTTCAATTTT+TGG + chr2_2:2524084-2524103 None:intergenic 30.0%
TCAGCAGCATAAGTATTTAA+CGG + chr2_2:2524105-2524124 None:intergenic 30.0%
AAATACTATAGGCACATTTG+GGG + chr2_2:2524208-2524227 None:intergenic 30.0%
CAAATACTATAGGCACATTT+GGG + chr2_2:2524209-2524228 None:intergenic 30.0%
TCAAATACTATAGGCACATT+TGG + chr2_2:2524210-2524229 None:intergenic 30.0%
AATGTGCCTATAGTATTTGA+TGG - chr2_2:2524210-2524229 Msa0230370:intron 30.0%
CTATCACCATCAAATACTAT+AGG + chr2_2:2524219-2524238 None:intergenic 30.0%
ATGAAGGAATCATCAATGAT+AGG + chr2_2:2524279-2524298 None:intergenic 30.0%
ATAATCTTTCTGATTCCCAA+TGG - chr2_2:2524322-2524341 Msa0230370:intron 30.0%
ACTTATATCTGTCTTCCATT+GGG + chr2_2:2524340-2524359 None:intergenic 30.0%
TACTTATATCTGTCTTCCAT+TGG + chr2_2:2524341-2524360 None:intergenic 30.0%
ATGGAAGACAGATATAAGTA+TGG - chr2_2:2524341-2524360 Msa0230370:intron 30.0%
! TGCATTCTTTTCTTTTGTGT+CGG + chr2_2:2524400-2524419 None:intergenic 30.0%
GAATGCATTATCAAAGATAG+AGG - chr2_2:2524413-2524432 Msa0230370:intron 30.0%
AAAGTCAATTTCATAGTCCA+TGG + chr2_2:2524505-2524524 None:intergenic 30.0%
!! ATTTATGTGTGCTGTTTAAC+AGG - chr2_2:2524838-2524857 Msa0230370:intron 30.0%
AGATGAAATTAGGAAGCAAT+TGG - chr2_2:2524862-2524881 Msa0230370:intron 30.0%
!! TTTGCTATTTGATCTTTACC+AGG + chr2_2:2524959-2524978 None:intergenic 30.0%
AAACAGAAACAGTTCTGTTA+AGG - chr2_2:2525027-2525046 Msa0230370:intron 30.0%
! TAGTGTCATTCAATTCAATG+TGG - chr2_2:2525080-2525099 Msa0230370:intron 30.0%
! ATGCAGCTTTTATAAGGTAT+AGG - chr2_2:2525108-2525127 Msa0230370:intron 30.0%
AAGAAAGAAACAAAGACAGC+AGG + chr2_2:2520597-2520616 None:intergenic 35.0%
AGATTGATGAAGAACAACGT+TGG + chr2_2:2520699-2520718 None:intergenic 35.0%
AGCATAATCAAGAATGGTCT+TGG + chr2_2:2520736-2520755 None:intergenic 35.0%
GAAAGATACCTTGTTCTAGT+TGG + chr2_2:2520774-2520793 None:intergenic 35.0%
TTCGTGAGAAAATAGCTTCT+GGG - chr2_2:2520935-2520954 Msa0230370:CDS 35.0%
! AAAGATGAGATCTCTAAAGG+TGG - chr2_2:2520994-2521013 Msa0230370:CDS 35.0%
CTAAAGGTGGATACTCTATT+AGG - chr2_2:2521007-2521026 Msa0230370:CDS 35.0%
TGAAAATAACCTCTCAAAGG+TGG + chr2_2:2521073-2521092 None:intergenic 35.0%
!! TCTGCTGGATTTCTTTTTCA+AGG + chr2_2:2521343-2521362 None:intergenic 35.0%
! CAAATTGACTTTCAATCTGC+TGG + chr2_2:2521358-2521377 None:intergenic 35.0%
! GTAGAAAACTAGCTTCACTT+AGG + chr2_2:2521635-2521654 None:intergenic 35.0%
CTAATGAACCAGTCAAACAA+AGG + chr2_2:2521916-2521935 None:intergenic 35.0%
! CTTTGTTTGACTGGTTCATT+AGG - chr2_2:2521914-2521933 Msa0230370:CDS 35.0%
GCCTCAGTTCTTACTAAATA+TGG - chr2_2:2522187-2522206 Msa0230370:CDS 35.0%
