AlfalfaGEDB | Msa1104370

M. sativa cultivar zhongmu-4 / Msa1104370

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016787 GO:0016788 GO:0019219 GO:0019222 GO:0019538 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:0099402 GO:0140096 GO:0140110 GO:1901360 GO:1901363 GO:1901564 GO:1903506 GO:2000112 GO:2001141
PFAM: PF13041.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104370	XP_013448586.2	48.081	495	197	11	225	679	68	542	6.95e-135	419
Msa1104370	XP_013448586.2	77.547	530	25	5	1	436	41	570	0.0	795

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104370	sp\|Q56X05\|PPR15_ARATH	48.859	526	173	8	1	434	51	572	8.80e-159	473
Msa1104370	sp\|Q56X05\|PPR15_ARATH	36.250	480	260	8	225	673	76	540	1.36e-92	301

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104370	A0A396GXI8	48.081	495	197	11	225	679	68	542	3.32e-135	419
Msa1104370	A0A396GXI8	77.547	530	25	5	1	436	41	570	0.0	795

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003720	Msa1104370	0.806166	9.386720e-50	-8.615850e-47
Msa0003890	Msa1104370	0.824726	6.905123e-54	-8.615850e-47
Msa0011960	Msa1104370	0.804833	1.786832e-49	-8.615850e-47
Msa0012080	Msa1104370	0.837591	4.749159e-57	-8.615850e-47
Msa0014710	Msa1104370	0.807462	4.994557e-50	-8.615850e-47
Msa0016670	Msa1104370	0.819581	1.077550e-52	-8.615850e-47
Msa0017510	Msa1104370	0.852959	3.277571e-61	-8.615850e-47
Msa0021510	Msa1104370	0.811203	7.872030e-51	-8.615850e-47
Msa0022310	Msa1104370	0.801300	9.608951e-49	-8.615850e-47
Msa0025330	Msa1104370	0.807304	5.396636e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104370	MtrunA17_Chr7g0235501	77.547	530	25	5	1	436	41	570	0.0	795
Msa1104370	MtrunA17_Chr7g0235501	48.081	495	197	11	225	679	68	542	6.39e-139	419
Msa1104370	MtrunA17_Chr8g0366221	36.364	451	230	8	40	435	142	590	2.81e-90	293
Msa1104370	MtrunA17_Chr8g0366221	30.845	509	263	13	231	670	66	554	9.00e-66	228
Msa1104370	MtrunA17_Chr3g0139361	33.400	503	224	9	3	419	64	541	4.01e-85	278
Msa1104370	MtrunA17_Chr3g0139361	28.601	486	264	11	225	674	87	525	5.34e-59	208
Msa1104370	MtrunA17_Chr5g0404391	32.755	461	244	9	13	410	46	503	1.11e-81	268
Msa1104370	MtrunA17_Chr5g0404391	27.135	527	275	13	146	671	75	493	5.59e-54	193
Msa1104370	MtrunA17_Chr1g0205461	25.309	727	391	18	33	673	2	662	2.04e-81	274
Msa1104370	MtrunA17_Chr1g0205461	28.355	462	261	10	20	434	256	694	8.22e-63	223

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1104370	AT1G06143.1	48.859	526	173	8	1	434	51	572	8.94e-160	473
Msa1104370	AT1G06143.1	36.250	480	260	8	225	673	76	540	1.38e-93	301
Msa1104370	AT3G29230.1	32.836	469	244	8	3	424	145	589	6.60e-89	290
Msa1104370	AT3G29230.1	29.236	537	315	10	152	676	87	570	1.47e-67	233
Msa1104370	AT4G02750.1	36.520	408	211	7	72	434	289	693	1.52e-86	288
Msa1104370	AT4G02750.1	29.927	685	366	22	33	671	43	659	1.43e-81	275
Msa1104370	AT5G66520.1	33.868	499	263	10	1	435	37	532	5.11e-85	280
Msa1104370	AT5G66520.1	26.742	531	325	12	154	671	18	497	3.38e-52	191
Msa1104370	AT1G13410.1	34.703	438	217	8	31	422	47	461	1.71e-84	274
Msa1104370	AT1G13410.1	40.553	217	125	2	462	678	231	443	4.21e-51	184

