AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0331830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0331830 MtrunA17_Chr2g0332961 76.781 379 56 7 33 406 2 353 9.59e-177 503
Msa0331830 MtrunA17_Chr5g0416271 44.961 516 163 11 8 436 1 482 3.18e-115 351
Msa0331830 MtrunA17_Chr2g0332951 77.974 227 26 3 214 436 1 207 7.68e-111 329
Msa0331830 MtrunA17_Chr2g0325231 54.133 375 110 8 121 437 500 870 1.08e-95 311
Msa0331830 MtrunA17_Chr2g0325231 36.137 321 140 9 28 290 52 365 7.60e-27 115
Msa0331830 MtrunA17_Chr2g0325231 36.782 174 90 2 120 276 450 620 1.81e-15 80.1
Msa0331830 MtrunA17_Chr2g0325231 41.333 150 74 3 133 268 305 454 1.39e-14 77.0
Msa0331830 MtrunA17_Chr2g0325231 32.068 237 85 6 139 301 371 605 4.67e-14 75.5
Msa0331830 MtrunA17_Chr2g0325701 41.513 542 173 12 29 436 58 589 9.45e-87 280
Msa0331830 MtrunA17_Chr6g0471251 45.202 396 141 8 123 445 284 676 2.78e-78 262
Msa0331830 MtrunA17_Chr6g0471251 33.117 308 130 6 23 276 75 360 3.30e-25 110
Msa0331830 MtrunA17_Chr2g0325611 42.004 469 196 11 41 448 49 502 2.79e-77 255
Msa0331830 MtrunA17_Chr2g0325351 39.677 557 180 13 27 436 38 585 6.70e-77 256
Msa0331830 MtrunA17_Chr2g0325861 49.315 365 158 9 88 437 468 820 1.29e-76 259
Msa0331830 MtrunA17_Chr2g0325861 41.045 268 112 10 51 280 65 324 1.05e-28 121
Msa0331830 MtrunA17_Chr2g0325861 30.159 252 141 5 46 276 209 446 3.85e-13 72.4
Msa0331830 MtrunA17_Chr2g0325621 49.702 336 120 6 134 437 241 559 1.56e-72 244
Msa0331830 MtrunA17_Chr2g0333341 49.835 303 116 5 142 435 332 607 4.89e-68 231
Msa0331830 MtrunA17_Chr2g0280141 45.075 335 141 8 139 437 389 716 3.91e-65 227
Msa0331830 MtrunA17_Chr2g0280141 35.583 163 98 2 121 276 255 417 1.79e-14 76.6
Msa0331830 MtrunA17_Chr2g0325661 49.852 337 121 6 139 437 448 774 5.92e-65 228
Msa0331830 MtrunA17_Chr2g0325661 34.513 339 151 9 1 292 67 381 8.67e-35 140
Msa0331830 MtrunA17_Chr2g0325661 39.130 138 73 1 139 276 280 406 7.13e-14 75.1
Msa0331830 MtrunA17_Chr2g0325661 38.411 151 90 1 139 286 336 486 6.05e-13 72.0
Msa0331830 MtrunA17_Chr2g0325321 45.226 398 159 8 88 436 371 758 9.46e-63 220
Msa0331830 MtrunA17_Chr2g0325321 38.491 265 130 11 33 277 29 280 7.46e-24 106
Msa0331830 MtrunA17_Chr2g0325711 39.192 421 207 9 63 440 324 738 1.34e-60 215
Msa0331830 MtrunA17_Chr2g0325711 35.581 267 132 6 33 277 57 305 4.37e-25 110
Msa0331830 MtrunA17_Chr2g0325811 38.579 394 164 9 135 456 372 759 1.70e-57 206
Msa0331830 MtrunA17_Chr2g0325811 37.755 294 134 12 18 277 57 335 3.10e-24 107
Msa0331830 MtrunA17_Chr2g0325811 26.966 267 147 6 55 273 205 471 4.31e-11 65.9
Msa0331830 MtrunA17_Chr2g0325361 40.220 455 163 12 88 437 525 975 4.37e-55 201
Msa0331830 MtrunA17_Chr2g0325361 38.579 197 107 4 87 276 496 685 9.78e-23 103
Msa0331830 MtrunA17_Chr2g0325361 41.290 155 74 2 139 276 475 629 3.69e-21 98.2
Msa0331830 MtrunA17_Chr2g0325361 37.017 181 89 3 121 276 323 503 2.15e-14 76.6
Msa0331830 MtrunA17_Chr2g0325361 50.000 94 37 3 49 142 42 125 1.41e-13 73.9
Msa0331830 MtrunA17_Chr2g0325361 38.798 183 77 3 133 280 279 461 7.04e-13 72.0
Msa0331830 MtrunA17_Chr2g0325361 37.931 174 83 5 121 276 365 531 4.54e-12 69.3
Msa0331830 MtrunA17_Chr5g0434761 59.375 160 61 2 279 437 7 163 1.07e-49 172
Msa0331830 MtrunA17_Chr2g0325651 38.438 320 118 7 30 276 53 366 4.93e-45 164
Msa0331830 MtrunA17_Chr2g0325651 42.222 135 60 5 109 232 259 386 1.08e-13 73.2
Msa0331830 MtrunA17_Chr2g0325261 40.071 282 117 5 30 276 39 303 8.08e-45 160
Msa0331830 MtrunA17_Chr2g0325341 40.071 282 117 5 30 276 39 303 8.08e-45 160
Msa0331830 MtrunA17_Chr2g0325771 63.006 173 53 3 272 436 3 172 1.20e-44 156
Msa0331830 MtrunA17_Chr2g0325631 60.241 166 49 3 286 437 1 163 9.62e-41 148
Msa0331830 MtrunA17_Chr2g0325241 35.013 397 152 10 28 357 66 423 5.73e-38 145
Msa0331830 MtrunA17_Chr2g0325331 51.149 174 68 2 286 445 1 171 6.27e-38 137
Msa0331830 MtrunA17_Chr5g0434741 37.970 266 120 5 30 257 40 298 3.71e-36 137
Msa0331830 MtrunA17_Chr2g0325781 37.234 282 99 10 29 269 57 301 2.28e-33 129
Msa0331830 MtrunA17_Chr3g0140591 50.588 170 66 3 281 436 4 169 2.42e-33 125
Msa0331830 MtrunA17_Chr2g0325291 59.091 132 51 1 306 437 21 149 7.65e-33 125
Msa0331830 MtrunA17_Chr2g0325741 38.525 244 117 8 33 264 82 304 1.80e-31 124
Msa0331830 MtrunA17_Chr2g0325761 37.801 291 125 7 32 276 79 359 4.66e-27 116
Msa0331830 MtrunA17_Chr2g0325761 40.741 162 81 2 117 274 319 469 1.12e-12 70.9
