AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0002420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002420 MtrunA17_Chr4g0056061 98.885 538 6 0 1 538 1 538 0.0 1112
Msa0002420 MtrunA17_Chr5g0399311 83.299 479 76 1 22 496 34 512 0.0 852
Msa0002420 MtrunA17_Chr3g0143821 62.470 413 153 2 79 490 82 493 0.0 548
Msa0002420 MtrunA17_Chr5g0448581 57.206 451 178 4 68 506 68 515 0.0 538
Msa0002420 MtrunA17_Chr1g0160781 44.192 396 187 9 74 444 115 501 3.10e-107 331
Msa0002420 MtrunA17_Chr4g0043911 38.664 494 271 14 28 496 68 554 7.22e-103 320
Msa0002420 MtrunA17_Chr3g0077321 41.355 428 230 9 81 491 123 546 3.57e-101 316
Msa0002420 MtrunA17_Chr5g0417871 42.222 405 211 8 104 491 81 479 2.34e-98 306
Msa0002420 MtrunA17_Chr5g0426591 42.711 391 213 6 78 464 84 467 3.34e-97 305
Msa0002420 MtrunA17_Chr4g0042711 41.606 411 217 8 104 497 93 497 3.70e-97 304
Msa0002420 MtrunA17_Chr4g0008451 41.531 431 228 11 76 491 202 623 5.65e-97 307
Msa0002420 MtrunA17_Chr5g0436321 42.092 411 216 12 97 492 150 553 4.58e-95 300
Msa0002420 MtrunA17_Chr3g0132371 45.652 368 189 7 108 468 141 504 8.44e-95 299
Msa0002420 MtrunA17_Chr6g0455571 44.032 377 203 6 101 470 108 483 1.53e-93 295
Msa0002420 MtrunA17_Chr3g0123521 39.492 433 235 11 80 489 119 547 5.03e-92 292
Msa0002420 MtrunA17_Chr5g0424241 44.382 356 174 7 109 444 158 509 8.29e-92 292
Msa0002420 MtrunA17_Chr2g0284071 36.364 462 239 14 80 491 186 642 2.45e-91 293
Msa0002420 MtrunA17_Chr4g0061781 41.076 409 229 7 101 498 109 516 4.90e-91 288
Msa0002420 MtrunA17_Chr4g0070551 38.876 427 237 11 79 490 201 618 8.29e-91 291
Msa0002420 MtrunA17_Chr3g0129981 44.675 338 179 4 111 444 117 450 1.50e-90 287
Msa0002420 MtrunA17_Chr2g0307971 42.400 375 208 6 101 468 108 481 2.18e-89 284
Msa0002420 MtrunA17_Chr1g0204121 38.756 418 247 6 79 490 61 475 4.80e-87 278
Msa0002420 MtrunA17_Chr5g0412251 36.222 450 242 14 79 490 60 502 1.49e-80 260
Msa0002420 MtrunA17_Chr4g0075311 36.199 442 226 11 73 464 131 566 1.36e-79 260
Msa0002420 MtrunA17_Chr1g0204141 37.678 422 249 8 79 490 61 478 3.55e-79 257
Msa0002420 MtrunA17_Chr3g0087291 38.760 387 223 8 111 489 176 556 7.92e-77 252
Msa0002420 MtrunA17_Chr3g0132951 35.681 426 233 12 101 489 94 515 1.86e-75 248
Msa0002420 MtrunA17_Chr4g0010511 39.848 394 209 10 111 489 236 616 1.42e-72 243
Msa0002420 MtrunA17_Chr4g0003561 31.250 368 221 9 78 433 46 393 1.09e-50 179
Msa0002420 MtrunA17_Chr7g0220381 34.868 304 172 9 97 380 88 385 2.92e-45 169
Msa0002420 MtrunA17_Chr1g0146501 29.650 371 232 9 40 383 12 380 3.21e-42 160
Msa0002420 MtrunA17_Chr3g0127811 32.404 287 174 6 108 383 63 340 4.01e-40 151
Msa0002420 MtrunA17_Chr2g0298881 26.879 346 207 12 101 436 28 337 7.74e-27 112
Msa0002420 MtrunA17_Chr7g0240241 44.643 112 56 1 274 379 8 119 3.53e-24 98.2
Msa0002420 MtrunA17_Chr4g0002361 27.729 339 199 12 108 435 86 389 5.65e-24 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002420 AT4G16650.2 77.004 474 106 1 20 493 37 507 0.0 762
Msa0002420 AT4G16650.1 77.004 474 106 1 20 493 37 507 0.0 762
Msa0002420 AT1G76270.1 56.455 457 194 3 79 534 77 529 0.0 543
Msa0002420 AT1G20550.1 54.088 477 206 5 25 490 16 490 0.0 539
Msa0002420 AT4G38390.1 60.827 411 160 1 80 489 95 505 0.0 537
Msa0002420 AT1G14970.3 44.089 406 201 10 107 491 8 408 2.23e-108 330
Msa0002420 AT1G14970.2 44.089 406 201 10 107 491 34 434 5.13e-108 330
Msa0002420 AT2G01480.2 47.875 353 168 7 108 444 154 506 1.09e-106 330
Msa0002420 AT1G14970.1 44.089 406 201 10 107 491 154 554 2.63e-106 330
Msa0002420 AT2G01480.1 47.875 353 168 7 108 444 154 506 6.21e-106 329
Msa0002420 AT1G14020.1 42.356 399 217 6 104 490 87 484 4.57e-99 309
Msa0002420 AT1G35510.1 42.469 405 209 8 108 492 159 559 4.27e-98 308
Msa0002420 AT2G03280.1 42.462 398 215 7 104 488 84 480 5.07e-97 303
Msa0002420 AT5G64600.1 41.935 403 208 9 108 489 117 514 1.61e-96 303
Msa0002420 AT2G37980.1 38.990 495 258 17 35 497 141 623 1.16e-95 304
Msa0002420 AT1G22460.1 42.822 404 207 11 108 491 160 559 1.16e-95 302
Msa0002420 AT5G15740.1 43.501 377 205 6 101 470 99 474 4.40e-95 299
Msa0002420 AT3G54100.1 40.323 434 235 11 79 497 195 619 5.13e-94 300
Msa0002420 AT1G38065.2 43.514 370 190 8 108 460 26 393 1.86e-93 293
Msa0002420 AT1G38065.1 43.514 370 190 8 108 460 36 403 2.51e-93 293
Msa0002420 AT3G02250.1 43.236 377 206 6 101 470 99 474 2.89e-92 291
Msa0002420 AT1G38131.1 43.514 370 190 8 108 460 155 522 6.38e-92 293
Msa0002420 AT3G26370.1 40.441 408 215 10 105 490 155 556 9.54e-92 291
Msa0002420 AT2G03280.2 39.765 425 215 8 104 488 84 507 3.08e-91 289
Msa0002420 AT1G04910.1 41.860 387 217 5 79 460 61 444 1.58e-90 287
Msa0002420 AT5G35570.1 40.610 426 229 10 80 490 225 641 3.29e-90 290
Msa0002420 AT1G62330.1 38.614 404 199 9 109 464 222 624 2.35e-86 280
Msa0002420 AT1G11990.1 38.875 409 219 9 79 464 163 563 4.74e-84 272
Msa0002420 AT2G44500.1 40.674 386 218 6 111 489 180 561 3.34e-83 270
Msa0002420 AT5G01100.1 36.131 429 248 10 79 490 190 609 5.34e-82 268
Msa0002420 AT4G24530.1 36.345 476 257 16 55 490 48 517 6.15e-81 262
Msa0002420 AT1G29200.4 37.678 422 218 9 83 460 44 464 1.81e-79 258
Msa0002420 AT1G29200.1 37.678 422 218 9 83 460 44 464 1.81e-79 258
Msa0002420 AT1G29200.2 37.678 422 218 9 83 460 160 580 1.76e-78 258
Msa0002420 AT1G11990.2 35.650 446 219 10 79 464 148 585 1.78e-77 256
Msa0002420 AT1G29200.3 38.363 391 197 8 113 460 1 390 3.68e-76 247
Msa0002420 AT5G65470.1 34.956 452 245 14 79 489 59 502 7.95e-76 248
Msa0002420 AT3G07900.1 37.613 444 254 13 63 491 139 574 1.67e-75 249
Msa0002420 AT5G63390.1 37.824 386 229 7 111 489 167 548 9.41e-74 244
Msa0002420 AT1G52630.1 30.130 385 233 9 72 443 39 400 6.29e-50 178
Msa0002420 AT3G26370.2 41.395 215 114 4 105 309 155 367 1.00e-47 171
Msa0002420 AT3G30300.2 35.974 303 172 9 95 380 90 387 6.59e-47 174
Msa0002420 AT3G30300.1 35.974 303 172 9 95 380 90 387 6.59e-47 174
Msa0002420 AT2G44500.2 41.667 228 126 3 111 334 180 404 6.50e-45 164
Msa0002420 AT1G52630.2 30.120 332 199 7 124 443 2 312 7.06e-44 159
Msa0002420 AT3G03810.2 32.075 371 226 10 38 383 10 379 1.93e-43 164
Msa0002420 AT3G03810.1 32.075 371 226 10 38 383 10 379 1.93e-43 164
Msa0002420 AT3G21190.1 26.471 340 201 12 108 435 90 392 1.76e-23 103
Msa0002420 AT1G51630.1 24.706 340 207 11 108 435 91 393 1.10e-20 95.1

Find 184 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATGCGCCAATTGATATT+TGG 0.125119 1_1:-4315184 Msa0002420:CDS
ATGAACAAGAATGGGGATTT+TGG 0.208572 1_1:+4316115 None:intergenic
TGTATGTAACAGGCGATATA+TGG 0.223337 1_1:-4311659 Msa0002420:intron
