Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238400 | XP_013462796.1 | 99.590 | 244 | 1 | 0 | 1 | 244 | 1 | 244 | 7.39e-179 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238400 | sp|Q9ZS88|DER22_ARATH | 88.525 | 244 | 28 | 0 | 1 | 244 | 1 | 244 | 2.08e-164 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238400 | I3STV7 | 99.590 | 244 | 1 | 0 | 1 | 244 | 1 | 244 | 3.53e-179 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101810 | Msa0238400 | 0.801430 | 9.036973e-49 | -8.615850e-47 |
| Msa0196500 | Msa0238400 | 0.939639 | 9.057454e-100 | -8.615850e-47 |
| Msa0215320 | Msa0238400 | 0.806112 | 9.636858e-50 | -8.615850e-47 |
| Msa0238400 | Msa0316160 | 0.931509 | 3.397715e-94 | -8.615850e-47 |
| Msa0238400 | Msa0719490 | 0.807905 | 4.022277e-50 | -8.615850e-47 |
| Msa0238400 | Msa0802470 | 0.833234 | 5.995233e-56 | -8.615850e-47 |
| Msa0238400 | Msa1019640 | -0.804032 | 2.624367e-49 | -8.615850e-47 |
| Msa0238400 | Msa1104370 | -0.807816 | 4.202497e-50 | -8.615850e-47 |
| Msa0238400 | Msa1170040 | 0.824772 | 6.735214e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238400 | MtrunA17_Chr2g0288201 | 99.590 | 244 | 1 | 0 | 1 | 244 | 1 | 244 | 0.0 | 501 |
| Msa0238400 | MtrunA17_Chr8g0389711 | 37.118 | 229 | 130 | 3 | 7 | 230 | 6 | 225 | 4.63e-42 | 143 |
| Msa0238400 | MtrunA17_Chr3g0079071 | 35.681 | 213 | 128 | 2 | 7 | 219 | 6 | 209 | 1.13e-36 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0238400 | AT4G04860.1 | 88.525 | 244 | 28 | 0 | 1 | 244 | 1 | 244 | 2.11e-165 | 457 |
| Msa0238400 | AT4G21810.1 | 88.525 | 244 | 28 | 0 | 1 | 244 | 1 | 244 | 2.11e-162 | 449 |
| Msa0238400 | AT4G29330.2 | 40.566 | 212 | 117 | 2 | 7 | 218 | 6 | 208 | 4.91e-49 | 160 |
| Msa0238400 | AT4G29330.1 | 39.906 | 213 | 119 | 2 | 7 | 219 | 6 | 209 | 2.05e-48 | 160 |
Find 89 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATTAGAAAGAGAGATTA+AGG | 0.214568 | 2_2:-11830258 | Msa0238400:five_prime_UTR |
| CAATCTTGGTGGAGTTCTTC+AGG | 0.237760 | 2_2:+11827813 | None:intergenic |
| TGAACGAACGAGAAATTTAA+AGG | 0.245650 | 2_2:+11830305 | None:intergenic |
| TAACAATTGCACCCGGAAAA+AGG | 0.258276 | 2_2:+11827719 | None:intergenic |
| TATTGCTTCACAACCAATCT+AGG | 0.280355 | 2_2:+11829771 | None:intergenic |
| GCAGGCCGGGCAACAACAAC+TGG | 0.297242 | 2_2:+11827861 | None:intergenic |
| TCCTTGTTGGTGCCAGTGCT+TGG | 0.326989 | 2_2:-11828104 | Msa0238400:CDS |
| TTACTAATTTCTTGTACTTC+AGG | 0.333044 | 2_2:-11829731 | Msa0238400:CDS |
| GGTGGAGTTCTTCAGGTTGC+GGG | 0.338628 | 2_2:+11827820 | None:intergenic |
| TAGGAAGCTCATGTGAATAA+AGG | 0.338635 | 2_2:+11828318 | None:intergenic |
| TTATGAATGTAGGTTCTCTT+GGG | 0.342033 | 2_2:-11828135 | Msa0238400:intron |
| TGACTGGAATCGTTCTCCTT+GGG | 0.352195 | 2_2:-11828522 | Msa0238400:CDS |
| TGTGATTAATCAGAGAAAAT+TGG | 0.356046 | 2_2:+11830335 | None:intergenic |
| TTTATGAATGTAGGTTCTCT+TGG | 0.362898 | 2_2:-11828136 | Msa0238400:intron |
| TTCTAGAGGAGAACTCGTTC+AGG | 0.364345 | 2_2:-11828594 | Msa0238400:CDS |
| TCACTGCTGCCTACCTTCCA+TGG | 0.372156 | 2_2:-11828282 | Msa0238400:CDS |
| TTGGGGTTCTCTGTCCTTGT+TGG | 0.373603 | 2_2:-11828117 | Msa0238400:CDS |
| TTTCTTGTACTTCAGGAAGA+TGG | 0.384049 | 2_2:-11829724 | Msa0238400:CDS |
| TCTCATTTCTGTTAAAACTT+TGG | 0.389968 | 2_2:+11827665 | None:intergenic |
| TGACAAAGACCATTCAATCT+TGG | 0.400281 | 2_2:+11827799 | None:intergenic |
| TCTGTACTTGAACCCTAGAT+TGG | 0.401436 | 2_2:-11829784 | Msa0238400:CDS |
| TTGTGAAGCAATATCAGTTT+TGG | 0.401770 | 2_2:-11829761 | Msa0238400:CDS |
| AAATTGGAGAAAGTGAGATT+TGG | 0.402803 | 2_2:+11830351 | None:intergenic |
| TTTATTCACATGAGCTTCCT+AGG | 0.416327 | 2_2:-11828316 | Msa0238400:CDS |
| TTGACTGGAATCGTTCTCCT+TGG | 0.416727 | 2_2:-11828523 | Msa0238400:CDS |
| GATGACTATAAGACTACAAA+TGG | 0.417360 | 2_2:+11827596 | None:intergenic |