Msa0331830 MtrunA17_Chr2g0325761 39.316 117 67 1 118 230 467 583 7.02e-11 65.1
Msa0331830 MtrunA17_Chr2g0325221 36.393 305 145 12 8 278 51 340 2.19e-26 114
Msa0331830 MtrunA17_Chr2g0325221 40.936 171 72 3 121 273 316 475 6.72e-19 90.5
Msa0331830 MtrunA17_Chr2g0325221 37.557 221 100 4 87 276 373 586 1.32e-16 83.6
Msa0331830 MtrunA17_Chr7g0235901 34.828 290 116 9 58 289 1 275 2.29e-25 106
Msa0331830 MtrunA17_Chr7g0235901 38.690 168 74 5 121 263 148 311 9.93e-13 69.3
Msa0331830 MtrunA17_Chr7g0235901 35.484 155 83 2 139 276 156 310 1.21e-12 68.9
Msa0331830 MtrunA17_Chr2g0325691 42.541 181 59 2 141 276 531 711 1.18e-23 105
Msa0331830 MtrunA17_Chr2g0325691 37.049 305 117 10 29 276 59 345 6.23e-22 100
Msa0331830 MtrunA17_Chr2g0325691 42.384 151 80 2 133 276 307 457 7.26e-18 87.4
Msa0331830 MtrunA17_Chr2g0325691 35.865 237 94 6 98 276 321 557 2.71e-16 82.4
Msa0331830 MtrunA17_Chr2g0325691 33.953 215 90 5 121 283 407 621 5.08e-12 68.9
Msa0331830 MtrunA17_Chr8g0361651 34.364 291 167 7 158 440 32 306 1.49e-23 104
Msa0331830 MtrunA17_Chr4g0044221 33.904 292 148 10 112 368 10 291 3.33e-21 94.7
Msa0331830 MtrunA17_Chr2g0325281 34.505 313 131 13 33 283 29 329 5.30e-21 97.1
Msa0331830 MtrunA17_Chr2g0325281 36.715 207 111 5 81 276 222 419 2.22e-17 85.5
Msa0331830 MtrunA17_Chr2g0325281 45.000 120 63 1 141 257 463 582 9.08e-16 80.5
Msa0331830 MtrunA17_Chr2g0325281 46.491 114 55 2 115 224 463 574 1.31e-13 73.6
Msa0331830 MtrunA17_Chr2g0325281 33.333 177 84 4 134 290 246 408 1.41e-11 67.4
Msa0331830 MtrunA17_Chr2g0333481 48.305 118 31 4 452 569 21 108 5.90e-21 96.7
Msa0331830 MtrunA17_Chr2g0325641 38.318 214 98 4 96 280 102 310 5.36e-20 91.3
Msa0331830 MtrunA17_Chr2g0325641 34.225 187 85 3 140 288 55 241 5.17e-12 67.4
Msa0331830 MtrunA17_Chr2g0327481 45.763 118 34 4 452 569 21 108 2.84e-19 84.0
Msa0331830 MtrunA17_Chr2g0333451 46.610 118 33 4 452 569 21 108 7.02e-19 91.3
Msa0331830 MtrunA17_Chr2g0325751 42.000 150 59 2 127 276 2 123 1.33e-18 83.2
Msa0331830 MtrunA17_Chr2g0325791 53.261 92 43 0 139 230 65 156 2.37e-18 86.3
Msa0331830 MtrunA17_Chr2g0325721 49.091 110 46 2 33 142 49 148 4.51e-18 87.4
Msa0331830 MtrunA17_Chr2g0325721 30.116 259 146 7 46 276 201 452 5.50e-11 65.1
Msa0331830 MtrunA17_Chr7g0235921 67.045 88 25 2 350 437 1 84 3.51e-16 74.7
Msa0331830 MtrunA17_Chr5g0434751 35.000 220 63 4 141 280 56 275 1.17e-15 77.8
Msa0331830 MtrunA17_Chr5g0434751 33.516 182 76 3 142 278 1 182 4.48e-13 70.1
Msa0331830 MtrunA17_Chr4g0024061 36.691 139 56 3 302 440 447 553 3.91e-14 75.5
Msa0331830 MtrunA17_Chr2g0325801 48.052 77 32 1 83 159 57 125 3.11e-13 66.6
Msa0331830 MtrunA17_Chr4g0002981 38.983 118 42 4 452 569 21 108 6.30e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0331830 AT5G27220.1 30.149 335 193 13 105 431 497 798 2.01e-13 73.9
Msa0331830 AT5G27220.3 30.149 335 193 13 105 431 497 798 2.01e-13 73.9
Msa0331830 AT5G27220.4 30.149 335 193 13 105 431 497 798 2.48e-13 73.9
Msa0331830 AT5G27220.2 30.149 335 193 13 105 431 497 798 2.48e-13 73.9

Find 169 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTCAATATTTCTCTTTA+TGG 0.075175 2_4:+47885832 None:intergenic
CTTCGTCAAGCAAGTAAATT+TGG 0.111151 2_4:-47887065 Msa0331830:five_prime_UTR
TTTCTGCCTGCATTTATTTA+AGG 0.141891 2_4:-47881313 Msa0331830:three_prime_UTR
TATATATGTTATAGGTTCTT+TGG 0.190740 2_4:-47886294 Msa0331830:intron
TACTCTACATTGGATCATTT+AGG 0.210559 2_4:-47886983 Msa0331830:five_prime_UTR
TATGGAAAATGGATGTTTAT+TGG 0.215467 2_4:-47882483 Msa0331830:CDS
CTGTTTCAGGGTTGTGGTTT+TGG 0.223844 2_4:-47882541 Msa0331830:intron
CTAGTGCTGATTTGATTAAA+TGG 0.234024 2_4:-47881604 Msa0331830:three_prime_UTR
GTAGCAACTTCACTAGAATT+TGG 0.247308 2_4:+47881575 None:intergenic
CTTCGTTGAATATGAATAAA+AGG 0.247349 2_4:-47885970 Msa0331830:CDS
TACACAATCAATTGAAATTA+TGG 0.250565 2_4:-47887039 Msa0331830:five_prime_UTR
AGAAAATACTGAAAATTCTT+TGG 0.251631 2_4:-47884780 Msa0331830:CDS
TTAATACTCATTTGTGTAGA+TGG 0.261231 2_4:-47881352 Msa0331830:three_prime_UTR
AGATCCAGCAAAACTTGTTT+TGG 0.272394 2_4:-47884975 Msa0331830:CDS
ACAGCTTTGTCTCCCTTCTT+AGG 0.285668 2_4:+47884923 None:intergenic
CTGCAAAGAGCTAGAAAATA+AGG 0.286190 2_4:-47885807 Msa0331830:CDS
GAGTCAAAGCTGAATAATTT+TGG 0.290126 2_4:-47885437 Msa0331830:CDS
AGTTTCTAACACGTCCTATC+TGG 0.291974 2_4:-47881165 Msa0331830:three_prime_UTR
ACTCTACATTGGATCATTTA+GGG 0.295935 2_4:-47886982 Msa0331830:five_prime_UTR