TCACTCAATTCGTCTATAAA+TGG 0.225919 1_1:+4311445 None:intergenic
CGACTTCACCACACCCATTT+GGG 0.243600 1_1:+4315951 None:intergenic
GCTTAATATGTTCTCTCATT+TGG 0.246182 1_1:+4311322 None:intergenic
CCTGAAAATGCCAGCATATC+TGG 0.250790 1_1:+4312570 None:intergenic
CTTCTTTGCATTTGGTCTAA+TGG 0.257972 1_1:+4311624 None:intergenic
CTCGGGACACGCATGGTATA+TGG 0.258841 1_1:+4313327 None:intergenic
TAATTGGTTCATTAATTATC+TGG 0.271850 1_1:-4313412 Msa0002420:CDS
TTCATTTCCTCCGTTTATTT+CGG 0.275809 1_1:+4311366 None:intergenic
ATTAGATTTGGTTTGTTATT+CGG 0.295544 1_1:-4316379 Msa0002420:five_prime_UTR
TCAATTTAGATCCATGTATA+GGG 0.299524 1_1:-4311208 Msa0002420:three_prime_UTR
CTCAAGTCTTTAGAAGAAAA+AGG 0.303898 1_1:+4316060 None:intergenic
TACTTACCCCAGTTCTTTGT+TGG 0.313373 1_1:+4314316 None:intergenic
ATTGACCGCATGACCTTATC+TGG 0.317222 1_1:+4313360 None:intergenic
GCGCTAAGCTTCTTTGCATT+TGG 0.317689 1_1:+4311616 None:intergenic
CCACGCTTTCGTTCTCCGTC+AGG 0.330147 1_1:+4312052 None:intergenic
CGGCAAAGCAACTCAGTTAC+TGG 0.333215 1_1:-4310879 Msa0002420:three_prime_UTR
ATCTCCTTTGTATAGATGTT+GGG 0.341513 1_1:+4311893 None:intergenic
ATCGTCACCTGAATTAGATT+TGG 0.353653 1_1:-4316391 Msa0002420:five_prime_UTR
TCATGCGCCAATTGATATTT+GGG 0.356114 1_1:-4315183 Msa0002420:CDS
ACGACTTCACCACACCCATT+TGG 0.356500 1_1:+4315950 None:intergenic
GCTCTCCCATGAATCCTCTT+TGG 0.363004 1_1:+4311533 None:intergenic
TATGTTCTCTCATTTGGCTT+TGG 0.365917 1_1:+4311328 None:intergenic
TAACAAACCAAATCTAATTC+AGG 0.371361 1_1:+4316384 None:intergenic
TCGGGACACGCATGGTATAT+GGG 0.373647 1_1:+4313328 None:intergenic
AGCTTGGTGAAATCAGAAAA+AGG 0.385190 1_1:-4312512 Msa0002420:CDS
GAAGCTTAGCGCGCTGTTCA+TGG 0.386331 1_1:-4311605 Msa0002420:CDS
CCTTTCTCGAAAATGTATTC+CGG 0.393462 1_1:+4311566 None:intergenic
GGACTGAACCAACAAAGAAC+TGG 0.397018 1_1:-4314324 Msa0002420:CDS
CTCAATTTAGATCCATGTAT+AGG 0.397167 1_1:-4311209 Msa0002420:three_prime_UTR
TGGACGATTAGAGCTGGTTT+AGG 0.404354 1_1:-4310762 Msa0002420:three_prime_UTR
CTAAAACCCCATTGGAGAAT+GGG 0.407953 1_1:+4316018 None:intergenic
TTCACTGAACACACCTCAAA+TGG 0.408067 1_1:+4312897 None:intergenic
ATTGTGTTATGAACAAGAAT+GGG 0.409285 1_1:+4316107 None:intergenic
ACTTGATCAAGATAATATTC+AGG 0.409288 1_1:+4313294 None:intergenic
TATTGCACTTACTTTAGAAT+AGG 0.412673 1_1:+4316202 None:intergenic
TGAAATGAAGGTATGATAAG+TGG 0.412997 1_1:+4316251 None:intergenic
GGCGTGCCAAAGAGGATTCA+TGG 0.413721 1_1:-4311539 Msa0002420:CDS
TTTGGTCCCTTTCAAGTTGG+TGG 0.420304 1_1:-4311280 Msa0002420:three_prime_UTR
TGTGATTCCCAAATATCAAT+TGG 0.422550 1_1:+4315176 None:intergenic
GGAACTGACGCCGAAATAAA+CGG 0.425295 1_1:-4311376 Msa0002420:CDS
GAGAATTGCAAGAGCAACTT+TGG 0.426387 1_1:-4311298 Msa0002420:three_prime_UTR
TAGTTCATCATCAAGGTCAT+TGG 0.428900 1_1:+4313036 None:intergenic
CCCACTTCATGAGGAGTAAG+AGG 0.434476 1_1:+4312022 None:intergenic
GTTCATGGCGAGGCATGAAA+TGG 0.434734 1_1:-4311590 Msa0002420:CDS
TGATTTCATTCATTGCCAAT+TGG 0.435248 1_1:-4316352 Msa0002420:five_prime_UTR
AGAGGATTCATGGGAGAGCC+AGG 0.436961 1_1:-4311529 Msa0002420:CDS
GAAAATGAAACAAGACCAAT+TGG 0.438044 1_1:+4316337 None:intergenic
CATCTCCTTTGTATAGATGT+TGG 0.438548 1_1:+4311892 None:intergenic
AATTGTGTTATGAACAAGAA+TGG 0.439173 1_1:+4316106 None:intergenic
GTTATATAGCAGTCCATTTG+AGG 0.440662 1_1:-4312910 Msa0002420:intron
CACGCTTTCGTTCTCCGTCA+GGG 0.449075 1_1:+4312053 None:intergenic
ACATACCTGTATGTTGCATC+GGG 0.449719 1_1:-4311965 Msa0002420:CDS
AATAATGCCACCAACTTGAA+AGG 0.450326 1_1:+4311273 None:intergenic
CGTCCAGCTTTCATCTCTCC+TGG 0.453678 1_1:+4311511 None:intergenic
TTCATTGTGAGCTCAGCTAT+AGG 0.454563 1_1:-4311124 Msa0002420:intron
AACATGGCCAGGATTCTTGC+TGG 0.456728 1_1:-4311761 Msa0002420:CDS
TCTAAAACCCCATTGGAGAA+TGG 0.456883 1_1:+4316017 None:intergenic
CACATACCTGTATGTTGCAT+CGG 0.462028 1_1:-4311966 Msa0002420:CDS
GCATTTAGAAATCTGACAAT+AGG 0.464250 1_1:-4311397 Msa0002420:CDS
GAAATGAAGGTATGATAAGT+GGG 0.465770 1_1:+4316252 None:intergenic
ACGTTGTTTCTCATCTTGAA+TGG 0.468318 1_1:-4315801 Msa0002420:CDS
CAGGTTTGAGCCAGATATGC+TGG 0.469168 1_1:-4312580 Msa0002420:CDS
TATTCAGGATCTGATTTCCT+CGG 0.470623 1_1:+4313309 None:intergenic
AGATTTCTAAATGCGAGCTT+AGG 0.471285 1_1:+4311406 None:intergenic
ATACGCGAGCGCATGTCAAA+TGG 0.471651 1_1:-4314372 Msa0002420:CDS
AGATAAGGTCATGCGGTCAA+TGG 0.476341 1_1:-4313358 Msa0002420:CDS
TATAAATAATAATGAAATGA+AGG 0.476717 1_1:+4316239 None:intergenic
CCTTTGACCAGCAAGAATCC+TGG 0.479961 1_1:+4311754 None:intergenic
GTTGGTGGCATTATTAAACT+TGG 0.480356 1_1:-4311265 Msa0002420:three_prime_UTR
ACAATGCCCCATTCTCCAAT+GGG 0.481367 1_1:-4316025 Msa0002420:five_prime_UTR
CTACTACGGATGCAAAGAAA+GGG 0.482045 1_1:-4315141 Msa0002420:CDS
TTCTTCAAGTGCAACGATGA+TGG 0.486237 1_1:-4310914 Msa0002420:three_prime_UTR
TTCTCACAGACACAAGTGCT+TGG 0.492215 1_1:+4311469 None:intergenic
GTAATCAACAGCAGCTAGGC+GGG 0.492518 1_1:+4311829 None:intergenic
CGGGACACGCATGGTATATG+GGG 0.492983 1_1:+4313329 None:intergenic
TTCAAAATCTAAAACCCCAT+TGG 0.495443 1_1:+4316010 None:intergenic
ACTACTACGGATGCAAAGAA+AGG 0.497464 1_1:-4315142 Msa0002420:CDS
CACTTACTTTAGAATAGGAT+CGG 0.498801 1_1:+4316207 None:intergenic
ATTCAGGATCTGATTTCCTC+GGG 0.501133 1_1:+4313310 None:intergenic
AAAAGGTTTCAATTCTTCCT+CGG 0.501153 1_1:+4311865 None:intergenic
AATTGAGTGAAGATGGAATC+CGG 0.501267 1_1:-4311432 Msa0002420:CDS
ATAATGCCACCAACTTGAAA+GGG 0.502180 1_1:+4311274 None:intergenic
TGTAATGAGGATGCGAAAGA+TGG 0.508686 1_1:-4312939 Msa0002420:CDS
AACTTTGGTCCCTTTCAAGT+TGG 0.509880 1_1:-4311283 Msa0002420:three_prime_UTR
TTGTTATGGCTTGAACGGAT+TGG 0.510891 1_1:-4310827 Msa0002420:three_prime_UTR
GTATGTAACAGGCGATATAT+GGG 0.511833 1_1:-4311658 Msa0002420:intron
ATAGACGAATTGAGTGAAGA+TGG 0.512145 1_1:-4311439 Msa0002420:CDS
TAAATGCGAGCTTAGGTGGC+CGG 0.513190 1_1:+4311413 None:intergenic
ATTCCATGGTCGGTCATTTG+CGG 0.516284 1_1:-4315868 Msa0002420:CDS
GAGCCAGGAGAGATGAAAGC+TGG 0.520156 1_1:-4311514 Msa0002420:CDS
ACCCGTCGTCTCAAGAGTAT+TGG 0.523710 1_1:+4313267 None:intergenic
ACAACAACGGTAACATGGCC+AGG 0.529185 1_1:-4311772 Msa0002420:CDS
CGGGAAGAGAATGAAAGAAA+AGG 0.531327 1_1:+4311848 None:intergenic
GCTTATATCAATCTCGGCAA+TGG 0.532044 1_1:-4310782 Msa0002420:three_prime_UTR
TACAATGCCCCATTCTCCAA+TGG 0.533480 1_1:-4316026 Msa0002420:five_prime_UTR
TGTTAAAAGAGTTCCAGATA+AGG 0.534714 1_1:-4313373 Msa0002420:CDS
ACAAAACCAATACGACAACT+TGG 0.536194 1_1:-4312971 Msa0002420:CDS
TTGCTTATTGCCGCGAGCGG+AGG 0.537115 1_1:-4314345 Msa0002420:CDS
GGTTTGATGCTGCGAGCGCT+TGG 0.537934 1_1:-4312001 Msa0002420:CDS
