Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196500 | XP_013462796.1 | 99.590 | 244 | 1 | 0 | 1 | 244 | 1 | 244 | 7.39e-179 | 501 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196500 | sp|Q9ZS88|DER22_ARATH | 88.525 | 244 | 28 | 0 | 1 | 244 | 1 | 244 | 2.08e-164 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196500 | I3STV7 | 99.590 | 244 | 1 | 0 | 1 | 244 | 1 | 244 | 3.53e-179 | 501 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0196500 | -0.814359 | 1.603801e-51 | -8.615850e-47 |
| Msa0054480 | Msa0196500 | -0.803622 | 3.193273e-49 | -8.615850e-47 |
| Msa0061290 | Msa0196500 | -0.814699 | 1.348664e-51 | -8.615850e-47 |
| Msa0091210 | Msa0196500 | 0.817860 | 2.648892e-52 | -8.615850e-47 |
| Msa0101810 | Msa0196500 | 0.828408 | 9.142179e-55 | -8.615850e-47 |
| Msa0115080 | Msa0196500 | -0.801673 | 8.057294e-49 | -8.615850e-47 |
| Msa0116770 | Msa0196500 | -0.810507 | 1.113696e-50 | -8.615850e-47 |
| Msa0152350 | Msa0196500 | -0.800939 | 1.138960e-48 | -8.615850e-47 |
| Msa0157290 | Msa0196500 | -0.814446 | 1.534104e-51 | -8.615850e-47 |
| Msa0165210 | Msa0196500 | -0.832895 | 7.279455e-56 | -8.615850e-47 |
| Msa0196500 | Msa0215320 | 0.855892 | 4.650795e-62 | -8.615850e-47 |
| Msa0196500 | Msa0223410 | 0.823475 | 1.358135e-53 | -8.615850e-47 |
| Msa0196500 | Msa0238400 | 0.939639 | 9.057454e-100 | -8.615850e-47 |
| Msa0196500 | Msa0279700 | -0.815618 | 8.428952e-52 | -8.615850e-47 |
| Msa0196500 | Msa0294560 | 0.809285 | 2.040237e-50 | -8.615850e-47 |
| Msa0196500 | Msa0316160 | 0.877972 | 4.089432e-69 | -8.615850e-47 |
| Msa0196500 | Msa0350870 | -0.802433 | 5.622336e-49 | -8.615850e-47 |
| Msa0196500 | Msa0351030 | -0.808996 | 2.353474e-50 | -8.615850e-47 |
| Msa0196500 | Msa0443260 | -0.807145 | 5.832899e-50 | -8.615850e-47 |
| Msa0196500 | Msa0524890 | 0.806369 | 8.507812e-50 | -8.615850e-47 |
| Msa0196500 | Msa0548280 | 0.802512 | 5.416210e-49 | -8.615850e-47 |
| Msa0196500 | Msa0574760 | 0.800454 | 1.430323e-48 | -8.615850e-47 |
| Msa0196500 | Msa0663380 | -0.805150 | 1.533617e-49 | -8.615850e-47 |
| Msa0196500 | Msa0731940 | -0.824751 | 6.810338e-54 | -8.615850e-47 |
| Msa0196500 | Msa0735170 | -0.809691 | 1.669913e-50 | -8.615850e-47 |
| Msa0196500 | Msa0756460 | -0.805350 | 1.392828e-49 | -8.615850e-47 |
| Msa0196500 | Msa0756630 | 0.803119 | 4.058246e-49 | -8.615850e-47 |
| Msa0196500 | Msa0757450 | 0.813765 | 2.168402e-51 | -8.615850e-47 |
| Msa0196500 | Msa0757500 | 0.834808 | 2.418854e-56 | -8.615850e-47 |
| Msa0196500 | Msa0766630 | -0.813096 | 3.042100e-51 | -8.615850e-47 |
| Msa0196500 | Msa0802470 | 0.848608 | 5.498728e-60 | -8.615850e-47 |
| Msa0196500 | Msa0810220 | -0.801111 | 1.050190e-48 | -8.615850e-47 |
| Msa0196500 | Msa0880140 | -0.812635 | 3.839526e-51 | -8.615850e-47 |
| Msa0196500 | Msa0907260 | -0.809971 | 1.453192e-50 | -8.615850e-47 |
| Msa0196500 | Msa0925290 | -0.804103 | 2.536800e-49 | -8.615850e-47 |
| Msa0196500 | Msa0926890 | -0.802227 | 6.200839e-49 | -8.615850e-47 |
| Msa0196500 | Msa0938220 | -0.806801 | 6.896249e-50 | -8.615850e-47 |
| Msa0196500 | Msa0959360 | -0.813948 | 1.976514e-51 | -8.615850e-47 |
| Msa0196500 | Msa0976670 | -0.804192 | 2.430105e-49 | -8.615850e-47 |
| Msa0196500 | Msa0990960 | -0.817235 | 3.663614e-52 | -8.615850e-47 |
| Msa0196500 | Msa0998690 | -0.803034 | 4.226408e-49 | -8.615850e-47 |
| Msa0196500 | Msa1003620 | -0.815726 | 7.973714e-52 | -8.615850e-47 |
| Msa0196500 | Msa1014540 | -0.839198 | 1.828883e-57 | -8.615850e-47 |
| Msa0196500 | Msa1019640 | -0.824485 | 7.868592e-54 | -8.615850e-47 |
| Msa0196500 | Msa1030970 | -0.813938 | 1.986930e-51 | -8.615850e-47 |
| Msa0196500 | Msa1046460 | -0.808344 | 3.243333e-50 | -8.615850e-47 |
| Msa0196500 | Msa1075220 | 0.812161 | 4.873363e-51 | -8.615850e-47 |
| Msa0196500 | Msa1075540 | -0.801475 | 8.849465e-49 | -8.615850e-47 |
| Msa0196500 | Msa1104370 | -0.831166 | 1.947419e-55 | -8.615850e-47 |
| Msa0196500 | Msa1150210 | -0.810163 | 1.321272e-50 | -8.615850e-47 |
| Msa0196500 | Msa1162550 | 0.802534 | 5.361442e-49 | -8.615850e-47 |
| Msa0196500 | Msa1186950 | 0.825231 | 5.245784e-54 | -8.615850e-47 |
| Msa0196500 | Msa1239720 | -0.809712 | 1.652009e-50 | -8.615850e-47 |
| Msa0196500 | Msa1263790 | -0.818551 | 1.847556e-52 | -8.615850e-47 |
| Msa0196500 | Msa1280420 | -0.800375 | 1.484694e-48 | -8.615850e-47 |