AACCACTGTTTCAAGGTTAA+AGG 0.302599 2_4:-47886704 Msa0331830:five_prime_UTR
CTTACACAAGATTTAATATC+TGG 0.303638 2_4:+47884848 None:intergenic
AAGAGGGATTGCATCATCTT+TGG 0.313163 2_4:-47882128 Msa0331830:CDS
GATGGAACAAGTGAGGAATT+TGG 0.315869 2_4:-47885025 Msa0331830:CDS
ACAATACTTGTGCGTGATTC+GGG 0.321400 2_4:+47883212 None:intergenic
CAGACTCAAGTTCCTTAACT+TGG 0.324284 2_4:+47885780 None:intergenic
ACAGTGTTCCAGCATATAAC+AGG 0.326194 2_4:-47886570 Msa0331830:five_prime_UTR
AGATAGCTGTAAAGCTGTTT+AGG 0.328283 2_4:-47884649 Msa0331830:CDS
AATTTATAATAAAACAAGTT+TGG 0.328738 2_4:-47881210 Msa0331830:three_prime_UTR
TCATTTAGGGTTAGATTTGT+AGG 0.342647 2_4:-47886969 Msa0331830:five_prime_UTR
TTCAATTTCGTATTAGTGAT+TGG 0.351926 2_4:-47883256 Msa0331830:CDS
CAAATGCAATTTACCGAAAT+AGG 0.364134 2_4:-47886772 Msa0331830:five_prime_UTR
TCCTTTCAGAGTCCTGTGAT+TGG 0.368551 2_4:-47883283 Msa0331830:intron
GTCCAACCCTAGACCTATTT+CGG 0.368933 2_4:+47886759 None:intergenic
TCAAAAGAGGAGGAATTTAA+AGG 0.372635 2_4:-47885593 Msa0331830:CDS
CTTGGAAAGCAACAATTCCT+TGG 0.374250 2_4:-47886059 Msa0331830:CDS
CAATTCAGTATCACCATTGA+TGG 0.374340 2_4:-47885043 Msa0331830:CDS
AGCTGCTATTCAATTGGTTA+AGG 0.381444 2_4:-47881384 Msa0331830:three_prime_UTR
CTGTCAAATAACCTCTTAAC+TGG 0.388338 2_4:+47886091 None:intergenic
GACAATACTTGTGCGTGATT+CGG 0.388703 2_4:+47883211 None:intergenic
TTATCGATGGCGACGATGTC+AGG 0.391493 2_4:-47886543 Msa0331830:intron
GAAAATTCTTTGGAGGTTCT+CGG 0.397484 2_4:-47884770 Msa0331830:CDS
AGGACGTGTTAGAAACTCAT+AGG 0.402018 2_4:+47881171 None:intergenic
TTCCTCACTTGTTCCATCAA+TGG 0.405596 2_4:+47885030 None:intergenic
AATTTCAGTATGATTACAAC+TGG 0.408474 2_4:-47881959 Msa0331830:intron
ATTATAAATTTATGATATGA+AGG 0.409406 2_4:+47881223 None:intergenic
TTGTCTCCCTTCTTAGGCAG+TGG 0.411661 2_4:+47884929 None:intergenic
TTCTTAGGCAGTGGAATCGT+GGG 0.412112 2_4:+47884938 None:intergenic
ACTCTAAGCTGCTATTCAAT+TGG 0.415525 2_4:-47881390 Msa0331830:three_prime_UTR
ATTGATTGAGAATTTCCATA+TGG 0.416356 2_4:+47887359 None:intergenic
TAATACTCATTTGTGTAGAT+GGG 0.416368 2_4:-47881351 Msa0331830:three_prime_UTR
CCTCTTGGTTGTGGTGAAGA+GGG 0.417703 2_4:-47882144 Msa0331830:CDS
TGCATGCTGTTTCAGGGTTG+TGG 0.417899 2_4:-47882547 Msa0331830:intron
TCTGAAAAGAATATACTTGA+TGG 0.418087 2_4:-47885761 Msa0331830:CDS
TTGATTCGTTGGTAAATTGT+TGG 0.419166 2_4:+47881878 None:intergenic
CAATTTACCGAAATAGGTCT+AGG 0.428831 2_4:-47886766 Msa0331830:five_prime_UTR
TTCGTATTAGTGATTGGAGT+TGG 0.431108 2_4:-47883250 Msa0331830:CDS
GGAATTTGAATCAAAAGAAA+AGG 0.431175 2_4:-47885645 Msa0331830:CDS
TTCGTCAAGCAAGTAAATTT+GGG 0.431447 2_4:-47887064 Msa0331830:five_prime_UTR
GAAGGAAGAAGTAGATCAAA+AGG 0.433938 2_4:-47886231 Msa0331830:intron
TTGGATTTAACAGCACGAAC+TGG 0.436687 2_4:-47886275 Msa0331830:CDS
AATTGTTGGCCACAGGGTCC+TGG 0.438116 2_4:+47881892 None:intergenic
CTTTGAGATTGTCCTCAGCT+TGG 0.447230 2_4:+47885507 None:intergenic
AAATAAGGAGACCCAAGTTA+AGG 0.448359 2_4:-47885792 Msa0331830:CDS
GGGATTCTTACTTCAACAAT+CGG 0.449081 2_4:-47887142 Msa0331830:five_prime_UTR
ATTTGACAGCAACAATTCCT+TGG 0.450325 2_4:-47886077 Msa0331830:CDS
TCAGATTTAAGAATCCAGAT+AGG 0.450923 2_4:+47881151 None:intergenic
GTCGATGTTGAGTCAGTCCC+AGG 0.451314 2_4:-47886922 Msa0331830:five_prime_UTR
CAAGGAATTGTTGCTTTCCA+AGG 0.451728 2_4:+47886060 None:intergenic
ACATTTCGCGAGCCGACAAA+AGG 0.460184 2_4:-47885666 Msa0331830:CDS
CTACTGCACTGCCAGTTAAG+AGG 0.461854 2_4:-47886102 Msa0331830:CDS
TCCTCTTGGTTGTGGTGAAG+AGG 0.463765 2_4:-47882145 Msa0331830:CDS
TGGCCACAGGGTCCTGGACC+CGG 0.463853 2_4:+47881898 None:intergenic
CACGATTCCACTGCCTAAGA+AGG 0.465950 2_4:-47884936 Msa0331830:CDS
CTGATTCAAAGTTCTTCACT+AGG 0.467265 2_4:+47885696 None:intergenic
TCAGATTGAAGTACAAATCA+AGG 0.469530 2_4:-47885465 Msa0331830:CDS
GTTGGTAAATTGTTGGCCAC+AGG 0.469858 2_4:+47881885 None:intergenic
GCAACAGTTTATGAGGCAAC+AGG 0.476537 2_4:-47887291 Msa0331830:five_prime_UTR
AAATTATTCAGCTTTGACTC+AGG 0.479176 2_4:+47885440 None:intergenic
GTAAAGCTGTTTAGGACCCT+GGG 0.479502 2_4:-47884641 Msa0331830:CDS
CTCTGATTCAGTTTCGAAGA+GGG 0.480374 2_4:+47886671 None:intergenic
ATGGAACACACTCAGATGCT+TGG 0.482211 2_4:-47887254 Msa0331830:five_prime_UTR
AAATACTGAAAATTCTTTGG+AGG 0.482682 2_4:-47884777 Msa0331830:CDS
TGGAACACACTCAGATGCTT+GGG 0.484164 2_4:-47887253 Msa0331830:five_prime_UTR
TGTAAAGCTGTTTAGGACCC+TGG 0.484740 2_4:-47884642 Msa0331830:CDS