CCAATTAACATCGAAAATGT+TGG 0.538007 1_1:+4313428 None:intergenic
TCCTCTTACTCCTCATGAAG+TGG 0.539526 1_1:-4312023 Msa0002420:CDS
CCTCTTACTCCTCATGAAGT+GGG 0.541378 1_1:-4312022 Msa0002420:CDS
TTTCTAAATGCGAGCTTAGG+TGG 0.543183 1_1:+4311409 None:intergenic
TTCGAGATCCATTCCATGGT+CGG 0.545811 1_1:-4315878 Msa0002420:CDS
GACTGAACCAACAAAGAACT+GGG 0.546290 1_1:-4314323 Msa0002420:CDS
GCCAATACTCTTGAGACGAC+GGG 0.549625 1_1:-4313268 Msa0002420:intron
CCAGGATTCTTGCTGGTCAA+AGG 0.549818 1_1:-4311754 Msa0002420:intron
ATGTGGGCTTATATCAATCT+CGG 0.550508 1_1:-4310788 Msa0002420:three_prime_UTR
TTGGTTCAGTCCTCCGCTCG+CGG 0.550953 1_1:+4314335 None:intergenic
GCACTTGGTTTGAGTCATGT+TGG 0.551582 1_1:+4310972 None:intergenic
CATATCTATAAACATTTGCA+AGG 0.551643 1_1:+4311160 None:intergenic
TCAAATGGACTGCTATATAA+CGG 0.554034 1_1:+4312912 None:intergenic
GCAAATGACCGACCATGGAA+TGG 0.559030 1_1:+4315870 None:intergenic
TACGTACTTTCCCCTATACA+TGG 0.559264 1_1:+4311197 None:intergenic
TGGCGAGGCATGAAATGGAC+CGG 0.559422 1_1:-4311585 Msa0002420:CDS
CGGCAATGGACGATTAGAGC+TGG 0.559423 1_1:-4310768 Msa0002420:three_prime_UTR
GATGATGGTCTCTATTTCAT+CGG 0.560662 1_1:-4310899 Msa0002420:three_prime_UTR
GTTAGAGTGAGTGTGGTTCG+TGG 0.562414 1_1:+4315918 None:intergenic
TCTCCTTTGTATAGATGTTG+GGG 0.562630 1_1:+4311894 None:intergenic
GAGCTCCAGCTTGCTGTAGG+TGG 0.563803 1_1:+4310943 None:intergenic
AAACCGCAAATGACCGACCA+TGG 0.565822 1_1:+4315865 None:intergenic
CAATATTCTAAATACTACTA+CGG 0.567932 1_1:-4315155 Msa0002420:CDS
TGTAGGTGGTATAATGCACT+TGG 0.570011 1_1:+4310957 None:intergenic
GCGTGCCAAAGAGGATTCAT+GGG 0.571444 1_1:-4311538 Msa0002420:CDS
CTGATGCTGTTGTTGTTGCA+CGG 0.572212 1_1:-4313663 Msa0002420:CDS
AATCTTGTTATATGCTGTGA+TGG 0.573882 1_1:-4311232 Msa0002420:three_prime_UTR
CCGCAGTTTCTTCTCTACAC+TGG 0.574458 1_1:-4315758 Msa0002420:intron
CAATGTAATCAACAGCAGCT+AGG 0.577338 1_1:+4311825 None:intergenic
AAGATCTCTGAGAGGCTGCA+TGG 0.577808 1_1:+4311919 None:intergenic
TTAGCGCGCTGTTCATGGCG+AGG 0.577856 1_1:-4311600 Msa0002420:CDS
TGCTAACAACAACGGTAACA+TGG 0.579524 1_1:-4311777 Msa0002420:CDS
GCGTCACATGAGGCTACATG+TGG 0.581233 1_1:-4310805 Msa0002420:three_prime_UTR
TGGAATGGATCTCGAACAGA+TGG 0.584319 1_1:+4315885 None:intergenic
TACTTGCTTATTGCCGCGAG+CGG 0.584367 1_1:-4314348 Msa0002420:CDS
GAAGAGCTCCAGCTTGCTGT+AGG 0.585222 1_1:+4310940 None:intergenic
GAACGGATTGGCGTCACATG+AGG 0.585749 1_1:-4310815 Msa0002420:three_prime_UTR
TTTGTGACAAAACCCCAAAT+GGG 0.586008 1_1:-4315964 Msa0002420:exon
AAGATGAGAAACAACGTGAC+CGG 0.587152 1_1:+4315807 None:intergenic
TTGTGTTATGAACAAGAATG+GGG 0.587821 1_1:+4316108 None:intergenic
GGAGAGATGAAAGCTGGACG+AGG 0.589299 1_1:-4311508 Msa0002420:CDS
TTATACCACCTACAGCAAGC+TGG 0.590274 1_1:-4310948 Msa0002420:three_prime_UTR
TGCCAATACTCTTGAGACGA+CGG 0.593501 1_1:-4313269 Msa0002420:CDS
TCTGTTCGAGATCCATTCCA+TGG 0.594173 1_1:-4315882 Msa0002420:CDS
AGCATCAAACCCACTTCATG+AGG 0.596281 1_1:+4312013 None:intergenic
TAAAACCCCATTGGAGAATG+GGG 0.597995 1_1:+4316019 None:intergenic
AAGCCATAACAAAACGACCT+TGG 0.599910 1_1:+4310838 None:intergenic
CAGAGAACTATGAATACGAA+AGG 0.603495 1_1:+4316315 None:intergenic
TGATTTCCTCGGGACACGCA+TGG 0.609508 1_1:+4313320 None:intergenic
ATACAGGATTTGAGCCCTGA+CGG 0.612438 1_1:-4312067 Msa0002420:intron
GACTTCACCACACCCATTTG+GGG 0.613598 1_1:+4315952 None:intergenic
AAATGAAGGTATGATAAGTG+GGG 0.614612 1_1:+4316253 None:intergenic
CACACTTGTTGTACCTGAGT+TGG 0.618209 1_1:-4313629 Msa0002420:CDS
ATACCTGTATGTTGCATCGG+GGG 0.619931 1_1:-4311963 Msa0002420:CDS
AAAGAATTATGATCCAACTC+AGG 0.620218 1_1:+4313616 None:intergenic
AAGGTAAAGGCGTGCCAAAG+AGG 0.620555 1_1:-4311547 Msa0002420:CDS
TTTCCCCAACATCTATACAA+AGG 0.622108 1_1:-4311897 Msa0002420:CDS
CAATTTAGATCCATGTATAG+GGG 0.626244 1_1:-4311207 Msa0002420:three_prime_UTR
CCTGACGGAGAACGAAAGCG+TGG 0.628749 1_1:-4312052 Msa0002420:CDS
GAGAATGGGGCATTGTAGTG+TGG 0.634336 1_1:+4316032 None:intergenic
GTATTTGTTGCTAACAACAA+CGG 0.634873 1_1:-4311785 Msa0002420:CDS
GACAAAACCCCAAATGGGTG+TGG 0.644598 1_1:-4315959 Msa0002420:exon
AAATGGGTGTGGTGAAGTCG+TGG 0.645174 1_1:-4315948 Msa0002420:CDS
TACAAAGGAGATGCTTGCCG+AGG 0.652331 1_1:-4311882 Msa0002420:CDS
CATATACCATGCGTGTCCCG+AGG 0.654449 1_1:-4313326 Msa0002420:CDS
TGTAATCAACAGCAGCTAGG+CGG 0.658178 1_1:+4311828 None:intergenic
ATATCTATAAACATTTGCAA+GGG 0.665419 1_1:+4311161 None:intergenic
AATGAAGGTATGATAAGTGG+GGG 0.670531 1_1:+4316254 None:intergenic
CGTCACATGAGGCTACATGT+GGG 0.672293 1_1:-4310804 Msa0002420:three_prime_UTR
CAACTCAGGTACAACAAGTG+TGG 0.676378 1_1:+4313630 None:intergenic
TACTACGGATGCAAAGAAAG+GGG 0.685798 1_1:-4315140 Msa0002420:CDS
TCAAAGCATGATAATTAACA+CGG 0.686663 1_1:+4312999 None:intergenic
CTGACGGAGAACGAAAGCGT+GGG 0.689450 1_1:-4312051 Msa0002420:CDS
GAGTTCCAGATAAGGTCATG+CGG 0.704682 1_1:-4313365 Msa0002420:CDS
CAATGCCCCATTCTCCAATG+GGG 0.710397 1_1:-4316024 Msa0002420:five_prime_UTR
GGGACACGCATGGTATATGG+GGG 0.711401 1_1:+4313330 None:intergenic
CATACCTGTATGTTGCATCG+GGG 0.711632 1_1:-4311964 Msa0002420:CDS
TTGGGGAAAAGATCTCTGAG+AGG 0.727453 1_1:+4311911 None:intergenic
ACTGACGCCGAAATAAACGG+AGG 0.750065 1_1:-4311373 Msa0002420:CDS
CCAGTGTAGAGAAGAAACTG+CGG 0.760750 1_1:+4315758 None:intergenic
ACTGAACCAACAAAGAACTG+GGG 0.763615 1_1:-4314322 Msa0002420:intron
ATGTGTGTACGAGATGACCA+AGG 0.776685 1_1:-4310855 Msa0002420:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAATAATAATGAAATGA+AGG + chr1_1:4310879-4310898 None:intergenic 10.0%
!! TAACATAATAATGAATAAAA+GGG + chr1_1:4311396-4311415 None:intergenic 10.0%
!! TATATATAACATAATTAGAA+AGG + chr1_1:4312517-4312536 None:intergenic 10.0%
!! AAATAAAACAAAGTATAAAA+TGG + chr1_1:4312629-4312648 None:intergenic 10.0%
!!! TTGTGTAAAAATATAATTTT+AGG - chr1_1:4314789-4314808 Msa0002420:intron 10.0%
!!! TTATATTAATTTTTCAAACA+AGG + chr1_1:4315402-4315421 None:intergenic 10.0%
!!! ATATAAATTTTGTTTGATAA+AGG - chr1_1:4315416-4315435 Msa0002420:intron 10.0%
!! GTAACATAATAATGAATAAA+AGG + chr1_1:4311397-4311416 None:intergenic 15.0%
!! CAATCAATATATAATTAGAA+AGG + chr1_1:4312485-4312504 None:intergenic 15.0%
!! AATATTAACAAATTGTCTAT+GGG + chr1_1:4312653-4312672 None:intergenic 15.0%
!!! ATAGACAATTTGTTAATATT+GGG - chr1_1:4312653-4312672 Msa0002420:intron 15.0%
!! GAAATAACATTACTTTAATT+TGG + chr1_1:4313396-4313415 None:intergenic 15.0%
!!! TTAAAGTAATGTTATTTCTA+TGG - chr1_1:4313398-4313417 Msa0002420:CDS 15.0%
!!! AATTTGCATATTGTTTTATA+CGG - chr1_1:4313539-4313558 Msa0002420:intron 15.0%
!! AGTTATAATGTATTACAAAA+AGG + chr1_1:4313624-4313643 None:intergenic 15.0%