GCCATATTTAGTAAGAACTG+AGG + chr2_2:2522191-2522210 None:intergenic 35.0%
!! AAAAAGTGCTCTCTAGAAAC+TGG + chr2_2:2522287-2522306 None:intergenic 35.0%
ATGTCTGAAAAGAAAGGGAA+AGG + chr2_2:2522321-2522340 None:intergenic 35.0%
TTTCACTTATCTAAGGGGAT+TGG - chr2_2:2522384-2522403 Msa0230370:CDS 35.0%
ATGTGTGTGCCTATTAGATT+AGG - chr2_2:2522550-2522569 Msa0230370:CDS 35.0%
TGTGTGTGCCTATTAGATTA+GGG - chr2_2:2522551-2522570 Msa0230370:CDS 35.0%
GGAAGCTTGCATTAATTTCA+AGG - chr2_2:2522730-2522749 Msa0230370:CDS 35.0%
! AAAAGCATGCAGATGATCTT+TGG - chr2_2:2522765-2522784 Msa0230370:CDS 35.0%
AAAGCATGCAGATGATCTTT+GGG - chr2_2:2522766-2522785 Msa0230370:CDS 35.0%
TGGATCATCAGGAATTATAC+TGG - chr2_2:2522841-2522860 Msa0230370:intron 35.0%
!! ATTCTTGTTGTTCTGGTCAT+GGG + chr2_2:2522882-2522901 None:intergenic 35.0%
!! TATTCTTGTTGTTCTGGTCA+TGG + chr2_2:2522883-2522902 None:intergenic 35.0%
!! TATGCATTGGTCTTCTAACA+TGG - chr2_2:2523261-2523280 Msa0230370:intron 35.0%
!! ATGCATTGGTCTTCTAACAT+GGG - chr2_2:2523262-2523281 Msa0230370:intron 35.0%
!!! TTCTCTTTTTTAGTTGCTCG+TGG + chr2_2:2523301-2523320 None:intergenic 35.0%
GAGAAATCTCATCATAGGAA+AGG - chr2_2:2523316-2523335 Msa0230370:intron 35.0%
TCAACTACATCACTCCAAAA+AGG - chr2_2:2523497-2523516 Msa0230370:intron 35.0%
ATCACTCCAAAAAGGAGAAA+TGG - chr2_2:2523505-2523524 Msa0230370:intron 35.0%
TGAAGAAACCATCAAACAGA+AGG - chr2_2:2523582-2523601 Msa0230370:intron 35.0%
TAAATCAAATGATGCTGCTG+AGG - chr2_2:2523687-2523706 Msa0230370:intron 35.0%
TTTGTGTTGAGAAACTCTGA+AGG - chr2_2:2523841-2523860 Msa0230370:CDS 35.0%
TCCAAAGAATCGTGAAATTG+CGG - chr2_2:2523915-2523934 Msa0230370:CDS 35.0%
ATTGTGACTCAAAGAGATGA+AGG - chr2_2:2523949-2523968 Msa0230370:CDS 35.0%
AGAGATGAAGGAAATGAAAG+AGG - chr2_2:2523961-2523980 Msa0230370:intron 35.0%
TTTCCCTGATCTTTGTAACT+GGG + chr2_2:2524020-2524039 None:intergenic 35.0%
! ACAAAGATCAGGGAAAGTAT+TGG - chr2_2:2524024-2524043 Msa0230370:intron 35.0%
ATGTTAGCAAACACATCAAG+AGG - chr2_2:2524057-2524076 Msa0230370:intron 35.0%
GATGATTCCTTCATGATTCA+AGG - chr2_2:2524285-2524304 Msa0230370:intron 35.0%
AAACTGACCTTGAATCATGA+AGG + chr2_2:2524295-2524314 None:intergenic 35.0%
AGATCTAACATCTTCCAACA+AGG - chr2_2:2524368-2524387 Msa0230370:intron 35.0%
AAAACCATACAGAGGTCATT+TGG + chr2_2:2524441-2524460 None:intergenic 35.0%
TCAATAGAAGCTCTTCTATC+AGG + chr2_2:2524540-2524559 None:intergenic 35.0%
!! GGCTTTCTGTTTCTAGAAAT+CGG + chr2_2:2524666-2524685 None:intergenic 35.0%
TTTGAACCATAGGCTTTCTT+GGG + chr2_2:2524695-2524714 None:intergenic 35.0%
! TTTTGAACCATAGGCTTTCT+TGG + chr2_2:2524696-2524715 None:intergenic 35.0%