GTCGTGGAACCACTGTTTCA+AGG 0.485473 2_4:-47886711 Msa0331830:five_prime_UTR
AATCATTTGAGGAATGCAAC+GGG 0.489095 2_4:-47885886 Msa0331830:CDS
AGTGTTTGAAGCAAAGGAAG+AGG 0.504885 2_4:-47885561 Msa0331830:CDS
GAATTATCAGCTGATTTGCC+TGG 0.507013 2_4:+47885947 None:intergenic
TTGGCCCTAGCCTCTGATCC+AGG 0.511680 2_4:-47881854 Msa0331830:intron
AAATTGAGGCATAGATAAAA+CGG 0.514123 2_4:-47886636 Msa0331830:five_prime_UTR
GTTTACAGCTGCAACAAGTC+AGG 0.515862 2_4:-47882076 Msa0331830:intron
TTGAATATGAATAAAAGGCC+AGG 0.518437 2_4:-47885965 Msa0331830:CDS
AATTTACCAACGAATCAAGT+TGG 0.519521 2_4:-47881873 Msa0331830:CDS
CTAGGGCCAACTTGATTCGT+TGG 0.520186 2_4:+47881867 None:intergenic
AGACTCAAGTTCCTTAACTT+GGG 0.522775 2_4:+47885781 None:intergenic
TCTCGAGTTTCAGATCAATC+AGG 0.522869 2_4:-47886593 Msa0331830:five_prime_UTR
GGGTCCTACCTACTCTACAT+TGG 0.523574 2_4:-47886993 Msa0331830:five_prime_UTR
CACGAACTGGACAGCCAAGT+GGG 0.524603 2_4:-47886262 Msa0331830:CDS
CTTCTTAGGCAGTGGAATCG+TGG 0.525924 2_4:+47884937 None:intergenic
AGCCGCAGCAACAGTTTATG+AGG 0.526069 2_4:-47887298 Msa0331830:five_prime_UTR
AAATAGGTCTAGGGTTGGAC+AGG 0.529285 2_4:-47886756 Msa0331830:five_prime_UTR
ACATCTTCTCTTCAAACCGC+AGG 0.530472 2_4:+47882097 None:intergenic
AGATGTCTTCCTCTTGGTTG+TGG 0.533622 2_4:-47882153 Msa0331830:CDS
AAACTGAATCAGAGGCGGGC+AGG 0.535383 2_4:-47886662 Msa0331830:five_prime_UTR
GATGGCTAGACACCGGGTCC+AGG 0.535555 2_4:-47881910 Msa0331830:CDS
CTGATTTGCAGCAATCACAT+AGG 0.539868 2_4:-47887214 Msa0331830:five_prime_UTR
TTCGAAACTGAATCAGAGGC+GGG 0.540211 2_4:-47886666 Msa0331830:five_prime_UTR
GCAACTTCACTAGAATTTGG+AGG 0.556939 2_4:+47881578 None:intergenic
GCTAACCTGGATCAGAGGCT+AGG 0.558312 2_4:+47881849 None:intergenic
AAATAGAAGAGTGGCGATTG+TGG 0.559419 2_4:-47885856 Msa0331830:CDS
AATTTATGATATGAAGGGTA+GGG 0.561012 2_4:+47881229 None:intergenic
TTGGTAAATTGTTGGCCACA+GGG 0.565907 2_4:+47881886 None:intergenic
TACCGAAATAGGTCTAGGGT+TGG 0.567009 2_4:-47886761 Msa0331830:five_prime_UTR
CTAACCTGGATCAGAGGCTA+GGG 0.567094 2_4:+47881850 None:intergenic
GAAGGAGTTCCAGTCAAAAG+AGG 0.567276 2_4:-47885606 Msa0331830:CDS
ACTTGTGATGAGATATGCAT+CGG 0.568894 2_4:-47887163 Msa0331830:five_prime_UTR
TTTCAACATAGACTGAATAG+AGG 0.572020 2_4:-47881439 Msa0331830:three_prime_UTR
AGTGAAAGTGTTTGAAGCAA+AGG 0.574401 2_4:-47885567 Msa0331830:CDS
TTTCTTAACAGAAAATTCCA+AGG 0.575654 2_4:+47886042 None:intergenic
AAATCATTTGAGGAATGCAA+CGG 0.576495 2_4:-47885887 Msa0331830:CDS
TAAATGATCCAATGTAGAGT+AGG 0.577283 2_4:+47886985 None:intergenic
ATGCATATCTCATCACAAGT+TGG 0.578892 2_4:+47887166 None:intergenic
AATACTCATTTGTGTAGATG+GGG 0.580870 2_4:-47881350 Msa0331830:three_prime_UTR
AAATTTATGATATGAAGGGT+AGG 0.581099 2_4:+47881228 None:intergenic
AATTTACCGAAATAGGTCTA+GGG 0.584576 2_4:-47886765 Msa0331830:five_prime_UTR
TCAAACGATGGCTAGACACC+GGG 0.587136 2_4:-47881916 Msa0331830:CDS
CTTGTGATGAGATATGCATC+GGG 0.588799 2_4:-47887162 Msa0331830:five_prime_UTR
CATCTTCTCTTCAAACCGCA+GGG 0.594174 2_4:+47882098 None:intergenic
TACCTTTAACCTTGAAACAG+TGG 0.594206 2_4:+47886702 None:intergenic
ACGATTCCACTGCCTAAGAA+GGG 0.594525 2_4:-47884935 Msa0331830:CDS
TTATAAATTTATGATATGAA+GGG 0.594645 2_4:+47881224 None:intergenic
AGGCGGGCAGGTCAAAATTG+AGG 0.596016 2_4:-47886650 Msa0331830:five_prime_UTR
TAAATGCTAACCTGGATCAG+AGG 0.598403 2_4:+47881844 None:intergenic
ATATGCAGATACATCTAACA+TGG 0.600498 2_4:-47885071 Msa0331830:intron
CCTCTTCGAAACTGAATCAG+AGG 0.603859 2_4:-47886670 Msa0331830:five_prime_UTR
ACAGGCAAATGCAACCGACA+TGG 0.606032 2_4:-47887273 Msa0331830:five_prime_UTR
CCTCTGATTCAGTTTCGAAG+AGG 0.606640 2_4:+47886670 None:intergenic
TAGTAAGTTGCTTCAAACGA+TGG 0.610073 2_4:-47881928 Msa0331830:CDS
TTTCAAGGTTAAAGGTAGAA+CGG 0.611327 2_4:-47886696 Msa0331830:five_prime_UTR
AAATTGAACTCTCCAATCAC+AGG 0.611839 2_4:+47883271 None:intergenic
AATTGAAATTATGGCTCCAG+AGG 0.613530 2_4:-47887030 Msa0331830:five_prime_UTR
TTCAAACGATGGCTAGACAC+CGG 0.617499 2_4:-47881917 Msa0331830:CDS
GGACGTGTTAGAAACTCATA+GGG 0.620582 2_4:+47881172 None:intergenic
CTTCGAAACTGAATCAGAGG+CGG 0.621827 2_4:-47886667 Msa0331830:five_prime_UTR
TGATCCAATGTAGAGTAGGT+AGG 0.623849 2_4:+47886989 None:intergenic
GGAGTTCCAGTCAAAAGAGG+AGG 0.625446 2_4:-47885603 Msa0331830:CDS
ACGAACTGGACAGCCAAGTG+GGG 0.626248 2_4:-47886261 Msa0331830:CDS
CTGAAACTCGAGACTGTGGT+TGG 0.628635 2_4:+47886603 None:intergenic