!!! AAAAATATAATTTTAGGTGT+TGG - chr1_1:4314795-4314814 Msa0002420:intron 15.0%
!!! ATTAGATTTGGTTTGTTATT+CGG - chr1_1:4310736-4310755 Msa0002420:three_prime_UTR 20.0%
!!! TGTAATTGATGTGAATTTTT+TGG - chr1_1:4311895-4311914 Msa0002420:CDS 20.0%
!! CAATATTCTAAATACTACTA+CGG - chr1_1:4311960-4311979 Msa0002420:CDS 20.0%
!!! AATGAAAATGACTCAAATTT+TGG + chr1_1:4312119-4312138 None:intergenic 20.0%
!! CAATATTAACAAATTGTCTA+TGG + chr1_1:4312654-4312673 None:intergenic 20.0%
!!! CATAGACAATTTGTTAATAT+TGG - chr1_1:4312652-4312671 Msa0002420:intron 20.0%
!! ATGGATAAGTTTAATGTATA+TGG - chr1_1:4312890-4312909 Msa0002420:intron 20.0%
!! TATCAAATTATTATCGATGT+CGG + chr1_1:4313150-4313169 None:intergenic 20.0%
!! GATAAAATCACATAATTCAA+TGG - chr1_1:4313166-4313185 Msa0002420:intron 20.0%
!!! TAATTGGTTCATTAATTATC+TGG - chr1_1:4313703-4313722 Msa0002420:intron 20.0%
!! AAATTTAAATTCCATACACA+AGG + chr1_1:4314244-4314263 None:intergenic 20.0%
!!! TTAAATTTAACTTCCATCAA+AGG - chr1_1:4314256-4314275 Msa0002420:intron 20.0%
!! CATTATAATAGCAATATGTA+AGG - chr1_1:4314466-4314485 Msa0002420:intron 20.0%
!!! AGTAGTTTTTCAAAATAATC+TGG - chr1_1:4314901-4314920 Msa0002420:intron 20.0%
!!! ATATAACAAGATTTTCATCA+TGG + chr1_1:4315876-4315895 None:intergenic 20.0%
!! ATATCTATAAACATTTGCAA+GGG + chr1_1:4315957-4315976 None:intergenic 20.0%
! TAACAAACCAAATCTAATTC+AGG + chr1_1:4310734-4310753 None:intergenic 25.0%
!!! TATTGCACTTACTTTAGAAT+AGG + chr1_1:4310916-4310935 None:intergenic 25.0%
! ATTGTGTTATGAACAAGAAT+GGG + chr1_1:4311011-4311030 None:intergenic 25.0%
! AATTGTGTTATGAACAAGAA+TGG + chr1_1:4311012-4311031 None:intergenic 25.0%
! GAAAAAGGAATCTTGATTTA+GGG + chr1_1:4311043-4311062 None:intergenic 25.0%
! AGAAAAAGGAATCTTGATTT+AGG + chr1_1:4311044-4311063 None:intergenic 25.0%
!! ATTGATGAAGATTTTGTGTT+TGG - chr1_1:4311127-4311146 Msa0002420:three_prime_UTR 25.0%
! CATATAAGTGCTTATGTATA+AGG - chr1_1:4311480-4311499 Msa0002420:CDS 25.0%
! CATCAATTACACAACATATT+TGG + chr1_1:4311886-4311905 None:intergenic 25.0%
!!! ATTGATGTGAATTTTTTGGT+AGG - chr1_1:4311899-4311918 Msa0002420:CDS 25.0%
!! TTGTGTTTGCTAACTAAAAA+TGG - chr1_1:4312038-4312057 Msa0002420:CDS 25.0%
! AAAATCATACATACATGTCA+AGG + chr1_1:4312066-4312085 None:intergenic 25.0%
!! ATCAGTCTAAAATTACCATT+AGG + chr1_1:4312210-4312229 None:intergenic 25.0%
!!! GTAATTTTAGACTGATTTCA+AGG - chr1_1:4312214-4312233 Msa0002420:intron 25.0%
! AATAATATCTTCACTGCTTT+AGG - chr1_1:4312306-4312325 Msa0002420:intron 25.0%
! TATATATATTGCTTCAAAGC+CGG - chr1_1:4312531-4312550 Msa0002420:CDS 25.0%
! TTCTATCTCATTATGGTAAT+TGG - chr1_1:4312706-4312725 Msa0002420:intron 25.0%
! GATAAGTTTAATGTATATGG+AGG - chr1_1:4312893-4312912 Msa0002420:intron 25.0%
!! TTTTCTTGATTTCAATCAGT+AGG + chr1_1:4312936-4312955 None:intergenic 25.0%
!! TACTGATTGAAATCAAGAAA+AGG - chr1_1:4312935-4312954 Msa0002420:CDS 25.0%
! TCTTCAAAAACAACTGAAAA+AGG + chr1_1:4312993-4313012 None:intergenic 25.0%
! TGTCTTAATTAGATTACACT+AGG + chr1_1:4313336-4313355 None:intergenic 25.0%
!! AGTTGGATCATAATTCTTTT+TGG - chr1_1:4313503-4313522 Msa0002420:intron 25.0%
! ACTTGATCAAGATAATATTC+AGG + chr1_1:4313824-4313843 None:intergenic 25.0%
! TCAAAGCATGATAATTAACA+CGG + chr1_1:4314119-4314138 None:intergenic 25.0%
! TTGGTCAAAAAATTGTAATG+AGG - chr1_1:4314163-4314182 Msa0002420:intron 25.0%
! TCATGATCTATGATGATTTA+TGG - chr1_1:4314510-4314529 Msa0002420:intron 25.0%
!!! GGTAAAGAAATAACTAGTTT+TGG + chr1_1:4314993-4315012 None:intergenic 25.0%
! TCAATTTAGATCCATGTATA+GGG - chr1_1:4315907-4315926 Msa0002420:CDS 25.0%
! CATATCTATAAACATTTGCA+AGG + chr1_1:4315958-4315977 None:intergenic 25.0%
! TATTTAGTATTTAAGTCGTC+AGG + chr1_1:4316080-4316099 None:intergenic 25.0%
! GACGACTTAAATACTAAATA+TGG - chr1_1:4316080-4316099 Msa0002420:five_prime_UTR 25.0%
TGATTTCATTCATTGCCAAT+TGG - chr1_1:4310763-4310782 Msa0002420:three_prime_UTR 30.0%
GAAAATGAAACAAGACCAAT+TGG + chr1_1:4310781-4310800 None:intergenic 30.0%
! AAATGAAGGTATGATAAGTG+GGG + chr1_1:4310865-4310884 None:intergenic 30.0%
! GAAATGAAGGTATGATAAGT+GGG + chr1_1:4310866-4310885 None:intergenic 30.0%
! TGAAATGAAGGTATGATAAG+TGG + chr1_1:4310867-4310886 None:intergenic 30.0%
!! CACTTACTTTAGAATAGGAT+CGG + chr1_1:4310911-4310930 None:intergenic 30.0%
!! ATGGGGATTTTGGTATTTTT+TGG + chr1_1:4310993-4311012 None:intergenic 30.0%
TTGTGTTATGAACAAGAATG+GGG + chr1_1:4311010-4311029 None:intergenic 30.0%
! CTCAAGTCTTTAGAAGAAAA+AGG + chr1_1:4311058-4311077 None:intergenic 30.0%
! TTCAAAATCTAAAACCCCAT+TGG + chr1_1:4311108-4311127 None:intergenic 30.0%
! AACATAATGGCTTAAGGTTT+TGG - chr1_1:4311748-4311767 Msa0002420:intron 30.0%
! ACATAATGGCTTAAGGTTTT+GGG - chr1_1:4311749-4311768 Msa0002420:intron 30.0%
!!! ATGTGAATTTTTTGGTAGGA+TGG - chr1_1:4311903-4311922 Msa0002420:CDS 30.0%
TGTGATTCCCAAATATCAAT+TGG + chr1_1:4311942-4311961 None:intergenic 30.0%
!! ATGAAGCTTTATTTGCCTAA+TGG - chr1_1:4312192-4312211 Msa0002420:intron 30.0%
TTAGGATAGATTACATCAGT+AGG - chr1_1:4312324-4312343 Msa0002420:intron 30.0%
TGAGTTTAGATCATGTTAAG+GGG + chr1_1:4312422-4312441 None:intergenic 30.0%
CTGAGTTTAGATCATGTTAA+GGG + chr1_1:4312423-4312442 None:intergenic 30.0%
ACTGAGTTTAGATCATGTTA+AGG + chr1_1:4312424-4312443 None:intergenic 30.0%
TTAACATGATCTAAACTCAG+TGG - chr1_1:4312423-4312442 Msa0002420:intron 30.0%
! ATTTTCTCATAGCAGTGTAA+TGG + chr1_1:4312597-4312616 None:intergenic 30.0%
!! TGTCACTTTCTATCTCATTA+TGG - chr1_1:4312699-4312718 Msa0002420:intron 30.0%
AAAGAATTATGATCCAACTC+AGG + chr1_1:4313502-4313521 None:intergenic 30.0%
! GGATCATAATTCTTTTTGGA+AGG - chr1_1:4313507-4313526 Msa0002420:intron 30.0%
GAAGTCACTGTATTACAAAA+AGG + chr1_1:4313666-4313685 None:intergenic 30.0%
CCAATTAACATCGAAAATGT+TGG + chr1_1:4313690-4313709 None:intergenic 30.0%
! CCAACATTTTCGATGTTAAT+TGG - chr1_1:4313687-4313706 Msa0002420:intron 30.0%
TGTTAAAAGAGTTCCAGATA+AGG - chr1_1:4313742-4313761 Msa0002420:intron 30.0%
!! TCAGTTTTGATAACTCCTTT+TGG - chr1_1:4313981-4314000 Msa0002420:intron 30.0%
!! CAGATTTTTCGGTATTTTAC+AGG - chr1_1:4314023-4314042 Msa0002420:intron 30.0%
! GTTTTTGTAGTTCATCATCA+AGG + chr1_1:4314089-4314108 None:intergenic 30.0%
!! TCAAATGGACTGCTATATAA+CGG + chr1_1:4314206-4314225 None:intergenic 30.0%
TATAGGGATGAGATCATATA+TGG + chr1_1:4314334-4314353 None:intergenic 30.0%
GATAAAGGAGTTGTGAAAAT+GGG + chr1_1:4314386-4314405 None:intergenic 30.0%
TGATAAAGGAGTTGTGAAAA+TGG + chr1_1:4314387-4314406 None:intergenic 30.0%
TCAATTTCAGACAGTGATAA+AGG + chr1_1:4314401-4314420 None:intergenic 30.0%