TATGGTTCAAAAGAGCCAAA+GGG - chr2_2:2524704-2524723 Msa0230370:intron 35.0%
! TTCACAATACCTTTTCCCTT+TGG + chr2_2:2524722-2524741 None:intergenic 35.0%
TAGGAAGCAATTGGAAGAAA+AGG - chr2_2:2524871-2524890 Msa0230370:CDS 35.0%
TATTTGATCTTTACCAGGCA+CGG + chr2_2:2524954-2524973 None:intergenic 35.0%
! GATGCAATGCAGCTTTTATA+AGG - chr2_2:2525102-2525121 Msa0230370:intron 35.0%
! CTTTTATAAGGTATAGGCCA+TGG - chr2_2:2525114-2525133 Msa0230370:intron 35.0%
TTTACCTTGTAGATTCACCA+TGG + chr2_2:2525134-2525153 None:intergenic 35.0%
GGAATATGAAGAATCGCACA+TGG + chr2_2:2520576-2520595 None:intergenic 40.0%
CTTCATCAATCTTCTACCCA+TGG - chr2_2:2520707-2520726 Msa0230370:three_prime_UTR 40.0%
! AGAATGGTCTTGGAATCCAT+GGG + chr2_2:2520726-2520745 None:intergenic 40.0%
! AAGAATGGTCTTGGAATCCA+TGG + chr2_2:2520727-2520746 None:intergenic 40.0%
AACTCACACCAACTAGAACA+AGG - chr2_2:2520763-2520782 Msa0230370:three_prime_UTR 40.0%
GTTCGTGAGAAAATAGCTTC+TGG - chr2_2:2520934-2520953 Msa0230370:CDS 40.0%
! TAACCTCTCAAAGGTGGATT+TGG + chr2_2:2521067-2521086 None:intergenic 40.0%
TTCCAAACCATACCTTCATC+CGG + chr2_2:2521413-2521432 None:intergenic 40.0%
CACTTAGGCATCTCATGATT+AGG + chr2_2:2521620-2521639 None:intergenic 40.0%
GCAAGTTTCCTGATACACAA+TGG + chr2_2:2521666-2521685 None:intergenic 40.0%
GAGGTTAAGTGATTCTGCAA+AGG - chr2_2:2521708-2521727 Msa0230370:CDS 40.0%
AGGAGTTGACACTAAAGAAG+AGG - chr2_2:2521832-2521851 Msa0230370:CDS 40.0%
! CTAATCTCCCTTTGTTTGAC+TGG - chr2_2:2521905-2521924 Msa0230370:CDS 40.0%
!! TATACACGTAGTCTTGTTGC+TGG - chr2_2:2522038-2522057 Msa0230370:CDS 40.0%
! ATCGCGTTTAAGGTATGAAC+TGG - chr2_2:2522115-2522134 Msa0230370:CDS 40.0%
TCTCATTCCTTGCGAATCTA+AGG - chr2_2:2522435-2522454 Msa0230370:CDS 40.0%
CAGTTATCCTTAGATTCGCA+AGG + chr2_2:2522445-2522464 None:intergenic 40.0%
ACTCTACTGAAGGTTTCATC+TGG + chr2_2:2522671-2522690 None:intergenic 40.0%
! CTCTCATTTTCTGGATCATC+AGG - chr2_2:2522830-2522849 Msa0230370:intron 40.0%
TCTACAGACAGTATTCCTTC+TGG - chr2_2:2522908-2522927 Msa0230370:intron 40.0%
AGATGTGAACTTATCGCACA+TGG - chr2_2:2523114-2523133 Msa0230370:CDS 40.0%
ATATGCCAATGCATATGCCA+TGG - chr2_2:2523146-2523165 Msa0230370:CDS 40.0%
ATATATGGCGGTACGTTGTA+AGG + chr2_2:2523172-2523191 None:intergenic 40.0%
!! TATGAAGGCATTTGCTGACT+AGG + chr2_2:2523211-2523230 None:intergenic 40.0%
ATTCCAGTGATCCTGATTCA+GGG - chr2_2:2523368-2523387 Msa0230370:intron 40.0%
AGGAGAAATGGAAATGAGAG+TGG - chr2_2:2523517-2523536 Msa0230370:intron 40.0%
GAAACCATCAAACAGAAGGT+TGG - chr2_2:2523586-2523605 Msa0230370:intron 40.0%