GACTTTATGTACAAAACCCA+GGG 0.629177 2_4:+47884625 None:intergenic
ATTAGTGATTGGAGTTGGAG+AGG 0.630361 2_4:-47883245 Msa0331830:CDS
GCAAAGGAAGAGGAATTCGA+AGG 0.634363 2_4:-47885551 Msa0331830:CDS
CACCATTGATGGAACAAGTG+AGG 0.634662 2_4:-47885032 Msa0331830:CDS
TGCCTCATAAACTGTTGCTG+CGG 0.635819 2_4:+47887296 None:intergenic
TGCAAGTTCTTTCCTCAGCG+AGG 0.638740 2_4:+47885919 None:intergenic
AGATCGCACTGATTGAACAA+TGG 0.638838 2_4:-47887333 Msa0331830:five_prime_UTR
AGACTTTATGTACAAAACCC+AGG 0.639555 2_4:+47884624 None:intergenic
CAGTGTTCCAGCATATAACA+GGG 0.642702 2_4:-47886569 Msa0331830:five_prime_UTR
GGAATCAACAAATAGAAGAG+TGG 0.642926 2_4:-47885865 Msa0331830:CDS
GCACGAACTGGACAGCCAAG+TGG 0.645283 2_4:-47886263 Msa0331830:CDS
CATCTGAGTGTGTTCCATGT+CGG 0.651860 2_4:+47887259 None:intergenic
CCCTCTTCACCACAACCAAG+AGG 0.652179 2_4:+47882144 None:intergenic
GCAATTTGAAAACCAAGCTG+AGG 0.662165 2_4:-47885519 Msa0331830:CDS
CGAACTGGACAGCCAAGTGG+GGG 0.663711 2_4:-47886260 Msa0331830:CDS
AAATCAGCAACATTATTCTG+TGG 0.667333 2_4:+47887230 None:intergenic
TCTTAGGCAGTGGAATCGTG+GGG 0.670339 2_4:+47884939 None:intergenic
TGATCTGAAACTCGAGACTG+TGG 0.671172 2_4:+47886599 None:intergenic
ACACCGGGTCCAGGACCCTG+TGG 0.680021 2_4:-47881901 Msa0331830:CDS
TCGATGTTGAGTCAGTCCCA+GGG 0.685577 2_4:-47886921 Msa0331830:five_prime_UTR
ATCTTTGGAAGATTGCCCTG+CGG 0.716047 2_4:-47882113 Msa0331830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAATTTTAAAAAAATT+AGG + chr2_4:47886880-47886899 None:intergenic 0.0%
!! AACATATATATTATGATAAA+CGG + chr2_4:47882229-47882248 None:intergenic 10.0%
!! TATCATAATATATATGTTAT+AGG - chr2_4:47882231-47882250 Msa0331830:intron 10.0%
!!! ATTTATTTAAGGTTTTTAAT+TGG - chr2_4:47887231-47887250 Msa0331830:five_prime_UTR 10.0%
!! TTATAAATTTATGATATGAA+GGG + chr2_4:47887312-47887331 None:intergenic 10.0%
!! ATTATAAATTTATGATATGA+AGG + chr2_4:47887313-47887332 None:intergenic 10.0%
!! AATTTATAATAAAACAAGTT+TGG - chr2_4:47887323-47887342 Msa0331830:five_prime_UTR 10.0%
!! ATTAATAAGATATTAGATCT+AGG - chr2_4:47884333-47884352 Msa0331830:intron 15.0%
!! TTAACAAAAAACTAACAAAT+TGG + chr2_4:47884550-47884569 None:intergenic 15.0%
!! ATACGAATATAACATTTAAA+AGG + chr2_4:47885211-47885230 None:intergenic 15.0%
!!! TTCTTTTCTTATAAAAAAAG+AGG + chr2_4:47885493-47885512 None:intergenic 15.0%
!! AGAAAAATATATGTATGATA+AGG - chr2_4:47885509-47885528 Msa0331830:CDS 15.0%
!! TTAAAAAAATTAGGATGATA+GGG + chr2_4:47886871-47886890 None:intergenic 15.0%
!! TTTAAAAAAATTAGGATGAT+AGG + chr2_4:47886872-47886891 None:intergenic 15.0%
!! TACACAATCAATTGAAATTA+TGG - chr2_4:47881494-47881513 Msa0331830:three_prime_UTR 20.0%
!!! TAACATTTTAGTTAATTGCA+AGG - chr2_4:47881729-47881748 Msa0331830:intron 20.0%
!! AATGAAATAAGATGATTATC+AGG + chr2_4:47882098-47882117 None:intergenic 20.0%
!! TATATATGTTATAGGTTCTT+TGG - chr2_4:47882239-47882258 Msa0331830:intron 20.0%
!! TAAATTCTGTAGTTAAATGA+TGG - chr2_4:47882378-47882397 Msa0331830:intron 20.0%
!!! ATTTTCTGTTAAGAAATCAA+AGG - chr2_4:47882498-47882517 Msa0331830:CDS 20.0%
!! ATTGTTGAAAAAATCATTTG+AGG - chr2_4:47882636-47882655 Msa0331830:intron 20.0%
!! TATGATGAAGAAAAAGAATT+TGG - chr2_4:47883156-47883175 Msa0331830:intron 20.0%
!! AGAAAATACTGAAAATTCTT+TGG - chr2_4:47883753-47883772 Msa0331830:intron 20.0%
!! TTAGATACAAAATTGCAATA+TGG + chr2_4:47884024-47884043 None:intergenic 20.0%
!!! TCTTTTATGTTGTTTTAGAT+TGG - chr2_4:47884049-47884068 Msa0331830:intron 20.0%
!!! TATCTCTTTCATTTTCTAAA+TGG - chr2_4:47884499-47884518 Msa0331830:intron 20.0%
!! AGAAATTTGATTCAGTAAAT+TGG - chr2_4:47884657-47884676 Msa0331830:CDS 20.0%
!!! CTTTTGTATTTTAACTTTCA+AGG - chr2_4:47884776-47884795 Msa0331830:CDS 20.0%
!!! ACGAATCAATTTTCAAATTT+CGG - chr2_4:47885078-47885097 Msa0331830:intron 20.0%
!! AACATTTAAAAGGTAATTAG+TGG + chr2_4:47885201-47885220 None:intergenic 20.0%
!!! TAAAACTAAAGCTTACATTT+TGG + chr2_4:47885349-47885368 None:intergenic 20.0%
!!! TGTAAGCTTTAGTTTTAATA+CGG - chr2_4:47885352-47885371 Msa0331830:intron 20.0%
!!! TCTCAATTTCTTATGTTTTA+TGG - chr2_4:47886032-47886051 Msa0331830:CDS 20.0%
!!! TTCTTATGTTTTATGGAAAA+TGG - chr2_4:47886039-47886058 Msa0331830:CDS 20.0%
!!! ATAATAAATTGATAATCACG+AGG + chr2_4:47886501-47886520 None:intergenic 20.0%
!! TTGTAATCATACTGAAATTA+GGG + chr2_4:47886573-47886592 None:intergenic 20.0%
!! TAAAAACCTTAAATAAATGC+AGG + chr2_4:47887229-47887248 None:intergenic 20.0%