GATCATGAGAATTCAAACAT+TGG + chr1_1:4314498-4314517 None:intergenic 30.0%
!!! GCATTTTCAGGTTGTTATTT+TGG - chr1_1:4314557-4314576 Msa0002420:intron 30.0%
!!! TTTTCAGGTTGTTATTTTGG+TGG - chr1_1:4314560-4314579 Msa0002420:intron 30.0%
!!! TTTCAGGTTGTTATTTTGGT+GGG - chr1_1:4314561-4314580 Msa0002420:intron 30.0%
! GTTTTGTCAGTAGAAATCAT+AGG + chr1_1:4314657-4314676 None:intergenic 30.0%
TATTGTCAGTGGAAATGATA+TGG + chr1_1:4314679-4314698 None:intergenic 30.0%
TGTATTATTGCAAGAGGTAA+TGG + chr1_1:4315033-4315052 None:intergenic 30.0%
ATTACCTCTTGCAATAATAC+AGG - chr1_1:4315032-4315051 Msa0002420:intron 30.0%
AAATCCTGTATTATTGCAAG+AGG + chr1_1:4315039-4315058 None:intergenic 30.0%
ATCTCCTTTGTATAGATGTT+GGG + chr1_1:4315225-4315244 None:intergenic 30.0%
AAAAGGTTTCAATTCTTCCT+CGG + chr1_1:4315253-4315272 None:intergenic 30.0%
! GTATTTGTTGCTAACAACAA+CGG - chr1_1:4315330-4315349 Msa0002420:intron 30.0%
GATTTCTTCTTGTATGTAAC+AGG - chr1_1:4315446-4315465 Msa0002420:intron 30.0%
!! TACATTTTCGAGAAAGGTAA+AGG - chr1_1:4315555-4315574 Msa0002420:intron 30.0%
TCACTCAATTCGTCTATAAA+TGG + chr1_1:4315673-4315692 None:intergenic 30.0%
TTCATTTCCTCCGTTTATTT+CGG + chr1_1:4315752-4315771 None:intergenic 30.0%
GCTTAATATGTTCTCTCATT+TGG + chr1_1:4315796-4315815 None:intergenic 30.0%
! AATCTTGTTATATGCTGTGA+TGG - chr1_1:4315883-4315902 Msa0002420:CDS 30.0%
CTCAATTTAGATCCATGTAT+AGG - chr1_1:4315906-4315925 Msa0002420:CDS 30.0%
CAATTTAGATCCATGTATAG+GGG - chr1_1:4315908-4315927 Msa0002420:CDS 30.0%
CAGAGAACTATGAATACGAA+AGG + chr1_1:4310803-4310822 None:intergenic 35.0%
! AATGAAGGTATGATAAGTGG+GGG + chr1_1:4310864-4310883 None:intergenic 35.0%
! ATGAACAAGAATGGGGATTT+TGG + chr1_1:4311003-4311022 None:intergenic 35.0%
! TTTTGTGACAAAACCCCAAA+TGG - chr1_1:4311150-4311169 Msa0002420:three_prime_UTR 35.0%
TTTGTGACAAAACCCCAAAT+GGG - chr1_1:4311151-4311170 Msa0002420:three_prime_UTR 35.0%
! ATTTGCGGTTTCATGCTTTT+CGG - chr1_1:4311262-4311281 Msa0002420:three_prime_UTR 35.0%
! GGTCTCATTTCTCTTTTAAC+CGG - chr1_1:4311289-4311308 Msa0002420:three_prime_UTR 35.0%
!! ACGTTGTTTCTCATCTTGAA+TGG - chr1_1:4311314-4311333 Msa0002420:exon 35.0%
!! TGCTTTTTGTATTGCCAATG+TGG - chr1_1:4311428-4311447 Msa0002420:CDS 35.0%
ATTCCTATTGTAGACCACAT+TGG + chr1_1:4311445-4311464 None:intergenic 35.0%
CTTATTTCCATAAGTGCTAC+AGG + chr1_1:4311565-4311584 None:intergenic 35.0%
GAGAAGACTCACAAACATAA+TGG - chr1_1:4311735-4311754 Msa0002420:intron 35.0%
CTCACAAACATAATGGCTTA+AGG - chr1_1:4311742-4311761 Msa0002420:intron 35.0%
!!! TAAGGTTTTGGGTAAAGATG+TGG - chr1_1:4311760-4311779 Msa0002420:CDS 35.0%
TGGTGTACAATTCACTTGTA+TGG - chr1_1:4311780-4311799 Msa0002420:CDS 35.0%
ATTCACTTGTATGGTTGCTT+TGG - chr1_1:4311789-4311808 Msa0002420:CDS 35.0%
! TTCACTTGTATGGTTGCTTT+GGG - chr1_1:4311790-4311809 Msa0002420:CDS 35.0%
AAACTTATCTACTGACGACT+GGG + chr1_1:4311851-4311870 None:intergenic 35.0%
TAAACTTATCTACTGACGAC+TGG + chr1_1:4311852-4311871 None:intergenic 35.0%
ATCATGCGCCAATTGATATT+TGG - chr1_1:4311931-4311950 Msa0002420:CDS 35.0%
TCATGCGCCAATTGATATTT+GGG - chr1_1:4311932-4311951 Msa0002420:CDS 35.0%
AAAAACAGCACATAGCAACA+TGG + chr1_1:4312254-4312273 None:intergenic 35.0%
!! GATTTTTAATTACACCGTCG+TGG - chr1_1:4312867-4312886 Msa0002420:intron 35.0%
TTAAACTTATCCATCCACGA+CGG + chr1_1:4312884-4312903 None:intergenic 35.0%
!!! AGTTGTTTTTGAAGAATGCG+AGG - chr1_1:4312998-4313017 Msa0002420:CDS 35.0%
!! CTAGTTCTATCGATATCATC+AGG + chr1_1:4313051-4313070 None:intergenic 35.0%
TGGAATCATATGTGTCATGT+CGG - chr1_1:4313186-4313205 Msa0002420:intron 35.0%
CACTAGGCTCTATTAACAAT+AGG + chr1_1:4313320-4313339 None:intergenic 35.0%
!! ATTCTTTTTGGAAGGATGAC+AGG - chr1_1:4313515-4313534 Msa0002420:intron 35.0%
TATTCAGGATCTGATTTCCT+CGG + chr1_1:4313809-4313828 None:intergenic 35.0%
!!! CTCCTTTTGGAATTCAATTG+TGG - chr1_1:4313994-4314013 Msa0002420:intron 35.0%
CACCACAATTGAATTCCAAA+AGG + chr1_1:4313999-4314018 None:intergenic 35.0%
!!! CTTTTGGAATTCAATTGTGG+TGG - chr1_1:4313997-4314016 Msa0002420:intron 35.0%
! TGTGGTGGTAACAGATTTTT+CGG - chr1_1:4314012-4314031 Msa0002420:intron 35.0%
TAGTTCATCATCAAGGTCAT+TGG + chr1_1:4314082-4314101 None:intergenic 35.0%
ACAAAACCAATACGACAACT+TGG - chr1_1:4314144-4314163 Msa0002420:intron 35.0%
! TTTTGACCAAGTTGTCGTAT+TGG + chr1_1:4314153-4314172 None:intergenic 35.0%
GTTATATAGCAGTCCATTTG+AGG - chr1_1:4314205-4314224 Msa0002420:intron 35.0%
TGGACAACATGTATGTCATA+AGG + chr1_1:4314314-4314333 None:intergenic 35.0%
! GATCTCATCCCTATATCTTT+TGG - chr1_1:4314339-4314358 Msa0002420:CDS 35.0%
CAGACACACCAAAAGATATA+GGG + chr1_1:4314350-4314369 None:intergenic 35.0%
TCTATGATGATTTATGGCAC+AGG - chr1_1:4314516-4314535 Msa0002420:intron 35.0%
!!! TTCAGGTTGTTATTTTGGTG+GGG - chr1_1:4314562-4314581 Msa0002420:intron 35.0%
GAAAAAGAAAGACAAGAGCT+TGG - chr1_1:4314587-4314606 Msa0002420:intron 35.0%
! AGCTTGGTGAAATCAGAAAA+AGG - chr1_1:4314603-4314622 Msa0002420:intron 35.0%
TTGGTGAAATCAGAAAAAGG+TGG - chr1_1:4314606-4314625 Msa0002420:intron 35.0%
! TCATAGGATTGTAGTCTTAC+AGG + chr1_1:4314641-4314660 None:intergenic 35.0%
AAAGGAGAAACTATTGTCAG+TGG + chr1_1:4314690-4314709 None:intergenic 35.0%
! TTTCTCCTTTTATCACCCAT+GGG - chr1_1:4314700-4314719 Msa0002420:intron 35.0%
AATAGATCCTTGAACAAGTC+AGG + chr1_1:4314734-4314753 None:intergenic 35.0%
!!! GGTGTTGGTTTTATAAGTAG+AGG - chr1_1:4314810-4314829 Msa0002420:intron 35.0%
ATGGCTCATTCACTTGATAT+TGG + chr1_1:4315014-4315033 None:intergenic 35.0%
TTTCCCCAACATCTATACAA+AGG - chr1_1:4315218-4315237 Msa0002420:intron 35.0%
TCTCCTTTGTATAGATGTTG+GGG + chr1_1:4315224-4315243 None:intergenic 35.0%
CATCTCCTTTGTATAGATGT+TGG + chr1_1:4315226-4315245 None:intergenic 35.0%
TGTATGTAACAGGCGATATA+TGG - chr1_1:4315456-4315475 Msa0002420:intron 35.0%
GTATGTAACAGGCGATATAT+GGG - chr1_1:4315457-4315476 Msa0002420:intron 35.0%
CTTCTTTGCATTTGGTCTAA+TGG + chr1_1:4315494-4315513 None:intergenic 35.0%
CCTTTCTCGAAAATGTATTC+CGG + chr1_1:4315552-4315571 None:intergenic 35.0%
ATAGACGAATTGAGTGAAGA+TGG - chr1_1:4315676-4315695 Msa0002420:intron 35.0%
AATTGAGTGAAGATGGAATC+CGG - chr1_1:4315683-4315702 Msa0002420:intron 35.0%
! TATGTTCTCTCATTTGGCTT+TGG + chr1_1:4315790-4315809 None:intergenic 35.0%
ATAATGCCACCAACTTGAAA+GGG + chr1_1:4315844-4315863 None:intergenic 35.0%
AATAATGCCACCAACTTGAA+AGG + chr1_1:4315845-4315864 None:intergenic 35.0%
!! GTTGGTGGCATTATTAAACT+TGG - chr1_1:4315850-4315869 Msa0002420:CDS 35.0%
! TGGGAGAATACTCAATTTTG+TGG + chr1_1:4316030-4316049 None:intergenic 35.0%
TCAGGTAATCCGTTACTAAA+CGG + chr1_1:4316062-4316081 None:intergenic 35.0%
