AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0606100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606100 MtrunA17_Chr4g0035581 99.284 838 6 0 1 838 1 838 0.0 1719
Msa0606100 MtrunA17_Chr8g0381871 34.242 660 375 11 119 741 16 653 7.72e-116 372
Msa0606100 MtrunA17_Chr7g0269941 39.726 584 313 13 228 800 144 699 7.43e-114 363
Msa0606100 MtrunA17_Chr2g0296441 34.236 628 357 12 153 741 34 644 8.87e-111 357
Msa0606100 MtrunA17_Chr4g0052131 33.739 658 357 13 141 746 17 647 2.03e-109 353
Msa0606100 MtrunA17_Chr4g0065401 35.240 647 362 14 170 788 68 685 2.87e-106 343
Msa0606100 MtrunA17_Chr4g0068511 34.370 611 347 10 152 737 238 819 3.30e-103 340
Msa0606100 MtrunA17_Chr7g0263661 32.868 645 353 18 178 755 87 718 1.32e-90 303
Msa0606100 MtrunA17_Chr2g0279361 32.946 516 312 11 240 746 130 620 8.18e-75 257
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606100 AT2G16440.1 73.055 861 193 8 1 837 1 846 0.0 1240
Msa0606100 AT5G44635.1 34.483 696 390 15 94 755 2 665 3.55e-118 378
Msa0606100 AT5G44635.2 34.483 696 390 15 94 755 2 665 1.02e-117 377
Msa0606100 AT4G02060.2 37.713 586 324 12 227 800 141 697 1.15e-108 350
Msa0606100 AT4G02060.1 37.713 586 324 12 227 800 141 697 1.15e-108 350
Msa0606100 AT1G44900.2 34.049 652 355 16 121 737 210 821 5.27e-107 351
Msa0606100 AT1G44900.1 34.049 652 355 16 121 737 212 823 5.43e-107 351
Msa0606100 AT2G07690.1 34.488 664 370 14 170 801 64 694 1.25e-105 342
Msa0606100 AT5G46280.3 31.776 642 373 9 149 746 19 639 1.80e-105 340
Msa0606100 AT5G46280.1 31.776 642 373 9 149 746 19 639 1.81e-104 340
Msa0606100 AT2G07690.2 34.488 664 368 15 170 801 64 692 6.86e-104 337
Msa0606100 AT5G46280.2 32.045 621 357 9 149 725 19 618 2.19e-102 330
Msa0606100 AT5G46280.4 32.689 569 319 8 149 673 19 567 9.00e-95 308
Msa0606100 AT3G09660.2 32.640 625 352 19 216 784 131 742 4.62e-91 304
Msa0606100 AT3G09660.3 32.797 622 352 19 216 784 131 739 8.04e-91 304
Msa0606100 AT3G09660.1 32.640 625 352 19 216 784 131 742 1.68e-90 303
Msa0606100 AT2G14050.1 32.252 524 305 14 240 746 131 621 3.21e-69 242
Msa0606100 AT2G14050.2 32.252 524 305 14 240 746 131 621 4.35e-69 241

Find 249 sgRNAs with CRISPR-Local

Find 432 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATACTGTTTCTCCTGTTTC+AGG 0.145122 4_2:+52198799 None:intergenic
AATATAGCTTCCCTGATTTC+TGG 0.179319 4_2:+52200724 None:intergenic
GTAGACAAAGACAGCCTTTC+AGG 0.195400 4_2:+52196539 None:intergenic
TTCTCCTGTTTCAGGATCTT+TGG 0.208241 4_2:+52198807 None:intergenic
TCATCAAATAAAACTTCTTC+TGG 0.231583 4_2:+52199293 None:intergenic
GGGACGTTCCATGCGGTTAT+TGG 0.232963 4_2:-52197088 Msa0606100:CDS
TAGAGATTTGATAGCTAAAA+TGG 0.259748 4_2:+52196675 None:intergenic
CGCCGGTCCGACTTACGTTT+GGG 0.265978 4_2:-52201284 Msa0606100:CDS
TTGTGGGTGTATGTGCTTTC+GGG 0.277631 4_2:+52197740 None:intergenic
ATCATGGAGAAGATGCAAAT+TGG 0.278435 4_2:-52197111 Msa0606100:CDS
CCGAATAATCATTCCCTTCA+TGG 0.292850 4_2:+52200762 None:intergenic
GGTGGAGGCATTTCGGCTTC+TGG 0.293566 4_2:-52197343 Msa0606100:CDS
GTCAGCCTTTCATAGATATC+TGG 0.298464 4_2:+52199156 None:intergenic
TATTGTTTCCCTGCACTATA+AGG 0.304910 4_2:-52197922 Msa0606100:CDS
ATGAGGAATTTGAATCCTTC+TGG 0.314341 4_2:-52200908 Msa0606100:intron
GACGGCGGCGACGGCGGCCG+GGG 0.319854 4_2:+52201500 None:intergenic
AGTCACTGGCGCCAAACATC+TGG 0.319935 4_2:-52199131 Msa0606100:CDS
TGATGATTTGGATATGGATT+TGG 0.321742 4_2:-52201173 Msa0606100:CDS
TTGACGGCGGCGACGGCGGC+CGG 0.323649 4_2:+52201498 None:intergenic
AACAAGTGTCATCGAATTCT+TGG 0.324058 4_2:+52200515 None:intergenic
TTACCTCTCTCCACCGGAAC+CGG 0.337220 4_2:+52200670 None:intergenic
ACGCCGGTCCGACTTACGTT+TGG 0.343710 4_2:-52201285 Msa0606100:CDS
GATCAAACAGGTTATTGAAT+TGG 0.344653 4_2:-52201125 Msa0606100:CDS
AAGGATGAGGCGAGAAAGTT+TGG 0.347925 4_2:-52197154 Msa0606100:CDS
TGACGGCGGCGACGGCGGCC+GGG 0.349028 4_2:+52201499 None:intergenic
TGGTGATGATGATTTGGATA+TGG 0.355491 4_2:-52201179 Msa0606100:CDS
GCTCGATTATACCAGAAATC+AGG 0.362038 4_2:-52200735 Msa0606100:CDS
TAAACAAATTGTGAGGCTTC+AGG 0.364258 4_2:-52199765 Msa0606100:CDS
ATTCTCCTTGTTGGTGATCC+TGG 0.367312 4_2:-52198934 Msa0606100:CDS
CTTCTTCTGGATTTCTGCCC+TGG 0.368125 4_2:+52199306 None:intergenic
TCTGTTCGGTTGAGGTGTTC+CGG 0.372748 4_2:+52201462 None:intergenic
GGCAGGGACACGGCGGCCGG+AGG 0.375569 4_2:+52201375 None:intergenic
ATTCTGCTCTGACCCGGTTC+CGG 0.375919 4_2:-52200683 Msa0606100:CDS
GTGTGAGGCGTTCCTCCTTC+AGG 0.376780 4_2:+52199725 None:intergenic
AGAGATGTAACTGCGAAATA+TGG 0.377928 4_2:+52201779 None:intergenic
TCATGGAGAAGATGCAAATT+GGG 0.382324 4_2:-52197110 Msa0606100:CDS
TCAAGGTGGTGATGATGATT+TGG 0.385708 4_2:-52201185 Msa0606100:CDS
ATGATGTGGTGGAGGCATTT+CGG 0.391101 4_2:-52197350 Msa0606100:CDS
GTTTGGATAACTACCAGTTC+TGG 0.398922 4_2:+52197290 None:intergenic
CATGACAAACTGGTGGATAC+TGG 0.399287 4_2:-52199686 Msa0606100:CDS
AATTTACTTAATGCTTGATA+AGG 0.399930 4_2:-52197979 Msa0606100:CDS
GTTGTGGGTGTATGTGCTTT+CGG 0.401989 4_2:+52197739 None:intergenic
CTTGCTATTGCATGACAAAC+TGG 0.407456 4_2:-52199696 Msa0606100:CDS
GCTGCTGATGAATTGATTAC+AGG 0.407975 4_2:-52197705 Msa0606100:CDS
TCTCATAACTACTGGTGTTT+CGG 0.408833 4_2:-52197184 Msa0606100:CDS
ATCAGGTGACTGGTATATAC+AGG 0.409169 4_2:-52199562 Msa0606100:intron
GTTGGCAATTGGACTTGAAT+TGG 0.411791 4_2:+52201534 None:intergenic
ATTCTCCGGAAGTAGCAAAA+AGG 0.412222 4_2:-52197655 Msa0606100:intron
GAGGTGGAAGTTGGTGTGGC+AGG 0.412464 4_2:+52201358 None:intergenic
ACGGCGGCGACGGCGGCCGG+GGG 0.414613 4_2:+52201501 None:intergenic
GTGCAGGGAAACAATATGTT+TGG 0.417678 4_2:+52197929 None:intergenic
TATACAGGGCTATGAGTGTC+AGG 0.419389 4_2:-52199547 Msa0606100:CDS
CCATGAAGGGAATGATTATT+CGG 0.419432 4_2:-52200762 Msa0606100:CDS
GAGGAGTAGGTGTTGGCAAT+TGG 0.421375 4_2:+52201523 None:intergenic
AATGCTTTGAAGTTGGCATC+TGG 0.429342 4_2:-52198982 Msa0606100:CDS
TCATCTAGCTCCCAGATGTT+TGG 0.433147 4_2:+52199120 None:intergenic
CGATGAGGCAGGGTCATCAT+TGG 0.438267 4_2:-52196751 Msa0606100:three_prime_UTR
GAAGGATTTGTTTCCATGGC+TGG 0.441340 4_2:-52196798 Msa0606100:CDS
TAGCATCCTCAACCAGCATC+CGG 0.442650 4_2:+52199345 None:intergenic
CACCGAAGTCCTTGCATTGA+GGG 0.444534 4_2:+52198390 None:intergenic
CCTCATAATCCTTATAGTGC+AGG 0.451180 4_2:+52197913 None:intergenic
CAGCTTCATCTGATAGTTGT+GGG 0.452578 4_2:+52197724 None:intergenic
AATCTCAGTCCAGAAAGTTC+TGG 0.452690 4_2:-52201827 Msa0606100:five_prime_UTR
TCCCGTCACCGTCGCGGTGG+CGG 0.454351 4_2:-52201403 Msa0606100:CDS
CATATAATATGTATCATCAC+TGG 0.458512 4_2:+52196646 None:intergenic
GACATCAAAGTCCCGGATGC+TGG 0.459233 4_2:-52199357 Msa0606100:CDS
GCAGGGACACGGCGGCCGGA+GGG 0.461259 4_2:+52201376 None:intergenic
TACCTCGGTCGCTCAAAACT+AGG 0.463388 4_2:+52198683 None:intergenic
CAGGGACACGGCGGCCGGAG+GGG 0.465923 4_2:+52201377 None:intergenic
AAATCAGGGAAGCTATATTC+AGG 0.467213 4_2:-52200720 Msa0606100:CDS
GCATCTGGCGCTAGCTTTCG+TGG 0.468482 4_2:-52198967 Msa0606100:CDS
GGAATCCATTGGAGTGGAAT+CGG 0.468602 4_2:+52201677 None:intergenic
GAAGTGATACGAACCATTGT+TGG 0.469083 4_2:+52201656 None:intergenic
TTAAGATGAATTTCGCTGCC+AGG 0.469150 4_2:+52196951 None:intergenic
CAGCGAAGGATTTGTTTCCA+TGG 0.470604 4_2:-52196802 Msa0606100:CDS
TGATTGATTGACGGCGGCGA+CGG 0.471280 4_2:+52201491 None:intergenic
TGTGGCAGGGACACGGCGGC+CGG 0.471414 4_2:+52201372 None:intergenic
TTGAAAAGCATGTTCAAACT+AGG 0.472903 4_2:-52200958 Msa0606100:CDS
GATATAAATATTCTCCTTGT+TGG 0.474086 4_2:-52198943 Msa0606100:CDS