! ATTGATTGAGAATTTCCATA+TGG + chr2_4:47881177-47881196 None:intergenic 25.0%
!!! TCTGATCTTTGTTTTATTAG+AGG + chr2_4:47881671-47881690 None:intergenic 25.0%
! AAATTGAGGCATAGATAAAA+CGG - chr2_4:47881897-47881916 Msa0331830:CDS 25.0%
! AATCAGGATAGCATATAATA+GGG - chr2_4:47882021-47882040 Msa0331830:intron 25.0%
! TTATCAGGATTTAAAGAAAC+AGG + chr2_4:47882083-47882102 None:intergenic 25.0%
! AAGGATAAACATTCGATAAA+TGG + chr2_4:47882155-47882174 None:intergenic 25.0%
! TTAAGATGGCAAAAAATTGA+AGG + chr2_4:47882174-47882193 None:intergenic 25.0%
!! TCTTTATTTCTTCAGTGAAT+AGG - chr2_4:47882343-47882362 Msa0331830:intron 25.0%
!! CTTTATTTCTTCAGTGAATA+GGG - chr2_4:47882344-47882363 Msa0331830:intron 25.0%
! TTTCTTAACAGAAAATTCCA+AGG + chr2_4:47882494-47882513 None:intergenic 25.0%
!! CTTTTATTCATATTCAACGA+AGG + chr2_4:47882565-47882584 None:intergenic 25.0%
! CTTCGTTGAATATGAATAAA+AGG - chr2_4:47882563-47882582 Msa0331830:intron 25.0%
! CTTCTCAATATTTCTCTTTA+TGG + chr2_4:47882704-47882723 None:intergenic 25.0%
! TCTGAAAAGAATATACTTGA+TGG - chr2_4:47882772-47882791 Msa0331830:intron 25.0%
! AAATGAGCTTGAATCAAAAA+AGG - chr2_4:47882801-47882820 Msa0331830:intron 25.0%
! AATGAGCTTGAATCAAAAAA+GGG - chr2_4:47882802-47882821 Msa0331830:intron 25.0%
!! TTGATTCAAATTCCTTTTGT+CGG + chr2_4:47882882-47882901 None:intergenic 25.0%
! GGAATTTGAATCAAAAGAAA+AGG - chr2_4:47882888-47882907 Msa0331830:intron 25.0%
!! CATTTCAACAACAACTTTTA+TGG - chr2_4:47883216-47883235 Msa0331830:CDS 25.0%
!! AATAGTCCTATTTGTAGTTT+TGG - chr2_4:47883295-47883314 Msa0331830:intron 25.0%
! TTATAGCCAAAACTACAAAT+AGG + chr2_4:47883304-47883323 None:intergenic 25.0%
! ACATAAGCAACAAAAATTGA+AGG + chr2_4:47883406-47883425 None:intergenic 25.0%
! CTTACACAAGATTTAATATC+TGG + chr2_4:47883688-47883707 None:intergenic 25.0%
! AAATACTGAAAATTCTTTGG+AGG - chr2_4:47883756-47883775 Msa0331830:intron 25.0%
!!! GATTGGCTTTAAATTTTAGT+TGG - chr2_4:47884066-47884085 Msa0331830:intron 25.0%
! TGTAGAACATATTATTTGTG+TGG - chr2_4:47884203-47884222 Msa0331830:intron 25.0%
!!! CATCTAAAAGTATTTGACTT+TGG + chr2_4:47884273-47884292 None:intergenic 25.0%
! ATGATAAGTAAAAACTATGC+AGG - chr2_4:47884290-47884309 Msa0331830:intron 25.0%
! AACAATTGACAAAACTGTTT+GGG + chr2_4:47884406-47884425 None:intergenic 25.0%
! TAACAATTGACAAAACTGTT+TGG + chr2_4:47884407-47884426 None:intergenic 25.0%
!!! CATTTAAACTTCTAGAATGT+AGG + chr2_4:47884588-47884607 None:intergenic 25.0%
! ATTTCTCAACAAAATTTGCA+AGG + chr2_4:47884629-47884648 None:intergenic 25.0%
!! AAAAACTTGTTCATTCTTGT+CGG + chr2_4:47884683-47884702 None:intergenic 25.0%
!! CATTTTCACATTCAACTTAA+AGG + chr2_4:47884869-47884888 None:intergenic 25.0%
! AAAGAAATAAGAGCTGATAT+GGG - chr2_4:47884941-47884960 Msa0331830:CDS 25.0%
!! TTTTCAAATTTCGGTTAAGT+TGG - chr2_4:47885087-47885106 Msa0331830:intron 25.0%
! TTCAATTTCGTATTAGTGAT+TGG - chr2_4:47885277-47885296 Msa0331830:intron 25.0%
! CTTATTCAATTTAGACCTTT+AGG - chr2_4:47885847-47885866 Msa0331830:CDS 25.0%
! TATGGAAAATGGATGTTTAT+TGG - chr2_4:47886050-47886069 Msa0331830:CDS 25.0%
!! AAATTTTCTTGGCAACATTA+GGG + chr2_4:47886107-47886126 None:intergenic 25.0%
! AGTCATATTCTATTATCTGA+GGG - chr2_4:47886269-47886288 Msa0331830:CDS 25.0%
! TCTTGATATGTTATTGTCAT+TGG + chr2_4:47886299-47886318 None:intergenic 25.0%
! GTTGTAATCATACTGAAATT+AGG + chr2_4:47886574-47886593 None:intergenic 25.0%
! AATTTCAGTATGATTACAAC+TGG - chr2_4:47886574-47886593 Msa0331830:five_prime_UTR 25.0%
!! TGATAAGGACATTTCATTTT+CGG - chr2_4:47887015-47887034 Msa0331830:five_prime_UTR 25.0%
! TTAATACTCATTTGTGTAGA+TGG - chr2_4:47887181-47887200 Msa0331830:five_prime_UTR 25.0%
! TAATACTCATTTGTGTAGAT+GGG - chr2_4:47887182-47887201 Msa0331830:five_prime_UTR 25.0%
!!! TTTTGAGTCCTTTTGTTTTT+GGG - chr2_4:47887281-47887300 Msa0331830:five_prime_UTR 25.0%
! AATTTATGATATGAAGGGTA+GGG + chr2_4:47887307-47887326 None:intergenic 25.0%
! AAATTTATGATATGAAGGGT+AGG + chr2_4:47887308-47887327 None:intergenic 25.0%
AAATCAGCAACATTATTCTG+TGG + chr2_4:47881306-47881325 None:intergenic 30.0%
TTCGTCAAGCAAGTAAATTT+GGG - chr2_4:47881469-47881488 Msa0331830:three_prime_UTR 30.0%
!!! CAGAGGTAGTCATATTTTTT+GGG - chr2_4:47881520-47881539 Msa0331830:three_prime_UTR 30.0%
TAAATGATCCAATGTAGAGT+AGG + chr2_4:47881551-47881570 None:intergenic 30.0%
TACTCTACATTGGATCATTT+AGG - chr2_4:47881550-47881569 Msa0331830:three_prime_UTR 30.0%