ATCACCAACCTTCTGTTTGA+TGG + chr2_2:2523593-2523612 None:intergenic 40.0%
TGCACTTGAATCATTGCAGA+AGG - chr2_2:2523612-2523631 Msa0230370:intron 40.0%
TCATTGCAGAAGGTCCATAA+AGG - chr2_2:2523622-2523641 Msa0230370:intron 40.0%
GTCCATAAAGGTGAAAAACG+TGG - chr2_2:2523634-2523653 Msa0230370:intron 40.0%
! TGCCACGTTTTTCACCTTTA+TGG + chr2_2:2523639-2523658 None:intergenic 40.0%
GAGGGAACAAAAATGAGAAC+TGG - chr2_2:2523725-2523744 Msa0230370:intron 40.0%
CATCTATCTTCAAAAGGCTC+TGG + chr2_2:2523759-2523778 None:intergenic 40.0%
!! GAGCCTTTTGAAGATAGATG+CGG - chr2_2:2523759-2523778 Msa0230370:intron 40.0%
GATGCAATCGATTGATGTTC+AGG - chr2_2:2523810-2523829 Msa0230370:intron 40.0%
TCCGCAATTTCACGATTCTT+TGG + chr2_2:2523919-2523938 None:intergenic 40.0%
AAATGAAAGAGGATCGAAGC+TGG - chr2_2:2523972-2523991 Msa0230370:intron 40.0%
TGTCCCAGTTACAAAGATCA+GGG - chr2_2:2524014-2524033 Msa0230370:intron 40.0%
CTTTCCCTGATCTTTGTAAC+TGG + chr2_2:2524021-2524040 None:intergenic 40.0%
!! CTGTTTCTAGAAATCGGTTC+AGG + chr2_2:2524660-2524679 None:intergenic 40.0%
!!! CTTTGGCTCTTTTGAACCAT+AGG + chr2_2:2524705-2524724 None:intergenic 40.0%
CTATGGTTCAAAAGAGCCAA+AGG - chr2_2:2524703-2524722 Msa0230370:intron 40.0%
TCAAAAGAGCCAAAGGGAAA+AGG - chr2_2:2524710-2524729 Msa0230370:intron 40.0%
AACAGTTCTGTTAAGGTCAG+AGG - chr2_2:2525034-2525053 Msa0230370:intron 40.0%
TGAGTGATGTGTAGCGATAG+TGG + chr2_2:2520647-2520666 None:intergenic 45.0%
! AACCAGAAAGCAGTGTTGGA+TGG + chr2_2:2521042-2521061 None:intergenic 45.0%
TCTCCAAATCCACCTTTGAG+AGG - chr2_2:2521061-2521080 Msa0230370:CDS 45.0%
ACAAACCTCTCAAGAACTGC+AGG + chr2_2:2521317-2521336 None:intergenic 45.0%
GATTGCAACTGACATCGACA+AGG + chr2_2:2521390-2521409 None:intergenic 45.0%
TCCAAACCATACCTTCATCC+GGG + chr2_2:2521412-2521431 None:intergenic 45.0%
GGCATCTCATGATTAGGTGA+TGG + chr2_2:2521614-2521633 None:intergenic 45.0%
GGAAACTTGCCACACACAAA+TGG - chr2_2:2521676-2521695 Msa0230370:CDS 45.0%
CTTGCGTTTCCATTTGTGTG+TGG + chr2_2:2521688-2521707 None:intergenic 45.0%
CACACACAAATGGAAACGCA+AGG - chr2_2:2521686-2521705 Msa0230370:CDS 45.0%
ACACAAATGGAAACGCAAGG+AGG - chr2_2:2521689-2521708 Msa0230370:CDS 45.0%
! GATTTCGCTGCAACGTCTTT+TGG - chr2_2:2521974-2521993 Msa0230370:CDS 45.0%
!!! ACGTCTTTTGGAGTCTCGAA+TGG - chr2_2:2521986-2522005 Msa0230370:CDS 45.0%
ACTTCGAAAAGAGCAGGCAA+TGG - chr2_2:2522013-2522032 Msa0230370:CDS 45.0%
!! CATTTGGAGCATCGCGTTTA+AGG - chr2_2:2522105-2522124 Msa0230370:CDS 45.0%
CACTTATCTAAGGGGATTGG+AGG - chr2_2:2522387-2522406 Msa0230370:CDS 45.0%
TCTGAATGTCATCCTGCACA+CGG - chr2_2:2522502-2522521 Msa0230370:CDS 45.0%