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Find 164 sgRNAs with CRISPR-Local

Find 533 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACTGCCACGTGGAATG+CGG	0.624362	7_3:-41657949	Msa1104370:CDS
AAAGAGTCACGCAAAAGACG+AGG	0.596647	7_3:-41655258	Msa1104370:CDS
AAATGGAGAGGGACGGAATA+AGG	0.310078	7_3:-41650134	Msa1104370:CDS
AAATGGAGAGGGACGGAATA+AGG	0.310078	7_3:-41657470	Msa1104370:CDS
AACAATCAGATTCTGAACTG+CGG	0.686015	7_3:+41649837	None:intergenic
AACCTTACACCCATTCAACA+AGG	0.652252	7_3:+41649885	None:intergenic
AACCTTACACCCATTCAACA+AGG	0.652252	7_3:+41657221	None:intergenic
AAGAGTCACGCAAAAGACGA+GGG	0.678318	7_3:-41655257	Msa1104370:CDS
AAGATGAAGCGGTAATAAAT+TGG	0.352822	7_3:+41658429	None:intergenic
AAGTGAACCTGACCAGAAGA+TGG	0.517591	7_3:+41656961	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATGAAGCGGTAATAAAT+TGG	+	chr7_3:41649692-41649711	None:intergenic	30.0%
AGAAGATAATGAAGATGAAG+CGG	+	chr7_3:41649703-41649722	None:intergenic	30.0%
CTGTTAACAGATTCTGTTAA+CGG	-	chr7_3:41649915-41649934	Msa1104370:CDS	30.0%
GTTTAAAGAAATTCCTTCCA+AGG	-	chr7_3:41650241-41650260	Msa1104370:CDS	30.0%
TTTCATGAAATGGTGAATGA+GGG	-	chr7_3:41650335-41650354	Msa1104370:intron	30.0%
TGTTGGAATTCAATGATTGA+TGG	-	chr7_3:41650578-41650597	Msa1104370:intron	30.0%
CTAACAAATGTGACTCTATT+TGG	+	chr7_3:41650674-41650693	None:intergenic	30.0%
TTTGTTTGTGAGTATGATTG+AGG	-	chr7_3:41650742-41650761	Msa1104370:intron	30.0%
TTTGAAGATGATTAGAGGAA+TGG	-	chr7_3:41650844-41650863	Msa1104370:intron	30.0%
CTTCAGCATACATATTAACA+AGG	+	chr7_3:41651003-41651022	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	41649648	41658492	41649648	ID=Msa1104370;Name=Msa1104370
chr7_3	mRNA	41649648	41658492	41649648	ID=Msa1104370-mRNA-1;Parent=Msa1104370;Name=Msa1104370-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0\|0\|0\|1\|0\|0\|8\|0\|679
chr7_3	exon	41658261	41658492	41658261	ID=Msa1104370-mRNA-1:exon:8488;Parent=Msa1104370-mRNA-1
chr7_3	exon	41657911	41658113	41657911	ID=Msa1104370-mRNA-1:exon:8487;Parent=Msa1104370-mRNA-1
chr7_3	exon	41657633	41657877	41657633	ID=Msa1104370-mRNA-1:exon:8486;Parent=Msa1104370-mRNA-1
chr7_3	exon	41657420	41657605	41657420	ID=Msa1104370-mRNA-1:exon:8485;Parent=Msa1104370-mRNA-1
chr7_3	exon	41657129	41657362	41657129	ID=Msa1104370-mRNA-1:exon:8484;Parent=Msa1104370-mRNA-1
chr7_3	exon	41656904	41657110	41656904	ID=Msa1104370-mRNA-1:exon:8483;Parent=Msa1104370-mRNA-1
chr7_3	exon	41655190	41655291	41655190	ID=Msa1104370-mRNA-1:exon:8482;Parent=Msa1104370-mRNA-1
chr7_3	exon	41649648	41650278	41649648	ID=Msa1104370-mRNA-1:exon:8481;Parent=Msa1104370-mRNA-1
chr7_3	CDS	41658261	41658492	41658261	ID=Msa1104370-mRNA-1:cds;Parent=Msa1104370-mRNA-1
chr7_3	CDS	41657911	41658113	41657911	ID=Msa1104370-mRNA-1:cds;Parent=Msa1104370-mRNA-1
chr7_3	CDS	41657633	41657877	41657633	ID=Msa1104370-mRNA-1:cds;Parent=Msa1104370-mRNA-1
chr7_3	CDS	41657420	41657605	41657420	ID=Msa1104370-mRNA-1:cds;Parent=Msa1104370-mRNA-1
chr7_3	CDS	41657129	41657362	41657129	ID=Msa1104370-mRNA-1:cds;Parent=Msa1104370-mRNA-1
chr7_3	CDS	41656904	41657110	41656904	ID=Msa1104370-mRNA-1:cds;Parent=Msa1104370-mRNA-1
chr7_3	CDS	41655190	41655291	41655190	ID=Msa1104370-mRNA-1:cds;Parent=Msa1104370-mRNA-1
chr7_3	CDS	41649648	41650278	41649648	ID=Msa1104370-mRNA-1:cds;Parent=Msa1104370-mRNA-1