ACTCTACATTGGATCATTTA+GGG - chr2_4:47881551-47881570 Msa0331830:three_prime_UTR 30.0%
! TCATTTAGGGTTAGATTTGT+AGG - chr2_4:47881564-47881583 Msa0331830:three_prime_UTR 30.0%
!! GTGAAAGCGTAAAGTTTTTA+AGG - chr2_4:47881589-47881608 Msa0331830:three_prime_UTR 30.0%
GCAAAGAAAAAGATGATCTA+CGG - chr2_4:47881645-47881664 Msa0331830:intron 30.0%
CAAATGCAATTTACCGAAAT+AGG - chr2_4:47881761-47881780 Msa0331830:intron 30.0%
AATTTACCGAAATAGGTCTA+GGG - chr2_4:47881768-47881787 Msa0331830:intron 30.0%
TAAGAGAAAAAATCAAGTCG+TGG - chr2_4:47881806-47881825 Msa0331830:intron 30.0%
TTTCAAGGTTAAAGGTAGAA+CGG - chr2_4:47881837-47881856 Msa0331830:intron 30.0%
ATAAAAACCCTGTTATATGC+TGG + chr2_4:47881974-47881993 None:intergenic 30.0%
! TATAACAGGGTTTTTATCGA+TGG - chr2_4:47881977-47881996 Msa0331830:intron 30.0%
CAATCAGGATAGCATATAAT+AGG - chr2_4:47882020-47882039 Msa0331830:intron 30.0%
! TTTTGCCATCTTAATGCTTT+TGG - chr2_4:47882180-47882199 Msa0331830:intron 30.0%
! TTTGCCATCTTAATGCTTTT+GGG - chr2_4:47882181-47882200 Msa0331830:intron 30.0%
!! TATTCCCAAAAGCATTAAGA+TGG + chr2_4:47882188-47882207 None:intergenic 30.0%
!! TTAATGCTTTTGGGAATATG+TGG - chr2_4:47882190-47882209 Msa0331830:intron 30.0%
TTATGATAAACGGTACAACA+GGG + chr2_4:47882219-47882238 None:intergenic 30.0%
ATTATGATAAACGGTACAAC+AGG + chr2_4:47882220-47882239 None:intergenic 30.0%
TAATGCTTCTGTTTAGAAGA+TGG - chr2_4:47882405-47882424 Msa0331830:intron 30.0%
TTGAATATGAATAAAAGGCC+AGG - chr2_4:47882568-47882587 Msa0331830:intron 30.0%
AAATCATTTGAGGAATGCAA+CGG - chr2_4:47882646-47882665 Msa0331830:intron 30.0%
TCAAAAAAGGGTGAATTTGA+AGG - chr2_4:47882814-47882833 Msa0331830:intron 30.0%
TCAAAAGAGGAGGAATTTAA+AGG - chr2_4:47882940-47882959 Msa0331830:intron 30.0%
! CAATCTGATTCTCTTTTAAC+TGG + chr2_4:47883056-47883075 None:intergenic 30.0%
TCAGATTGAAGTACAAATCA+AGG - chr2_4:47883068-47883087 Msa0331830:intron 30.0%
! AAATTATTCAGCTTTGACTC+AGG + chr2_4:47883096-47883115 None:intergenic 30.0%
! GAGTCAAAGCTGAATAATTT+TGG - chr2_4:47883096-47883115 Msa0331830:intron 30.0%
! TCAAAGCTGAATAATTTTGG+TGG - chr2_4:47883099-47883118 Msa0331830:intron 30.0%
!! TAATTTTGGTGGACAACTAA+AGG - chr2_4:47883110-47883129 Msa0331830:intron 30.0%
TATGTGTGTGATATAGAAAC+TGG + chr2_4:47883276-47883295 None:intergenic 30.0%
CAAAAATTGAAGGTGACAAT+AGG + chr2_4:47883396-47883415 None:intergenic 30.0%
ATATGCAGATACATCTAACA+TGG - chr2_4:47883462-47883481 Msa0331830:intron 30.0%
! ATATCCAAAACAAGTTTTGC+TGG + chr2_4:47883565-47883584 None:intergenic 30.0%
!!! CTGATGATTTTGTCGATTTA+TGG - chr2_4:47883790-47883809 Msa0331830:intron 30.0%
TGTACAAATGTTCCTGAAAT+AGG - chr2_4:47884227-47884246 Msa0331830:intron 30.0%
GATATTAGATCTAGGTAACT+TGG - chr2_4:47884341-47884360 Msa0331830:intron 30.0%
CAAAATTGAACTCATGCAAT+TGG - chr2_4:47884366-47884385 Msa0331830:intron 30.0%
ACAATTGACAAAACTGTTTG+GGG + chr2_4:47884405-47884424 None:intergenic 30.0%
TTAAGAGAAAATTGACGTCT+TGG - chr2_4:47884424-47884443 Msa0331830:intron 30.0%
TAAGAGAAAATTGACGTCTT+GGG - chr2_4:47884425-47884444 Msa0331830:intron 30.0%
TATTGTTGAAACCTGCTAAT+AGG - chr2_4:47884717-47884736 Msa0331830:CDS 30.0%
!! TCTTATTTCTTTGAGATGGA+TGG + chr2_4:47884933-47884952 None:intergenic 30.0%
CAAAGAAATAAGAGCTGATA+TGG - chr2_4:47884940-47884959 Msa0331830:CDS 30.0%
TCAACTGATGTTGTAATCAA+TGG + chr2_4:47885020-47885039 None:intergenic 30.0%
!!! CTCTTATTTTATCCTCACTT+TGG + chr2_4:47885138-47885157 None:intergenic 30.0%
ATTGATATGATTCCATAGAC+TGG - chr2_4:47885445-47885464 Msa0331830:CDS 30.0%
! GCAACATTTCATTAGGTTTT+CGG - chr2_4:47885467-47885486 Msa0331830:CDS 30.0%
GACTTCGTAATCATTTCATA+TGG - chr2_4:47885675-47885694 Msa0331830:CDS 30.0%
! GAAATTTTCTTGGCAACATT+AGG + chr2_4:47886108-47886127 None:intergenic 30.0%
GTTGCCAAGAAAATTTCTTA+AGG - chr2_4:47886111-47886130 Msa0331830:CDS 30.0%
! TCCTCCTTAAGAAATTTTCT+TGG + chr2_4:47886118-47886137 None:intergenic 30.0%
! TCCATTCTACTTCCTATTTT+TGG - chr2_4:47886193-47886212 Msa0331830:intron 30.0%
!!! ATTCTACTTCCTATTTTTGG+CGG - chr2_4:47886196-47886215 Msa0331830:intron 30.0%
CAGTCATATTCTATTATCTG+AGG - chr2_4:47886268-47886287 Msa0331830:CDS 30.0%
GCTACAAAAATGAAAAACAG+TGG + chr2_4:47886345-47886364 None:intergenic 30.0%
!! TGTTTTTCATTTTTGTAGCG+TGG - chr2_4:47886346-47886365 Msa0331830:intron 30.0%
TTAAAAAGATGTCTTCCTCT+TGG - chr2_4:47886374-47886393 Msa0331830:intron 30.0%