| TGGTGGAGTTCTTCAGGTTG+CGG | 0.424337 | 2_2:+11827819 | None:intergenic |
| AGGAAGCTCATGTGAATAAA+GGG | 0.430778 | 2_2:+11828319 | None:intergenic |
| CCTTGTTGGTGCCAGTGCTT+GGG | 0.434475 | 2_2:-11828103 | Msa0238400:CDS |
| CACTGCTGCCTACCTTCCAT+GGG | 0.440571 | 2_2:-11828281 | Msa0238400:intron |
| CAGTGCTTGGGTAGATCTAC+TGG | 0.443686 | 2_2:-11828091 | Msa0238400:intron |
| GAACGAACGAGAAATTTAAA+GGG | 0.447406 | 2_2:+11830306 | None:intergenic |
| ATGACCCAGTTGTTGTTGCC+CGG | 0.447553 | 2_2:-11827866 | Msa0238400:CDS |
| CAAATCTAACATTGGCAGGC+CGG | 0.461355 | 2_2:+11827847 | None:intergenic |
| TTTGGGGCCACTGTATTGAC+TGG | 0.469493 | 2_2:-11828538 | Msa0238400:CDS |
| TTCTTGTACTTCAGGAAGAT+GGG | 0.470662 | 2_2:-11829723 | Msa0238400:intron |
| CAACTCATTGACATTTATGA+TGG | 0.474921 | 2_2:-11828449 | Msa0238400:intron |
| GCAGCAAATCTAACATTGGC+AGG | 0.478288 | 2_2:+11827843 | None:intergenic |
| GATGTCTATCCTCGGATGAC+TGG | 0.483782 | 2_2:-11827936 | Msa0238400:CDS |
| AAATCTAACATTGGCAGGCC+GGG | 0.488090 | 2_2:+11827848 | None:intergenic |
| GCAAACGACTCTGACAAGTA+AGG | 0.501809 | 2_2:+11828490 | None:intergenic |
| AGAGAAACTACTAGATGCCC+AGG | 0.504340 | 2_2:+11827535 | None:intergenic |
| CAAAGACCATTCAATCTTGG+TGG | 0.513494 | 2_2:+11827802 | None:intergenic |
| AGAACTCCACCAAGATTGAA+TGG | 0.519731 | 2_2:-11827808 | Msa0238400:exon |
| TGGCACAAGCGGTTGAAGAA+TGG | 0.522603 | 2_2:-11830221 | Msa0238400:CDS |
| TTCTTGAAGATGTCTATCCT+CGG | 0.524401 | 2_2:-11827944 | Msa0238400:CDS |
| TGGAGAAAGTGAGATTTGGA+TGG | 0.525598 | 2_2:+11830355 | None:intergenic |
| GACTGGAATCGTTCTCCTTG+GGG | 0.528315 | 2_2:-11828521 | Msa0238400:CDS |
| TCTAGAGGAGAACTCGTTCA+GGG | 0.529586 | 2_2:-11828593 | Msa0238400:CDS |
| TATGAATGTAGGTTCTCTTG+GGG | 0.532545 | 2_2:-11828134 | Msa0238400:intron |
| GAGAAGGAGGAAGAAGAAAG+AGG | 0.532592 | 2_2:+11830415 | None:intergenic |
| TAGCTATATATTACAAACTT+CGG | 0.532920 | 2_2:+11827756 | None:intergenic |
| CAGTGAAAGTAAAGAGACCT+AGG | 0.533734 | 2_2:+11828299 | None:intergenic |
| TATCTACAAGAACAGAAAAG+AGG | 0.538841 | 2_2:+11827632 | None:intergenic |
| GGGTTCAAGTACAGATGATA+CGG | 0.543090 | 2_2:+11829792 | None:intergenic |
| CTTCAAGAAAATAGTAAGCA+TGG | 0.545004 | 2_2:+11827958 | None:intergenic |
| AGATATGATCGTGTGATCAC+AGG | 0.550700 | 2_2:+11830186 | None:intergenic |
| GCTGCTGTTGTCACCACCAT+CGG | 0.555013 | 2_2:-11830159 | Msa0238400:CDS |
| CATTGGATGAAAGACTGCCC+TGG | 0.561176 | 2_2:-11827553 | Msa0238400:three_prime_UTR |
| ATTGCTTCACAACCAATCTA+GGG | 0.565167 | 2_2:+11829772 | None:intergenic |
| CTATAAGACTACAAATGGAA+TGG | 0.570478 | 2_2:+11827601 | None:intergenic |
| AAAACTTTGGTCATTCGACA+TGG | 0.592840 | 2_2:+11827678 | None:intergenic |
| TTGGATGGAAATTGATGTGA+CGG | 0.595540 | 2_2:+11830370 | None:intergenic |
| CAGTAGATCTACCCAAGCAC+TGG | 0.595736 | 2_2:+11828092 | None:intergenic |
| AGAAGAAGAGAACGAGAAGG+AGG | 0.599397 | 2_2:+11830402 | None:intergenic |
| CGGGGCAGCAAATCTAACAT+TGG | 0.599597 | 2_2:+11827839 | None:intergenic |
| ATTAACAACAATGGCACAAG+CGG | 0.606576 | 2_2:-11830232 | Msa0238400:exon |
| TACCTCAAGGGAACATCCGA+TGG | 0.606851 | 2_2:+11830143 | None:intergenic |
| CAGGCCGGGCAACAACAACT+GGG | 0.607750 | 2_2:+11827862 | None:intergenic |
| CCCAAGCACTGGCACCAACA+AGG | 0.610622 | 2_2:+11828103 | None:intergenic |
| ACTGGAATCGTTCTCCTTGG+GGG | 0.615364 | 2_2:-11828520 | Msa0238400:CDS |
| AGAAATTGGTTATACCTCAA+GGG | 0.617369 | 2_2:+11830131 | None:intergenic |
| CTTACGCACCCATGGAAGGT+AGG | 0.622292 | 2_2:+11828273 | None:intergenic |
| ATTGGATGAAAGACTGCCCT+GGG | 0.623145 | 2_2:-11827552 | Msa0238400:three_prime_UTR |
| CGTAGAAGAAGAGAACGAGA+AGG | 0.624650 | 2_2:+11830399 | None:intergenic |
| GTAGCTTACGCACCCATGGA+AGG | 0.624745 | 2_2:+11828269 | None:intergenic |