| Msa0196500 | Msa1282580 | 0.814536 | 1.465495e-51 | -8.615850e-47 |
| Msa0196500 | Msa1283860 | -0.800915 | 1.152168e-48 | -8.615850e-47 |
| Msa0196500 | Msa1284680 | -0.813683 | 2.261377e-51 | -8.615850e-47 |
| Msa0196500 | Msa1348490 | -0.803168 | 3.965820e-49 | -8.615850e-47 |
| Msa0196500 | Msa1360060 | -0.803006 | 4.283300e-49 | -8.615850e-47 |
| Msa0196500 | Msa1372760 | -0.811550 | 6.619526e-51 | -8.615850e-47 |
| Msa0196500 | Msa1442210 | -0.800244 | 1.578449e-48 | -8.615850e-47 |
| Msa0196500 | Msa1451620 | 0.800163 | 1.639296e-48 | -8.615850e-47 |
| Msa0196500 | Msa1466540 | -0.804996 | 1.651546e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196500 | MtrunA17_Chr2g0288201 | 99.590 | 244 | 1 | 0 | 1 | 244 | 1 | 244 | 0.0 | 501 |
| Msa0196500 | MtrunA17_Chr8g0389711 | 37.118 | 229 | 130 | 3 | 7 | 230 | 6 | 225 | 4.63e-42 | 143 |
| Msa0196500 | MtrunA17_Chr3g0079071 | 35.681 | 213 | 128 | 2 | 7 | 219 | 6 | 209 | 1.13e-36 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196500 | AT4G04860.1 | 88.525 | 244 | 28 | 0 | 1 | 244 | 1 | 244 | 2.11e-165 | 457 |
| Msa0196500 | AT4G21810.1 | 88.525 | 244 | 28 | 0 | 1 | 244 | 1 | 244 | 2.11e-162 | 449 |
| Msa0196500 | AT4G29330.2 | 40.566 | 212 | 117 | 2 | 7 | 218 | 6 | 208 | 4.91e-49 | 160 |
| Msa0196500 | AT4G29330.1 | 39.906 | 213 | 119 | 2 | 7 | 219 | 6 | 209 | 2.05e-48 | 160 |
Find 88 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGTGTTAATTAAGATTA+AGG | 0.202055 | 2_1:-13690684 | Msa0196500:five_prime_UTR |
| CAATCTTGGTGGAGTTCTTC+AGG | 0.237760 | 2_1:+13688241 | None:intergenic |
| TGAAGGAACGAGAAATTTAA+AGG | 0.257874 | 2_1:+13690724 | None:intergenic |
| TAACAATTGCACCCGGAAAA+AGG | 0.258276 | 2_1:+13688147 | None:intergenic |
| TATTGCTTCACAACCAATCT+AGG | 0.280355 | 2_1:+13690210 | None:intergenic |
| GCAGGCCGGGCAACAACAAC+TGG | 0.297242 | 2_1:+13688289 | None:intergenic |
| TCCTTGTTGGTGCCAGTGCT+TGG | 0.326989 | 2_1:-13688532 | Msa0196500:CDS |
| TTACTAATTTCTTGTACTTC+AGG | 0.333044 | 2_1:-13690170 | Msa0196500:CDS |
| TGTGATTAATCAGAGAAAAT+TGG | 0.336855 | 2_1:+13690754 | None:intergenic |
| GGTGGAGTTCTTCAGGTTGC+GGG | 0.338628 | 2_1:+13688248 | None:intergenic |
| TAGGAAGCTCATGTGAATAA+AGG | 0.338635 | 2_1:+13688746 | None:intergenic |
| TTATGAATGTAGGTTCTCTT+GGG | 0.342033 | 2_1:-13688563 | Msa0196500:intron |
| TGACTGGAATCGTTCTCCTT+GGG | 0.352195 | 2_1:-13688950 | Msa0196500:CDS |
| TTTATGAATGTAGGTTCTCT+TGG | 0.362898 | 2_1:-13688564 | Msa0196500:intron |
| TTCTAGAGGAGAACTCGTTC+AGG | 0.364345 | 2_1:-13689022 | Msa0196500:CDS |
| TCACTGCTGCCTACCTTCCA+TGG | 0.372156 | 2_1:-13688710 | Msa0196500:CDS |
| TTGGGGTTCTCTGTCCTTGT+TGG | 0.373603 | 2_1:-13688545 | Msa0196500:CDS |
| TTTCTTGTACTTCAGGAAGA+TGG | 0.384049 | 2_1:-13690163 | Msa0196500:CDS |
| TCTCATTTCTGTTAAAACTT+TGG | 0.389968 | 2_1:+13688093 | None:intergenic |
| TGACAAAGACCATTCAATCT+TGG | 0.400281 | 2_1:+13688227 | None:intergenic |
| TCTGTACTTGAACCCTAGAT+TGG | 0.401436 | 2_1:-13690223 | Msa0196500:CDS |
| TTGTGAAGCAATATCAGTTT+TGG | 0.401770 | 2_1:-13690200 | Msa0196500:CDS |
| TTTATTCACATGAGCTTCCT+AGG | 0.416327 | 2_1:-13688744 | Msa0196500:CDS |
| TTGACTGGAATCGTTCTCCT+TGG | 0.416727 | 2_1:-13688951 | Msa0196500:CDS |
| GATGACTGTAAGACTACAAA+TGG | 0.417771 | 2_1:+13688024 | None:intergenic |
| TGGTGGAGTTCTTCAGGTTG+CGG | 0.424337 | 2_1:+13688247 | None:intergenic |
| AGGAAGCTCATGTGAATAAA+GGG | 0.430778 | 2_1:+13688747 | None:intergenic |
| CCTTGTTGGTGCCAGTGCTT+GGG | 0.434475 | 2_1:-13688531 | Msa0196500:CDS |
| GAAGGAACGAGAAATTTAAA+GGG | 0.438450 | 2_1:+13690725 | None:intergenic |
| CACTGCTGCCTACCTTCCAT+GGG | 0.440571 | 2_1:-13688709 | Msa0196500:intron |
| CAGTGCTTGGGTAGATCTAC+TGG | 0.443686 | 2_1:-13688519 | Msa0196500:intron |
| ATGACCCAGTTGTTGTTGCC+CGG | 0.447553 | 2_1:-13688294 | Msa0196500:CDS |
| CAAATCTAACATTGGCAGGC+CGG | 0.461355 | 2_1:+13688275 | None:intergenic |
| CGAGAAGGAAGAGGAAGAAG+AGG | 0.464990 | 2_1:+13690833 | None:intergenic |
| TTTGGGGCCACTGTATTGAC+TGG | 0.469493 | 2_1:-13688966 | Msa0196500:CDS |
| TTCTTGTACTTCAGGAAGAT+GGG | 0.470662 | 2_1:-13690162 | Msa0196500:intron |
| CAACTCATTGACATTTATGA+TGG | 0.474921 | 2_1:-13688877 | Msa0196500:intron |
| GCAGCAAATCTAACATTGGC+AGG | 0.478288 | 2_1:+13688271 | None:intergenic |
| AGAAGAGAACGAGAAGGAAG+AGG | 0.481635 | 2_1:+13690824 | None:intergenic |