TCGGATTCGCTTCTCAGAAT+CGG 0.474303 4_2:-52197462 Msa0606100:intron
CCTCCTTCAGGTATCTCGTC+AGG 0.476130 4_2:+52199737 None:intergenic
GTGGCCAAAGATCCTGAAAC+AGG 0.477237 4_2:-52198811 Msa0606100:CDS
ACCGCCACCGCGACGGTGAC+GGG 0.480615 4_2:+52201402 None:intergenic
GGATTATATCGTGAACCGCT+AGG 0.481496 4_2:+52198352 None:intergenic
CCTGCACTATAAGGATTATG+AGG 0.483526 4_2:-52197913 Msa0606100:intron
TTCGGTTGAGGTGTTCCGGA+TGG 0.484095 4_2:+52201466 None:intergenic
CAATGCAAGGACTTCGGTGT+TGG 0.484227 4_2:-52198386 Msa0606100:CDS
TGAACCTACTGTTTGCTTGA+GGG 0.484828 4_2:-52200550 Msa0606100:CDS
AAAGAAAGGTCTTCTTTGCC+AGG 0.485292 4_2:-52199094 Msa0606100:intron
TTGGAATTGTCCGGTGAAGA+AGG 0.487245 4_2:+52201553 None:intergenic
CGCGGTGGCGGTATCCCCTC+CGG 0.488011 4_2:-52201391 Msa0606100:CDS
GGCATTTACACCAGTGGAAG+GGG 0.488022 4_2:-52198862 Msa0606100:CDS
GATTATATCGTGAACCGCTA+GGG 0.498770 4_2:+52198353 None:intergenic
GTATGAGAAATTGATCAAAC+AGG 0.500686 4_2:-52201137 Msa0606100:CDS
GATATGGATTTGGATATTGA+AGG 0.501917 4_2:-52201163 Msa0606100:CDS
GATTTGTGAAAACGCGGGAA+TGG 0.502495 4_2:+52201708 None:intergenic
GACATGGATCTCATAACTAC+TGG 0.502893 4_2:-52197192 Msa0606100:CDS
AAGTTGGTGTGGCAGGGACA+CGG 0.505458 4_2:+52201365 None:intergenic
GGACTTGAATTGGAATTGTC+CGG 0.506755 4_2:+52201544 None:intergenic
GATTTGATAGCTAAAATGGT+TGG 0.507334 4_2:+52196679 None:intergenic
GAACCATTGTTGGAATCCAT+TGG 0.507852 4_2:+52201666 None:intergenic
CATAGGAAAGTCTTCGGAGG+TGG 0.508882 4_2:+52201342 None:intergenic
GAAGCGAAGCGAGATCTGTT+CGG 0.512176 4_2:+52201448 None:intergenic
AATAGACTCTCAATCTGCCT+TGG 0.512928 4_2:+52197506 None:intergenic
GACTTAACAGTTCTCTGAGT+TGG 0.513256 4_2:+52199518 None:intergenic
GGCTTCCGATTCCACTCCAA+TGG 0.513615 4_2:-52201682 Msa0606100:CDS
CCGGTCCGACTTACGTTTGG+GGG 0.515188 4_2:-52201282 Msa0606100:CDS
TGAGAGGATGGTATCCATGA+AGG 0.515734 4_2:-52200776 Msa0606100:CDS
AGACACTCGCAACATGATCA+TGG 0.516681 4_2:-52197127 Msa0606100:CDS
GTTGTCAATGACAGACAAGC+GGG 0.516945 4_2:+52198330 None:intergenic
AGGTGGAAGTTGGTGTGGCA+GGG 0.517814 4_2:+52201359 None:intergenic
ACGTTCCATGCGGTTATTGG+AGG 0.517993 4_2:-52197085 Msa0606100:intron
GGGAGTTGGAGTGGCATCAG+AGG 0.518215 4_2:+52201426 None:intergenic
CTGGTGGATACTGGAAAGCC+AGG 0.518819 4_2:-52199677 Msa0606100:CDS
TTCCCTCAATGCAAGGACTT+CGG 0.519427 4_2:-52198392 Msa0606100:CDS
AAGCGAGATCTGTTCGGTTG+AGG 0.519567 4_2:+52201454 None:intergenic
AATTAATTAACAGGTAATAA+CGG 0.521998 4_2:-52197534 Msa0606100:intron
AGAACATGATACGATGAGGC+AGG 0.523495 4_2:-52196762 Msa0606100:exon
TAAGATGGTGAGGTATCCTC+TGG 0.524702 4_2:-52201041 Msa0606100:CDS
CATGGAAACAAATCCTTCGC+TGG 0.526272 4_2:+52196803 None:intergenic
TATGGAGGTTGACAATGGCC+AGG 0.526806 4_2:-52199324 Msa0606100:CDS
ATTACGACTTAGTGAAGCAT+TGG 0.527011 4_2:-52197486 Msa0606100:CDS
ATGTAACTGCGAAATATGGC+GGG 0.528908 4_2:+52201783 None:intergenic
TTTGTTGTATATCAGGTGAC+TGG 0.529577 4_2:-52199572 Msa0606100:intron
AGCTGCGACTTGCTTGTACC+AGG 0.531962 4_2:+52198916 None:intergenic
CGGATGGAGTGATTGATTGA+CGG 0.532588 4_2:+52201482 None:intergenic
TGAAGACATAGGAAAGTCTT+CGG 0.535067 4_2:+52201336 None:intergenic
TTTCGGCAAGCGAAAGGATG+AGG 0.535401 4_2:-52197167 Msa0606100:CDS
CGTCAATCAATCACTCCATC+CGG 0.536330 4_2:-52201481 Msa0606100:CDS
GAACATGGAGCAGGATGTGT+TGG 0.537785 4_2:-52197796 Msa0606100:CDS
TACCTCTCTCCACCGGAACC+GGG 0.539167 4_2:+52200671 None:intergenic
TAAGATGAATTTCGCTGCCA+GGG 0.539727 4_2:+52196952 None:intergenic
AGCCACAGACTTACTTGCAT+CGG 0.543317 4_2:+52200487 None:intergenic
CTGCTCTGACCCGGTTCCGG+TGG 0.545661 4_2:-52200680 Msa0606100:CDS
GCAGCTTCATCTGATAGTTG+TGG 0.546328 4_2:+52197723 None:intergenic
TCTGCAATGGATACCAGAAC+TGG 0.546883 4_2:-52197303 Msa0606100:intron
TCACGAATTGTATAGTAAGA+TGG 0.547022 4_2:-52201056 Msa0606100:CDS
CTGAACCTACTGTTTGCTTG+AGG 0.548909 4_2:-52200551 Msa0606100:CDS
CTCACCTCAACTCTGTCACC+TGG 0.549979 4_2:+52199659 None:intergenic
CGACGGTGACGGGAGGGAGT+TGG 0.552628 4_2:+52201412 None:intergenic
ATATTCAGGTGTCTAGTATG+TGG 0.553917 4_2:-52200706 Msa0606100:CDS
AGGGGTAGGGGAAAATTCTC+CGG 0.554199 4_2:-52197669 Msa0606100:CDS
TGGAGTGGAATCGGAAGCCA+TGG 0.554448 4_2:+52201686 None:intergenic
CTCGATTATACCAGAAATCA+GGG 0.554479 4_2:-52200734 Msa0606100:CDS
CTCATAATCCTTATAGTGCA+GGG 0.554579 4_2:+52197914 None:intergenic
AGCATCCTCAACCAGCATCC+GGG 0.555444 4_2:+52199346 None:intergenic
AAACAGGTTATTGAATTGGA+AGG 0.555576 4_2:-52201121 Msa0606100:CDS
AAGTCTTCGGAGGTGGAAGT+TGG 0.558625 4_2:+52201349 None:intergenic
GTCACTGGCGCCAAACATCT+GGG 0.560062 4_2:-52199130 Msa0606100:CDS
GAGCTAGATGATGTAAAGAA+AGG 0.560591 4_2:-52199108 Msa0606100:CDS
GATGCTGGTTGAGGATGCTA+TGG 0.564286 4_2:-52199342 Msa0606100:CDS
AATCTTCAGGTTCTTGAGAG+TGG 0.565854 4_2:-52198709 Msa0606100:intron
ATGTGGATTCTGCTCTGACC+CGG 0.565866 4_2:-52200689 Msa0606100:CDS
ACACCGAAGTCCTTGCATTG+AGG 0.566072 4_2:+52198389 None:intergenic
ATGTTTGGCAAGTCGTCGGT+CGG 0.570550 4_2:+52197944 None:intergenic
GCCAACACCTACTCCTCCCC+CGG 0.570982 4_2:-52201517 Msa0606100:CDS
GACTTAGTGAAGCATTGGCT+CGG 0.572654 4_2:-52197481 Msa0606100:CDS
CTTCACAGGAACTATTGACA+TGG 0.572711 4_2:-52197208 Msa0606100:intron
GAGAGGATGGTATCCATGAA+GGG 0.572804 4_2:-52200775 Msa0606100:CDS
AAAGTCCCGGATGCTGGTTG+AGG 0.573038 4_2:-52199351 Msa0606100:CDS
GCCGGTCCGACTTACGTTTG+GGG 0.574067 4_2:-52201283 Msa0606100:CDS
TACCGCCACCGCGACGGTGA+CGG 0.574604 4_2:+52201401 None:intergenic
TGAGGAATGTGAAGTGAGTG+AGG 0.575029 4_2:+52201742 None:intergenic
GTGACGGGAGGGAGTTGGAG+TGG 0.576008 4_2:+52201417 None:intergenic
TTGATTGACGGCGGCGACGG+CGG 0.576601 4_2:+52201494 None:intergenic
ATAATTGCAGAACATGGAGC+AGG 0.578019 4_2:-52197805 Msa0606100:intron
ACCTCGGTCGCTCAAAACTA+GGG 0.578032 4_2:+52198684 None:intergenic
ACTCCAATGGATTCCAACAA+TGG 0.580647 4_2:-52201669 Msa0606100:intron
CTGGTGTTTCGGCAAGCGAA+AGG 0.580745 4_2:-52197173 Msa0606100:CDS
TGCAATGCAGCAATCTGCAA+TGG 0.581576 4_2:-52197316 Msa0606100:CDS
ACAAACTGTTTCAATAGCAA+AGG 0.582486 4_2:-52198428 Msa0606100:CDS
ACAAAATGTCTGACAATGCA+AGG 0.583185 4_2:-52198639 Msa0606100:CDS
CAATATGTTTGGCAAGTCGT+CGG 0.583594 4_2:+52197940 None:intergenic
GACTTTCCTATGTCTTCAGA+AGG 0.584050 4_2:-52201331 Msa0606100:CDS
ATATGGATTTGGATATTGAA+GGG 0.585173 4_2:-52201162 Msa0606100:CDS
AGGTAATAACGGCAACTCCA+AGG 0.585966 4_2:-52197523 Msa0606100:CDS
GTTGCTACTCTCGCCAGCGA+AGG 0.586679 4_2:-52196816 Msa0606100:CDS
TGAAAGGCTGACAAAGTCAC+TGG 0.588015 4_2:-52199145 Msa0606100:CDS
CTCAGTCCAGAAAGTTCTGG+CGG 0.589685 4_2:-52201824 Msa0606100:five_prime_UTR
ATGTGAATGATGCGATTCAG+AGG 0.592525 4_2:-52201240 Msa0606100:CDS
GACCCGGTTCCGGTGGAGAG+AGG 0.592602 4_2:-52200673 Msa0606100:intron
TGGCATTTACACCAGTGGAA+GGG 0.592837 4_2:-52198863 Msa0606100:CDS
ACTGTTTCAATAGCAAAGGC+AGG 0.593633 4_2:-52198424 Msa0606100:CDS
ATTGTTGGAATCCATTGGAG+TGG 0.594571 4_2:+52201671 None:intergenic
AACAACCAGATATCTATGAA+AGG 0.595448 4_2:-52199161 Msa0606100:CDS
TTTCCTATGTCTTCAGAAGG+TGG 0.595874 4_2:-52201328 Msa0606100:CDS
GGTTGGATTGACTGCTTACG+TGG 0.597160 4_2:-52198830 Msa0606100:CDS
TTCGGAGGTGGAAGTTGGTG+TGG 0.598589 4_2:+52201354 None:intergenic
CCACGTGGCATTTACACCAG+TGG 0.599464 4_2:-52198868 Msa0606100:CDS
CATGGAGAAGATGCAAATTG+GGG 0.599489 4_2:-52197109 Msa0606100:CDS
TTATTGCTTCCCTCAATGCA+AGG 0.600052 4_2:-52198399 Msa0606100:CDS
GTCTCAGGTGGCTAAACTGA+AGG 0.601377 4_2:-52199193 Msa0606100:intron