| TAAATGTCAATGAGTTGCTG+AGG | 0.624935 | 2_2:+11828455 | None:intergenic |
| TTAAGGAAAATTAACAACAA+TGG | 0.632633 | 2_2:-11830241 | Msa0238400:exon |
| TCGGTACTGCAAGCTTCTAG+AGG | 0.636595 | 2_2:-11828608 | Msa0238400:CDS |
| TCAGAAAATACTCAGCGAAG+TGG | 0.637547 | 2_2:-11827779 | Msa0238400:three_prime_UTR |
| GTGGAGTTCTTCAGGTTGCG+GGG | 0.652676 | 2_2:+11827821 | None:intergenic |
| CTCAAGGGAACATCCGATGG+TGG | 0.657809 | 2_2:+11830146 | None:intergenic |
| GGGCGACGACCAGTCATCCG+AGG | 0.661193 | 2_2:+11827927 | None:intergenic |
| CTAGAGGAGAACTCGTTCAG+GGG | 0.664370 | 2_2:-11828592 | Msa0238400:CDS |
| CACCATCGGATGTTCCCTTG+AGG | 0.668525 | 2_2:-11830145 | Msa0238400:intron |
| ATGTAATTAACAATTGCACC+CGG | 0.669033 | 2_2:+11827712 | None:intergenic |
| AATAGTGCTTTGATGAGCGA+TGG | 0.681563 | 2_2:+11827894 | None:intergenic |
| AACGATTCCAGTCAATACAG+TGG | 0.704187 | 2_2:+11828531 | None:intergenic |
| GAGAAACTACTAGATGCCCA+GGG | 0.706595 | 2_2:+11827536 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTGGTTTAATATT+TGG | - | chr2_2:11827963-11827982 | Msa0238400:CDS | 10.0% |
| !!! | GTTAATTGCATTTTTTTTTT+TGG | - | chr2_2:11827951-11827970 | Msa0238400:CDS | 15.0% |
| !!! | ATCTTTTTACCTTTTTTTAT+AGG | - | chr2_2:11828222-11828241 | Msa0238400:intron | 15.0% |
| !!! | GAATGTTTTTTTTTTTTCAA+TGG | - | chr2_2:11828580-11828599 | Msa0238400:CDS | 15.0% |
| !!! | ATTTTAAGTTTTATGAATGT+AGG | - | chr2_2:11829766-11829785 | Msa0238400:CDS | 15.0% |
| !! | TTAATTAGAAAGAGAGATTA+AGG | - | chr2_2:11827653-11827672 | Msa0238400:three_prime_UTR | 20.0% |
| !! | TTAAGGAAAATTAACAACAA+TGG | - | chr2_2:11827670-11827689 | Msa0238400:three_prime_UTR | 20.0% |
| !!! | CAATTTCTTCTCAATTTTTA+GGG | - | chr2_2:11827795-11827814 | Msa0238400:exon | 20.0% |
| !!! | TTTTTTTTCTCTCGTAATTA+TGG | - | chr2_2:11827825-11827844 | Msa0238400:CDS | 20.0% |
| !! | TAATTATGGTGTGTTTAATT+TGG | - | chr2_2:11827839-11827858 | Msa0238400:CDS | 20.0% |
| !! | GTTTCAAATTAATGTACTAA+CGG | + | chr2_2:11827904-11827923 | None:intergenic | 20.0% |
| !! | AAATGTTGTTAGAAAATTAG+CGG | - | chr2_2:11828246-11828265 | Msa0238400:intron | 20.0% |
| !! | ATAAATAGCAAATCTTTCAA+AGG | + | chr2_2:11828369-11828388 | None:intergenic | 20.0% |
| !! | TAAGGATTAAATATATATGC+AGG | + | chr2_2:11829186-11829205 | None:intergenic | 20.0% |
| !! | TTCACAATTATCAACTTATA+AGG | + | chr2_2:11829204-11829223 | None:intergenic | 20.0% |
| !! | TATTGAATAAGAAAATACCA+TGG | + | chr2_2:11829244-11829263 | None:intergenic | 20.0% |
| !!! | TAAGAGCATGTAAAAAAAAT+CGG | + | chr2_2:11829353-11829372 | None:intergenic | 20.0% |
| !!! | TTTTTTTACATGCTCTTATT+TGG | - | chr2_2:11829355-11829374 | Msa0238400:intron | 20.0% |
| !!! | TTTTTTACATGCTCTTATTT+GGG | - | chr2_2:11829356-11829375 | Msa0238400:intron | 20.0% |
| !! | AACCTGAAAAAGATAAATTA+AGG | + | chr2_2:11829551-11829570 | None:intergenic | 20.0% |
| !! | TGATATGATAACATTAAACT+GGG | - | chr2_2:11829677-11829696 | Msa0238400:intron | 20.0% |
| !! | GAAATTAAATAGTCATATCA+TGG | + | chr2_2:11829873-11829892 | None:intergenic | 20.0% |
| !! | TAGCTATATATTACAAACTT+CGG | + | chr2_2:11830158-11830177 | None:intergenic | 20.0% |
| !!! | TTTTTATGTTCTTATTGCAT+TGG | - | chr2_2:11830341-11830360 | Msa0238400:five_prime_UTR | 20.0% |
| !!! | TATTTTTCTACTGTTTGAAA+AGG | - | chr2_2:11830436-11830455 | Msa0238400:five_prime_UTR | 20.0% |
| ! | TGTGATTAATCAGAGAAAAT+TGG | + | chr2_2:11827579-11827598 | None:intergenic | 25.0% |
| ! | CCTAAAAATTGAGAAGAAAT+TGG | + | chr2_2:11827797-11827816 | None:intergenic | 25.0% |
| !! | CCAATTTCTTCTCAATTTTT+AGG | - | chr2_2:11827794-11827813 | Msa0238400:exon | 25.0% |
| ! | AATGCACACAATTAATGATT+TGG | + | chr2_2:11827926-11827945 | None:intergenic | 25.0% |
| !! | TTTGGTTTAATATTTGGAAG+AGG | - | chr2_2:11827969-11827988 | Msa0238400:CDS | 25.0% |