| GATGTCTATCCTCGGATGAC+TGG | 0.483782 | 2_1:-13688364 | Msa0196500:CDS |
| AAATCTAACATTGGCAGGCC+GGG | 0.488090 | 2_1:+13688276 | None:intergenic |
| GCAAACGACTCTGACAAGTA+AGG | 0.501809 | 2_1:+13688918 | None:intergenic |
| AGAGAAACTACTAGATGCCC+AGG | 0.504340 | 2_1:+13687963 | None:intergenic |
| CAAAGACCATTCAATCTTGG+TGG | 0.513494 | 2_1:+13688230 | None:intergenic |
| AGAACTCCACCAAGATTGAA+TGG | 0.519731 | 2_1:-13688236 | Msa0196500:exon |
| TGGCACAAGCGGTTGAAGAA+TGG | 0.522603 | 2_1:-13690647 | Msa0196500:CDS |
| TTCTTGAAGATGTCTATCCT+CGG | 0.524401 | 2_1:-13688372 | Msa0196500:CDS |
| GACTGGAATCGTTCTCCTTG+GGG | 0.528315 | 2_1:-13688949 | Msa0196500:CDS |
| TCTAGAGGAGAACTCGTTCA+GGG | 0.529586 | 2_1:-13689021 | Msa0196500:CDS |
| TATGAATGTAGGTTCTCTTG+GGG | 0.532545 | 2_1:-13688562 | Msa0196500:intron |
| TAGCTATATATTACAAACTT+CGG | 0.532920 | 2_1:+13688184 | None:intergenic |
| CAGTGAAAGTAAAGAGACCT+AGG | 0.533734 | 2_1:+13688727 | None:intergenic |
| TATCTACAAGAACAGAAAAG+AGG | 0.538841 | 2_1:+13688060 | None:intergenic |
| GGGTTCAAGTACAGATGATA+CGG | 0.543090 | 2_1:+13690231 | None:intergenic |
| CTTCAAGAAAATAGTAAGCA+TGG | 0.545004 | 2_1:+13688386 | None:intergenic |
| AGATATGATCGTGTGATCAC+AGG | 0.550700 | 2_1:+13690612 | None:intergenic |
| GCTGCTGTTGTCACCACCAT+CGG | 0.555013 | 2_1:-13690585 | Msa0196500:CDS |
| CATTGGATGAAAGACTGCCC+TGG | 0.561176 | 2_1:-13687981 | Msa0196500:three_prime_UTR |
| ATTGCTTCACAACCAATCTA+GGG | 0.565167 | 2_1:+13690211 | None:intergenic |
| CTGTAAGACTACAAATGGAA+TGG | 0.570478 | 2_1:+13688029 | None:intergenic |
| TTATAATAAGAAATATATGA+AGG | 0.580338 | 2_1:+13690707 | None:intergenic |
| AAAACTTTGGTCATTCGACA+TGG | 0.592840 | 2_1:+13688106 | None:intergenic |
| TTGGATGGAAATTGATGTGA+CGG | 0.595540 | 2_1:+13690789 | None:intergenic |
| CAGTAGATCTACCCAAGCAC+TGG | 0.595736 | 2_1:+13688520 | None:intergenic |
| CGGGGCAGCAAATCTAACAT+TGG | 0.599597 | 2_1:+13688267 | None:intergenic |
| ATTAACAACAATGGCACAAG+CGG | 0.606576 | 2_1:-13690658 | Msa0196500:exon |
| TACCTCAAGGGAACATCCGA+TGG | 0.606851 | 2_1:+13690569 | None:intergenic |
| CAGGCCGGGCAACAACAACT+GGG | 0.607750 | 2_1:+13688290 | None:intergenic |
| CCCAAGCACTGGCACCAACA+AGG | 0.610622 | 2_1:+13688531 | None:intergenic |
| ACTGGAATCGTTCTCCTTGG+GGG | 0.615364 | 2_1:-13688948 | Msa0196500:CDS |
| AGAAATTGGTTATACCTCAA+GGG | 0.617369 | 2_1:+13690557 | None:intergenic |
| TAAATGTCAATGAGTTGCTG+AGG | 0.618115 | 2_1:+13688883 | None:intergenic |
| CTTACGCACCCATGGAAGGT+AGG | 0.622292 | 2_1:+13688701 | None:intergenic |
| ATTGGATGAAAGACTGCCCT+GGG | 0.623145 | 2_1:-13687980 | Msa0196500:three_prime_UTR |
| CGTAGAAGAAGAGAACGAGA+AGG | 0.624650 | 2_1:+13690818 | None:intergenic |
| GTAGCTTACGCACCCATGGA+AGG | 0.624745 | 2_1:+13688697 | None:intergenic |
| TTAAGGAAAATTAACAACAA+TGG | 0.632633 | 2_1:-13690667 | Msa0196500:exon |
| TCGGTACTGCAAGCTTCTAG+AGG | 0.636595 | 2_1:-13689036 | Msa0196500:CDS |
| TCAGAAAATACTCAGCGAAG+TGG | 0.637547 | 2_1:-13688207 | Msa0196500:three_prime_UTR |
| GTGGAGTTCTTCAGGTTGCG+GGG | 0.652676 | 2_1:+13688249 | None:intergenic |
| CTCAAGGGAACATCCGATGG+TGG | 0.657809 | 2_1:+13690572 | None:intergenic |
| GGGCGACGACCAGTCATCCG+AGG | 0.661193 | 2_1:+13688355 | None:intergenic |
| CTAGAGGAGAACTCGTTCAG+GGG | 0.664370 | 2_1:-13689020 | Msa0196500:CDS |
| CACCATCGGATGTTCCCTTG+AGG | 0.668525 | 2_1:-13690571 | Msa0196500:intron |
| ATGTAATTAACAATTGCACC+CGG | 0.669033 | 2_1:+13688140 | None:intergenic |
| AATAGTGCTTTGATGAGCGA+TGG | 0.681563 | 2_1:+13688322 | None:intergenic |
| AACGATTCCAGTCAATACAG+TGG | 0.704187 | 2_1:+13688959 | None:intergenic |
| GAGAAACTACTAGATGCCCA+GGG | 0.706595 | 2_1:+13687964 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAATAAGAAATATATGA+AGG | + | chr2_1:13688067-13688086 | None:intergenic | 10.0% |
| !!! | ATAAATAGAAAATCTTTTAA+AGG | + | chr2_1:13688791-13688810 | None:intergenic | 10.0% |
| !!! | GTTTTTTTTGGTTTAATATT+TGG | - | chr2_1:13688384-13688403 | Msa0196500:CDS | 15.0% |
| !!! | TCTTTTTACCTTTTTTTTAT+AGG | - | chr2_1:13688644-13688663 | Msa0196500:intron | 15.0% |
| !!! | ATTTTAAGTTTTATGAATGT+AGG | - | chr2_1:13690198-13690217 | Msa0196500:CDS | 15.0% |
| !! | TCAAGTGTTAATTAAGATTA+AGG | - | chr2_1:13688087-13688106 | Msa0196500:three_prime_UTR | 20.0% |