TGGACAAAAGAGTGGGAGGA+AGG 0.601830 4_2:+52198302 None:intergenic
GAACTAAAGAATCAGAGCCC+TGG 0.602624 4_2:-52196969 Msa0606100:CDS
CCCTCCCGTCACCGTCGCGG+TGG 0.603758 4_2:-52201406 Msa0606100:CDS
GCTGGTTGAGGATGCTATGG+AGG 0.604167 4_2:-52199339 Msa0606100:CDS
TCAGTCCAGAAAGTTCTGGC+GGG 0.607335 4_2:-52201823 Msa0606100:five_prime_UTR
AGCAATATGAGAAGCTACAA+TGG 0.607617 4_2:+52196517 None:intergenic
AGGTGGTGACGGTTACGACA+TGG 0.608183 4_2:-52201311 Msa0606100:CDS
GTGGCATTTACACCAGTGGA+AGG 0.610034 4_2:-52198864 Msa0606100:CDS
GATGTAACTGCGAAATATGG+CGG 0.610333 4_2:+52201782 None:intergenic
TTACTGATAAACAAATTGTG+AGG 0.611797 4_2:-52199772 Msa0606100:CDS
ATGGAGGTTGACAATGGCCA+GGG 0.614550 4_2:-52199323 Msa0606100:CDS
AGGGGATACCGCCACCGCGA+CGG 0.615181 4_2:+52201395 None:intergenic
TCACCACCTTCTGAAGACAT+AGG 0.619538 4_2:+52201325 None:intergenic
CATCAATGCAGCAGATACCT+CGG 0.625698 4_2:+52198668 None:intergenic
AACTAACCTGGACAAAAGAG+TGG 0.626323 4_2:+52198294 None:intergenic
ATGTCTTCAGAAGGTGGTGA+CGG 0.626489 4_2:-52201322 Msa0606100:CDS
CCACCGCGACGGTGACGGGA+GGG 0.629476 4_2:+52201406 None:intergenic
GTGTAATTACCTCTCTCCAC+CGG 0.632724 4_2:+52200664 None:intergenic
ACTCCCTCCCGTCACCGTCG+CGG 0.633038 4_2:-52201409 Msa0606100:CDS
ATATAATATGTATCATCACT+GGG 0.634352 4_2:+52196647 None:intergenic
GCCATGGATTTGTGAAAACG+CGG 0.640208 4_2:+52201702 None:intergenic
AAAGCCAGGTGACAGAGTTG+AGG 0.641668 4_2:-52199663 Msa0606100:intron
TCTTCCCTCAAGCAAACAGT+AGG 0.642149 4_2:+52200546 None:intergenic
CCATGGATTTGTGAAAACGC+GGG 0.647721 4_2:+52201703 None:intergenic
GAACATGATACGATGAGGCA+GGG 0.647776 4_2:-52196761 Msa0606100:exon
TCAGGTGACTGGTATATACA+GGG 0.649445 4_2:-52199561 Msa0606100:intron
GCCACCGCGACGGTGACGGG+AGG 0.650641 4_2:+52201405 None:intergenic
AACCTGGACAAAAGAGTGGG+AGG 0.651252 4_2:+52198298 None:intergenic
TAATACCTCCAATAACCGCA+TGG 0.653841 4_2:+52197080 None:intergenic
AAAATGGCAAGCACCTCCAG+AGG 0.658144 4_2:+52201025 None:intergenic
TTGGCTTGCGCAAACCCTAG+CGG 0.658205 4_2:-52198367 Msa0606100:CDS
GATGGTGAGGTATCCTCTGG+AGG 0.660588 4_2:-52201038 Msa0606100:CDS
ACTAACCTGGACAAAAGAGT+GGG 0.661844 4_2:+52198295 None:intergenic
ACACCTGACGAGATACCTGA+AGG 0.663788 4_2:-52199740 Msa0606100:CDS
TTAAGAGCTCAACTTCAATG+AGG 0.667900 4_2:-52200925 Msa0606100:CDS
AATAGCAAGCTAACAGTGTG+AGG 0.667908 4_2:+52199710 None:intergenic
GCTATTGCATGACAAACTGG+TGG 0.668028 4_2:-52199693 Msa0606100:CDS
TGTTGTCAATGACAGACAAG+CGG 0.675119 4_2:+52198329 None:intergenic
AATTGTATAGTAAGATGGTG+AGG 0.675670 4_2:-52201051 Msa0606100:CDS
ATACAGGGCTATGAGTGTCA+GGG 0.676940 4_2:-52199546 Msa0606100:CDS
TGTAACTGCGAAATATGGCG+GGG 0.677055 4_2:+52201784 None:intergenic
TTGTACCAGGATCACCAACA+AGG 0.678899 4_2:+52198929 None:intergenic
GCATTTACACCAGTGGAAGG+GGG 0.685959 4_2:-52198861 Msa0606100:CDS
GGGGACTAACATTAGCGTGG+AGG 0.686321 4_2:-52201263 Msa0606100:CDS
AGGGCTATGAGTGTCAGGGT+AGG 0.695713 4_2:-52199542 Msa0606100:CDS
ATGGAGTGATTGATTGACGG+CGG 0.697982 4_2:+52201485 None:intergenic
GATGCTATGGAGGTTGACAA+TGG 0.706325 4_2:-52199329 Msa0606100:CDS
TTGTCAATGACAGACAAGCG+GGG 0.713062 4_2:+52198331 None:intergenic
CCTGACGAGATACCTGAAGG+AGG 0.715290 4_2:-52199737 Msa0606100:CDS
AGACATAGGAAAGTCTTCGG+AGG 0.717493 4_2:+52201339 None:intergenic
ATGGAGAAGATGCAAATTGG+GGG 0.717552 4_2:-52197108 Msa0606100:CDS
TGCAAGGAGCATGTTACACG+AGG 0.719897 4_2:-52198623 Msa0606100:intron
CCACTGGTGTAAATGCCACG+TGG 0.732070 4_2:+52198868 None:intergenic
GGTTACGACATGGATGACGC+CGG 0.737367 4_2:-52201301 Msa0606100:CDS
AAAATACTGATAAACTAACG+GGG 0.751048 4_2:+52196599 None:intergenic
TTGGTGTGGCAGGGACACGG+CGG 0.753839 4_2:+52201368 None:intergenic
ATACACAAACTTTCTCCACG+TGG 0.768452 4_2:-52198883 Msa0606100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTCTCTTTAAAAATAAA+TGG - chr4_2:52200148-52200167 Msa0606100:intron 10.0%
!!! TCCAATAAATTTTTTTTGTT+TGG - chr4_2:52198094-52198113 Msa0606100:intron 15.0%
!! AATTAATTAACAGGTAATAA+CGG - chr4_2:52200685-52200704 Msa0606100:CDS 15.0%
!! TTAGTCATATATAGTTTATT+TGG + chr4_2:52200981-52201000 None:intergenic 15.0%
!!! GTGATCATTTTAAATTATAT+TGG + chr4_2:52201217-52201236 None:intergenic 15.0%
!! TAAAAATACTGATAAACTAA+CGG + chr4_2:52201625-52201644 None:intergenic 15.0%
!!! TTAGTTTATCAGTATTTTTA+TGG - chr4_2:52201625-52201644 Msa0606100:intron 15.0%
!!! TAGTTTATCAGTATTTTTAT+GGG - chr4_2:52201626-52201645 Msa0606100:intron 15.0%
!! GCCAAACAAAAAAAATTTAT+TGG + chr4_2:52198098-52198117 None:intergenic 20.0%
!! AATAATCAATTTGATCTAGA+AGG - chr4_2:52198191-52198210 Msa0606100:intron 20.0%
!! AATAATCATTTGAATTGTAC+TGG - chr4_2:52198266-52198285 Msa0606100:intron 20.0%
!! ATAATCATTTGAATTGTACT+GGG - chr4_2:52198267-52198286 Msa0606100:intron 20.0%
!!! AGTTTTATTTGATGAAGAAA+AGG - chr4_2:52198934-52198953 Msa0606100:CDS 20.0%
!!! TTTTTTCTAAAAACTTTGCA+TGG - chr4_2:52199667-52199686 Msa0606100:CDS 20.0%
!! AATTTACTTAATGCTTGATA+AGG - chr4_2:52200240-52200259 Msa0606100:intron 20.0%
!! CTGTTAATTAATTGATAGAT+AGG + chr4_2:52200678-52200697 None:intergenic 20.0%
!! CTATCTATCAATTAATTAAC+AGG - chr4_2:52200676-52200695 Msa0606100:CDS 20.0%
!!! CTATTTTTTATCTACAAATC+AGG + chr4_2:52200807-52200826 None:intergenic 20.0%
!!! ACTAAATGTTTTAGAAAGAA+TGG + chr4_2:52201165-52201184 None:intergenic 20.0%
!! AAAAATAATCTCAAAGGTAA+GGG + chr4_2:52201303-52201322 None:intergenic 20.0%
!! TAAAAATAATCTCAAAGGTA+AGG + chr4_2:52201304-52201323 None:intergenic 20.0%
!! ATATAATATGTATCATCACT+GGG + chr4_2:52201575-52201594 None:intergenic 20.0%
!! AAAAATACTGATAAACTAAC+GGG + chr4_2:52201624-52201643 None:intergenic 20.0%
!!! ATTTAGTTTTTTTTCCTGAA+AGG - chr4_2:52201666-52201685 Msa0606100:intron 20.0%
! TAGAAATCTGAATAAGAAGA+TGG + chr4_2:52196598-52196617 None:intergenic 25.0%
!!! ATTTTGAAACCCTATTTTTC+AGG - chr4_2:52196642-52196661 Msa0606100:three_prime_UTR 25.0%
! ATATGGATTTGGATATTGAA+GGG - chr4_2:52197057-52197076 Msa0606100:intron 25.0%
! CATCAAAACCATATCAAAAA+TGG + chr4_2:52197213-52197232 None:intergenic 25.0%
!!! TTTGTTTTGAAGATATTGAG+AGG - chr4_2:52197427-52197446 Msa0606100:intron 25.0%
!!! TAGTTCTATATTTTGACTGT+TGG - chr4_2:52197767-52197786 Msa0606100:CDS 25.0%
! TGAATGATATTTGATGTTGA+AGG - chr4_2:52197808-52197827 Msa0606100:intron 25.0%
! GAATGATATTTGATGTTGAA+GGG - chr4_2:52197809-52197828 Msa0606100:intron 25.0%
!!! AAGCTTCTTTTAGCTTTTTT+CGG - chr4_2:52197847-52197866 Msa0606100:intron 25.0%
! TATATTTGACAATTCCAGTA+TGG - chr4_2:52198128-52198147 Msa0606100:intron 25.0%
!! GTAAAAAATTACCCGATTTT+AGG + chr4_2:52198171-52198190 None:intergenic 25.0%
! ATATGTTAATTGCAGTTTCA+AGG + chr4_2:52198410-52198429 None:intergenic 25.0%
! AACATATCTTCTCTAATTTC+AGG - chr4_2:52198423-52198442 Msa0606100:CDS 25.0%
! TTACTGATAAACAAATTGTG+AGG - chr4_2:52198447-52198466 Msa0606100:intron 25.0%
! ATATACAACAAAACACTCAT+GGG + chr4_2:52198639-52198658 None:intergenic 25.0%
! TTAAGTCATTGTTCAAAGTA+TGG - chr4_2:52198717-52198736 Msa0606100:intron 25.0%
! TAAGTCATTGTTCAAAGTAT+GGG - chr4_2:52198718-52198737 Msa0606100:intron 25.0%
! TCATCAAATAAAACTTCTTC+TGG + chr4_2:52198929-52198948 None:intergenic 25.0%
!!! TTTATTTTCTTGCAGCTTTT+TGG - chr4_2:52199210-52199229 Msa0606100:intron 25.0%
!! TTATTTTCTTGCAGCTTTTT+GGG - chr4_2:52199211-52199230 Msa0606100:intron 25.0%
! GATATAAATATTCTCCTTGT+TGG - chr4_2:52199276-52199295 Msa0606100:intron 25.0%