CATTAAAATGCACCGTGTGC+AGG + chr2_2:2522517-2522536 None:intergenic 45.0%
CTGAAGGTTTCATCTGGTAG+AGG + chr2_2:2522665-2522684 None:intergenic 45.0%
! GATCCAGAAAATGAGAGTGC+TGG + chr2_2:2522827-2522846 None:intergenic 45.0%
! AATGCATTTTCGTCGCCAGA+AGG + chr2_2:2522926-2522945 None:intergenic 45.0%
TAAGGCCATGGCATATGCAT+TGG + chr2_2:2523154-2523173 None:intergenic 45.0%
CAGCAAATGCCTTCATACCA+AGG - chr2_2:2523214-2523233 Msa0230370:intron 45.0%
GGAGGATATCCTTGGTATGA+AGG + chr2_2:2523226-2523245 None:intergenic 45.0%
GAAGGTAAGGAGGATATCCT+TGG + chr2_2:2523234-2523253 None:intergenic 45.0%
GATTCCAGTGATCCTGATTC+AGG - chr2_2:2523367-2523386 Msa0230370:intron 45.0%
TCAGATTCACTCCCTGAATC+AGG + chr2_2:2523382-2523401 None:intergenic 45.0%
AGGAAGATGCATCTGATGGA+GGG - chr2_2:2523707-2523726 Msa0230370:intron 45.0%
!! CCTTTTGAAGATAGATGCGG+CGG - chr2_2:2523762-2523781 Msa0230370:intron 45.0%
!! TGCTAGTTCTGCTCCAAACA+TGG - chr2_2:2523879-2523898 Msa0230370:CDS 45.0%
GTGTCCCAGTTACAAAGATC+AGG - chr2_2:2524013-2524032 Msa0230370:intron 45.0%
!! TGCTGATTCATCACAACCCA+AGG - chr2_2:2524119-2524138 Msa0230370:intron 45.0%
! GCTGATTCATCACAACCCAA+GGG - chr2_2:2524120-2524139 Msa0230370:intron 45.0%
TCTTCTGATCCTCTTCCCTT+GGG + chr2_2:2524138-2524157 None:intergenic 45.0%
ATCTTCTGATCCTCTTCCCT+TGG + chr2_2:2524139-2524158 None:intergenic 45.0%
AGGGAAGAGGATCAGAAGAT+TGG - chr2_2:2524139-2524158 Msa0230370:intron 45.0%
TAGGCACATTTGGGGAATCA+TGG + chr2_2:2524200-2524219 None:intergenic 45.0%
!! TGTGTCGGTTTCTACCTTGT+TGG + chr2_2:2524385-2524404 None:intergenic 45.0%
!! ATGGTTTTGCAACGCGATTC+AGG - chr2_2:2524453-2524472 Msa0230370:intron 45.0%
TTTGCAACGCGATTCAGGAT+TGG - chr2_2:2524458-2524477 Msa0230370:intron 45.0%
TGGATTCTGTTGAAGCCTCA+AGG - chr2_2:2524478-2524497 Msa0230370:intron 45.0%
TTCATAGTCCATGGTCCTTG+AGG + chr2_2:2524496-2524515 None:intergenic 45.0%
!!! TTGATCGCGCTGGTTTTCTT+TGG + chr2_2:2524606-2524625 None:intergenic 45.0%
ATAGGCTTTCTTGGGAGAGA+TGG + chr2_2:2524687-2524706 None:intergenic 45.0%
ATCTCTCCCAAGAAAGCCTA+TGG - chr2_2:2524686-2524705 Msa0230370:intron 45.0%
GCAATTGGAAGAAAAGGCGA+TGG - chr2_2:2524877-2524896 Msa0230370:CDS 45.0%
GCTGAAAGAACTGCATCTTC+CGG - chr2_2:2524917-2524936 Msa0230370:CDS 45.0%
TAGGCCATGGTGAATCTACA+AGG - chr2_2:2525127-2525146 Msa0230370:intron 45.0%
TCGCACATGGAGTGTGAACT+GGG + chr2_2:2520563-2520582 None:intergenic 50.0%
ATCGCACATGGAGTGTGAAC+TGG + chr2_2:2520564-2520583 None:intergenic 50.0%
! CAGAAAGCAGTGTTGGATGG+AGG + chr2_2:2521039-2521058 None:intergenic 50.0%