| !! | TTAAGGAAAATTAACAACAA+TGG | - | chr2_1:13688104-13688123 | Msa0196500:three_prime_UTR | 20.0% |
| !!! | CAATTTCTTCTCAATTTTTA+GGG | - | chr2_1:13688229-13688248 | Msa0196500:exon | 20.0% |
| !!! | ATTTTTTTCTCTCGTAATTA+TGG | - | chr2_1:13688258-13688277 | Msa0196500:CDS | 20.0% |
| !! | TAATTATGGTGTGTTTAATT+TGG | - | chr2_1:13688272-13688291 | Msa0196500:CDS | 20.0% |
| !! | GTTTCAAATTAATGTACTAA+CGG | + | chr2_1:13688337-13688356 | None:intergenic | 20.0% |
| !!! | AAATGGTGTTAGAAAATTAT+CGG | - | chr2_1:13688668-13688687 | Msa0196500:intron | 20.0% |
| !!! | TTGAATGTTTTTTTCTTCAA+TGG | - | chr2_1:13689000-13689019 | Msa0196500:CDS | 20.0% |
| !! | TCGTAATCTAGTATATTTAT+GGG | + | chr2_1:13689245-13689264 | None:intergenic | 20.0% |
| !! | TTCACAATTATCAACTTATA+AGG | + | chr2_1:13689636-13689655 | None:intergenic | 20.0% |
| !! | TATTGAATAAGAAAATACCA+TGG | + | chr2_1:13689676-13689695 | None:intergenic | 20.0% |
| !!! | TAAGAGCATGTAAAAAAAAT+CGG | + | chr2_1:13689785-13689804 | None:intergenic | 20.0% |
| !!! | TTTTTTTACATGCTCTTATT+TGG | - | chr2_1:13689787-13689806 | Msa0196500:intron | 20.0% |
| !!! | TTTTTTACATGCTCTTATTT+GGG | - | chr2_1:13689788-13689807 | Msa0196500:intron | 20.0% |
| !! | AACCTGAAAAAGATAAATTA+AGG | + | chr2_1:13689983-13690002 | None:intergenic | 20.0% |
| !! | TGATATGATAACATTAAACT+GGG | - | chr2_1:13690109-13690128 | Msa0196500:intron | 20.0% |
| !! | GAAATTAAATAGTCATATCA+TGG | + | chr2_1:13690305-13690324 | None:intergenic | 20.0% |
| !! | TAGCTATATATTACAAACTT+CGG | + | chr2_1:13690590-13690609 | None:intergenic | 20.0% |
| !!! | TTTTTATGTTCTTATTGCAT+TGG | - | chr2_1:13690773-13690792 | Msa0196500:five_prime_UTR | 20.0% |
| !!! | TATTTTTCTACTGTTTGAAA+AGG | - | chr2_1:13690868-13690887 | Msa0196500:five_prime_UTR | 20.0% |
| ! | AAATTGGAAAAAGTGAGATT+TGG | + | chr2_1:13688004-13688023 | None:intergenic | 25.0% |
| ! | TGTGATTAATCAGAGAAAAT+TGG | + | chr2_1:13688020-13688039 | None:intergenic | 25.0% |
| ! | CCTAAAAATTGAGAAGAAAT+TGG | + | chr2_1:13688231-13688250 | None:intergenic | 25.0% |
| !! | CCAATTTCTTCTCAATTTTT+AGG | - | chr2_1:13688228-13688247 | Msa0196500:exon | 25.0% |
| ! | AATGCACACAATTAATGATT+TGG | + | chr2_1:13688359-13688378 | None:intergenic | 25.0% |
| !!! | GTGCATTAACAAGTTTTTTT+TGG | - | chr2_1:13688372-13688391 | Msa0196500:CDS | 25.0% |
| !! | TTTGGTTTAATATTTGGAAG+AGG | - | chr2_1:13688390-13688409 | Msa0196500:CDS | 25.0% |
| !! | GTTGCAATTTGATATTCTTT+TGG | - | chr2_1:13688434-13688453 | Msa0196500:intron | 25.0% |
| !! | TGATTTTGCAGTTAATTGAT+TGG | - | chr2_1:13688485-13688504 | Msa0196500:intron | 25.0% |
| ! | TTACTAATTTCTTGTACTTC+AGG | - | chr2_1:13688601-13688620 | Msa0196500:intron | 25.0% |
| !!! | ACCTTTTTTTTATAGGCAAA+TGG | - | chr2_1:13688651-13688670 | Msa0196500:intron | 25.0% |
| ! | ACCATTTGCCTATAAAAAAA+AGG | + | chr2_1:13688655-13688674 | None:intergenic | 25.0% |
| !!! | AGAAAATCTTTTAAAGGTGA+AGG | + | chr2_1:13688785-13688804 | None:intergenic | 25.0% |
| !! | GATTTTCTATTTATTGCGAT+TGG | - | chr2_1:13688797-13688816 | Msa0196500:intron | 25.0% |
| ! | ACAACATTAATTAGTGATGT+AGG | + | chr2_1:13688865-13688884 | None:intergenic | 25.0% |
| ! | TAATGTTGTTAACATTCTTG+TGG | - | chr2_1:13688876-13688895 | Msa0196500:intron | 25.0% |
| ! | AATGAAAGCTATGTTGTATT+TGG | - | chr2_1:13689141-13689160 | Msa0196500:intron | 25.0% |
| ! | CTCGTAATCTAGTATATTTA+TGG | + | chr2_1:13689246-13689265 | None:intergenic | 25.0% |
| ! | GTTGAAATTTGAGAAATTGA+TGG | - | chr2_1:13689446-13689465 | Msa0196500:intron | 25.0% |
| ! | AATAATCTCTTGATACAAAG+TGG | - | chr2_1:13689495-13689514 | Msa0196500:intron | 25.0% |
| ! | ATAATCTCTTGATACAAAGT+GGG | - | chr2_1:13689496-13689515 | Msa0196500:intron | 25.0% |
| !!! | AGGCATTGATTATACAATAT+AGG | + | chr2_1:13689598-13689617 | None:intergenic | 25.0% |
| ! | TAAGGATTAAATATACATGC+AGG | + | chr2_1:13689618-13689637 | None:intergenic | 25.0% |
| ! | TTATTTATTTAACTGTGCCA+TGG | - | chr2_1:13689656-13689675 | Msa0196500:intron | 25.0% |
| !!! | TTCATATGTTTTTTCTTGCT+CGG | - | chr2_1:13689716-13689735 | Msa0196500:intron | 25.0% |
| !!! | TTTTTACATGCTCTTATTTG+GGG | - | chr2_1:13689789-13689808 | Msa0196500:intron | 25.0% |
| !! | AGCCTTAATTTATCTTTTTC+AGG | - | chr2_1:13689978-13689997 | Msa0196500:intron | 25.0% |
| !!! | ATCTTTTTCAGGTTTATGTA+TGG | - | chr2_1:13689989-13690008 | Msa0196500:intron | 25.0% |