! TTTAGAAAAAACAAGCAGAT+AGG + chr4_2:52199658-52199677 None:intergenic 25.0%
! ATGAAAACCCTAAAAAATAG+AGG + chr4_2:52200050-52200069 None:intergenic 25.0%
!!! CTATTTTTTAGGGTTTTCAT+TGG - chr4_2:52200050-52200069 Msa0606100:intron 25.0%
!!! ATTTGAGTTGATCTTTTTTC+TGG - chr4_2:52200205-52200224 Msa0606100:intron 25.0%
! TTACAGGCTATGTAAAAATA+AGG - chr4_2:52200530-52200549 Msa0606100:CDS 25.0%
! TACAGGCTATGTAAAAATAA+GGG - chr4_2:52200531-52200550 Msa0606100:CDS 25.0%
! GTCATATATAGTTTATTTGG+AGG + chr4_2:52200978-52200997 None:intergenic 25.0%
! ACTGGTAAAAATAATCTCAA+AGG + chr4_2:52201309-52201328 None:intergenic 25.0%
!! TAGAGATTTGATAGCTAAAA+TGG + chr4_2:52201547-52201566 None:intergenic 25.0%
! CATATAATATGTATCATCAC+TGG + chr4_2:52201576-52201595 None:intergenic 25.0%
! AAAATACTGATAAACTAACG+GGG + chr4_2:52201623-52201642 None:intergenic 25.0%
!!! TTTATCAGTATTTTTATGGG+TGG - chr4_2:52201629-52201648 Msa0606100:intron 25.0%
!!! TTACTCTTTTTTACTGTTGT+TGG + chr4_2:52201736-52201755 None:intergenic 25.0%
GGAATGGAAAATGAAAAATG+AGG + chr4_2:52196498-52196517 None:intergenic 30.0%
! TGATGATTTGGATATGGATT+TGG - chr4_2:52197046-52197065 Msa0606100:intron 30.0%
GATATGGATTTGGATATTGA+AGG - chr4_2:52197056-52197075 Msa0606100:intron 30.0%
GTATGAGAAATTGATCAAAC+AGG - chr4_2:52197082-52197101 Msa0606100:intron 30.0%
GATCAAACAGGTTATTGAAT+TGG - chr4_2:52197094-52197113 Msa0606100:CDS 30.0%
AAACAGGTTATTGAATTGGA+AGG - chr4_2:52197098-52197117 Msa0606100:CDS 30.0%
TCACGAATTGTATAGTAAGA+TGG - chr4_2:52197163-52197182 Msa0606100:CDS 30.0%
AATTGTATAGTAAGATGGTG+AGG - chr4_2:52197168-52197187 Msa0606100:CDS 30.0%
!!! TGATATGGTTTTGATGAACT+TGG - chr4_2:52197217-52197236 Msa0606100:intron 30.0%
! TTTTGATGAACTTGGTTACT+AGG - chr4_2:52197225-52197244 Msa0606100:intron 30.0%
! GAACATGCTTTTCAAACATA+GGG + chr4_2:52197256-52197275 None:intergenic 30.0%
! TGAACATGCTTTTCAAACAT+AGG + chr4_2:52197257-52197276 None:intergenic 30.0%
! TTGAAAAGCATGTTCAAACT+AGG - chr4_2:52197261-52197280 Msa0606100:intron 30.0%
TGATATGTGATGATTGTTTG+TGG - chr4_2:52197403-52197422 Msa0606100:intron 30.0%
!! TTTTGAAGATATTGAGAGGA+TGG - chr4_2:52197431-52197450 Msa0606100:intron 30.0%
! AACTGAATGTAATGTTTTGC+TGG - chr4_2:52197620-52197639 Msa0606100:intron 30.0%
!!! TGCTGGCTATTTTGATTTTT+AGG - chr4_2:52197637-52197656 Msa0606100:intron 30.0%
ACATAGCATACATAACGTAA+GGG + chr4_2:52197877-52197896 None:intergenic 30.0%
TACATAGCATACATAACGTA+AGG + chr4_2:52197878-52197897 None:intergenic 30.0%
TTTCCTGCAAAGTAAAACAT+AGG - chr4_2:52197967-52197986 Msa0606100:CDS 30.0%
TGGAATATAACTTTCTGAAC+TGG - chr4_2:52198004-52198023 Msa0606100:intron 30.0%
AAAAACTACTATTAACCTGC+TGG - chr4_2:52198052-52198071 Msa0606100:intron 30.0%
ACATTATTGAATCACCATAC+TGG + chr4_2:52198145-52198164 None:intergenic 30.0%
CAATAATGTCTGCCTAAAAT+CGG - chr4_2:52198156-52198175 Msa0606100:intron 30.0%
AATAATGTCTGCCTAAAATC+GGG - chr4_2:52198157-52198176 Msa0606100:intron 30.0%
!! GGTAGATTTTAGTGATAAGT+TGG - chr4_2:52198288-52198307 Msa0606100:intron 30.0%
! TTTAGTGATAAGTTGGATGA+TGG - chr4_2:52198295-52198314 Msa0606100:intron 30.0%
AAAATAGAAGCTAATGACCA+TGG + chr4_2:52198321-52198340 None:intergenic 30.0%
!! GTTTTGATCATGTGACTATT+TGG - chr4_2:52198350-52198369 Msa0606100:CDS 30.0%
CTATTTATCAGAGTATGTCA+TGG + chr4_2:52198592-52198611 None:intergenic 30.0%
GATATACAACAAAACACTCA+TGG + chr4_2:52198640-52198659 None:intergenic 30.0%
!! TGAGTGTTTTGTTGTATATC+AGG - chr4_2:52198640-52198659 Msa0606100:CDS 30.0%
AAATGCAAATGAGTTTGAGA+AGG + chr4_2:52198747-52198766 None:intergenic 30.0%
TAAAAAAGACATCAAAGTCC+CGG - chr4_2:52198855-52198874 Msa0606100:CDS 30.0%
AACAACCAGATATCTATGAA+AGG - chr4_2:52199058-52199077 Msa0606100:intron 30.0%
GTTGTTTGACAAATATTCTG+AGG - chr4_2:52199178-52199197 Msa0606100:CDS 30.0%
! TATTTTCTTGCAGCTTTTTG+GGG - chr4_2:52199212-52199231 Msa0606100:intron 30.0%
CATTAGACACTAAAAGATCA+TGG + chr4_2:52199454-52199473 None:intergenic 30.0%
CTAATGTACAAGAAATGCAA+TGG - chr4_2:52199468-52199487 Msa0606100:intron 30.0%
! ATGTTTTCTGCTAAATCTTC+AGG - chr4_2:52199497-52199516 Msa0606100:intron 30.0%
! TCAAAAGTACAAAGCTAACA+TGG + chr4_2:52199728-52199747 None:intergenic 30.0%
ATAAACAGAGACAAGTGTAT+TGG + chr4_2:52199755-52199774 None:intergenic 30.0%
ACAAACTGTTTCAATAGCAA+AGG - chr4_2:52199791-52199810 Msa0606100:intron 30.0%
! TGATAACTAGTTTATGACTC+TGG - chr4_2:52199963-52199982 Msa0606100:intron 30.0%
! AGCAATCCATTTTAAACCTT+GGG - chr4_2:52200020-52200039 Msa0606100:intron 30.0%
TATGCAAAAACACTTAAGCT+TGG + chr4_2:52200373-52200392 None:intergenic 30.0%
ACAGGCTATGTAAAAATAAG+GGG - chr4_2:52200532-52200551 Msa0606100:CDS 30.0%
CTATGTAAAAATAAGGGGTA+GGG - chr4_2:52200537-52200556 Msa0606100:CDS 30.0%
TATGTAAAAATAAGGGGTAG+GGG - chr4_2:52200538-52200557 Msa0606100:CDS 30.0%
!! TATTAAGTAACTTGTTGCAC+AGG - chr4_2:52200837-52200856 Msa0606100:intron 30.0%
AGGAATACAATAGAGTATAG+GGG + chr4_2:52200958-52200977 None:intergenic 30.0%
GAGGAATACAATAGAGTATA+GGG + chr4_2:52200959-52200978 None:intergenic 30.0%
! CTAAATCCTTTTATCTTCAC+AGG - chr4_2:52200997-52201016 Msa0606100:CDS 30.0%
ATAGTTCCTGTGAAGATAAA+AGG + chr4_2:52201006-52201025 None:intergenic 30.0%
! TTATGTTCAGTTTGAGACAA+TGG - chr4_2:52201190-52201209 Msa0606100:CDS 30.0%
TAAAATGATCACGCAGATAT+TGG - chr4_2:52201225-52201244 Msa0606100:CDS 30.0%
CATTAGTTCACTTATCCTTA+GGG + chr4_2:52201349-52201368 None:intergenic 30.0%
TCATTAGTTCACTTATCCTT+AGG + chr4_2:52201350-52201369 None:intergenic 30.0%
TTTCATGTTTAATGCAGCTA+AGG - chr4_2:52201374-52201393 Msa0606100:CDS 30.0%
AAAAAGAACATGATACGATG+AGG - chr4_2:52201453-52201472 Msa0606100:CDS 30.0%
! GATTTGATAGCTAAAATGGT+TGG + chr4_2:52201543-52201562 None:intergenic 30.0%
AGAGATGTAACTGCGAAATA+TGG + chr4_2:52196443-52196462 None:intergenic 35.0%
GAAGAAGGACCTGAAAAATA+GGG + chr4_2:52196654-52196673 None:intergenic 35.0%
TGAAGAAGGACCTGAAAAAT+AGG + chr4_2:52196655-52196674 None:intergenic 35.0%
TGAAGACATAGGAAAGTCTT+CGG + chr4_2:52196886-52196905 None:intergenic 35.0%
AGAGAAAAATCTGCTTCTCA+AGG - chr4_2:52197017-52197036 Msa0606100:intron 35.0%
! TGGTGATGATGATTTGGATA+TGG - chr4_2:52197040-52197059 Msa0606100:intron 35.0%
TTAAGAGCTCAACTTCAATG+AGG - chr4_2:52197294-52197313 Msa0606100:intron 35.0%
ATGAGGAATTTGAATCCTTC+TGG - chr4_2:52197311-52197330 Msa0606100:CDS 35.0%
GAAAACAAAAACTCACCAGA+AGG + chr4_2:52197329-52197348 None:intergenic 35.0%
CCATGAAGGGAATGATTATT+CGG - chr4_2:52197457-52197476 Msa0606100:intron 35.0%
CTCGATTATACCAGAAATCA+GGG - chr4_2:52197485-52197504 Msa0606100:CDS 35.0%
AATATAGCTTCCCTGATTTC+TGG + chr4_2:52197498-52197517 None:intergenic 35.0%
AAATCAGGGAAGCTATATTC+AGG - chr4_2:52197499-52197518 Msa0606100:CDS 35.0%
ATATTCAGGTGTCTAGTATG+TGG - chr4_2:52197513-52197532 Msa0606100:CDS 35.0%
GTAATTACACGAGTCATTTC+TGG - chr4_2:52197568-52197587 Msa0606100:intron 35.0%
AACAAGTGTCATCGAATTCT+TGG + chr4_2:52197707-52197726 None:intergenic 35.0%
AAGTAAGTCTGTGGCTTATT+TGG - chr4_2:52197739-52197758 Msa0606100:CDS 35.0%
AGCAAAAATCAGAAGGAACA+GGG + chr4_2:52197917-52197936 None:intergenic 35.0%
AAGCAAAAATCAGAAGGAAC+AGG + chr4_2:52197918-52197937 None:intergenic 35.0%
! TTGCCTATGTTTTACTTTGC+AGG + chr4_2:52197973-52197992 None:intergenic 35.0%
GTAAAACATAGGCAAATAGC+TGG - chr4_2:52197978-52197997 Msa0606100:CDS 35.0%
TCAATTTGATCTAGAAGGTG+AGG - chr4_2:52198196-52198215 Msa0606100:intron 35.0%