CTCCATCCAACACTGCTTTC+TGG - chr2_2:2521037-2521056 Msa0230370:CDS 50.0%
GGAGAACCAGAAAGCAGTGT+TGG + chr2_2:2521046-2521065 None:intergenic 50.0%
GTCGATGTCAGTTGCAATCC+CGG - chr2_2:2521391-2521410 Msa0230370:CDS 50.0%
TCAGTTGCAATCCCGGATGA+AGG - chr2_2:2521398-2521417 Msa0230370:CDS 50.0%
TGCAATCCCGGATGAAGGTA+TGG - chr2_2:2521403-2521422 Msa0230370:CDS 50.0%
! TCCCGGATGAAGGTATGGTT+TGG - chr2_2:2521408-2521427 Msa0230370:CDS 50.0%
GGCACTACTTCGAAAAGAGC+AGG - chr2_2:2522007-2522026 Msa0230370:CDS 50.0%
!! CCAGAAAATGAGAGTGCTGG+TGG + chr2_2:2522824-2522843 None:intergenic 50.0%
! CCACCAGCACTCTCATTTTC+TGG - chr2_2:2522821-2522840 Msa0230370:intron 50.0%
!! CTTGTTGTTCTGGTCATGGG+CGG + chr2_2:2522879-2522898 None:intergenic 50.0%
ACTCCCTGAATCAGGATCAC+TGG + chr2_2:2523374-2523393 None:intergenic 50.0%
GCTGAGGAAGATGCATCTGA+TGG - chr2_2:2523703-2523722 Msa0230370:intron 50.0%
GAGGAAGATGCATCTGATGG+AGG - chr2_2:2523706-2523725 Msa0230370:intron 50.0%
CCGCCGCATCTATCTTCAAA+AGG + chr2_2:2523765-2523784 None:intergenic 50.0%
TCATCACAACCCAAGGGAAG+AGG - chr2_2:2524126-2524145 Msa0230370:intron 50.0%
GGAGCCAAATGACCTCTGTA+TGG - chr2_2:2524434-2524453 Msa0230370:intron 50.0%
CGCGTTGCAAAACCATACAG+AGG + chr2_2:2524449-2524468 None:intergenic 50.0%
TGTTGAAGCCTCAAGGACCA+TGG - chr2_2:2524485-2524504 Msa0230370:intron 50.0%
!! GACTTTGCTTTTGATCGCGC+TGG + chr2_2:2524616-2524635 None:intergenic 50.0%
AAAAGGCGATGGAACGACAG+AGG - chr2_2:2524888-2524907 Msa0230370:CDS 50.0%
AGAACTGCATCTTCCGGTGT+TGG - chr2_2:2524923-2524942 Msa0230370:CDS 50.0%
GCACACCTGCAGTTCTTGAG+AGG - chr2_2:2521309-2521328 Msa0230370:CDS 55.0%
AAGATAGATGCGGCGGAGAC+TGG - chr2_2:2523769-2523788 Msa0230370:intron 55.0%
GGCGGTACGTTGTAAGGCCA+TGG + chr2_2:2523166-2523185 None:intergenic 60.0%
GCGGCGGAGACTGGAATTGA+TGG - chr2_2:2523778-2523797 Msa0230370:intron 60.0%
AGGCACGGTTCGACCAACAC+CGG + chr2_2:2524939-2524958 None:intergenic 60.0%
!! GGTGTTGGTCGAACCGTGCC+TGG - chr2_2:2524938-2524957 Msa0230370:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 2520550 2525400 2520550 ID=Msa0230370;Name=Msa0230370
chr2_2 mRNA 2520550 2525400 2520550 ID=Msa0230370-mRNA-1;Parent=Msa0230370;Name=Msa0230370-mRNA-1;_AED=0.04;_eAED=0.04;_QI=176|1|1|1|1|1|9|337|891
chr2_2 exon 2520550 2521090 2520550 ID=Msa0230370-mRNA-1:exon:853;Parent=Msa0230370-mRNA-1
chr2_2 exon 2521219 2522834 2521219 ID=Msa0230370-mRNA-1:exon:852;Parent=Msa0230370-mRNA-1
chr2_2 exon 2522985 2523220 2522985 ID=Msa0230370-mRNA-1:exon:851;Parent=Msa0230370-mRNA-1
chr2_2 exon 2523824 2523976 2523824 ID=Msa0230370-mRNA-1:exon:850;Parent=Msa0230370-mRNA-1