| ! | CAGTTTAATGTTATCATATC+AGG | + | chr2_1:13690110-13690129 | None:intergenic | 25.0% |
| ! | CTGATATGATAACATTAAAC+TGG | - | chr2_1:13690108-13690127 | Msa0196500:intron | 25.0% |
| ! | TGGTATATGTATTCTTTGAA+TGG | + | chr2_1:13690285-13690304 | None:intergenic | 25.0% |
| !! | TCTATTTTCAAACCTTTTTC+CGG | - | chr2_1:13690612-13690631 | Msa0196500:CDS | 25.0% |
| ! | TCTCATTTCTGTTAAAACTT+TGG | + | chr2_1:13690681-13690700 | None:intergenic | 25.0% |
| GAAGGAACGAGAAATTTAAA+GGG | + | chr2_1:13688049-13688068 | None:intergenic | 30.0% | |
| TGAAGGAACGAGAAATTTAA+AGG | + | chr2_1:13688050-13688069 | None:intergenic | 30.0% | |
| AGAAATTGGTTATACCTCAA+GGG | + | chr2_1:13688217-13688236 | None:intergenic | 30.0% | |
| AAGAAATTGGTTATACCTCA+AGG | + | chr2_1:13688218-13688237 | None:intergenic | 30.0% | |
| ! | TTGTGAAGCAATATCAGTTT+TGG | - | chr2_1:13688571-13688590 | Msa0196500:intron | 30.0% |
| !!! | TTATCGGCTTCCTTAATTTT+CGG | - | chr2_1:13688684-13688703 | Msa0196500:intron | 30.0% |
| AGTTCAAACTCCGAAAATTA+AGG | + | chr2_1:13688697-13688716 | None:intergenic | 30.0% | |
| ! | AATTTTCGGAGTTTGAACTT+TGG | - | chr2_1:13688698-13688717 | Msa0196500:intron | 30.0% |
| ! | TCTATTTATTGCGATTGGTT+TGG | - | chr2_1:13688802-13688821 | Msa0196500:intron | 30.0% |
| !! | TCTGTTTTTCATTTCGTTGT+TGG | - | chr2_1:13688900-13688919 | Msa0196500:CDS | 30.0% |
| !! | GAGTATTGGTCATTTGTAAT+TGG | - | chr2_1:13689047-13689066 | Msa0196500:CDS | 30.0% |
| !! | CATTTTAGTAACAATGACAC+CGG | - | chr2_1:13689115-13689134 | Msa0196500:intron | 30.0% |
| ! | CCTAATTTGTAATGCAAGAA+GGG | + | chr2_1:13689350-13689369 | None:intergenic | 30.0% |
| ! | ACCTAATTTGTAATGCAAGA+AGG | + | chr2_1:13689351-13689370 | None:intergenic | 30.0% |
| ! | CAAATTAGGTAAAGCTGTTT+TGG | - | chr2_1:13689361-13689380 | Msa0196500:intron | 30.0% |
| TCTTATTCAATATGCAGACT+TGG | - | chr2_1:13689684-13689703 | Msa0196500:intron | 30.0% | |
| CAACTCATTGACATTTATGA+TGG | - | chr2_1:13689894-13689913 | Msa0196500:intron | 30.0% | |
| !! | AATTAAGGCTTTAGATGAGA+GGG | + | chr2_1:13689968-13689987 | None:intergenic | 30.0% |
| !! | AAATTAAGGCTTTAGATGAG+AGG | + | chr2_1:13689969-13689988 | None:intergenic | 30.0% |
| TTTATGAATGTAGGTTCTCT+TGG | - | chr2_1:13690207-13690226 | Msa0196500:CDS | 30.0% | |
| TTATGAATGTAGGTTCTCTT+GGG | - | chr2_1:13690208-13690227 | Msa0196500:CDS | 30.0% | |
| ! | AATCTTGACAACATTTTCCA+GGG | - | chr2_1:13690350-13690369 | Msa0196500:intron | 30.0% |
| CTTCAAGAAAATAGTAAGCA+TGG | + | chr2_1:13690388-13690407 | None:intergenic | 30.0% | |
| ! | CTATTTTCAAACCTTTTTCC+GGG | - | chr2_1:13690613-13690632 | Msa0196500:CDS | 30.0% |
| ATGTAATTAACAATTGCACC+CGG | + | chr2_1:13690634-13690653 | None:intergenic | 30.0% | |
| TATCTACAAGAACAGAAAAG+AGG | + | chr2_1:13690714-13690733 | None:intergenic | 30.0% | |
| TTGGATGGAAATTGATGTGA+CGG | + | chr2_1:13687985-13688004 | None:intergenic | 35.0% | |
| TGGAAAAAGTGAGATTTGGA+TGG | + | chr2_1:13688000-13688019 | None:intergenic | 35.0% | |
| ATTAACAACAATGGCACAAG+CGG | - | chr2_1:13688113-13688132 | Msa0196500:three_prime_UTR | 35.0% | |
| ATTGCTTCACAACCAATCTA+GGG | + | chr2_1:13688563-13688582 | None:intergenic | 35.0% | |
| TATTGCTTCACAACCAATCT+AGG | + | chr2_1:13688564-13688583 | None:intergenic | 35.0% | |
| TTTCTTGTACTTCAGGAAGA+TGG | - | chr2_1:13688608-13688627 | Msa0196500:intron | 35.0% | |
| TTCTTGTACTTCAGGAAGAT+GGG | - | chr2_1:13688609-13688628 | Msa0196500:intron | 35.0% | |
| ! | CGCTAAAGAAGTTCTAACTA+AGG | + | chr2_1:13688725-13688744 | None:intergenic | 35.0% |
| !! | ATTTATTGCGATTGGTTTGG+CGG | - | chr2_1:13688805-13688824 | Msa0196500:intron | 35.0% |
| GTGATGTAGGCACATTAAAA+CGG | + | chr2_1:13688852-13688871 | None:intergenic | 35.0% | |
| !!! | GATTGTTTTTTTGCACGTGT+GGG | - | chr2_1:13688926-13688945 | Msa0196500:CDS | 35.0% |
| !!! | TTTTTTTCTTCAATGGCGTG+TGG | - | chr2_1:13689007-13689026 | Msa0196500:CDS | 35.0% |
| !!! | TTTTTTCTTCAATGGCGTGT+GGG | - | chr2_1:13689008-13689027 | Msa0196500:CDS | 35.0% |
| ! | TGGTCACTTATAAAGTACCA+TGG | - | chr2_1:13689067-13689086 | Msa0196500:CDS | 35.0% |
| ! | GGTCACTTATAAAGTACCAT+GGG | - | chr2_1:13689068-13689087 | Msa0196500:CDS | 35.0% |
| ATGGGTTTAATCCTTGCATT+GGG | - | chr2_1:13689086-13689105 | Msa0196500:intron | 35.0% | |
| AAATGTGATTTCCCAATGCA+AGG | + | chr2_1:13689100-13689119 | None:intergenic | 35.0% | |