| !! | TGATTTTGCAGTTAATTGAT+TGG | - | chr2_2:11828064-11828083 | Msa0238400:intron | 25.0% |
| ! | TTACTAATTTCTTGTACTTC+AGG | - | chr2_2:11828180-11828199 | Msa0238400:intron | 25.0% |
| ! | CAACATTTGCCTATAAAAAA+AGG | + | chr2_2:11828234-11828253 | None:intergenic | 25.0% |
| ! | TAATGTTGTTAACATTCTTG+TGG | - | chr2_2:11828454-11828473 | Msa0238400:CDS | 25.0% |
| !! | CTCGTAATCTAGTATATTTT+GGG | + | chr2_2:11828825-11828844 | None:intergenic | 25.0% |
| !! | TCTCGTAATCTAGTATATTT+TGG | + | chr2_2:11828826-11828845 | None:intergenic | 25.0% |
| ! | GTTGAAATTTGAGAAATTGA+TGG | - | chr2_2:11829024-11829043 | Msa0238400:intron | 25.0% |
| ! | AATAATCTCTTGATACAAAG+TGG | - | chr2_2:11829073-11829092 | Msa0238400:intron | 25.0% |
| ! | ATAATCTCTTGATACAAAGT+GGG | - | chr2_2:11829074-11829093 | Msa0238400:intron | 25.0% |
| !!! | AGGCATTGATTATACAATAT+AGG | + | chr2_2:11829166-11829185 | None:intergenic | 25.0% |
| ! | TTATTTATTTAACTGTGCCA+TGG | - | chr2_2:11829224-11829243 | Msa0238400:intron | 25.0% |
| !!! | TTCATATGTTTTTTCTTGCT+CGG | - | chr2_2:11829284-11829303 | Msa0238400:intron | 25.0% |
| !!! | TTTTTACATGCTCTTATTTG+GGG | - | chr2_2:11829357-11829376 | Msa0238400:intron | 25.0% |
| !! | AGCCTTAATTTATCTTTTTC+AGG | - | chr2_2:11829546-11829565 | Msa0238400:intron | 25.0% |
| !!! | ATCTTTTTCAGGTTTATGTA+TGG | - | chr2_2:11829557-11829576 | Msa0238400:intron | 25.0% |
| ! | CAGTTTAATGTTATCATATC+AGG | + | chr2_2:11829678-11829697 | None:intergenic | 25.0% |
| ! | CTGATATGATAACATTAAAC+TGG | - | chr2_2:11829676-11829695 | Msa0238400:intron | 25.0% |
| ! | TCAATTCTAACTTACAATCA+AGG | - | chr2_2:11829736-11829755 | Msa0238400:CDS | 25.0% |
| ! | TGGTATATGTATTCTTTGAA+TGG | + | chr2_2:11829853-11829872 | None:intergenic | 25.0% |
| !! | TCTATTTTCAAACCTTTTTC+CGG | - | chr2_2:11830180-11830199 | Msa0238400:CDS | 25.0% |
| ! | TCTCATTTCTGTTAAAACTT+TGG | + | chr2_2:11830249-11830268 | None:intergenic | 25.0% |
| AAATTGGAGAAAGTGAGATT+TGG | + | chr2_2:11827563-11827582 | None:intergenic | 30.0% | |
| GAACGAACGAGAAATTTAAA+GGG | + | chr2_2:11827608-11827627 | None:intergenic | 30.0% | |
| TGAACGAACGAGAAATTTAA+AGG | + | chr2_2:11827609-11827628 | None:intergenic | 30.0% | |
| AGAAATTGGTTATACCTCAA+GGG | + | chr2_2:11827783-11827802 | None:intergenic | 30.0% | |
| AAGAAATTGGTTATACCTCA+AGG | + | chr2_2:11827784-11827803 | None:intergenic | 30.0% | |
| ! | GTTGCAGTTTGATATTCTTT+TGG | - | chr2_2:11828013-11828032 | Msa0238400:intron | 30.0% |
| ! | TTGTGAAGCAATATCAGTTT+TGG | - | chr2_2:11828150-11828169 | Msa0238400:intron | 30.0% |
| AGTTCAAACTCCGAAAATTA+AGG | + | chr2_2:11828275-11828294 | None:intergenic | 30.0% | |
| ! | AATTTTCGGAGTTTGAACTT+TGG | - | chr2_2:11828276-11828295 | Msa0238400:intron | 30.0% |
| !! | GATTTGCTATTTATTGCGAT+TGG | - | chr2_2:11828375-11828394 | Msa0238400:intron | 30.0% |
| CAACATTAATTAGTGACGTA+GGG | + | chr2_2:11828442-11828461 | None:intergenic | 30.0% | |
| ACAACATTAATTAGTGACGT+AGG | + | chr2_2:11828443-11828462 | None:intergenic | 30.0% | |
| !! | TCTGTTTTTCATTTCGTTGT+TGG | - | chr2_2:11828478-11828497 | Msa0238400:CDS | 30.0% |
| !!! | TTTTTTTTTTCAATGGCGTG+TGG | - | chr2_2:11828587-11828606 | Msa0238400:CDS | 30.0% |
| !!! | TTTTTTTTTCAATGGCGTGT+GGG | - | chr2_2:11828588-11828607 | Msa0238400:CDS | 30.0% |
| !! | GAGTATTGGTCATTTGTAAT+TGG | - | chr2_2:11828627-11828646 | Msa0238400:CDS | 30.0% |
| AAATGTGATTTCCAAATGCA+AGG | + | chr2_2:11828680-11828699 | None:intergenic | 30.0% | |
| !! | CATTTTAGTAACAATGACAC+CGG | - | chr2_2:11828695-11828714 | Msa0238400:intron | 30.0% |
| AGTCAAGTGCAAATATAAAG+CGG | + | chr2_2:11828892-11828911 | None:intergenic | 30.0% | |
| ! | CCTAATTTGTAATGCAAGAA+GGG | + | chr2_2:11828928-11828947 | None:intergenic | 30.0% |