TCTTAACCTCTTGACAAATG+AGG + chr4_2:52198229-52198248 None:intergenic 35.0%
TAAACAAATTGTGAGGCTTC+AGG - chr4_2:52198454-52198473 Msa0606100:intron 35.0%
! TTTGTTGTATATCAGGTGAC+TGG - chr4_2:52198647-52198666 Msa0606100:CDS 35.0%
GAGCTAGATGATGTAAAGAA+AGG - chr4_2:52199111-52199130 Msa0606100:CDS 35.0%
! ATTTTCTTGCAGCTTTTTGG+GGG - chr4_2:52199213-52199232 Msa0606100:intron 35.0%
! TATACTGTTTCTCCTGTTTC+AGG + chr4_2:52199423-52199442 None:intergenic 35.0%
ACACTAAAAGATCATGGACT+TGG + chr4_2:52199448-52199467 None:intergenic 35.0%
ACAAAATGTCTGACAATGCA+AGG - chr4_2:52199580-52199599 Msa0606100:intron 35.0%
ATATGCAATTCCTCATGCAT+TGG - chr4_2:52199996-52200015 Msa0606100:intron 35.0%
! CAGCAATCCATTTTAAACCT+TGG - chr4_2:52200019-52200038 Msa0606100:intron 35.0%
AAAAAATAGAGGTAAGCCCA+AGG + chr4_2:52200039-52200058 None:intergenic 35.0%
!!! TGGGCTTACCTCTATTTTTT+AGG - chr4_2:52200039-52200058 Msa0606100:intron 35.0%
!!! GGGCTTACCTCTATTTTTTA+GGG - chr4_2:52200040-52200059 Msa0606100:intron 35.0%
TATTGTTTCCCTGCACTATA+AGG - chr4_2:52200297-52200316 Msa0606100:intron 35.0%
CTCATAATCCTTATAGTGCA+GGG + chr4_2:52200308-52200327 None:intergenic 35.0%
ACTATAAGGATTATGAGGTC+TGG - chr4_2:52200311-52200330 Msa0606100:intron 35.0%
CATACTCACTTAGAATGATG+TGG - chr4_2:52200389-52200408 Msa0606100:intron 35.0%
GCTATGTAAAAATAAGGGGT+AGG - chr4_2:52200536-52200555 Msa0606100:CDS 35.0%
!! TATCACCTTTTTGCTACTTC+CGG + chr4_2:52200572-52200591 None:intergenic 35.0%
ATTACGACTTAGTGAAGCAT+TGG - chr4_2:52200733-52200752 Msa0606100:CDS 35.0%
ATAGAGTATAGGGGATTGTT+TGG + chr4_2:52200949-52200968 None:intergenic 35.0%
GGAGGAATACAATAGAGTAT+AGG + chr4_2:52200960-52200979 None:intergenic 35.0%
TCTCATAACTACTGGTGTTT+CGG - chr4_2:52201035-52201054 Msa0606100:CDS 35.0%
ATCATGGAGAAGATGCAAAT+TGG - chr4_2:52201108-52201127 Msa0606100:CDS 35.0%
TCATGGAGAAGATGCAAATT+GGG - chr4_2:52201109-52201128 Msa0606100:CDS 35.0%
AGCAATATGAGAAGCTACAA+TGG + chr4_2:52201705-52201724 None:intergenic 35.0%
ATGTAACTGCGAAATATGGC+GGG + chr4_2:52196439-52196458 None:intergenic 40.0%
GATGTAACTGCGAAATATGG+CGG + chr4_2:52196440-52196459 None:intergenic 40.0%
ATTGTTGGAATCCATTGGAG+TGG + chr4_2:52196551-52196570 None:intergenic 40.0%
! ACTCCAATGGATTCCAACAA+TGG - chr4_2:52196550-52196569 Msa0606100:three_prime_UTR 40.0%
GAACCATTGTTGGAATCCAT+TGG + chr4_2:52196556-52196575 None:intergenic 40.0%
GAAGTGATACGAACCATTGT+TGG + chr4_2:52196566-52196585 None:intergenic 40.0%
!!! TTTTTCAGGTCCTTCTTCAC+CGG - chr4_2:52196656-52196675 Msa0606100:three_prime_UTR 40.0%
GGACTTGAATTGGAATTGTC+CGG + chr4_2:52196678-52196697 None:intergenic 40.0%
GTTGGCAATTGGACTTGAAT+TGG + chr4_2:52196688-52196707 None:intergenic 40.0%
GACTTTCCTATGTCTTCAGA+AGG - chr4_2:52196888-52196907 Msa0606100:intron 40.0%
TTTCCTATGTCTTCAGAAGG+TGG - chr4_2:52196891-52196910 Msa0606100:intron 40.0%
ATGTGAATGATGCGATTCAG+AGG - chr4_2:52196979-52196998 Msa0606100:CDS 40.0%
GAAAAATCTGCTTCTCAAGG+TGG - chr4_2:52197020-52197039 Msa0606100:intron 40.0%
! TCAAGGTGGTGATGATGATT+TGG - chr4_2:52197034-52197053 Msa0606100:intron 40.0%
!!! GGTGCTTGCCATTTTTGATA+TGG - chr4_2:52197202-52197221 Msa0606100:CDS 40.0%
CCGAATAATCATTCCCTTCA+TGG + chr4_2:52197460-52197479 None:intergenic 40.0%
GCTCGATTATACCAGAAATC+AGG - chr4_2:52197484-52197503 Msa0606100:CDS 40.0%
TGAACCTACTGTTTGCTTGA+GGG - chr4_2:52197669-52197688 Msa0606100:CDS 40.0%
GCTCACAAGCAAAAATCAGA+AGG + chr4_2:52197924-52197943 None:intergenic 40.0%
TTTGCTTGTGAGCAAATCAG+TGG - chr4_2:52197931-52197950 Msa0606100:CDS 40.0%
ACTTTGCCTCATTTGTCAAG+AGG - chr4_2:52198220-52198239 Msa0606100:intron 40.0%
TCATGTGACTATTTGGCGTA+AGG - chr4_2:52198357-52198376 Msa0606100:CDS 40.0%
! TTGGCGTAAGGTTTTTCACT+TGG - chr4_2:52198369-52198388 Msa0606100:CDS 40.0%
AATAGCAAGCTAACAGTGTG+AGG + chr4_2:52198512-52198531 None:intergenic 40.0%
!! CTTGCTATTGCATGACAAAC+TGG - chr4_2:52198523-52198542 Msa0606100:intron 40.0%
ATCAGGTGACTGGTATATAC+AGG - chr4_2:52198657-52198676 Msa0606100:CDS 40.0%
TCAGGTGACTGGTATATACA+GGG - chr4_2:52198658-52198677 Msa0606100:CDS 40.0%
GACTTAACAGTTCTCTGAGT+TGG + chr4_2:52198704-52198723 None:intergenic 40.0%
TCAGACAAGCATCAATTAGC+AGG + chr4_2:52199006-52199025 None:intergenic 40.0%
GTCAGCCTTTCATAGATATC+TGG + chr4_2:52199066-52199085 None:intergenic 40.0%
AAAGAAAGGTCTTCTTTGCC+AGG - chr4_2:52199125-52199144 Msa0606100:CDS 40.0%
AGCTAGAAAGATGTGTTACC+TGG + chr4_2:52199146-52199165 None:intergenic 40.0%
!! AATGCTTTGAAGTTGGCATC+TGG - chr4_2:52199237-52199256 Msa0606100:intron 40.0%
ATACACAAACTTTCTCCACG+TGG - chr4_2:52199336-52199355 Msa0606100:CDS 40.0%
TTCTCCTGTTTCAGGATCTT+TGG + chr4_2:52199415-52199434 None:intergenic 40.0%
! AATCTTCAGGTTCTTGAGAG+TGG - chr4_2:52199510-52199529 Msa0606100:CDS 40.0%
CACTTGTCTCTGTTTATTCC+AGG - chr4_2:52199758-52199777 Msa0606100:CDS 40.0%
TCTCTGTTTATTCCAGGTGA+TGG - chr4_2:52199764-52199783 Msa0606100:CDS 40.0%
ACTGTTTCAATAGCAAAGGC+AGG - chr4_2:52199795-52199814 Msa0606100:intron 40.0%
TTATTGCTTCCCTCAATGCA+AGG - chr4_2:52199820-52199839 Msa0606100:intron 40.0%
GATTATATCGTGAACCGCTA+GGG + chr4_2:52199869-52199888 None:intergenic 40.0%
TGTTGTCAATGACAGACAAG+CGG + chr4_2:52199893-52199912 None:intergenic 40.0%
ACTAACCTGGACAAAAGAGT+GGG + chr4_2:52199927-52199946 None:intergenic 40.0%
AACTAACCTGGACAAAAGAG+TGG + chr4_2:52199928-52199947 None:intergenic 40.0%
!! CTTTTGTCCAGGTTAGTTGT+TGG - chr4_2:52199930-52199949 Msa0606100:intron 40.0%
CTTATGTCCAACAACTAACC+TGG + chr4_2:52199940-52199959 None:intergenic 40.0%
GGTAAGCCCAAGGTTTAAAA+TGG + chr4_2:52200029-52200048 None:intergenic 40.0%
TCTCCTTATCAAACCTAGTG+TGG - chr4_2:52200104-52200123 Msa0606100:intron 40.0%
CTCCTTATCAAACCTAGTGT+GGG - chr4_2:52200105-52200124 Msa0606100:intron 40.0%
TACCCACACTAGGTTTGATA+AGG + chr4_2:52200110-52200129 None:intergenic 40.0%
TTATCAAACCTAGTGTGGGT+AGG - chr4_2:52200109-52200128 Msa0606100:intron 40.0%
TATCAAACCTAGTGTGGGTA+GGG - chr4_2:52200110-52200129 Msa0606100:intron 40.0%
!!! GAGTTGATCTTTTTTCTGGC+AGG - chr4_2:52200209-52200228 Msa0606100:intron 40.0%
CAATATGTTTGGCAAGTCGT+CGG + chr4_2:52200282-52200301 None:intergenic 40.0%
GTGCAGGGAAACAATATGTT+TGG + chr4_2:52200293-52200312 None:intergenic 40.0%
CCTCATAATCCTTATAGTGC+AGG + chr4_2:52200309-52200328 None:intergenic 40.0%
CCTGCACTATAAGGATTATG+AGG - chr4_2:52200306-52200325 Msa0606100:intron 40.0%
TGCTCCATGTTCTGCAATTA+TGG + chr4_2:52200415-52200434 None:intergenic 40.0%
ATAATTGCAGAACATGGAGC+AGG - chr4_2:52200414-52200433 Msa0606100:intron 40.0%
CAGCTTCATCTGATAGTTGT+GGG + chr4_2:52200498-52200517 None:intergenic 40.0%
GCTGCTGATGAATTGATTAC+AGG - chr4_2:52200514-52200533 Msa0606100:CDS 40.0%
ATTCTCCGGAAGTAGCAAAA+AGG - chr4_2:52200564-52200583 Msa0606100:intron 40.0%
AATAGACTCTCAATCTGCCT+TGG + chr4_2:52200716-52200735 None:intergenic 40.0%
ACAGGTCGAAAAACATGATG+TGG - chr4_2:52200855-52200874 Msa0606100:intron 40.0%
GTTTGGATAACTACCAGTTC+TGG + chr4_2:52200932-52200951 None:intergenic 40.0%
CTTCACAGGAACTATTGACA+TGG - chr4_2:52201011-52201030 Msa0606100:CDS 40.0%
GACATGGATCTCATAACTAC+TGG - chr4_2:52201027-52201046 Msa0606100:CDS 40.0%
CATGGAGAAGATGCAAATTG+GGG - chr4_2:52201110-52201129 Msa0606100:CDS 40.0%
ATGGAGAAGATGCAAATTGG+GGG - chr4_2:52201111-52201130 Msa0606100:CDS 40.0%
TAATACCTCCAATAACCGCA+TGG + chr4_2:52201142-52201161 None:intergenic 40.0%
TAAGATGAATTTCGCTGCCA+GGG + chr4_2:52201270-52201289 None:intergenic 40.0%