! GATGATGGTCTCTATTTCAT+CGG - chr1_1:4316216-4316235 Msa0002420:five_prime_UTR 35.0%
!! TCGTTTTGTTATGGCTTGAA+CGG - chr1_1:4316283-4316302 Msa0002420:five_prime_UTR 35.0%
ATGTGGGCTTATATCAATCT+CGG - chr1_1:4316327-4316346 Msa0002420:five_prime_UTR 35.0%
TAAAACCCCATTGGAGAATG+GGG + chr1_1:4311099-4311118 None:intergenic 40.0%
CTAAAACCCCATTGGAGAAT+GGG + chr1_1:4311100-4311119 None:intergenic 40.0%
! TCTAAAACCCCATTGGAGAA+TGG + chr1_1:4311101-4311120 None:intergenic 40.0%
!!! TTTTGGTGTTAGAGTGAGTG+TGG + chr1_1:4311207-4311226 None:intergenic 40.0%
! TCTCGAACAGATGGCATTTT+TGG + chr1_1:4311224-4311243 None:intergenic 40.0%
! TTTGCGGTTTCATGCTTTTC+GGG - chr1_1:4311263-4311282 Msa0002420:three_prime_UTR 40.0%
AAGATGAGAAACAACGTGAC+CGG + chr1_1:4311311-4311330 None:intergenic 40.0%
TTGCCAATGTGGTCTACAAT+AGG - chr1_1:4311439-4311458 Msa0002420:CDS 40.0%
! GTGCTACAGGATAGCTTTTA+TGG + chr1_1:4311552-4311571 None:intergenic 40.0%
AAGCTATCCTGTAGCACTTA+TGG - chr1_1:4311555-4311574 Msa0002420:CDS 40.0%
CCTAGAGAATCATCCACATT+GGG + chr1_1:4311816-4311835 None:intergenic 40.0%
ACTACTACGGATGCAAAGAA+AGG - chr1_1:4311973-4311992 Msa0002420:CDS 40.0%
CTACTACGGATGCAAAGAAA+GGG - chr1_1:4311974-4311993 Msa0002420:CDS 40.0%
TACTACGGATGCAAAGAAAG+GGG - chr1_1:4311975-4311994 Msa0002420:CDS 40.0%
TAGCAACATGGAGACTTAGA+AGG + chr1_1:4312242-4312261 None:intergenic 40.0%
ACTAGAGACAGATGCAAATC+TGG - chr1_1:4312350-4312369 Msa0002420:intron 40.0%
GTTTAGATCATGTTAAGGGG+AGG + chr1_1:4312419-4312438 None:intergenic 40.0%
TAGTGTGACCTTGTTGAAAG+AGG - chr1_1:4312556-4312575 Msa0002420:CDS 40.0%
CATGAAAGCCTCTTTCAACA+AGG + chr1_1:4312567-4312586 None:intergenic 40.0%
CTTGTTGAAAGAGGCTTTCA+TGG - chr1_1:4312565-4312584 Msa0002420:CDS 40.0%
! TCATAGCAGTGTAATGGAAG+GGG + chr1_1:4312591-4312610 None:intergenic 40.0%
! CTCATAGCAGTGTAATGGAA+GGG + chr1_1:4312592-4312611 None:intergenic 40.0%
! TCTCATAGCAGTGTAATGGA+AGG + chr1_1:4312593-4312612 None:intergenic 40.0%
GACTGAACCAACAAAGAACT+GGG - chr1_1:4312792-4312811 Msa0002420:intron 40.0%
ACTGAACCAACAAAGAACTG+GGG - chr1_1:4312793-4312812 Msa0002420:intron 40.0%
TACTTACCCCAGTTCTTTGT+TGG + chr1_1:4312802-4312821 None:intergenic 40.0%
AACAAAGAACTGGGGTAAGT+AGG - chr1_1:4312801-4312820 Msa0002420:intron 40.0%
TTTAATTACACCGTCGTGGA+TGG - chr1_1:4312871-4312890 Msa0002420:intron 40.0%
AATGCGAGGCTAGATTGATT+AGG - chr1_1:4313012-4313031 Msa0002420:CDS 40.0%
! ATATGTGTCATGTCGGTGTT+GGG - chr1_1:4313193-4313212 Msa0002420:intron 40.0%
TATGAAGCAAGGACACTCTA+TGG + chr1_1:4313230-4313249 None:intergenic 40.0%
! ATAGAGTGTCCTTGCTTCAT+AGG - chr1_1:4313229-4313248 Msa0002420:intron 40.0%
ATTCAGGATCTGATTTCCTC+GGG + chr1_1:4313808-4313827 None:intergenic 40.0%
ACTAGGTGTTTCATCATGAC+AGG + chr1_1:4313949-4313968 None:intergenic 40.0%
ATGATGAAACACCTAGTAGC+TGG - chr1_1:4313952-4313971 Msa0002420:intron 40.0%
ACTGACATTAACCAGCTACT+AGG + chr1_1:4313966-4313985 None:intergenic 40.0%
TGTAATGAGGATGCGAAAGA+TGG - chr1_1:4314176-4314195 Msa0002420:intron 40.0%
TTCACTGAACACACCTCAAA+TGG + chr1_1:4314221-4314240 None:intergenic 40.0%
TGTTCAGTGAACCTTGTGTA+TGG - chr1_1:4314230-4314249 Msa0002420:intron 40.0%
AACTTCCATCAAAGGCAAAG+TGG - chr1_1:4314264-4314283 Msa0002420:intron 40.0%
CCAGACACACCAAAAGATAT+AGG + chr1_1:4314351-4314370 None:intergenic 40.0%
!! CCTATATCTTTTGGTGTGTC+TGG - chr1_1:4314348-4314367 Msa0002420:CDS 40.0%
!!! TCAGGTTGTTATTTTGGTGG+GGG - chr1_1:4314563-4314582 Msa0002420:intron 40.0%
! GTTTCTCCTTTTATCACCCA+TGG - chr1_1:4314699-4314718 Msa0002420:intron 40.0%
! TTCTCCTTTTATCACCCATG+GGG - chr1_1:4314701-4314720 Msa0002420:intron 40.0%
!! CAGTAATCCTGACTTGTTCA+AGG - chr1_1:4314724-4314743 Msa0002420:intron 40.0%
CACATACCTGTATGTTGCAT+CGG - chr1_1:4315149-4315168 Msa0002420:CDS 40.0%
ACATACCTGTATGTTGCATC+GGG - chr1_1:4315150-4315169 Msa0002420:CDS 40.0%
CGGGAAGAGAATGAAAGAAA+AGG + chr1_1:4315270-4315289 None:intergenic 40.0%
CAATGTAATCAACAGCAGCT+AGG + chr1_1:4315293-4315312 None:intergenic 40.0%
TGCTAACAACAACGGTAACA+TGG - chr1_1:4315338-4315357 Msa0002420:intron 40.0%
!! CCGGAATACATTTTCGAGAA+AGG - chr1_1:4315549-4315568 Msa0002420:intron 40.0%
GAGAATTGCAAGAGCAACTT+TGG - chr1_1:4315817-4315836 Msa0002420:CDS 40.0%
! AACTTTGGTCCCTTTCAAGT+TGG - chr1_1:4315832-4315851 Msa0002420:CDS 40.0%
TACGTACTTTCCCCTATACA+TGG + chr1_1:4315921-4315940 None:intergenic 40.0%
TTCATTGTGAGCTCAGCTAT+AGG - chr1_1:4315991-4316010 Msa0002420:five_prime_UTR 40.0%
TACTAAACGGGAAACAACGT+GGG + chr1_1:4316049-4316068 None:intergenic 40.0%
TTACTAAACGGGAAACAACG+TGG + chr1_1:4316050-4316069 None:intergenic 40.0%
! CGTTGTTTCCCGTTTAGTAA+CGG - chr1_1:4316050-4316069 Msa0002420:five_prime_UTR 40.0%
CAGGTAATCCGTTACTAAAC+GGG + chr1_1:4316061-4316080 None:intergenic 40.0%
TGTAGGTGGTATAATGCACT+TGG + chr1_1:4316161-4316180 None:intergenic 40.0%
TTCTTCAAGTGCAACGATGA+TGG - chr1_1:4316201-4316220 Msa0002420:five_prime_UTR 40.0%
!! TGACCAAGGTCGTTTTGTTA+TGG - chr1_1:4316274-4316293 Msa0002420:five_prime_UTR 40.0%
AAGCCATAACAAAACGACCT+TGG + chr1_1:4316280-4316299 None:intergenic 40.0%
TTGTTATGGCTTGAACGGAT+TGG - chr1_1:4316288-4316307 Msa0002420:five_prime_UTR 40.0%
GCTTATATCAATCTCGGCAA+TGG - chr1_1:4316333-4316352 Msa0002420:five_prime_UTR 40.0%
TGGGGGAAGAAACACAATGT+TGG + chr1_1:4310847-4310866 None:intergenic 45.0%
TACAATGCCCCATTCTCCAA+TGG - chr1_1:4311089-4311108 Msa0002420:intron 45.0%
ACAATGCCCCATTCTCCAAT+GGG - chr1_1:4311090-4311109 Msa0002420:intron 45.0%
TGGAATGGATCTCGAACAGA+TGG + chr1_1:4311233-4311252 None:intergenic 45.0%
TCTGTTCGAGATCCATTCCA+TGG - chr1_1:4311233-4311252 Msa0002420:three_prime_UTR 45.0%
TTCGAGATCCATTCCATGGT+CGG - chr1_1:4311237-4311256 Msa0002420:three_prime_UTR 45.0%
ATTCCATGGTCGGTCATTTG+CGG - chr1_1:4311247-4311266 Msa0002420:three_prime_UTR 45.0%
!!! GGTTTCATGCTTTTCGGGTT+GGG - chr1_1:4311268-4311287 Msa0002420:three_prime_UTR 45.0%
CCAGTGTAGAGAAGAAACTG+CGG + chr1_1:4311360-4311379 None:intergenic 45.0%
!! TGTTCAACCTCCACTTTTCC+AGG + chr1_1:4311705-4311724 None:intergenic 45.0%
CCCAATGTGGATGATTCTCT+AGG - chr1_1:4311813-4311832 Msa0002420:CDS 45.0%
GCCTAGAGAATCATCCACAT+TGG + chr1_1:4311817-4311836 None:intergenic 45.0%
ACAGATGCAAATCTGGCATG+AGG - chr1_1:4312357-4312376 Msa0002420:intron 45.0%
TGTTAAGGGGAGGTAATGAG+TGG + chr1_1:4312409-4312428 None:intergenic 45.0%
TCAACAAGGTCACACTAGTC+CGG + chr1_1:4312553-4312572 None:intergenic 45.0%
GGACTGAACCAACAAAGAAC+TGG - chr1_1:4312791-4312810 Msa0002420:intron 45.0%
TGTCATCTGTTCTCACTCAC+TGG - chr1_1:4312841-4312860 Msa0002420:intron 45.0%