| ! | ACCTAATTTGTAATGCAAGA+AGG | + | chr2_2:11828929-11828948 | None:intergenic | 30.0% |
| ! | CAAATTAGGTAAAGCTGTTT+TGG | - | chr2_2:11828939-11828958 | Msa0238400:intron | 30.0% |
| TCTTATTCAATATGCAGACT+TGG | - | chr2_2:11829252-11829271 | Msa0238400:intron | 30.0% | |
| CAACTCATTGACATTTATGA+TGG | - | chr2_2:11829462-11829481 | Msa0238400:intron | 30.0% | |
| AATTAAGGCTTTACATGAGA+GGG | + | chr2_2:11829536-11829555 | None:intergenic | 30.0% | |
| AAATTAAGGCTTTACATGAG+AGG | + | chr2_2:11829537-11829556 | None:intergenic | 30.0% | |
| TTTATGAATGTAGGTTCTCT+TGG | - | chr2_2:11829775-11829794 | Msa0238400:CDS | 30.0% | |
| TTATGAATGTAGGTTCTCTT+GGG | - | chr2_2:11829776-11829795 | Msa0238400:CDS | 30.0% | |
| ! | AATCTTGACAACATTTTCCA+GGG | - | chr2_2:11829918-11829937 | Msa0238400:intron | 30.0% |
| CTTCAAGAAAATAGTAAGCA+TGG | + | chr2_2:11829956-11829975 | None:intergenic | 30.0% | |
| ! | CTATTTTCAAACCTTTTTCC+GGG | - | chr2_2:11830181-11830200 | Msa0238400:CDS | 30.0% |
| ATGTAATTAACAATTGCACC+CGG | + | chr2_2:11830202-11830221 | None:intergenic | 30.0% | |
| TATCTACAAGAACAGAAAAG+AGG | + | chr2_2:11830282-11830301 | None:intergenic | 30.0% | |
| CTATAAGACTACAAATGGAA+TGG | + | chr2_2:11830313-11830332 | None:intergenic | 30.0% | |
| GATGACTATAAGACTACAAA+TGG | + | chr2_2:11830318-11830337 | None:intergenic | 30.0% | |
| TTGGATGGAAATTGATGTGA+CGG | + | chr2_2:11827544-11827563 | None:intergenic | 35.0% | |
| ATTAACAACAATGGCACAAG+CGG | - | chr2_2:11827679-11827698 | Msa0238400:three_prime_UTR | 35.0% | |
| ATTGCTTCACAACCAATCTA+GGG | + | chr2_2:11828142-11828161 | None:intergenic | 35.0% | |
| TATTGCTTCACAACCAATCT+AGG | + | chr2_2:11828143-11828162 | None:intergenic | 35.0% | |
| TTTCTTGTACTTCAGGAAGA+TGG | - | chr2_2:11828187-11828206 | Msa0238400:intron | 35.0% | |
| TTCTTGTACTTCAGGAAGAT+GGG | - | chr2_2:11828188-11828207 | Msa0238400:intron | 35.0% | |
| ! | TTAGCGGCTTCCTTAATTTT+CGG | - | chr2_2:11828262-11828281 | Msa0238400:intron | 35.0% |
| ! | CGCTAAAGAAGTTCTAACTA+AGG | + | chr2_2:11828303-11828322 | None:intergenic | 35.0% |
| AGCAAATCTTTCAAAGGTGA+AGG | + | chr2_2:11828363-11828382 | None:intergenic | 35.0% | |
| ! | GCTATTTATTGCGATTGGTT+TGG | - | chr2_2:11828380-11828399 | Msa0238400:intron | 35.0% |
| !! | ATTTATTGCGATTGGTTTGG+CGG | - | chr2_2:11828383-11828402 | Msa0238400:intron | 35.0% |
| !!! | GATTGTTTTTTTGCACGTGT+GGG | - | chr2_2:11828504-11828523 | Msa0238400:CDS | 35.0% |
| ! | TGGTCACTTATAAAGTACCA+TGG | - | chr2_2:11828647-11828666 | Msa0238400:intron | 35.0% |
| ! | GGTCACTTATAAAGTACCAT+GGG | - | chr2_2:11828648-11828667 | Msa0238400:intron | 35.0% |
| AAATGCAAGGATTAAACCCA+TGG | + | chr2_2:11828667-11828686 | None:intergenic | 35.0% | |
| ATGGGTTTAATCCTTGCATT+TGG | - | chr2_2:11828666-11828685 | Msa0238400:intron | 35.0% | |
| AATGAAAGCGATGTTGGATT+TGG | - | chr2_2:11828721-11828740 | Msa0238400:intron | 35.0% | |
| CCCTTCTTGCATTACAAATT+AGG | - | chr2_2:11828925-11828944 | Msa0238400:intron | 35.0% | |
| TTTCAACCCTCTTACTGTAT+AGG | + | chr2_2:11829011-11829030 | None:intergenic | 35.0% | |
| AAACGAAAACAGAGATGTGT+GGG | + | chr2_2:11829142-11829161 | None:intergenic | 35.0% | |
| AAAACGAAAACAGAGATGTG+TGG | + | chr2_2:11829143-11829162 | None:intergenic | 35.0% | |
| TAAATGTCAATGAGTTGCTG+AGG | + | chr2_2:11829459-11829478 | None:intergenic | 35.0% | |
| CATGAGAGGGTTTAAATATG+AGG | + | chr2_2:11829523-11829542 | None:intergenic | 35.0% | |
| AGGAAGCTCATGTGAATAAA+GGG | + | chr2_2:11829595-11829614 | None:intergenic | 35.0% | |
| TAGGAAGCTCATGTGAATAA+AGG | + | chr2_2:11829596-11829615 | None:intergenic | 35.0% | |
| TTTATTCACATGAGCTTCCT+AGG | - | chr2_2:11829595-11829614 | Msa0238400:intron | 35.0% | |
| TATGAATGTAGGTTCTCTTG+GGG | - | chr2_2:11829777-11829796 | Msa0238400:CDS | 35.0% | |