TTAAGATGAATTTCGCTGCC+AGG + chr4_2:52201271-52201290 None:intergenic 40.0%
AGTTCACTTATCCTTAGGGA+TGG + chr4_2:52201345-52201364 None:intergenic 40.0%
!!! CAGGGTCATCATTGGTTTTA+GGG - chr4_2:52201476-52201495 Msa0606100:CDS 40.0%
!!! AGGGTCATCATTGGTTTTAG+GGG - chr4_2:52201477-52201496 Msa0606100:CDS 40.0%
TGTAACTGCGAAATATGGCG+GGG + chr4_2:52196438-52196457 None:intergenic 45.0%
TGAGGAATGTGAAGTGAGTG+AGG + chr4_2:52196480-52196499 None:intergenic 45.0%
GATTTGTGAAAACGCGGGAA+TGG + chr4_2:52196514-52196533 None:intergenic 45.0%
CCATGGATTTGTGAAAACGC+GGG + chr4_2:52196519-52196538 None:intergenic 45.0%
GCCATGGATTTGTGAAAACG+CGG + chr4_2:52196520-52196539 None:intergenic 45.0%
GGAATCCATTGGAGTGGAAT+CGG + chr4_2:52196545-52196564 None:intergenic 45.0%
TTGGAATTGTCCGGTGAAGA+AGG + chr4_2:52196669-52196688 None:intergenic 45.0%
ATGGAGTGATTGATTGACGG+CGG + chr4_2:52196737-52196756 None:intergenic 45.0%
CGGATGGAGTGATTGATTGA+CGG + chr4_2:52196740-52196759 None:intergenic 45.0%
CGTCAATCAATCACTCCATC+CGG - chr4_2:52196738-52196757 Msa0606100:three_prime_UTR 45.0%
AGACATAGGAAAGTCTTCGG+AGG + chr4_2:52196883-52196902 None:intergenic 45.0%
! TCACCACCTTCTGAAGACAT+AGG + chr4_2:52196897-52196916 None:intergenic 45.0%
ATGTCTTCAGAAGGTGGTGA+CGG - chr4_2:52196897-52196916 Msa0606100:intron 45.0%
TTAGTCCCCCAAACGTAAGT+CGG + chr4_2:52196945-52196964 None:intergenic 45.0%
! TAAGATGGTGAGGTATCCTC+TGG - chr4_2:52197178-52197197 Msa0606100:CDS 45.0%
TGAGAGGATGGTATCCATGA+AGG - chr4_2:52197443-52197462 Msa0606100:intron 45.0%
GAGAGGATGGTATCCATGAA+GGG - chr4_2:52197444-52197463 Msa0606100:intron 45.0%
GTGTAATTACCTCTCTCCAC+CGG + chr4_2:52197558-52197577 None:intergenic 45.0%
CTGAACCTACTGTTTGCTTG+AGG - chr4_2:52197668-52197687 Msa0606100:CDS 45.0%
TCTTCCCTCAAGCAAACAGT+AGG + chr4_2:52197676-52197695 None:intergenic 45.0%
AACCGATGCAAGTAAGTCTG+TGG - chr4_2:52197730-52197749 Msa0606100:CDS 45.0%
AGCCACAGACTTACTTGCAT+CGG + chr4_2:52197735-52197754 None:intergenic 45.0%
GACACAATTAAACTGCCAGC+AGG + chr4_2:52198070-52198089 None:intergenic 45.0%
! GATAAGTTGGATGATGGCCA+TGG - chr4_2:52198301-52198320 Msa0606100:CDS 45.0%
GCTATTGCATGACAAACTGG+TGG - chr4_2:52198526-52198545 Msa0606100:intron 45.0%
! CATGACAAACTGGTGGATAC+TGG - chr4_2:52198533-52198552 Msa0606100:intron 45.0%
TATACAGGGCTATGAGTGTC+AGG - chr4_2:52198672-52198691 Msa0606100:CDS 45.0%
ATACAGGGCTATGAGTGTCA+GGG - chr4_2:52198673-52198692 Msa0606100:CDS 45.0%
GATGCTATGGAGGTTGACAA+TGG - chr4_2:52198890-52198909 Msa0606100:CDS 45.0%
TTGATGCTTGTCTGAGTCTC+AGG - chr4_2:52199011-52199030 Msa0606100:intron 45.0%
TGAAAGGCTGACAAAGTCAC+TGG - chr4_2:52199074-52199093 Msa0606100:intron 45.0%
! TCATCTAGCTCCCAGATGTT+TGG + chr4_2:52199102-52199121 None:intergenic 45.0%
!! ATTCTCCTTGTTGGTGATCC+TGG - chr4_2:52199285-52199304 Msa0606100:intron 45.0%
TTGTACCAGGATCACCAACA+AGG + chr4_2:52199293-52199312 None:intergenic 45.0%
TGGCATTTACACCAGTGGAA+GGG - chr4_2:52199356-52199375 Msa0606100:CDS 45.0%
CATCAATGCAGCAGATACCT+CGG + chr4_2:52199554-52199573 None:intergenic 45.0%
!! CAGTTTGTTGTTCCATCACC+TGG + chr4_2:52199779-52199798 None:intergenic 45.0%
TTCCCTCAATGCAAGGACTT+CGG - chr4_2:52199827-52199846 Msa0606100:intron 45.0%
GGATTATATCGTGAACCGCT+AGG + chr4_2:52199870-52199889 None:intergenic 45.0%
TTGTCAATGACAGACAAGCG+GGG + chr4_2:52199891-52199910 None:intergenic 45.0%
GTTGTCAATGACAGACAAGC+GGG + chr4_2:52199892-52199911 None:intergenic 45.0%
ATCAAACCTAGTGTGGGTAG+GGG - chr4_2:52200111-52200130 Msa0606100:intron 45.0%
GTGGCCATAATTGCAGAACA+TGG - chr4_2:52200408-52200427 Msa0606100:intron 45.0%
TTGTGGGTGTATGTGCTTTC+GGG + chr4_2:52200482-52200501 None:intergenic 45.0%
GTTGTGGGTGTATGTGCTTT+CGG + chr4_2:52200483-52200502 None:intergenic 45.0%
GCAGCTTCATCTGATAGTTG+TGG + chr4_2:52200499-52200518 None:intergenic 45.0%
AGGTAATAACGGCAACTCCA+AGG - chr4_2:52200696-52200715 Msa0606100:CDS 45.0%
!! GACTTAGTGAAGCATTGGCT+CGG - chr4_2:52200738-52200757 Msa0606100:CDS 45.0%
TCGGATTCGCTTCTCAGAAT+CGG - chr4_2:52200757-52200776 Msa0606100:CDS 45.0%
! ATCGGTTAGTTGAGCTTGCT+TGG - chr4_2:52200775-52200794 Msa0606100:CDS 45.0%
GGTCGAAAAACATGATGTGG+TGG - chr4_2:52200858-52200877 Msa0606100:intron 45.0%
CGAAAAACATGATGTGGTGG+AGG - chr4_2:52200861-52200880 Msa0606100:intron 45.0%
!! ATGATGTGGTGGAGGCATTT+CGG - chr4_2:52200869-52200888 Msa0606100:intron 45.0%
TGCAATGCAGCAATCTGCAA+TGG - chr4_2:52200903-52200922 Msa0606100:intron 45.0%
TCTGCAATGGATACCAGAAC+TGG - chr4_2:52200916-52200935 Msa0606100:CDS 45.0%
AAGGATGAGGCGAGAAAGTT+TGG - chr4_2:52201065-52201084 Msa0606100:CDS 45.0%
AGACACTCGCAACATGATCA+TGG - chr4_2:52201092-52201111 Msa0606100:CDS 45.0%
GAACTAAAGAATCAGAGCCC+TGG - chr4_2:52201250-52201269 Msa0606100:CDS 45.0%
GATGGAGCAAGCATAAACAC+TGG + chr4_2:52201327-52201346 None:intergenic 45.0%
TTATGCTTGCTCCATCCCTA+AGG - chr4_2:52201331-52201350 Msa0606100:CDS 45.0%
CATGGAAACAAATCCTTCGC+TGG + chr4_2:52201419-52201438 None:intergenic 45.0%
! CAGCGAAGGATTTGTTTCCA+TGG - chr4_2:52201417-52201436 Msa0606100:CDS 45.0%
! GAAGGATTTGTTTCCATGGC+TGG - chr4_2:52201421-52201440 Msa0606100:CDS 45.0%
! TTTTACACTGTCACCAGCCA+TGG + chr4_2:52201437-52201456 None:intergenic 45.0%
AGAACATGATACGATGAGGC+AGG - chr4_2:52201457-52201476 Msa0606100:CDS 45.0%
GAACATGATACGATGAGGCA+GGG - chr4_2:52201458-52201477 Msa0606100:CDS 45.0%
!!! GCAGGGTCATCATTGGTTTT+AGG - chr4_2:52201475-52201494 Msa0606100:CDS 45.0%
GTAGACAAAGACAGCCTTTC+AGG + chr4_2:52201683-52201702 None:intergenic 45.0%
! CTCAGTCCAGAAAGTTCTGG+CGG - chr4_2:52196395-52196414 Msa0606100:three_prime_UTR 50.0%
! TCAGTCCAGAAAGTTCTGGC+GGG - chr4_2:52196396-52196415 Msa0606100:three_prime_UTR 50.0%
! GTTTTCCCGCCAGAACTTTC+TGG + chr4_2:52196404-52196423 None:intergenic 50.0%
! CCCGCGTTTTCACAAATCCA+TGG - chr4_2:52196516-52196535 Msa0606100:three_prime_UTR 50.0%
!! GAGGAGTAGGTGTTGGCAAT+TGG + chr4_2:52196699-52196718 None:intergenic 50.0%
! TCTGTTCGGTTGAGGTGTTC+CGG + chr4_2:52196760-52196779 None:intergenic 50.0%
AAGCGAGATCTGTTCGGTTG+AGG + chr4_2:52196768-52196787 None:intergenic 50.0%
GAAGCGAAGCGAGATCTGTT+CGG + chr4_2:52196774-52196793 None:intergenic 50.0%
AAGTCTTCGGAGGTGGAAGT+TGG + chr4_2:52196873-52196892 None:intergenic 50.0%
CATAGGAAAGTCTTCGGAGG+TGG + chr4_2:52196880-52196899 None:intergenic 50.0%
TTGGGGGACTAACATTAGCG+TGG - chr4_2:52196953-52196972 Msa0606100:CDS 50.0%
AAAATGGCAAGCACCTCCAG+AGG + chr4_2:52197197-52197216 None:intergenic 50.0%
ATGTGGATTCTGCTCTGACC+CGG - chr4_2:52197530-52197549 Msa0606100:intron 50.0%
CATAGGCAAATAGCTGGACG+TGG - chr4_2:52197984-52198003 Msa0606100:CDS 50.0%
ACACCTGACGAGATACCTGA+AGG - chr4_2:52198479-52198498 Msa0606100:intron 50.0%
AAAGCCAGGTGACAGAGTTG+AGG - chr4_2:52198556-52198575 Msa0606100:intron 50.0%
TAGCATCCTCAACCAGCATC+CGG + chr4_2:52198877-52198896 None:intergenic 50.0%
! GATGCTGGTTGAGGATGCTA+TGG - chr4_2:52198877-52198896 Msa0606100:CDS 50.0%
TATGGAGGTTGACAATGGCC+AGG - chr4_2:52198895-52198914 Msa0606100:CDS 50.0%
ATGGAGGTTGACAATGGCCA+GGG - chr4_2:52198896-52198915 Msa0606100:CDS 50.0%
CTTCTTCTGGATTTCTGCCC+TGG + chr4_2:52198916-52198935 None:intergenic 50.0%
ATGCTTGTCTGAGTCTCAGG+TGG - chr4_2:52199014-52199033 Msa0606100:intron 50.0%
GTCTCAGGTGGCTAAACTGA+AGG - chr4_2:52199026-52199045 Msa0606100:intron 50.0%
!! TGGGGGCAATGCTTTGAAGT+TGG - chr4_2:52199230-52199249 Msa0606100:intron 50.0%