chr2_2 exon 2524086 2524135 2524086 ID=Msa0230370-mRNA-1:exon:849;Parent=Msa0230370-mRNA-1
chr2_2 exon 2524221 2524273 2524221 ID=Msa0230370-mRNA-1:exon:848;Parent=Msa0230370-mRNA-1
chr2_2 exon 2524531 2524658 2524531 ID=Msa0230370-mRNA-1:exon:847;Parent=Msa0230370-mRNA-1
chr2_2 exon 2524868 2525044 2524868 ID=Msa0230370-mRNA-1:exon:846;Parent=Msa0230370-mRNA-1
chr2_2 exon 2525166 2525400 2525166 ID=Msa0230370-mRNA-1:exon:845;Parent=Msa0230370-mRNA-1
chr2_2 five_prime_UTR 2525225 2525400 2525225 ID=Msa0230370-mRNA-1:five_prime_utr;Parent=Msa0230370-mRNA-1
chr2_2 CDS 2525166 2525224 2525166 ID=Msa0230370-mRNA-1:cds;Parent=Msa0230370-mRNA-1
chr2_2 CDS 2524868 2525044 2524868 ID=Msa0230370-mRNA-1:cds;Parent=Msa0230370-mRNA-1
chr2_2 CDS 2524531 2524658 2524531 ID=Msa0230370-mRNA-1:cds;Parent=Msa0230370-mRNA-1
chr2_2 CDS 2524221 2524273 2524221 ID=Msa0230370-mRNA-1:cds;Parent=Msa0230370-mRNA-1
chr2_2 CDS 2524086 2524135 2524086 ID=Msa0230370-mRNA-1:cds;Parent=Msa0230370-mRNA-1
chr2_2 CDS 2523824 2523976 2523824 ID=Msa0230370-mRNA-1:cds;Parent=Msa0230370-mRNA-1
chr2_2 CDS 2522985 2523220 2522985 ID=Msa0230370-mRNA-1:cds;Parent=Msa0230370-mRNA-1
chr2_2 CDS 2521219 2522834 2521219 ID=Msa0230370-mRNA-1:cds;Parent=Msa0230370-mRNA-1
chr2_2 CDS 2520887 2521090 2520887 ID=Msa0230370-mRNA-1:cds;Parent=Msa0230370-mRNA-1
chr2_2 three_prime_UTR 2520550 2520886 2520550 ID=Msa0230370-mRNA-1:three_prime_utr;Parent=Msa0230370-mRNA-1
Gene Sequence

>Msa0230370

ATGGATTCCAAGACCATTCTTGATTATGCTCTGTTTCAACTCACACCAACTAGAACAAGATTTGAGCTTTTGGTGTTTAATGGAGCTGTTCGTGAGAAAATAGCTTCTGGGTTATTTGAACCTTTCATTTCTCATCTCAAATTTGTTAAAGATGAGATCTCTAAAGGTGGATACTCTATTAGGCTATTGCCTCCATCCAACACTGCTTTCTGGTTCTCCAAATCCACCTTTGAGAGATTTGTGCGGTTTGTTAGCACACCTGCAGTTCTTGAGAGGTTTGTTAGCCTTGAAAAAGAAATCCAGCAGATTGAAAGTCAATTTGAAGCGAATGCCTTGTCGATGTCAGTTGCAATCCCGGATGAAGGAAACTTGCCACACACAAATGGAAACGCAAGGAGGTTAAGTGATTCTGCAAAGTTAAATGATGTACTTGAAGGAGTTGACACTAAAGAAGAGGAAAACTCAAAGATTTCGCTGCAACGTCTTTTGGAGTCTCGAATGGCACTACTTCGAAAAGAGCAGGCAATGGCATATACACGTAGTCTTGTTGCTGGATTTGATATTGACAACATTGATGATCTTGTATATTTTGCAAATGCATTTGGAGCATCGCGTTTAAGGGAAGCTTGCATTAATTTCAAGGATTTATGGAAGAAAAAGCATGCAGATGATCTTTGGGTTCAAGAAGTAGCTGCAATGCAATCAAACTTACCACCAGCACTCTCATTTTCTGGATCATCAGGAATTATACTGGCGAATGACATAGCCGCCCATGACCAGAACAACAAGAATAATAGCTCTACAGACAGTATTCCTTCTGGCGACGAAAATGCATTTGTAGAAAACAAAAAAGACGATGTGAACTTATCGCACATGGCGAATGTTCATATGCCAATGCATATGCCATGGCCTTACAACGTACCGCCATATATGTATAATCTTCAAAATCCTAGTCAGCAAATGCCTTCATACCAAGGATATCCTCCTTACCTTCAAAATAATATGCATTGGTCTTCTAACATGGGAGTGAATCAAAAACCACGAGCAACTAAAAAAGAGAAATCTCATCATAGGAAAGGATCAGAAGAATATGAAGAGCAGCAAACAGATTCCAGTGATCCTGATTCAGGGAGTGAATCTGATTCAGATAAACAGAAAGACTCAAACAATTCTTTGAAGGATGATAAGAGGAAAAAAAACAGAAGGAAATCATCTGGAACAGTTGTGATACGTAATATCAACTACATCACTCCAAAAAGGAGAAATGGAAATGAGAGTGGAGTATCTGATGAATCTTCTTTAGAAGACGATGCTATCTTTGATGAAGAAACCATCAAACAGAAGGTTGGTGATGCACTTGAATCATTGCAGAAGGTCCATAAAGGTGAAAAACGTGGCAATCGAAAAAAGTCAGTGACCAAACACAATAAATCAAATGATGCTGCTGAGGAAGATGCATCTGATGGAGGGAACAAAAATGAGAACTGGAATGCATTCCAGAGCCTTTTGAAGATAGATGCGGCGGAGACTGGAATTGATGGATCAGAACAGATGCAATCGATTGATGTTCAGGATGAACATTTTGTGTTGAGAAACTCTGAAGGAACAATGTCATACGCTGCTAGTTCTGCTCCAAACATGGATTTCAATGAAGTTCCAAAGAATCGTGAAATTGCGGATGACTCATTTATTGTGACTCAAAGAGATGAAGGAAATGAAAGAGGATCGAAGCTGGATGAATATGTAGACAACTGTGTCCCAGTTACAAAGATCAGGGAAAGTATTGGTGAAGATATGATGTTAGCAAACACATCAAGAGGACCAAAAATTGAACTTGATGATCCGTTAAATACTTATGCTGCTGATTCATCACAACCCAAGGGAAGAGGATCAGAAGATTGGTTTATTGTTGATAACAATTTGGAAAGTATGAGAAGCCATGATTCCCCAAATGTGCCTATAGTATTTGATGGTGATAGAACTTTATCATCAGTGAGTGAAAAAAGAAGTGATAGACCTATCATTGATGATTCCTTCATGATTCAAGGTCAGTTTGTAGACAATAATCTTTCTGATTCCCAATGGAAGACAGATATAAGTATGGTTGAAGATCTAACATCTTCCAACAAGGTAGAAACCGACACAAAAGAAAAGAATGCATTATCAAAGATAGAGGAGCCAAATGACCTCTGTATGGTTTTGCAACGCGATTCAGGATTGGATTCTGTTGAAGCCTCAAGGACCATGGACTATGAAATTGACTTTTCTTACACAGAACCTGATAGAAGAGCTTCTATTGATGATTCACATGTTAATGTCAATAACAACAATCTTTCTGATAGTCCAAAGAAAACCAGCGCGATCAAAAGCAAAGTCTCACGTTTGTCAAAGAGCACGCCTGAACCGATTTCTAGAAACAGAAAGCCATCTCTCCCAAGAAAGCCTATGGTTCAAAAGAGCCAAAGGGAAAAGGAAGATGAAATTAGGAAGCAATTGGAAGAAAAGGCGATGGAACGACAGAGGAGAATCGCTGAAAGAACTGCATCTTCCGGTGTTGGTCGAACCGTGCCTGGTAAAGATCAAATAGCAAAGATTTCTTCAAAAACTGACAAGAATAAGACTCAAACTATTAAAGAGACAAACAGAAACAGTTCTGTTAAGGTCAGAGGAATTTAG

Protein sequence

>Msa0230370

MDSKTILDYALFQLTPTRTRFELLVFNGAVREKIASGLFEPFISHLKFVKDEISKGGYSIRLLPPSNTAFWFSKSTFERFVRFVSTPAVLERFVSLEKEIQQIESQFEANALSMSVAIPDEGNLPHTNGNARRLSDSAKLNDVLEGVDTKEEENSKISLQRLLESRMALLRKEQAMAYTRSLVAGFDIDNIDDLVYFANAFGASRLREACINFKDLWKKKHADDLWVQEVAAMQSNLPPALSFSGSSGIILANDIAAHDQNNKNNSSTDSIPSGDENAFVENKKDDVNLSHMANVHMPMHMPWPYNVPPYMYNLQNPSQQMPSYQGYPPYLQNNMHWSSNMGVNQKPRATKKEKSHHRKGSEEYEEQQTDSSDPDSGSESDSDKQKDSNNSLKDDKRKKNRRKSSGTVVIRNINYITPKRRNGNESGVSDESSLEDDAIFDEETIKQKVGDALESLQKVHKGEKRGNRKKSVTKHNKSNDAAEEDASDGGNKNENWNAFQSLLKIDAAETGIDGSEQMQSIDVQDEHFVLRNSEGTMSYAASSAPNMDFNEVPKNREIADDSFIVTQRDEGNERGSKLDEYVDNCVPVTKIRESIGEDMMLANTSRGPKIELDDPLNTYAADSSQPKGRGSEDWFIVDNNLESMRSHDSPNVPIVFDGDRTLSSVSEKRSDRPIIDDSFMIQGQFVDNNLSDSQWKTDISMVEDLTSSNKVETDTKEKNALSKIEEPNDLCMVLQRDSGLDSVEASRTMDYEIDFSYTEPDRRASIDDSHVNVNNNNLSDSPKKTSAIKSKVSRLSKSTPEPISRNRKPSLPRKPMVQKSQREKEDEIRKQLEEKAMERQRRIAERTASSGVGRTVPGKDQIAKISSKTDKNKTQTIKETNRNSSVKVRGI*