| ! | GAATCTTGACAACATTTTCC+AGG | - | chr2_2:11829917-11829936 | Msa0238400:intron | 35.0% |
| TTCTTGAAGATGTCTATCCT+CGG | - | chr2_2:11829967-11829986 | Msa0238400:intron | 35.0% | |
| TGACAAAGACCATTCAATCT+TGG | + | chr2_2:11830115-11830134 | None:intergenic | 35.0% | |
| AAAACTTTGGTCATTCGACA+TGG | + | chr2_2:11830236-11830255 | None:intergenic | 35.0% | |
| TGGAGAAAGTGAGATTTGGA+TGG | + | chr2_2:11827559-11827578 | None:intergenic | 40.0% | |
| AGATATGATCGTGTGATCAC+AGG | + | chr2_2:11827728-11827747 | None:intergenic | 40.0% | |
| GGGTTCAAGTACAGATGATA+CGG | + | chr2_2:11828122-11828141 | None:intergenic | 40.0% | |
| TCTGTACTTGAACCCTAGAT+TGG | - | chr2_2:11828127-11828146 | Msa0238400:intron | 40.0% | |
| !! | GCAATATCAGTTTTGGCGTT+TGG | - | chr2_2:11828157-11828176 | Msa0238400:intron | 40.0% |
| GTGACGTAGGGACATTAAAA+CGG | + | chr2_2:11828430-11828449 | None:intergenic | 40.0% | |
| !!! | CGATTGTTTTTTTGCACGTG+TGG | - | chr2_2:11828503-11828522 | Msa0238400:CDS | 40.0% |
| AAACACACGTGCAATAGAGA+GGG | + | chr2_2:11828560-11828579 | None:intergenic | 40.0% | |
| GAATGTGATTGAGCGAGTAT+TGG | - | chr2_2:11828613-11828632 | Msa0238400:CDS | 40.0% | |
| CAACATCGCTTTCATTTCAC+CGG | + | chr2_2:11828717-11828736 | None:intergenic | 40.0% | |
| TGAGGAGTGGTTATTGCTAT+AGG | - | chr2_2:11828755-11828774 | Msa0238400:intron | 40.0% | |
| TGTAATGCAAGAAGGGAACT+AGG | + | chr2_2:11828921-11828940 | None:intergenic | 40.0% | |
| !!! | AGGTAAAGCTGTTTTGGTCA+TGG | - | chr2_2:11828945-11828964 | Msa0238400:intron | 40.0% |
| AATGCGTCCTATACAGTAAG+AGG | - | chr2_2:11829001-11829020 | Msa0238400:intron | 40.0% | |
| ATGCGTCCTATACAGTAAGA+GGG | - | chr2_2:11829002-11829021 | Msa0238400:intron | 40.0% | |
| AACGAAAACAGAGATGTGTG+GGG | + | chr2_2:11829141-11829160 | None:intergenic | 40.0% | |
| AACGATTCCAGTCAATACAG+TGG | + | chr2_2:11829383-11829402 | None:intergenic | 40.0% | |
| CAGTGAAAGTAAAGAGACCT+AGG | + | chr2_2:11829615-11829634 | None:intergenic | 40.0% | |
| ! | ATTTTCCAGGGAATGATTGC+TGG | - | chr2_2:11829930-11829949 | Msa0238400:intron | 40.0% |
| !! | ATGAGCGATGGTGTTTTAAG+GGG | + | chr2_2:11830008-11830027 | None:intergenic | 40.0% |
| !! | GATGAGCGATGGTGTTTTAA+GGG | + | chr2_2:11830009-11830028 | None:intergenic | 40.0% |
| ! | TGATGAGCGATGGTGTTTTA+AGG | + | chr2_2:11830010-11830029 | None:intergenic | 40.0% |
| AATAGTGCTTTGATGAGCGA+TGG | + | chr2_2:11830020-11830039 | None:intergenic | 40.0% | |
| AGAACTCCACCAAGATTGAA+TGG | - | chr2_2:11830103-11830122 | Msa0238400:intron | 40.0% | |
| CAAAGACCATTCAATCTTGG+TGG | + | chr2_2:11830112-11830131 | None:intergenic | 40.0% | |
| TCAGAAAATACTCAGCGAAG+TGG | - | chr2_2:11830132-11830151 | Msa0238400:intron | 40.0% | |
| TAACAATTGCACCCGGAAAA+AGG | + | chr2_2:11830195-11830214 | None:intergenic | 40.0% | |
| GAGAAGGAGGAAGAAGAAAG+AGG | + | chr2_2:11827499-11827518 | None:intergenic | 45.0% | |
| AGAAGAAGAGAACGAGAAGG+AGG | + | chr2_2:11827512-11827531 | None:intergenic | 45.0% | |
| CGTAGAAGAAGAGAACGAGA+AGG | + | chr2_2:11827515-11827534 | None:intergenic | 45.0% | |
| TTCCAACCGTGTTACCTACT+TGG | - | chr2_2:11828333-11828352 | Msa0238400:CDS | 45.0% | |
| TCCAACCGTGTTACCTACTT+GGG | - | chr2_2:11828334-11828353 | Msa0238400:CDS | 45.0% | |
| CAAACACACGTGCAATAGAG+AGG | + | chr2_2:11828561-11828580 | None:intergenic | 45.0% | |
| CGGTGAAATGAAAGCGATGT+TGG | - | chr2_2:11828715-11828734 | Msa0238400:intron | 45.0% | |
| ! | GATTTGGAGCAACAGAAGTG+AGG | - | chr2_2:11828737-11828756 | Msa0238400:intron | 45.0% |
| AAAACAGAGATGTGTGGGGT+GGG | + | chr2_2:11829137-11829156 | None:intergenic | 45.0% | |
| ! | TTCTAGAGGAGAACTCGTTC+AGG | - | chr2_2:11829317-11829336 | Msa0238400:intron | 45.0% |
| TCTAGAGGAGAACTCGTTCA+GGG | - | chr2_2:11829318-11829337 | Msa0238400:intron | 45.0% | |