TAGTTGCTGCCTATGAAGCA+TGG - chr1_1:4313089-4313108 Msa0002420:intron 45.0%
CTGCCTATGAAGCATGGATA+CGG - chr1_1:4313095-4313114 Msa0002420:intron 45.0%
TGTCCGTATCCATGCTTCAT+AGG + chr1_1:4313101-4313120 None:intergenic 45.0%
CATATGTGTCATGTCGGTGT+TGG - chr1_1:4313192-4313211 Msa0002420:intron 45.0%
GCAAGGACACTCTATGGATT+AGG + chr1_1:4313224-4313243 None:intergenic 45.0%
! CTGATGCTGTTGTTGTTGCA+CGG - chr1_1:4313452-4313471 Msa0002420:intron 45.0%
CAACTCAGGTACAACAAGTG+TGG + chr1_1:4313488-4313507 None:intergenic 45.0%
!! CACACTTGTTGTACCTGAGT+TGG - chr1_1:4313486-4313505 Msa0002420:intron 45.0%
GAGTTCCAGATAAGGTCATG+CGG - chr1_1:4313750-4313769 Msa0002420:intron 45.0%
ATTGACCGCATGACCTTATC+TGG + chr1_1:4313758-4313777 None:intergenic 45.0%
AGATAAGGTCATGCGGTCAA+TGG - chr1_1:4313757-4313776 Msa0002420:intron 45.0%
TGCCAATACTCTTGAGACGA+CGG - chr1_1:4313846-4313865 Msa0002420:intron 45.0%
TCACACCACTTTGCCTTTGA+TGG + chr1_1:4314272-4314291 None:intergenic 45.0%
CCTGAAAATGCCAGCATATC+TGG + chr1_1:4314548-4314567 None:intergenic 45.0%
! CCAGATATGCTGGCATTTTC+AGG - chr1_1:4314545-4314564 Msa0002420:intron 45.0%
ATACAGGATTTGAGCCCTGA+CGG - chr1_1:4315048-4315067 Msa0002420:intron 45.0%
TCCTCTTACTCCTCATGAAG+TGG - chr1_1:4315092-4315111 Msa0002420:intron 45.0%
CCTCTTACTCCTCATGAAGT+GGG - chr1_1:4315093-4315112 Msa0002420:intron 45.0%
AGCATCAAACCCACTTCATG+AGG + chr1_1:4315105-4315124 None:intergenic 45.0%
CATACCTGTATGTTGCATCG+GGG - chr1_1:4315151-4315170 Msa0002420:CDS 45.0%
ATACCTGTATGTTGCATCGG+GGG - chr1_1:4315152-4315171 Msa0002420:CDS 45.0%
GTTGCATCGGGGGAAATATA+CGG - chr1_1:4315162-4315181 Msa0002420:CDS 45.0%
TTGGGGAAAAGATCTCTGAG+AGG + chr1_1:4315207-4315226 None:intergenic 45.0%
TGTAATCAACAGCAGCTAGG+CGG + chr1_1:4315290-4315309 None:intergenic 45.0%
GCGCTAAGCTTCTTTGCATT+TGG + chr1_1:4315502-4315521 None:intergenic 45.0%
TTCTCACAGACACAAGTGCT+TGG + chr1_1:4315649-4315668 None:intergenic 45.0%
GGAACTGACGCCGAAATAAA+CGG - chr1_1:4315739-4315758 Msa0002420:intron 45.0%
!! TTTGGTCCCTTTCAAGTTGG+TGG - chr1_1:4315835-4315854 Msa0002420:CDS 45.0%
! GTGAGTGCTGTCATGAATTG+AGG + chr1_1:4316117-4316136 None:intergenic 45.0%
! GCACTTGGTTTGAGTCATGT+TGG + chr1_1:4316146-4316165 None:intergenic 45.0%
TTATACCACCTACAGCAAGC+TGG - chr1_1:4316167-4316186 Msa0002420:five_prime_UTR 45.0%
ATGTGTGTACGAGATGACCA+AGG - chr1_1:4316260-4316279 Msa0002420:five_prime_UTR 45.0%
! TGGACGATTAGAGCTGGTTT+AGG - chr1_1:4316353-4316372 Msa0002420:five_prime_UTR 45.0%
!! GAGAATGGGGCATTGTAGTG+TGG + chr1_1:4311086-4311105 None:intergenic 50.0%
CAATGCCCCATTCTCCAATG+GGG - chr1_1:4311091-4311110 Msa0002420:intron 50.0%
GACAAAACCCCAAATGGGTG+TGG - chr1_1:4311156-4311175 Msa0002420:three_prime_UTR 50.0%
GACTTCACCACACCCATTTG+GGG + chr1_1:4311166-4311185 None:intergenic 50.0%
CGACTTCACCACACCCATTT+GGG + chr1_1:4311167-4311186 None:intergenic 50.0%
ACGACTTCACCACACCCATT+TGG + chr1_1:4311168-4311187 None:intergenic 50.0%
AAATGGGTGTGGTGAAGTCG+TGG - chr1_1:4311167-4311186 Msa0002420:three_prime_UTR 50.0%
GTTAGAGTGAGTGTGGTTCG+TGG + chr1_1:4311200-4311219 None:intergenic 50.0%
GCAAATGACCGACCATGGAA+TGG + chr1_1:4311248-4311267 None:intergenic 50.0%
AAACCGCAAATGACCGACCA+TGG + chr1_1:4311253-4311272 None:intergenic 50.0%
!!! CGGTTTCATGCTTTTCGGGT+TGG - chr1_1:4311267-4311286 Msa0002420:three_prime_UTR 50.0%
CCGCAGTTTCTTCTCTACAC+TGG - chr1_1:4311357-4311376 Msa0002420:CDS 50.0%
!! TCCACTTTTCCAGGCAACGT+GGG + chr1_1:4311696-4311715 None:intergenic 50.0%
ATACGCGAGCGCATGTCAAA+TGG - chr1_1:4312743-4312762 Msa0002420:intron 50.0%
TACTTGCTTATTGCCGCGAG+CGG - chr1_1:4312767-4312786 Msa0002420:intron 50.0%
TGAAGCATGGATACGGACAC+CGG - chr1_1:4313102-4313121 Msa0002420:intron 50.0%
ACGCAGCAACCTATGAAGCA+AGG + chr1_1:4313241-4313260 None:intergenic 50.0%
TCGGGACACGCATGGTATAT+GGG + chr1_1:4313790-4313809 None:intergenic 50.0%
GCCAATACTCTTGAGACGAC+GGG - chr1_1:4313847-4313866 Msa0002420:intron 50.0%
! ACCCGTCGTCTCAAGAGTAT+TGG + chr1_1:4313851-4313870 None:intergenic 50.0%
TACTCTTGAGACGACGGGTA+AGG - chr1_1:4313852-4313871 Msa0002420:intron 50.0%
CAGGTTTGAGCCAGATATGC+TGG - chr1_1:4314535-4314554 Msa0002420:intron 50.0%
ACTGCCCCATGGGTGATAAA+AGG + chr1_1:4314708-4314727 None:intergenic 50.0%
AGTCAGGATTACTGCCCCAT+GGG + chr1_1:4314718-4314737 None:intergenic 50.0%
AAGTCAGGATTACTGCCCCA+TGG + chr1_1:4314719-4314738 None:intergenic 50.0%
CCCACTTCATGAGGAGTAAG+AGG + chr1_1:4315096-4315115 None:intergenic 50.0%
TTTCCCCCGATGCAACATAC+AGG + chr1_1:4315158-4315177 None:intergenic 50.0%
CATCGGGGGAAATATACGGT+GGG - chr1_1:4315166-4315185 Msa0002420:CDS 50.0%
ATCGGGGGAAATATACGGTG+GGG - chr1_1:4315167-4315186 Msa0002420:CDS 50.0%
! AAGATCTCTGAGAGGCTGCA+TGG + chr1_1:4315199-4315218 None:intergenic 50.0%
TACAAAGGAGATGCTTGCCG+AGG - chr1_1:4315233-4315252 Msa0002420:intron 50.0%
GTAATCAACAGCAGCTAGGC+GGG + chr1_1:4315289-4315308 None:intergenic 50.0%
ACAACAACGGTAACATGGCC+AGG - chr1_1:4315343-4315362 Msa0002420:intron 50.0%
AACATGGCCAGGATTCTTGC+TGG - chr1_1:4315354-4315373 Msa0002420:intron 50.0%
CCTTTGACCAGCAAGAATCC+TGG + chr1_1:4315364-4315383 None:intergenic 50.0%
CCAGGATTCTTGCTGGTCAA+AGG - chr1_1:4315361-4315380 Msa0002420:intron 50.0%
GTTCATGGCGAGGCATGAAA+TGG - chr1_1:4315525-4315544 Msa0002420:intron 50.0%
! AAGGTAAAGGCGTGCCAAAG+AGG - chr1_1:4315568-4315587 Msa0002420:intron 50.0%
GCGTGCCAAAGAGGATTCAT+GGG - chr1_1:4315577-4315596 Msa0002420:intron 50.0%
GCTCTCCCATGAATCCTCTT+TGG + chr1_1:4315585-4315604 None:intergenic 50.0%
TAAATGCGAGCTTAGGTGGC+CGG + chr1_1:4315705-4315724 None:intergenic 50.0%
ACTGACGCCGAAATAAACGG+AGG - chr1_1:4315742-4315761 Msa0002420:intron 50.0%
CGGCAAAGCAACTCAGTTAC+TGG - chr1_1:4316236-4316255 Msa0002420:five_prime_UTR 50.0%
CGTCACATGAGGCTACATGT+GGG - chr1_1:4316311-4316330 Msa0002420:five_prime_UTR 50.0%
GTTAGAAGTCCCACGTTGCC+TGG - chr1_1:4311684-4311703 Msa0002420:intron 55.0%
TCCCACGTTGCCTGGAAAAG+TGG - chr1_1:4311692-4311711 Msa0002420:intron 55.0%
!! CTCCACTTTTCCAGGCAACG+TGG + chr1_1:4311697-4311716 None:intergenic 55.0%
CACGTTGCCTGGAAAAGTGG+AGG - chr1_1:4311695-4311714 Msa0002420:intron 55.0%
! TGGTTGCTTTGGGCCCAATG+TGG - chr1_1:4311800-4311819 Msa0002420:CDS 55.0%
TACTGACGACTGGGTCACGA+GGG + chr1_1:4311842-4311861 None:intergenic 55.0%
TACGGACACCGGACATGACA+CGG - chr1_1:4313113-4313132 Msa0002420:intron 55.0%
GTCAGTGTCCGTGTCATGTC+CGG + chr1_1:4313124-4313143 None:intergenic 55.0%
GGGACACGCATGGTATATGG+GGG + chr1_1:4313788-4313807 None:intergenic 55.0%
CGGGACACGCATGGTATATG+GGG + chr1_1:4313789-4313808 None:intergenic 55.0%