| CAACATAGCTTTCATTTCAC+CGG | + | chr2_1:13689137-13689156 | None:intergenic | 35.0% | |
| GGTCAAGTGCAAATATAAAG+CGG | + | chr2_1:13689313-13689332 | None:intergenic | 35.0% | |
| CCCTTCTTGCATTACAAATT+AGG | - | chr2_1:13689347-13689366 | Msa0196500:intron | 35.0% | |
| TTTCAACCCTCTTACTGTAT+AGG | + | chr2_1:13689433-13689452 | None:intergenic | 35.0% | |
| AAACGAAAACAGAGATGTGT+GGG | + | chr2_1:13689574-13689593 | None:intergenic | 35.0% | |
| AAAACGAAAACAGAGATGTG+TGG | + | chr2_1:13689575-13689594 | None:intergenic | 35.0% | |
| TAAATGTCAATGAGTTGCTG+AGG | + | chr2_1:13689891-13689910 | None:intergenic | 35.0% | |
| GATGAGAGGGTTTAAATATG+AGG | + | chr2_1:13689955-13689974 | None:intergenic | 35.0% | |
| AGGAAGCTCATGTGAATAAA+GGG | + | chr2_1:13690027-13690046 | None:intergenic | 35.0% | |
| TAGGAAGCTCATGTGAATAA+AGG | + | chr2_1:13690028-13690047 | None:intergenic | 35.0% | |
| TTTATTCACATGAGCTTCCT+AGG | - | chr2_1:13690027-13690046 | Msa0196500:intron | 35.0% | |
| TATGAATGTAGGTTCTCTTG+GGG | - | chr2_1:13690209-13690228 | Msa0196500:CDS | 35.0% | |
| ! | GAATCTTGACAACATTTTCC+AGG | - | chr2_1:13690349-13690368 | Msa0196500:intron | 35.0% |
| TTCTTGAAGATGTCTATCCT+CGG | - | chr2_1:13690399-13690418 | Msa0196500:intron | 35.0% | |
| TGACAAAGACCATTCAATCT+TGG | + | chr2_1:13690547-13690566 | None:intergenic | 35.0% | |
| AAAACTTTGGTCATTCGACA+TGG | + | chr2_1:13690668-13690687 | None:intergenic | 35.0% | |
| CTGTAAGACTACAAATGGAA+TGG | + | chr2_1:13690745-13690764 | None:intergenic | 35.0% | |
| GATGACTGTAAGACTACAAA+TGG | + | chr2_1:13690750-13690769 | None:intergenic | 35.0% | |
| AGATATGATCGTGTGATCAC+AGG | + | chr2_1:13688162-13688181 | None:intergenic | 40.0% | |
| GGGTTCAAGTACAGATGATA+CGG | + | chr2_1:13688543-13688562 | None:intergenic | 40.0% | |
| TCTGTACTTGAACCCTAGAT+TGG | - | chr2_1:13688548-13688567 | Msa0196500:CDS | 40.0% | |
| !! | GCAATATCAGTTTTGGCGTT+TGG | - | chr2_1:13688578-13688597 | Msa0196500:intron | 40.0% |
| !!! | CGATTGTTTTTTTGCACGTG+TGG | - | chr2_1:13688925-13688944 | Msa0196500:CDS | 40.0% |
| AAACACACGTGCAATAGAGA+GGG | + | chr2_1:13688982-13689001 | None:intergenic | 40.0% | |
| GAATGTGATTGAGCGAGTAT+TGG | - | chr2_1:13689033-13689052 | Msa0196500:CDS | 40.0% | |
| CAATGCAAGGATTAAACCCA+TGG | + | chr2_1:13689087-13689106 | None:intergenic | 40.0% | |
| CATGGGTTTAATCCTTGCAT+TGG | - | chr2_1:13689085-13689104 | Msa0196500:intron | 40.0% | |
| ! | TATTTGGAGCAACAGAAGTG+AGG | - | chr2_1:13689157-13689176 | Msa0196500:intron | 40.0% |
| TGAGGAGTGGTTATTGCTAT+AGG | - | chr2_1:13689175-13689194 | Msa0196500:intron | 40.0% | |
| AGAAGGGAACTAGGCTATTA+AGG | + | chr2_1:13689334-13689353 | None:intergenic | 40.0% | |
| TGTAATGCAAGAAGGGAACT+AGG | + | chr2_1:13689343-13689362 | None:intergenic | 40.0% | |
| !!! | AGGTAAAGCTGTTTTGGTCA+TGG | - | chr2_1:13689367-13689386 | Msa0196500:intron | 40.0% |
| AATGCGTCCTATACAGTAAG+AGG | - | chr2_1:13689423-13689442 | Msa0196500:intron | 40.0% | |
| ATGCGTCCTATACAGTAAGA+GGG | - | chr2_1:13689424-13689443 | Msa0196500:intron | 40.0% | |
| AACGAAAACAGAGATGTGTG+GGG | + | chr2_1:13689573-13689592 | None:intergenic | 40.0% | |
| AACGATTCCAGTCAATACAG+TGG | + | chr2_1:13689815-13689834 | None:intergenic | 40.0% | |
| CAGTGAAAGTAAAGAGACCT+AGG | + | chr2_1:13690047-13690066 | None:intergenic | 40.0% | |
| ! | ATTTTCCAGGGAATGATTGC+TGG | - | chr2_1:13690362-13690381 | Msa0196500:intron | 40.0% |
| !! | ATGAGCGATGGTGTTTTAAG+GGG | + | chr2_1:13690440-13690459 | None:intergenic | 40.0% |
| !! | GATGAGCGATGGTGTTTTAA+GGG | + | chr2_1:13690441-13690460 | None:intergenic | 40.0% |
| ! | TGATGAGCGATGGTGTTTTA+AGG | + | chr2_1:13690442-13690461 | None:intergenic | 40.0% |
| AATAGTGCTTTGATGAGCGA+TGG | + | chr2_1:13690452-13690471 | None:intergenic | 40.0% | |
| AGAACTCCACCAAGATTGAA+TGG | - | chr2_1:13690535-13690554 | Msa0196500:intron | 40.0% | |
| CAAAGACCATTCAATCTTGG+TGG | + | chr2_1:13690544-13690563 | None:intergenic | 40.0% | |
| TCAGAAAATACTCAGCGAAG+TGG | - | chr2_1:13690564-13690583 | Msa0196500:intron | 40.0% | |
| TAACAATTGCACCCGGAAAA+AGG | + | chr2_1:13690627-13690646 | None:intergenic | 40.0% | |
| AGAAGAGAACGAGAAGGAAG+AGG | + | chr2_1:13687950-13687969 | None:intergenic | 45.0% | |
| CGTAGAAGAAGAGAACGAGA+AGG | + | chr2_1:13687956-13687975 | None:intergenic | 45.0% | |