| TTGACTGGAATCGTTCTCCT+TGG | - | chr2_2:11829388-11829407 | Msa0238400:intron | 45.0% | |
| TGACTGGAATCGTTCTCCTT+GGG | - | chr2_2:11829389-11829408 | Msa0238400:intron | 45.0% | |
| ! | AGTAAGGTATCATTCCCCCA+AGG | + | chr2_2:11829408-11829427 | None:intergenic | 45.0% |
| GCAAACGACTCTGACAAGTA+AGG | + | chr2_2:11829424-11829443 | None:intergenic | 45.0% | |
| !!! | TGAGCGATGGTGTTTTAAGG+GGG | + | chr2_2:11830007-11830026 | None:intergenic | 45.0% |
| AAATCTAACATTGGCAGGCC+GGG | + | chr2_2:11830066-11830085 | None:intergenic | 45.0% | |
| CAAATCTAACATTGGCAGGC+CGG | + | chr2_2:11830067-11830086 | None:intergenic | 45.0% | |
| GCAGCAAATCTAACATTGGC+AGG | + | chr2_2:11830071-11830090 | None:intergenic | 45.0% | |
| CAATCTTGGTGGAGTTCTTC+AGG | + | chr2_2:11830101-11830120 | None:intergenic | 45.0% | |
| ATTGGATGAAAGACTGCCCT+GGG | - | chr2_2:11830359-11830378 | Msa0238400:five_prime_UTR | 45.0% | |
| GAGAAACTACTAGATGCCCA+GGG | + | chr2_2:11830378-11830397 | None:intergenic | 45.0% | |
| AGAGAAACTACTAGATGCCC+AGG | + | chr2_2:11830379-11830398 | None:intergenic | 45.0% | |
| TGGCACAAGCGGTTGAAGAA+TGG | - | chr2_2:11827690-11827709 | Msa0238400:three_prime_UTR | 50.0% | |
| TACCTCAAGGGAACATCCGA+TGG | + | chr2_2:11827771-11827790 | None:intergenic | 50.0% | |
| TCCCAAGTAGGTAACACGGT+TGG | + | chr2_2:11828338-11828357 | None:intergenic | 50.0% | |
| GGAGTCCCAAGTAGGTAACA+CGG | + | chr2_2:11828342-11828361 | None:intergenic | 50.0% | |
| AAGGTGAAGGAGTCCCAAGT+AGG | + | chr2_2:11828350-11828369 | None:intergenic | 50.0% | |
| ACACGTGCAATAGAGAGGGA+GGG | + | chr2_2:11828556-11828575 | None:intergenic | 50.0% | |
| AGGTGAGTGAGATGTACACG+AGG | - | chr2_2:11828775-11828794 | Msa0238400:intron | 50.0% | |
| TGAGTGAGATGTACACGAGG+TGG | - | chr2_2:11828778-11828797 | Msa0238400:intron | 50.0% | |
| TACACGAGGTGGATGACTGT+GGG | - | chr2_2:11828789-11828808 | Msa0238400:intron | 50.0% | |
| AAACAGAGATGTGTGGGGTG+GGG | + | chr2_2:11829136-11829155 | None:intergenic | 50.0% | |
| GAAAACAGAGATGTGTGGGG+TGG | + | chr2_2:11829138-11829157 | None:intergenic | 50.0% | |
| TCGGTACTGCAAGCTTCTAG+AGG | - | chr2_2:11829303-11829322 | Msa0238400:intron | 50.0% | |
| CTAGAGGAGAACTCGTTCAG+GGG | - | chr2_2:11829319-11829338 | Msa0238400:intron | 50.0% | |
| ! | TTTGGGGCCACTGTATTGAC+TGG | - | chr2_2:11829373-11829392 | Msa0238400:intron | 50.0% |
| GACTGGAATCGTTCTCCTTG+GGG | - | chr2_2:11829390-11829409 | Msa0238400:intron | 50.0% | |
| ACTGGAATCGTTCTCCTTGG+GGG | - | chr2_2:11829391-11829410 | Msa0238400:intron | 50.0% | |
| TTGGGGTTCTCTGTCCTTGT+TGG | - | chr2_2:11829794-11829813 | Msa0238400:CDS | 50.0% | |
| CAGTAGATCTACCCAAGCAC+TGG | + | chr2_2:11829822-11829841 | None:intergenic | 50.0% | |
| CAGTGCTTGGGTAGATCTAC+TGG | - | chr2_2:11829820-11829839 | Msa0238400:intron | 50.0% | |
| GATGTCTATCCTCGGATGAC+TGG | - | chr2_2:11829975-11829994 | Msa0238400:intron | 50.0% | |
| ! | ATGACCCAGTTGTTGTTGCC+CGG | - | chr2_2:11830045-11830064 | Msa0238400:intron | 50.0% |
| CGGGGCAGCAAATCTAACAT+TGG | + | chr2_2:11830075-11830094 | None:intergenic | 50.0% | |
| !! | TGGTGGAGTTCTTCAGGTTG+CGG | + | chr2_2:11830095-11830114 | None:intergenic | 50.0% |
| CATTGGATGAAAGACTGCCC+TGG | - | chr2_2:11830358-11830377 | Msa0238400:five_prime_UTR | 50.0% | |
| GCTGCTGTTGTCACCACCAT+CGG | - | chr2_2:11827752-11827771 | Msa0238400:three_prime_UTR | 55.0% | |
| CTCAAGGGAACATCCGATGG+TGG | + | chr2_2:11827768-11827787 | None:intergenic | 55.0% | |
| CACCATCGGATGTTCCCTTG+AGG | - | chr2_2:11827766-11827785 | Msa0238400:three_prime_UTR | 55.0% | |
| GAGAGGGAGGGAGAAATGCT+AGG | + | chr2_2:11828544-11828563 | None:intergenic | 55.0% | |
| CACACGTGCAATAGAGAGGG+AGG | + | chr2_2:11828557-11828576 | None:intergenic | 55.0% | |