CTCGGGACACGCATGGTATA+TGG + chr1_1:4313791-4313810 None:intergenic 55.0%
CATATACCATGCGTGTCCCG+AGG - chr1_1:4313789-4313808 Msa0002420:intron 55.0%
TGATTTCCTCGGGACACGCA+TGG + chr1_1:4313798-4313817 None:intergenic 55.0%
CACGCTTTCGTTCTCCGTCA+GGG + chr1_1:4315065-4315084 None:intergenic 55.0%
! CTGACGGAGAACGAAAGCGT+GGG - chr1_1:4315064-4315083 Msa0002420:intron 55.0%
GCATCGGGGGAAATATACGG+TGG - chr1_1:4315165-4315184 Msa0002420:CDS 55.0%
GAAGCTTAGCGCGCTGTTCA+TGG - chr1_1:4315510-4315529 Msa0002420:intron 55.0%
TGGCGAGGCATGAAATGGAC+CGG - chr1_1:4315530-4315549 Msa0002420:intron 55.0%
GGCGTGCCAAAGAGGATTCA+TGG - chr1_1:4315576-4315595 Msa0002420:intron 55.0%
AGAGGATTCATGGGAGAGCC+AGG - chr1_1:4315586-4315605 Msa0002420:intron 55.0%
GAGCCAGGAGAGATGAAAGC+TGG - chr1_1:4315601-4315620 Msa0002420:intron 55.0%
CGTCCAGCTTTCATCTCTCC+TGG + chr1_1:4315607-4315626 None:intergenic 55.0%
GGAGAGATGAAAGCTGGACG+AGG - chr1_1:4315607-4315626 Msa0002420:intron 55.0%
!! GAAGAGCTCCAGCTTGCTGT+AGG + chr1_1:4316178-4316197 None:intergenic 55.0%
!! GAACGGATTGGCGTCACATG+AGG - chr1_1:4316300-4316319 Msa0002420:five_prime_UTR 55.0%
GCGTCACATGAGGCTACATG+TGG - chr1_1:4316310-4316329 Msa0002420:five_prime_UTR 55.0%
CGGCAATGGACGATTAGAGC+TGG - chr1_1:4316347-4316366 Msa0002420:five_prime_UTR 55.0%
ACTGACGACTGGGTCACGAG+GGG + chr1_1:4311841-4311860 None:intergenic 60.0%
CTACTGACGACTGGGTCACG+AGG + chr1_1:4311843-4311862 None:intergenic 60.0%
TTGCTTATTGCCGCGAGCGG+AGG - chr1_1:4312770-4312789 Msa0002420:intron 60.0%
TTGGTTCAGTCCTCCGCTCG+CGG + chr1_1:4312783-4312802 None:intergenic 60.0%
CCACGCTTTCGTTCTCCGTC+AGG + chr1_1:4315066-4315085 None:intergenic 60.0%
CCTGACGGAGAACGAAAGCG+TGG - chr1_1:4315063-4315082 Msa0002420:intron 60.0%
GGTTTGATGCTGCGAGCGCT+TGG - chr1_1:4315114-4315133 Msa0002420:intron 60.0%
TTAGCGCGCTGTTCATGGCG+AGG - chr1_1:4315515-4315534 Msa0002420:intron 60.0%
!! GAGCTCCAGCTTGCTGTAGG+TGG + chr1_1:4316175-4316194 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 4310725 4316412 4310725 ID=Msa0002420;Name=Msa0002420
chr1_1 mRNA 4310725 4316412 4310725 ID=Msa0002420-mRNA-1;Parent=Msa0002420;Name=Msa0002420-mRNA-1;_AED=0.08;_eAED=0.08;_QI=444|1|1|1|0.88|0.8|10|482|538
chr1_1 exon 4310725 4311007 4310725 ID=Msa0002420-mRNA-1:exon:1344;Parent=Msa0002420-mRNA-1
chr1_1 exon 4311125 4311669 4311125 ID=Msa0002420-mRNA-1:exon:1343;Parent=Msa0002420-mRNA-1
chr1_1 exon 4311755 4312083 4311755 ID=Msa0002420-mRNA-1:exon:1342;Parent=Msa0002420-mRNA-1
chr1_1 exon 4312497 4312599 4312497 ID=Msa0002420-mRNA-1:exon:1341;Parent=Msa0002420-mRNA-1
chr1_1 exon 4312911 4313092 4312911 ID=Msa0002420-mRNA-1:exon:1340;Parent=Msa0002420-mRNA-1
chr1_1 exon 4313269 4313458 4313269 ID=Msa0002420-mRNA-1:exon:1339;Parent=Msa0002420-mRNA-1
chr1_1 exon 4313601 4313689 4313601 ID=Msa0002420-mRNA-1:exon:1338;Parent=Msa0002420-mRNA-1
chr1_1 exon 4314323 4314399 4314323 ID=Msa0002420-mRNA-1:exon:1337;Parent=Msa0002420-mRNA-1
chr1_1 exon 4315126 4315216 4315126 ID=Msa0002420-mRNA-1:exon:1336;Parent=Msa0002420-mRNA-1
chr1_1 exon 4315759 4316412 4315759 ID=Msa0002420-mRNA-1:exon:1335;Parent=Msa0002420-mRNA-1
chr1_1 five_prime_UTR 4315969 4316412 4315969 ID=Msa0002420-mRNA-1:five_prime_utr;Parent=Msa0002420-mRNA-1
chr1_1 CDS 4315759 4315968 4315759 ID=Msa0002420-mRNA-1:cds;Parent=Msa0002420-mRNA-1
chr1_1 CDS 4315126 4315216 4315126 ID=Msa0002420-mRNA-1:cds;Parent=Msa0002420-mRNA-1
chr1_1 CDS 4314323 4314399 4314323 ID=Msa0002420-mRNA-1:cds;Parent=Msa0002420-mRNA-1
chr1_1 CDS 4313601 4313689 4313601 ID=Msa0002420-mRNA-1:cds;Parent=Msa0002420-mRNA-1
chr1_1 CDS 4313269 4313458 4313269 ID=Msa0002420-mRNA-1:cds;Parent=Msa0002420-mRNA-1
chr1_1 CDS 4312911 4313092 4312911 ID=Msa0002420-mRNA-1:cds;Parent=Msa0002420-mRNA-1
chr1_1 CDS 4312497 4312599 4312497 ID=Msa0002420-mRNA-1:cds;Parent=Msa0002420-mRNA-1
chr1_1 CDS 4311755 4312083 4311755 ID=Msa0002420-mRNA-1:cds;Parent=Msa0002420-mRNA-1
chr1_1 CDS 4311324 4311669 4311324 ID=Msa0002420-mRNA-1:cds;Parent=Msa0002420-mRNA-1
chr1_1 three_prime_UTR 4311125 4311323 4311125 ID=Msa0002420-mRNA-1:three_prime_utr;Parent=Msa0002420-mRNA-1
chr1_1 three_prime_UTR 4310725 4311007 4310725 ID=Msa0002420-mRNA-1:three_prime_utr;Parent=Msa0002420-mRNA-1
Gene Sequence

>Msa0002420

ATGGGTGTGGTGAAGTCGTGGTTGTTATCCACGAACCACACTCACTCTAACACCAAAAATGCCATCTGTTCGAGATCCATTCCATGGTCGGTCATTTGCGGTTTCATGCTTTTCGGGTTGGGTCTCATTTCTCTTTTAACCGGTCACGTTGTTTCTCATCTTGAATGGTACTCTCAACGATTCGTTCACCGCAGTTTCTTCTCTACACTGGATGGAAATGATCATGCGCCAATTGATATTTGGGAATCACAATATTCTAAATACTACTACGGATGCAAAGAAAGGGGACGTCATTTTTATCCTGCTATACGCGAGCGCATGTCAAATGGCTACTTGCTTATTGCCGCGAGCGGAGGACTGAACCAACAAAGAACTGGGATAACTGATGCTGTTGTTGTTGCACGGATTCTTAATGCCACACTTGTTGTACCTGAGTTGGATCATAATTCTTTTTGGAAGGATGACAGTGACTTCGCCAACATTTTCGATGTTAATTGGTTCATTAATTATCTGGCAAAAGATGTTACTATTGTTAAAAGAGTTCCAGATAAGGTCATGCGGTCAATGGATAAACCCCCATATACCATGCGTGTCCCGAGGAAATCAGATCCTGAATATTATCTTGATCAAGTTTTGCCAATACTCTTGAGACGACGGGTTCTACAATTGACGAAGTTTGACTATAGACTTGCCAATGACCTTGATGATGAACTACAAAAACTACGTTGCCGTGTTAATTATCATGCTTTGAGATTTACAAAACCAATACGACAACTTGGTCAAAAAATTGTAATGAGGATGCGAAAGATGGCAAACCGTTATATAGCAGTCCATTTGAGGTTTGAGCCAGATATGCTGGCATTTTCAGGTTGTTATTTTGGTGGGGGTGAAAAAGAAAGACAAGAGCTTGGTGAAATCAGAAAAAGGTGGACAACATTGCCTGATTTGAGCCCTGACGGAGAACGAAAGCGTGGGAAATGTCCTCTTACTCCTCATGAAGTGGGTTTGATGCTGCGAGCGCTTGGTTATACAAATGACACATACCTGTATGTTGCATCGGGGGAAATATACGGTGGGGATGAAACCATGCAGCCTCTCAGAGATCTTTTCCCCAACATCTATACAAAGGAGATGCTTGCCGAGGAAGAATTGAAACCTTTTCTTTCATTCTCTTCCCGCCTAGCTGCTGTTGATTACATTGTTTGTGATGAAAGTAATGTATTTGTTGCTAACAACAACGGTAACATGGCCAGGATTCTTGCTGGTCAAAGGCGATATATGGGTCACAAGAGAACCATTAGACCAAATGCAAAGAAGCTTAGCGCGCTGTTCATGGCGAGGCATGAAATGGACCGGAATACATTTTCGAGAAAGGTAAAGGCGTGCCAAAGAGGATTCATGGGAGAGCCAGGAGAGATGAAAGCTGGACGAGGAGAGTTTCATGAATATCCAAGCACTTGTGTCTGTGAGAAACCATTTATAGACGAATTGAGTGAAGATGGAATCCGGCCACCTAAGCTCGCATTTAGAAATCTGACAATAGGAACTGACGCCGAAATAAACGGAGGAAATGAAGAAAGTTTTGAGCTACCAAAGCCAAATGAGAGAACATATTAA
Protein sequence

>Msa0002420

MGVVKSWLLSTNHTHSNTKNAICSRSIPWSVICGFMLFGLGLISLLTGHVVSHLEWYSQRFVHRSFFSTLDGNDHAPIDIWESQYSKYYYGCKERGRHFYPAIRERMSNGYLLIAASGGLNQQRTGITDAVVVARILNATLVVPELDHNSFWKDDSDFANIFDVNWFINYLAKDVTIVKRVPDKVMRSMDKPPYTMRVPRKSDPEYYLDQVLPILLRRRVLQLTKFDYRLANDLDDELQKLRCRVNYHALRFTKPIRQLGQKIVMRMRKMANRYIAVHLRFEPDMLAFSGCYFGGGEKERQELGEIRKRWTTLPDLSPDGERKRGKCPLTPHEVGLMLRALGYTNDTYLYVASGEIYGGDETMQPLRDLFPNIYTKEMLAEEELKPFLSFSSRLAAVDYIVCDESNVFVANNNGNMARILAGQRRYMGHKRTIRPNAKKLSALFMARHEMDRNTFSRKVKACQRGFMGEPGEMKAGRGEFHEYPSTCVCEKPFIDELSEDGIRPPKLAFRNLTIGTDAEINGGNEESFELPKPNERTY*