Gene Sequence

>Msa1104370

ATGTTCAAAACTAATTTCAACCAAGATTGTTTCCTTATGAACCAATTTATTACCGCTTCATCTTCATTATCTTCTTTTAACATAAACTTCGCAACTTCCACTTTCACACAAATCATTAAACCAAACACTCTCGTTTACAATGCACTCATTAAAGCCTGCGTTCATTCTCATTCATCAAACCAAGCATTACTACATTACATCCATATGCTCCGAAACGGTGTCATACCGTCGAGTTATGTGTGTGACGCGAGAAAGGTGTTTGATGAAATGTCTGAGAGAGATGTTTATGCTTGGACGACGATGATTTCAGCGTATGTGAGGAATAATGACGTGGAATCTGCGGCGAAACTGTTTGATGATATGCCTGAAGGAAAAAACACTGCCACGTGGAATGCGGTGATTGATGGGTATGCGAAATTGGGGAATGTTGAGCGTGATATAATTTCGTGGACAACTTTGATGAGTTGTTATTCGAAGAGCAAGAGATATGGTGAAGTGGTGAAGCTTTTTCATGAAATGGTGAATGAGGGAAGGGTGGTTCCTGATGAAGTTGCTATAACAACCGTGATTTCGGCTTGTGCTCATTTAGGTGCACTTGGGTTTGGAAAAGAGGTGCATTTTTATTTGATGGTGAATGGGTTTGGTATTGATGTTTATATTGGATCGTCATTGATCGACATGTCGCTTTTGGTGTTTTATAAATTGAAAGAGAAGAATCTTTTTTGTTGGAATTCAATGATTGATGGACTTGCTGCACATGGCTATGCGAATGAGGCGTTAAGGATGTTTGCGGAAATGGAGAGGGACGGAATAAGGCCAAATAGAGTCACATTTGTTAGTGTTTTAACTGCTTGTACTCATGCGGGTCCTCAAGTTGAACATTATGGATGCATGGTTGATTTATTGAGCAAAGGTGGTTTGCTTGAGGATGCTTTGAAGATGATTAGAGGAATGGAGTTTGAGCCGAACAGTTTCATTTGGGGGGCCTTGTTGAATGGGTGTAAGGTTCATAGAAACTTGGAAGTTGCTCGTGTCGCAGTTCGGAATCTGATGGTTCTGGAGCCAAATAATAGCGGGCATTATAGTCTCCTTGTTAATATGTGGAGTGACGTTGCGAAGATCCGGACTGAGATGAAGGATTTGGGTGTGGAGAAGAGATGTCCGGGTTCTAGCTGGATTGAAATCAACAAGGAAATTCATGTTTTTGCGGCTTCTGATAAATATCACCCATCTTCTGGTCAGGTTCACTTGTTGCTTGTTGAACTGGATGAACAGCTGAGGCTAGCTGGCTTTGTACCTGAAATGGGCATGAGCGGAGAAAGAGTCACGCAAAAGACGAGGGCATCTTGTGAGCAGAGAAAAGCGAGGCAAAGATTTGGGAACTTGGATATAGAGAAGAAACTAGCTAGTGTAGAAAGGTCGCTTTTGGTGTTTTATAAATTGCAAGAGAAGAATTTGTTTTGTTGGAATTCAATGATTGATGGACTTGCTGCACATGGCTATGCGAATGAGGCGTTAAGGATGTTTGCGGAAATGGAGAGGGACGGAATAAGGCCAAATAGAGTCACGTTTGTTAGTGGTTTAACTGCTTGTACTCATGCAGGGTTTATACAAGAGGGTCGTCGTTTGTTTGTGAGTATGATAGAGGATTATTGTATTAGTCCTCAAGTTGAACACTATGGATGCATGGTTGATTTATTGAGCAAAGGTGGTTTGCTTGAGGATGCTTTGGAGATGATTAGAGGAATGGAGTTTGAGCCGAACAGTTTCATTTGGGGGGCCTTGTTGAATGGGTGTAAGGTTCATAGAAACTTAGAAATTGCTTGTGCCGCAGTTCAGAATCTGATTGTTCTGAAGCCAAGTAACAACGGGCATTATAGTCTCCTTGTTAATATGTATGCTGAAGTGAATAGGTGGAGTGACGTTGCGAAGATCCGGACTGAGATGCAGGATTTGGGTGTGGAGAAGAGATGTCCGGGCTCTAGCTGGATTGAAATCAACAAGGAAATTCATCTTCTGGTCAGGTTCACTTCCTGTTAG

Protein sequence

>Msa1104370

MFKTNFNQDCFLMNQFITASSSLSSFNINFATSTFTQIIKPNTLVYNALIKACVHSHSSNQALLHYIHMLRNGVIPSSYVCDARKVFDEMSERDVYAWTTMISAYVRNNDVESAAKLFDDMPEGKNTATWNAVIDGYAKLGNVERDIISWTTLMSCYSKSKRYGEVVKLFHEMVNEGRVVPDEVAITTVISACAHLGALGFGKEVHFYLMVNGFGIDVYIGSSLIDMSLLVFYKLKEKNLFCWNSMIDGLAAHGYANEALRMFAEMERDGIRPNRVTFVSVLTACTHAGPQVEHYGCMVDLLSKGGLLEDALKMIRGMEFEPNSFIWGALLNGCKVHRNLEVARVAVRNLMVLEPNNSGHYSLLVNMWSDVAKIRTEMKDLGVEKRCPGSSWIEINKEIHVFAASDKYHPSSGQVHLLLVELDEQLRLAGFVPEMGMSGERVTQKTRASCEQRKARQRFGNLDIEKKLASVERSLLVFYKLQEKNLFCWNSMIDGLAAHGYANEALRMFAEMERDGIRPNRVTFVSGLTACTHAGFIQEGRRLFVSMIEDYCISPQVEHYGCMVDLLSKGGLLEDALEMIRGMEFEPNSFIWGALLNGCKVHRNLEIACAAVQNLIVLKPSNNGHYSLLVNMYAEVNRWSDVAKIRTEMQDLGVEKRCPGSSWIEINKEIHLLVRFTSC*