GTGGCATTTACACCAGTGGA+AGG - chr4_2:52199355-52199374 Msa0606100:CDS 50.0%
GGCATTTACACCAGTGGAAG+GGG - chr4_2:52199357-52199376 Msa0606100:CDS 50.0%
GCATTTACACCAGTGGAAGG+GGG - chr4_2:52199358-52199377 Msa0606100:CDS 50.0%
GGTTGGATTGACTGCTTACG+TGG - chr4_2:52199389-52199408 Msa0606100:CDS 50.0%
GTGGCCAAAGATCCTGAAAC+AGG - chr4_2:52199408-52199427 Msa0606100:intron 50.0%
ACCTCGGTCGCTCAAAACTA+GGG + chr4_2:52199538-52199557 None:intergenic 50.0%
TACCTCGGTCGCTCAAAACT+AGG + chr4_2:52199539-52199558 None:intergenic 50.0%
! TGCAAGGAGCATGTTACACG+AGG - chr4_2:52199596-52199615 Msa0606100:intron 50.0%
! AGGAGCATGTTACACGAGGT+TGG - chr4_2:52199600-52199619 Msa0606100:intron 50.0%
CACCGAAGTCCTTGCATTGA+GGG + chr4_2:52199832-52199851 None:intergenic 50.0%
ACACCGAAGTCCTTGCATTG+AGG + chr4_2:52199833-52199852 None:intergenic 50.0%
! CAATGCAAGGACTTCGGTGT+TGG - chr4_2:52199833-52199852 Msa0606100:intron 50.0%
TGGACAAAAGAGTGGGAGGA+AGG + chr4_2:52199920-52199939 None:intergenic 50.0%
! TTCCTCCCACTCTTTTGTCC+AGG - chr4_2:52199919-52199938 Msa0606100:intron 50.0%
AACCTGGACAAAAGAGTGGG+AGG + chr4_2:52199924-52199943 None:intergenic 50.0%
TGGATTGCTGCCAATGCATG+AGG + chr4_2:52200009-52200028 None:intergenic 50.0%
ATGTTTGGCAAGTCGTCGGT+CGG + chr4_2:52200278-52200297 None:intergenic 50.0%
GAACATGGAGCAGGATGTGT+TGG - chr4_2:52200423-52200442 Msa0606100:intron 50.0%
AGGGGTAGGGGAAAATTCTC+CGG - chr4_2:52200550-52200569 Msa0606100:CDS 50.0%
TTTCGGCAAGCGAAAGGATG+AGG - chr4_2:52201052-52201071 Msa0606100:CDS 50.0%
AAATTGGGGGACGTTCCATG+CGG - chr4_2:52201124-52201143 Msa0606100:CDS 50.0%
ACGTTCCATGCGGTTATTGG+AGG - chr4_2:52201134-52201153 Msa0606100:CDS 50.0%
TGGAGTGGAATCGGAAGCCA+TGG + chr4_2:52196536-52196555 None:intergenic 55.0%
GGCTTCCGATTCCACTCCAA+TGG - chr4_2:52196537-52196556 Msa0606100:three_prime_UTR 55.0%
TGATTGATTGACGGCGGCGA+CGG + chr4_2:52196731-52196750 None:intergenic 55.0%
! TTCGGTTGAGGTGTTCCGGA+TGG + chr4_2:52196756-52196775 None:intergenic 55.0%
!! AAGTTGGTGTGGCAGGGACA+CGG + chr4_2:52196857-52196876 None:intergenic 55.0%
!! AGGTGGAAGTTGGTGTGGCA+GGG + chr4_2:52196863-52196882 None:intergenic 55.0%
!! TTCGGAGGTGGAAGTTGGTG+TGG + chr4_2:52196868-52196887 None:intergenic 55.0%
!! AGGTGGTGACGGTTACGACA+TGG - chr4_2:52196908-52196927 Msa0606100:intron 55.0%
GGTTACGACATGGATGACGC+CGG - chr4_2:52196918-52196937 Msa0606100:intron 55.0%
GGGGACTAACATTAGCGTGG+AGG - chr4_2:52196956-52196975 Msa0606100:CDS 55.0%
! GATGGTGAGGTATCCTCTGG+AGG - chr4_2:52197181-52197200 Msa0606100:CDS 55.0%
ATTCTGCTCTGACCCGGTTC+CGG - chr4_2:52197536-52197555 Msa0606100:intron 55.0%
TTACCTCTCTCCACCGGAAC+CGG + chr4_2:52197552-52197571 None:intergenic 55.0%
CCTCCTTCAGGTATCTCGTC+AGG + chr4_2:52198485-52198504 None:intergenic 55.0%
CCTGACGAGATACCTGAAGG+AGG - chr4_2:52198482-52198501 Msa0606100:intron 55.0%
! CTGGTGGATACTGGAAAGCC+AGG - chr4_2:52198542-52198561 Msa0606100:intron 55.0%
CTCACCTCAACTCTGTCACC+TGG + chr4_2:52198563-52198582 None:intergenic 55.0%
AGGGCTATGAGTGTCAGGGT+AGG - chr4_2:52198677-52198696 Msa0606100:CDS 55.0%
GACATCAAAGTCCCGGATGC+TGG - chr4_2:52198862-52198881 Msa0606100:CDS 55.0%
! AAAGTCCCGGATGCTGGTTG+AGG - chr4_2:52198868-52198887 Msa0606100:CDS 55.0%
AGCATCCTCAACCAGCATCC+GGG + chr4_2:52198876-52198895 None:intergenic 55.0%
GCTGGTTGAGGATGCTATGG+AGG - chr4_2:52198880-52198899 Msa0606100:CDS 55.0%
AGTCACTGGCGCCAAACATC+TGG - chr4_2:52199088-52199107 Msa0606100:intron 55.0%
GTCACTGGCGCCAAACATCT+GGG - chr4_2:52199089-52199108 Msa0606100:intron 55.0%
! AGCTGCGACTTGCTTGTACC+AGG + chr4_2:52199306-52199325 None:intergenic 55.0%
CCACTGGTGTAAATGCCACG+TGG + chr4_2:52199354-52199373 None:intergenic 55.0%
CCACGTGGCATTTACACCAG+TGG - chr4_2:52199351-52199370 Msa0606100:CDS 55.0%
!! TTGGCTTGCGCAAACCCTAG+CGG - chr4_2:52199852-52199871 Msa0606100:intron 55.0%
AACCTAGTGTGGGTAGGGGT+TGG - chr4_2:52200115-52200134 Msa0606100:intron 55.0%
CTGGTGTTTCGGCAAGCGAA+AGG - chr4_2:52201046-52201065 Msa0606100:CDS 55.0%
GGGACGTTCCATGCGGTTAT+TGG - chr4_2:52201131-52201150 Msa0606100:CDS 55.0%
CGATGAGGCAGGGTCATCAT+TGG - chr4_2:52201468-52201487 Msa0606100:CDS 55.0%
GGGAGTTGGAGTGGCATCAG+AGG + chr4_2:52196796-52196815 None:intergenic 60.0%
!! GAGGTGGAAGTTGGTGTGGC+AGG + chr4_2:52196864-52196883 None:intergenic 60.0%
ACGCCGGTCCGACTTACGTT+TGG - chr4_2:52196934-52196953 Msa0606100:intron 60.0%
CGCCGGTCCGACTTACGTTT+GGG - chr4_2:52196935-52196954 Msa0606100:intron 60.0%
GCCGGTCCGACTTACGTTTG+GGG - chr4_2:52196936-52196955 Msa0606100:intron 60.0%
CCCCCAAACGTAAGTCGGAC+CGG + chr4_2:52196940-52196959 None:intergenic 60.0%
CCGGTCCGACTTACGTTTGG+GGG - chr4_2:52196937-52196956 Msa0606100:intron 60.0%
TACCTCTCTCCACCGGAACC+GGG + chr4_2:52197551-52197570 None:intergenic 60.0%
! GTGTGAGGCGTTCCTCCTTC+AGG + chr4_2:52198497-52198516 None:intergenic 60.0%
!! GCATCTGGCGCTAGCTTTCG+TGG - chr4_2:52199252-52199271 Msa0606100:intron 60.0%
!!! GCCCTAGTTTTGAGCGACCG+AGG - chr4_2:52199534-52199553 Msa0606100:CDS 60.0%
TGCCAACCCCTACCCACACT+AGG + chr4_2:52200120-52200139 None:intergenic 60.0%
!! GGTGGAGGCATTTCGGCTTC+TGG - chr4_2:52200876-52200895 Msa0606100:intron 60.0%
GTTGCTACTCTCGCCAGCGA+AGG - chr4_2:52201403-52201422 Msa0606100:CDS 60.0%
GCCAACACCTACTCCTCCCC+CGG - chr4_2:52196702-52196721 Msa0606100:three_prime_UTR 65.0%
TTGATTGACGGCGGCGACGG+CGG + chr4_2:52196728-52196747 None:intergenic 65.0%
! GTGACGGGAGGGAGTTGGAG+TGG + chr4_2:52196805-52196824 None:intergenic 65.0%
TTGGTGTGGCAGGGACACGG+CGG + chr4_2:52196854-52196873 None:intergenic 65.0%
CAGTGGAAGGGGGAGCTCAG+CGG - chr4_2:52199368-52199387 Msa0606100:CDS 65.0%
GCCGGGGGAGGAGTAGGTGT+TGG + chr4_2:52196706-52196725 None:intergenic 70.0%
!! CGACGGTGACGGGAGGGAGT+TGG + chr4_2:52196810-52196829 None:intergenic 70.0%
ACTCCCTCCCGTCACCGTCG+CGG - chr4_2:52196810-52196829 Msa0606100:CDS 70.0%
TACCGCCACCGCGACGGTGA+CGG + chr4_2:52196821-52196840 None:intergenic 70.0%
AGGGGATACCGCCACCGCGA+CGG + chr4_2:52196827-52196846 None:intergenic 70.0%
CTGCTCTGACCCGGTTCCGG+TGG - chr4_2:52197539-52197558 Msa0606100:intron 70.0%
GACCCGGTTCCGGTGGAGAG+AGG - chr4_2:52197546-52197565 Msa0606100:intron 70.0%
CGCTGAGCTCCCCCTTCCAC+TGG + chr4_2:52199370-52199389 None:intergenic 70.0%
GGAAGGGGGAGCTCAGCGGT+TGG - chr4_2:52199372-52199391 Msa0606100:CDS 70.0%
!! CCACCGCGACGGTGACGGGA+GGG + chr4_2:52196816-52196835 None:intergenic 75.0%
TCCCGTCACCGTCGCGGTGG+CGG - chr4_2:52196816-52196835 Msa0606100:CDS 75.0%
ACCGCCACCGCGACGGTGAC+GGG + chr4_2:52196820-52196839 None:intergenic 75.0%
! CGCGGTGGCGGTATCCCCTC+CGG - chr4_2:52196828-52196847 Msa0606100:CDS 75.0%
TGTGGCAGGGACACGGCGGC+CGG + chr4_2:52196850-52196869 None:intergenic 75.0%
! ACGGCGGCCGGGGGAGGAGT+AGG + chr4_2:52196712-52196731 None:intergenic 80.0%
! TTGACGGCGGCGACGGCGGC+CGG + chr4_2:52196724-52196743 None:intergenic 80.0%
! CCCTCCCGTCACCGTCGCGG+TGG - chr4_2:52196813-52196832 Msa0606100:CDS 80.0%
!!! GCCACCGCGACGGTGACGGG+AGG + chr4_2:52196817-52196836 None:intergenic 80.0%
! CAGGGACACGGCGGCCGGAG+GGG + chr4_2:52196845-52196864 None:intergenic 80.0%
! GCAGGGACACGGCGGCCGGA+GGG + chr4_2:52196846-52196865 None:intergenic 80.0%
! TGACGGCGGCGACGGCGGCC+GGG + chr4_2:52196723-52196742 None:intergenic 85.0%
! GGCAGGGACACGGCGGCCGG+AGG + chr4_2:52196847-52196866 None:intergenic 85.0%
! ACGGCGGCGACGGCGGCCGG+GGG + chr4_2:52196721-52196740 None:intergenic 90.0%