| GGAGCAACAGAAGTGAGGAG+TGG | - | chr2_2:11828742-11828761 | Msa0238400:intron | 55.0% | |
| GTACACGAGGTGGATGACTG+TGG | - | chr2_2:11828788-11828807 | Msa0238400:intron | 55.0% | |
| TCACTGCTGCCTACCTTCCA+TGG | - | chr2_2:11829629-11829648 | Msa0238400:intron | 55.0% | |
| CACTGCTGCCTACCTTCCAT+GGG | - | chr2_2:11829630-11829649 | Msa0238400:intron | 55.0% | |
| CTTACGCACCCATGGAAGGT+AGG | + | chr2_2:11829641-11829660 | None:intergenic | 55.0% | |
| GTAGCTTACGCACCCATGGA+AGG | + | chr2_2:11829645-11829664 | None:intergenic | 55.0% | |
| CTGTGTAGCTTACGCACCCA+TGG | + | chr2_2:11829649-11829668 | None:intergenic | 55.0% | |
| !! | TCCTTGTTGGTGCCAGTGCT+TGG | - | chr2_2:11829807-11829826 | Msa0238400:intron | 55.0% |
| !! | CCTTGTTGGTGCCAGTGCTT+GGG | - | chr2_2:11829808-11829827 | Msa0238400:intron | 55.0% |
| CATGGCCAGCAATCATTCCC+TGG | + | chr2_2:11829938-11829957 | None:intergenic | 55.0% | |
| !! | GTGGAGTTCTTCAGGTTGCG+GGG | + | chr2_2:11830093-11830112 | None:intergenic | 55.0% |
| !! | GGTGGAGTTCTTCAGGTTGC+GGG | + | chr2_2:11830094-11830113 | None:intergenic | 55.0% |
| AGAGATGTGTGGGGTGGGGT+GGG | + | chr2_2:11829132-11829151 | None:intergenic | 60.0% | |
| !! | CCCAAGCACTGGCACCAACA+AGG | + | chr2_2:11829811-11829830 | None:intergenic | 60.0% |
| CAGGCCGGGCAACAACAACT+GGG | + | chr2_2:11830052-11830071 | None:intergenic | 60.0% | |
| GAGATGTGTGGGGTGGGGTG+GGG | + | chr2_2:11829131-11829150 | None:intergenic | 65.0% | |
| CAGAGATGTGTGGGGTGGGG+TGG | + | chr2_2:11829133-11829152 | None:intergenic | 65.0% | |
| GCAGGCCGGGCAACAACAAC+TGG | + | chr2_2:11830053-11830072 | None:intergenic | 65.0% | |
| ATGTGTGGGGTGGGGTGGGG+AGG | + | chr2_2:11829128-11829147 | None:intergenic | 70.0% | |
| GGGCGACGACCAGTCATCCG+AGG | + | chr2_2:11829987-11830006 | None:intergenic | 70.0% | |
| GTGGGGTGGGGTGGGGAGGA+GGG | + | chr2_2:11829124-11829143 | None:intergenic | 75.0% | |
| TGTGGGGTGGGGTGGGGAGG+AGG | + | chr2_2:11829125-11829144 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 11827472 | 11830461 | 11827472 | ID=Msa0238400;Name=Msa0238400 |
| chr2_2 | mRNA | 11827472 | 11830461 | 11827472 | ID=Msa0238400-mRNA-1;Parent=Msa0238400;Name=Msa0238400-mRNA-1;_AED=0.05;_eAED=0.05;_QI=217|1|1|1|1|1|6|340|244 |
| chr2_2 | exon | 11827472 | 11827994 | 11827472 | ID=Msa0238400-mRNA-1:exon:5142;Parent=Msa0238400-mRNA-1 |
| chr2_2 | exon | 11828092 | 11828145 | 11828092 | ID=Msa0238400-mRNA-1:exon:5141;Parent=Msa0238400-mRNA-1 |
| chr2_2 | exon | 11828282 | 11828365 | 11828282 | ID=Msa0238400-mRNA-1:exon:5140;Parent=Msa0238400-mRNA-1 |
| chr2_2 | exon | 11828450 | 11828664 | 11828450 | ID=Msa0238400-mRNA-1:exon:5139;Parent=Msa0238400-mRNA-1 |
| chr2_2 | exon | 11829724 | 11829823 | 11829724 | ID=Msa0238400-mRNA-1:exon:5138;Parent=Msa0238400-mRNA-1 |
| chr2_2 | exon | 11830146 | 11830461 | 11830146 | ID=Msa0238400-mRNA-1:exon:5137;Parent=Msa0238400-mRNA-1 |
| chr2_2 | five_prime_UTR | 11830245 | 11830461 | 11830245 | ID=Msa0238400-mRNA-1:five_prime_utr;Parent=Msa0238400-mRNA-1 |
| chr2_2 | CDS | 11830146 | 11830244 | 11830146 | ID=Msa0238400-mRNA-1:cds;Parent=Msa0238400-mRNA-1 |
| chr2_2 | CDS | 11829724 | 11829823 | 11829724 | ID=Msa0238400-mRNA-1:cds;Parent=Msa0238400-mRNA-1 |
| chr2_2 | CDS | 11828450 | 11828664 | 11828450 | ID=Msa0238400-mRNA-1:cds;Parent=Msa0238400-mRNA-1 |
| chr2_2 | CDS | 11828282 | 11828365 | 11828282 | ID=Msa0238400-mRNA-1:cds;Parent=Msa0238400-mRNA-1 |
| chr2_2 | CDS | 11828092 | 11828145 | 11828092 | ID=Msa0238400-mRNA-1:cds;Parent=Msa0238400-mRNA-1 |
| chr2_2 | CDS | 11827812 | 11827994 | 11827812 | ID=Msa0238400-mRNA-1:cds;Parent=Msa0238400-mRNA-1 |
| chr2_2 | three_prime_UTR | 11827472 | 11827811 | 11827472 | ID=Msa0238400-mRNA-1:three_prime_utr;Parent=Msa0238400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