| TTCCAACCGTGTTACCTACT+TGG | - | chr2_1:13688755-13688774 | Msa0196500:CDS | 45.0% | |
| TCCAACCGTGTTACCTACTT+GGG | - | chr2_1:13688756-13688775 | Msa0196500:CDS | 45.0% | |
| CAAACACACGTGCAATAGAG+AGG | + | chr2_1:13688983-13689002 | None:intergenic | 45.0% | |
| AAAACAGAGATGTGTGGGGT+GGG | + | chr2_1:13689569-13689588 | None:intergenic | 45.0% | |
| ! | TTCTAGAGGAGAACTCGTTC+AGG | - | chr2_1:13689749-13689768 | Msa0196500:intron | 45.0% |
| TCTAGAGGAGAACTCGTTCA+GGG | - | chr2_1:13689750-13689769 | Msa0196500:intron | 45.0% | |
| TTGACTGGAATCGTTCTCCT+TGG | - | chr2_1:13689820-13689839 | Msa0196500:intron | 45.0% | |
| TGACTGGAATCGTTCTCCTT+GGG | - | chr2_1:13689821-13689840 | Msa0196500:intron | 45.0% | |
| ! | AGTAAGGTATCATTCCCCCA+AGG | + | chr2_1:13689840-13689859 | None:intergenic | 45.0% |
| GCAAACGACTCTGACAAGTA+AGG | + | chr2_1:13689856-13689875 | None:intergenic | 45.0% | |
| !!! | TGAGCGATGGTGTTTTAAGG+GGG | + | chr2_1:13690439-13690458 | None:intergenic | 45.0% |
| AAATCTAACATTGGCAGGCC+GGG | + | chr2_1:13690498-13690517 | None:intergenic | 45.0% | |
| CAAATCTAACATTGGCAGGC+CGG | + | chr2_1:13690499-13690518 | None:intergenic | 45.0% | |
| GCAGCAAATCTAACATTGGC+AGG | + | chr2_1:13690503-13690522 | None:intergenic | 45.0% | |
| CAATCTTGGTGGAGTTCTTC+AGG | + | chr2_1:13690533-13690552 | None:intergenic | 45.0% | |
| ATTGGATGAAAGACTGCCCT+GGG | - | chr2_1:13690791-13690810 | Msa0196500:five_prime_UTR | 45.0% | |
| GAGAAACTACTAGATGCCCA+GGG | + | chr2_1:13690810-13690829 | None:intergenic | 45.0% | |
| AGAGAAACTACTAGATGCCC+AGG | + | chr2_1:13690811-13690830 | None:intergenic | 45.0% | |
| CGAGAAGGAAGAGGAAGAAG+AGG | + | chr2_1:13687941-13687960 | None:intergenic | 50.0% | |
| TGGCACAAGCGGTTGAAGAA+TGG | - | chr2_1:13688124-13688143 | Msa0196500:three_prime_UTR | 50.0% | |
| TACCTCAAGGGAACATCCGA+TGG | + | chr2_1:13688205-13688224 | None:intergenic | 50.0% | |
| TCCCAAGTAGGTAACACGGT+TGG | + | chr2_1:13688760-13688779 | None:intergenic | 50.0% | |
| GGAGTCCCAAGTAGGTAACA+CGG | + | chr2_1:13688764-13688783 | None:intergenic | 50.0% | |
| AAGGTGAAGGAGTCCCAAGT+AGG | + | chr2_1:13688772-13688791 | None:intergenic | 50.0% | |
| ACACGTGCAATAGAGAGGGA+GGG | + | chr2_1:13688978-13688997 | None:intergenic | 50.0% | |
| AGGTGAGTGAGATGTACACG+AGG | - | chr2_1:13689195-13689214 | Msa0196500:intron | 50.0% | |
| TGAGTGAGATGTACACGAGG+TGG | - | chr2_1:13689198-13689217 | Msa0196500:intron | 50.0% | |
| TACACGAGGTGGATGACTGT+GGG | - | chr2_1:13689209-13689228 | Msa0196500:intron | 50.0% | |
| AAACAGAGATGTGTGGGGTG+GGG | + | chr2_1:13689568-13689587 | None:intergenic | 50.0% | |
| GAAAACAGAGATGTGTGGGG+TGG | + | chr2_1:13689570-13689589 | None:intergenic | 50.0% | |
| TCGGTACTGCAAGCTTCTAG+AGG | - | chr2_1:13689735-13689754 | Msa0196500:intron | 50.0% | |
| CTAGAGGAGAACTCGTTCAG+GGG | - | chr2_1:13689751-13689770 | Msa0196500:intron | 50.0% | |
| ! | TTTGGGGCCACTGTATTGAC+TGG | - | chr2_1:13689805-13689824 | Msa0196500:intron | 50.0% |
| GACTGGAATCGTTCTCCTTG+GGG | - | chr2_1:13689822-13689841 | Msa0196500:intron | 50.0% | |
| ACTGGAATCGTTCTCCTTGG+GGG | - | chr2_1:13689823-13689842 | Msa0196500:intron | 50.0% | |
| TTGGGGTTCTCTGTCCTTGT+TGG | - | chr2_1:13690226-13690245 | Msa0196500:CDS | 50.0% | |
| CAGTAGATCTACCCAAGCAC+TGG | + | chr2_1:13690254-13690273 | None:intergenic | 50.0% | |
| CAGTGCTTGGGTAGATCTAC+TGG | - | chr2_1:13690252-13690271 | Msa0196500:intron | 50.0% | |
| GATGTCTATCCTCGGATGAC+TGG | - | chr2_1:13690407-13690426 | Msa0196500:intron | 50.0% | |
| ! | ATGACCCAGTTGTTGTTGCC+CGG | - | chr2_1:13690477-13690496 | Msa0196500:intron | 50.0% |
| CGGGGCAGCAAATCTAACAT+TGG | + | chr2_1:13690507-13690526 | None:intergenic | 50.0% | |
| !! | TGGTGGAGTTCTTCAGGTTG+CGG | + | chr2_1:13690527-13690546 | None:intergenic | 50.0% |
| CATTGGATGAAAGACTGCCC+TGG | - | chr2_1:13690790-13690809 | Msa0196500:five_prime_UTR | 50.0% | |
| GCTGCTGTTGTCACCACCAT+CGG | - | chr2_1:13688186-13688205 | Msa0196500:three_prime_UTR | 55.0% | |
| CTCAAGGGAACATCCGATGG+TGG | + | chr2_1:13688202-13688221 | None:intergenic | 55.0% | |
| CACCATCGGATGTTCCCTTG+AGG | - | chr2_1:13688200-13688219 | Msa0196500:three_prime_UTR | 55.0% | |
| GAGAGGGAGGGAGAAATGCT+AGG | + | chr2_1:13688966-13688985 | None:intergenic | 55.0% | |
| CACACGTGCAATAGAGAGGG+AGG | + | chr2_1:13688979-13688998 | None:intergenic | 55.0% | |