! GACGGCGGCGACGGCGGCCG+GGG + chr4_2:52196722-52196741 None:intergenic 90.0%
! GCGGCGACGGCGGCCGGGGG+AGG + chr4_2:52196718-52196737 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 52196394 52201847 52196394 ID=Msa0606100;Name=Msa0606100
chr4_2 mRNA 52196394 52201847 52196394 ID=Msa0606100-mRNA-1;Parent=Msa0606100;Name=Msa0606100-mRNA-1;_AED=0.11;_eAED=0.11;_QI=141|1|1|1|1|1|18|382|838
chr4_2 exon 52196394 52196850 52196394 ID=Msa0606100-mRNA-1:exon:12694;Parent=Msa0606100-mRNA-1
chr4_2 exon 52196947 52197000 52196947 ID=Msa0606100-mRNA-1:exon:12693;Parent=Msa0606100-mRNA-1
chr4_2 exon 52197086 52197222 52197086 ID=Msa0606100-mRNA-1:exon:12692;Parent=Msa0606100-mRNA-1
chr4_2 exon 52197304 52197382 52197304 ID=Msa0606100-mRNA-1:exon:12691;Parent=Msa0606100-mRNA-1
chr4_2 exon 52197463 52197543 52197463 ID=Msa0606100-mRNA-1:exon:12690;Parent=Msa0606100-mRNA-1
chr4_2 exon 52197656 52197817 52197656 ID=Msa0606100-mRNA-1:exon:12689;Parent=Msa0606100-mRNA-1
chr4_2 exon 52197914 52198010 52197914 ID=Msa0606100-mRNA-1:exon:12688;Parent=Msa0606100-mRNA-1
chr4_2 exon 52198301 52198461 52198301 ID=Msa0606100-mRNA-1:exon:12687;Parent=Msa0606100-mRNA-1
chr4_2 exon 52198624 52198722 52198624 ID=Msa0606100-mRNA-1:exon:12686;Parent=Msa0606100-mRNA-1
chr4_2 exon 52198804 52199016 52198804 ID=Msa0606100-mRNA-1:exon:12685;Parent=Msa0606100-mRNA-1
chr4_2 exon 52199095 52199208 52199095 ID=Msa0606100-mRNA-1:exon:12684;Parent=Msa0606100-mRNA-1
chr4_2 exon 52199286 52199408 52199286 ID=Msa0606100-mRNA-1:exon:12683;Parent=Msa0606100-mRNA-1
chr4_2 exon 52199508 52199579 52199508 ID=Msa0606100-mRNA-1:exon:12682;Parent=Msa0606100-mRNA-1
chr4_2 exon 52199664 52199796 52199664 ID=Msa0606100-mRNA-1:exon:12681;Parent=Msa0606100-mRNA-1
chr4_2 exon 52200501 52200582 52200501 ID=Msa0606100-mRNA-1:exon:12680;Parent=Msa0606100-mRNA-1
chr4_2 exon 52200674 52200802 52200674 ID=Msa0606100-mRNA-1:exon:12679;Parent=Msa0606100-mRNA-1
chr4_2 exon 52200909 52201577 52200909 ID=Msa0606100-mRNA-1:exon:12678;Parent=Msa0606100-mRNA-1
chr4_2 exon 52201670 52201847 52201670 ID=Msa0606100-mRNA-1:exon:12677;Parent=Msa0606100-mRNA-1
chr4_2 five_prime_UTR 52201707 52201847 52201707 ID=Msa0606100-mRNA-1:five_prime_utr;Parent=Msa0606100-mRNA-1
chr4_2 CDS 52201670 52201706 52201670 ID=Msa0606100-mRNA-1:cds;Parent=Msa0606100-mRNA-1
chr4_2 CDS 52200909 52201577 52200909 ID=Msa0606100-mRNA-1:cds;Parent=Msa0606100-mRNA-1
chr4_2 CDS 52200674 52200802 52200674 ID=Msa0606100-mRNA-1:cds;Parent=Msa0606100-mRNA-1
chr4_2 CDS 52200501 52200582 52200501 ID=Msa0606100-mRNA-1:cds;Parent=Msa0606100-mRNA-1
chr4_2 CDS 52199664 52199796 52199664 ID=Msa0606100-mRNA-1:cds;Parent=Msa0606100-mRNA-1
chr4_2 CDS 52199508 52199579 52199508 ID=Msa0606100-mRNA-1:cds;Parent=Msa0606100-mRNA-1
chr4_2 CDS 52199286 52199408 52199286 ID=Msa0606100-mRNA-1:cds;Parent=Msa0606100-mRNA-1
chr4_2 CDS 52199095 52199208 52199095 ID=Msa0606100-mRNA-1:cds;Parent=Msa0606100-mRNA-1
chr4_2 CDS 52198804 52199016 52198804 ID=Msa0606100-mRNA-1:cds;Parent=Msa0606100-mRNA-1
chr4_2 CDS 52198624 52198722 52198624 ID=Msa0606100-mRNA-1:cds;Parent=Msa0606100-mRNA-1
chr4_2 CDS 52198301 52198461 52198301 ID=Msa0606100-mRNA-1:cds;Parent=Msa0606100-mRNA-1
chr4_2 CDS 52197914 52198010 52197914 ID=Msa0606100-mRNA-1:cds;Parent=Msa0606100-mRNA-1
chr4_2 CDS 52197656 52197817 52197656 ID=Msa0606100-mRNA-1:cds;Parent=Msa0606100-mRNA-1
chr4_2 CDS 52197463 52197543 52197463 ID=Msa0606100-mRNA-1:cds;Parent=Msa0606100-mRNA-1
chr4_2 CDS 52197304 52197382 52197304 ID=Msa0606100-mRNA-1:cds;Parent=Msa0606100-mRNA-1
chr4_2 CDS 52197086 52197222 52197086 ID=Msa0606100-mRNA-1:cds;Parent=Msa0606100-mRNA-1
chr4_2 CDS 52196947 52197000 52196947 ID=Msa0606100-mRNA-1:cds;Parent=Msa0606100-mRNA-1
chr4_2 CDS 52196776 52196850 52196776 ID=Msa0606100-mRNA-1:cds;Parent=Msa0606100-mRNA-1
chr4_2 three_prime_UTR 52196394 52196775 52196394 ID=Msa0606100-mRNA-1:three_prime_utr;Parent=Msa0606100-mRNA-1
Gene Sequence

>Msa0606100

ATGGCTTCCGATTCCACTCCAATGGATTCCAACAATGGTCCTTCTTCACCGGACAATTCCAATTCAAGTCCAATTGCCAACACCTACTCCTCCCCCGGCCGCCGTCGCCGCCGTCAATCAATCACTCCATCCGGAACACCTCAACCGAACAGATCTCGCTTCGCTTCCTCTGATGCCACTCCAACTCCCTCCCGTCACCGTCGCGGTGGCGGTATCCCCTCCGGCCGCCGTGTCCCTGCCACACCAACTTCCACCTCCGAAGACTTTCCTATGTCTTCAGAAGGTGGTGACGGTTACGACATGGATGACGCCGGTCCGACTTACGTTTGGGGGACTAACATTAGCGTGGAGGATGTGAATGATGCGATTCAGAGGTTTTTGAAGCATTTTAGAGAAAAATCTGCTTCTCAAGGTGGTGATGATGATTTGGATATGGATTTGGATATTGAAGGGAAGTATGAGAAATTGATCAAACAGGTTATTGAATTGGAAGGTGAGTCTATTGATGTTGATGCACGTGATGTGTTTGATCACGATCACGAATTGTATAGTAAGATGGTGAGGTATCCTCTGGAGGTGCTTGCCATTTTTGATATGGTTTTGATGAACTTGGTTACTAGGATGAACCCTATGTTTGAAAAGCATGTTCAAACTAGGATTTTTAATCTTAAGAGCTCAACTTCAATGAGGAATTTGAATCCTTCTGATATTGAGAGGATGGTATCCATGAAGGGAATGATTATTCGGTGTAGCTCGATTATACCAGAAATCAGGGAAGCTATATTCAGGTGTCTAGTATGTGGATTCTGCTCTGACCCGGTTCCGGTGGAGAGAGGACGAATTGCTGAACCTACTGTTTGCTTGAGGGAAGAGTGTCAGTCCAAGAATTCGATGACACTTGTTCACAACCGATGCAAGTTTACTGATAAACAAATTGTGAGGCTTCAGGAGACACCTGACGAGATACCTGAAGGAGGAACGCCTCACACTGTTAGCTTGCTATTGCATGACAAACTGGTGGATACTGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATATACAGGGCTATGAGTGTCAGGGTAGGACCAACTCAGAGAACTGTTAAGTCATTGTTCAAAACGTATATTGATTGTCTTCACATAAAAAAGACATCAAAGTCCCGGATGCTGGTTGAGGATGCTATGGAGGTTGACAATGGCCAGGGCAGAAATCCAGAAGAAGTTTTATTTGATGAAGAAAAGGTGGCTAAACTGAAGGAGCTCTCAAAACAACCAGATATCTATGAAAGGCTGACAAAGTCACTGGCGCCAAACATCTGGGAGCTAGATGATGTAAAGAAAGGTCTTCTTTGCCAGCTTTTTGGGGGCAATGCTTTGAAGTTGGCATCTGGCGCTAGCTTTCGTGGTGATATAAATATTCTCCTTGTTGGTGATCCTGGTACAAGCAAGTCGCAGCTACTTCAGTACATACACAAACTTTCTCCACGTGGCATTTACACCAGTGGAAGGGGGAGCTCAGCGGTTGGATTGACTGCTTACGTGGCCAAAGATCCTGAAACAGGAGAAACAGTTCTTGAGAGTGGTGCCCTAGTTTTGAGCGACCGAGGTATCTGCTGCATTGATGAATTTGACAAAATGTCTGACAATGCAAGGAGCATGTTACACGAGGTGATGGAACAACAAACTGTTTCAATAGCAAAGGCAGGCATTATTGCTTCCCTCAATGCAAGGACTTCGGTGTTGGCTTGCGCAAACCCTAGCGGTTCACGATATAATCCCCGCTTGTCTGTCATTGACAACATACACCTTCCTCCCACTCTTTTGTCCAGGTTTGATTTAATTTACTTAATGCTTGATAAGGCTGATGAACAGACCGACCGACGACTTGCCAAACATATTGTTTCCCTGCACTATAAGGATTATGAGAACATGGAGCAGGATGTGTTGGACATTTCTACACTAACTGATTATGTTAGCTATGCCCGAAAGCACATACACCCACAACTATCAGATGAAGCTGCTGATGAATTGATTACAGGCTATGTAAAAATAAGGGGTAGGGGAAAATTCTCCGGAAGTAGCAAAAAGGTAATAACGGCAACTCCAAGGCAGATTGAGAGTCTATTACGACTTAGTGAAGCATTGGCTCGGATTCGCTTCTCAGAATCGGTCGAAAAACATGATGTGGTGGAGGCATTTCGGCTTCTGGAAGTTGCAATGCAGCAATCTGCAATGGATACCAGAACTGGAACTATTGACATGGATCTCATAACTACTGGTGTTTCGGCAAGCGAAAGGATGAGGCGAGAAAGTTTGGTTCAAGACACTCGCAACATGATCATGGAGAAGATGCAAATTGGGGGACGTTCCATGCGGTTATTGGAGATATTGGAAGAACTAAAGAATCAGAGCCCTGGCAGCGAAATTCATCTTAATGATCTAAGGAGTGCAGTTGCTACTCTCGCCAGCGAAGGATTTGTTTCCATGGCTGGTGACAGTGTAAAAAGAACATGA
Protein sequence

>Msa0606100

MASDSTPMDSNNGPSSPDNSNSSPIANTYSSPGRRRRRQSITPSGTPQPNRSRFASSDATPTPSRHRRGGGIPSGRRVPATPTSTSEDFPMSSEGGDGYDMDDAGPTYVWGTNISVEDVNDAIQRFLKHFREKSASQGGDDDLDMDLDIEGKYEKLIKQVIELEGESIDVDARDVFDHDHELYSKMVRYPLEVLAIFDMVLMNLVTRMNPMFEKHVQTRIFNLKSSTSMRNLNPSDIERMVSMKGMIIRCSSIIPEIREAIFRCLVCGFCSDPVPVERGRIAEPTVCLREECQSKNSMTLVHNRCKFTDKQIVRLQETPDEIPEGGTPHTVSLLLHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTSKSRMLVEDAMEVDNGQGRNPEEVLFDEEKVAKLKELSKQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLMLDKADEQTDRRLAKHIVSLHYKDYENMEQDVLDISTLTDYVSYARKHIHPQLSDEAADELITGYVKIRGRGKFSGSSKKVITATPRQIESLLRLSEALARIRFSESVEKHDVVEAFRLLEVAMQQSAMDTRTGTIDMDLITTGVSASERMRRESLVQDTRNMIMEKMQIGGRSMRLLEILEELKNQSPGSEIHLNDLRSAVATLASEGFVSMAGDSVKRT*