| GGAGCAACAGAAGTGAGGAG+TGG | - | chr2_1:13689162-13689181 | Msa0196500:intron | 55.0% | |
| GTACACGAGGTGGATGACTG+TGG | - | chr2_1:13689208-13689227 | Msa0196500:intron | 55.0% | |
| TCACTGCTGCCTACCTTCCA+TGG | - | chr2_1:13690061-13690080 | Msa0196500:intron | 55.0% | |
| CACTGCTGCCTACCTTCCAT+GGG | - | chr2_1:13690062-13690081 | Msa0196500:intron | 55.0% | |
| CTTACGCACCCATGGAAGGT+AGG | + | chr2_1:13690073-13690092 | None:intergenic | 55.0% | |
| GTAGCTTACGCACCCATGGA+AGG | + | chr2_1:13690077-13690096 | None:intergenic | 55.0% | |
| CTGTGTAGCTTACGCACCCA+TGG | + | chr2_1:13690081-13690100 | None:intergenic | 55.0% | |
| !! | TCCTTGTTGGTGCCAGTGCT+TGG | - | chr2_1:13690239-13690258 | Msa0196500:CDS | 55.0% |
| !! | CCTTGTTGGTGCCAGTGCTT+GGG | - | chr2_1:13690240-13690259 | Msa0196500:CDS | 55.0% |
| CATGGCCAGCAATCATTCCC+TGG | + | chr2_1:13690370-13690389 | None:intergenic | 55.0% | |
| !! | GTGGAGTTCTTCAGGTTGCG+GGG | + | chr2_1:13690525-13690544 | None:intergenic | 55.0% |
| !! | GGTGGAGTTCTTCAGGTTGC+GGG | + | chr2_1:13690526-13690545 | None:intergenic | 55.0% |
| AGAGATGTGTGGGGTGGGGT+GGG | + | chr2_1:13689564-13689583 | None:intergenic | 60.0% | |
| !! | CCCAAGCACTGGCACCAACA+AGG | + | chr2_1:13690243-13690262 | None:intergenic | 60.0% |
| CAGGCCGGGCAACAACAACT+GGG | + | chr2_1:13690484-13690503 | None:intergenic | 60.0% | |
| GAGATGTGTGGGGTGGGGTG+GGG | + | chr2_1:13689563-13689582 | None:intergenic | 65.0% | |
| CAGAGATGTGTGGGGTGGGG+TGG | + | chr2_1:13689565-13689584 | None:intergenic | 65.0% | |
| GCAGGCCGGGCAACAACAAC+TGG | + | chr2_1:13690485-13690504 | None:intergenic | 65.0% | |
| TGTGTGGGGTGGGGTGGGGT+GGG | + | chr2_1:13689559-13689578 | None:intergenic | 70.0% | |
| ATGTGTGGGGTGGGGTGGGG+TGG | + | chr2_1:13689560-13689579 | None:intergenic | 70.0% | |
| GGGCGACGACCAGTCATCCG+AGG | + | chr2_1:13690419-13690438 | None:intergenic | 70.0% | |
| GTGGGGTGGGGTGGGGAGGA+GGG | + | chr2_1:13689546-13689565 | None:intergenic | 75.0% | |
| GTGTGGGGTGGGGTGGGGTG+GGG | + | chr2_1:13689558-13689577 | None:intergenic | 75.0% | |
| ! | GGTGGGGTGGGGTGGGGAGG+AGG | + | chr2_1:13689547-13689566 | None:intergenic | 80.0% |
| ! | TGGGGTGGGGTGGGGTGGGG+AGG | + | chr2_1:13689550-13689569 | None:intergenic | 80.0% |
| ! | GGGTGGGGTGGGGTGGGGTG+GGG | + | chr2_1:13689553-13689572 | None:intergenic | 80.0% |
| ! | GGGGTGGGGTGGGGTGGGGT+GGG | + | chr2_1:13689554-13689573 | None:intergenic | 80.0% |
| ! | TGGGGTGGGGTGGGGTGGGG+TGG | + | chr2_1:13689550-13689569 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 13687900 | 13690893 | 13687900 | ID=Msa0196500;Name=Msa0196500 |
| chr2_1 | mRNA | 13687900 | 13690893 | 13687900 | ID=Msa0196500-mRNA-1;Parent=Msa0196500;Name=Msa0196500-mRNA-1;_AED=0.05;_eAED=0.05;_QI=223|1|1|1|1|1|6|340|244 |
| chr2_1 | exon | 13687900 | 13688422 | 13687900 | ID=Msa0196500-mRNA-1:exon:5962;Parent=Msa0196500-mRNA-1 |
| chr2_1 | exon | 13688520 | 13688573 | 13688520 | ID=Msa0196500-mRNA-1:exon:5961;Parent=Msa0196500-mRNA-1 |
| chr2_1 | exon | 13688710 | 13688793 | 13688710 | ID=Msa0196500-mRNA-1:exon:5960;Parent=Msa0196500-mRNA-1 |
| chr2_1 | exon | 13688878 | 13689092 | 13688878 | ID=Msa0196500-mRNA-1:exon:5959;Parent=Msa0196500-mRNA-1 |
| chr2_1 | exon | 13690163 | 13690262 | 13690163 | ID=Msa0196500-mRNA-1:exon:5958;Parent=Msa0196500-mRNA-1 |
| chr2_1 | exon | 13690572 | 13690893 | 13690572 | ID=Msa0196500-mRNA-1:exon:5957;Parent=Msa0196500-mRNA-1 |
| chr2_1 | five_prime_UTR | 13690671 | 13690893 | 13690671 | ID=Msa0196500-mRNA-1:five_prime_utr;Parent=Msa0196500-mRNA-1 |
| chr2_1 | CDS | 13690572 | 13690670 | 13690572 | ID=Msa0196500-mRNA-1:cds;Parent=Msa0196500-mRNA-1 |
| chr2_1 | CDS | 13690163 | 13690262 | 13690163 | ID=Msa0196500-mRNA-1:cds;Parent=Msa0196500-mRNA-1 |
| chr2_1 | CDS | 13688878 | 13689092 | 13688878 | ID=Msa0196500-mRNA-1:cds;Parent=Msa0196500-mRNA-1 |
| chr2_1 | CDS | 13688710 | 13688793 | 13688710 | ID=Msa0196500-mRNA-1:cds;Parent=Msa0196500-mRNA-1 |
| chr2_1 | CDS | 13688520 | 13688573 | 13688520 | ID=Msa0196500-mRNA-1:cds;Parent=Msa0196500-mRNA-1 |
| chr2_1 | CDS | 13688240 | 13688422 | 13688240 | ID=Msa0196500-mRNA-1:cds;Parent=Msa0196500-mRNA-1 |
| chr2_1 | three_prime_UTR | 13687900 | 13688239 | 13687900 | ID=Msa0196500-mRNA-1:three_prime_utr;Parent=Msa0196500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