! TTGATTCGTTGGTAAATTGT+TGG + chr2_4:47886658-47886677 None:intergenic 30.0%
AATTTACCAACGAATCAAGT+TGG - chr2_4:47886660-47886679 Msa0331830:five_prime_UTR 30.0%
GTCTTTCAACATTAGCTATT+AGG - chr2_4:47886767-47886786 Msa0331830:five_prime_UTR 30.0%
AACATTAGCTATTAGGAGTT+AGG - chr2_4:47886774-47886793 Msa0331830:five_prime_UTR 30.0%
!! CTAGTGCTGATTTGATTAAA+TGG - chr2_4:47886929-47886948 Msa0331830:five_prime_UTR 30.0%
!!! TGCAGTTTTTAGTTCTGATA+AGG - chr2_4:47887000-47887019 Msa0331830:five_prime_UTR 30.0%
TTTCAACATAGACTGAATAG+AGG - chr2_4:47887094-47887113 Msa0331830:five_prime_UTR 30.0%
AATACTCATTTGTGTAGATG+GGG - chr2_4:47887183-47887202 Msa0331830:five_prime_UTR 30.0%
TTTCTGCCTGCATTTATTTA+AGG - chr2_4:47887220-47887239 Msa0331830:five_prime_UTR 30.0%
!!! GTTTTGAGTCCTTTTGTTTT+TGG - chr2_4:47887280-47887299 Msa0331830:five_prime_UTR 30.0%
ATGCATATCTCATCACAAGT+TGG + chr2_4:47881370-47881389 None:intergenic 35.0%
ACTTGTGATGAGATATGCAT+CGG - chr2_4:47881370-47881389 Msa0331830:three_prime_UTR 35.0%
GGGATTCTTACTTCAACAAT+CGG - chr2_4:47881391-47881410 Msa0331830:three_prime_UTR 35.0%
! TACTTGCTTGACGAAGTTTT+TGG + chr2_4:47881464-47881483 None:intergenic 35.0%
CTTCGTCAAGCAAGTAAATT+TGG - chr2_4:47881468-47881487 Msa0331830:three_prime_UTR 35.0%
AATTGAAATTATGGCTCCAG+AGG - chr2_4:47881503-47881522 Msa0331830:three_prime_UTR 35.0%
CCAAAAAATATGACTACCTC+TGG + chr2_4:47881522-47881541 None:intergenic 35.0%
!!! CCAGAGGTAGTCATATTTTT+TGG - chr2_4:47881519-47881538 Msa0331830:three_prime_UTR 35.0%
!!! CTTTGCTTTGTTTTTTCCCT+GGG + chr2_4:47881631-47881650 None:intergenic 35.0%
!!! TCTTTGCTTTGTTTTTTCCC+TGG + chr2_4:47881632-47881651 None:intergenic 35.0%
CAATTTACCGAAATAGGTCT+AGG - chr2_4:47881767-47881786 Msa0331830:intron 35.0%
AACCACTGTTTCAAGGTTAA+AGG - chr2_4:47881829-47881848 Msa0331830:intron 35.0%
TACCTTTAACCTTGAAACAG+TGG + chr2_4:47881834-47881853 None:intergenic 35.0%
!! ATGTCAGGTTAGTTTCAATC+AGG - chr2_4:47882005-47882024 Msa0331830:intron 35.0%
AGTGCAAAAATCAAGGTTCA+TGG + chr2_4:47882057-47882076 None:intergenic 35.0%
CAGGATAAGTGCAAAAATCA+AGG + chr2_4:47882064-47882083 None:intergenic 35.0%
GAAGGAAGAAGTAGATCAAA+AGG - chr2_4:47882302-47882321 Msa0331830:intron 35.0%
CTGTCAAATAACCTCTTAAC+TGG + chr2_4:47882445-47882464 None:intergenic 35.0%
ATTTGACAGCAACAATTCCT+TGG - chr2_4:47882456-47882475 Msa0331830:intron 35.0%
! ATAATTCATTTTCCTCGCTG+AGG - chr2_4:47882602-47882621 Msa0331830:intron 35.0%
AATCATTTGAGGAATGCAAC+GGG - chr2_4:47882647-47882666 Msa0331830:intron 35.0%
GGAATCAACAAATAGAAGAG+TGG - chr2_4:47882668-47882687 Msa0331830:intron 35.0%
CTGCAAAGAGCTAGAAAATA+AGG - chr2_4:47882726-47882745 Msa0331830:intron 35.0%
AAATAAGGAGACCCAAGTTA+AGG - chr2_4:47882741-47882760 Msa0331830:intron 35.0%
AGACTCAAGTTCCTTAACTT+GGG + chr2_4:47882755-47882774 None:intergenic 35.0%
CTGATTCAAAGTTCTTCACT+AGG + chr2_4:47882840-47882859 None:intergenic 35.0%
!! GGATTTTGAAAGAAGAGTGA+AGG - chr2_4:47882909-47882928 Msa0331830:intron 35.0%
! TAAATTCCTCCTCTTTTGAC+TGG + chr2_4:47882939-47882958 None:intergenic 35.0%
!! AGTGAAAGTGTTTGAAGCAA+AGG - chr2_4:47882966-47882985 Msa0331830:intron 35.0%
CAATTCAGTATCACCATTGA+TGG - chr2_4:47883490-47883509 Msa0331830:intron 35.0%
!! AGATCCAGCAAAACTTGTTT+TGG - chr2_4:47883558-47883577 Msa0331830:intron 35.0%
!! GTTTTTCTAGCAGATAGATG+CGG + chr2_4:47883651-47883670 None:intergenic 35.0%
! GAAAATTCTTTGGAGGTTCT+CGG - chr2_4:47883763-47883782 Msa0331830:intron 35.0%
AGATAGCTGTAAAGCTGTTT+AGG - chr2_4:47883884-47883903 Msa0331830:intron 35.0%
GACTTTATGTACAAAACCCA+GGG + chr2_4:47883911-47883930 None:intergenic 35.0%
AGACTTTATGTACAAAACCC+AGG + chr2_4:47883912-47883931 None:intergenic 35.0%
!! GGTTTTGTACATAAAGTCTC+TGG - chr2_4:47883913-47883932 Msa0331830:intron 35.0%
AAATTCTTTCGTCAGTCATC+AGG - chr2_4:47883949-47883968 Msa0331830:intron 35.0%
AACAAGAGTTGTCCTATTTC+AGG + chr2_4:47884242-47884261 None:intergenic 35.0%
TCTCAACAAAATTTGCAAGG+TGG + chr2_4:47884626-47884645 None:intergenic 35.0%
AGTAGTCAAATCCTATTAGC+AGG + chr2_4:47884731-47884750 None:intergenic 35.0%
TAGGATTTGACTACTAATGC+TGG - chr2_4:47884736-47884755 Msa0331830:CDS 35.0%
! CAGCTCTTATTTCTTTGAGA+TGG + chr2_4:47884937-47884956 None:intergenic 35.0%
! ACTCTGAAAGGAAGGTATAT+AGG + chr2_4:47885242-47885261 None:intergenic 35.0%
AAATTGAACTCTCCAATCAC+AGG + chr2_4:47885265-47885284 None:intergenic 35.0%
TTCGTATTAGTGATTGGAGT+TGG - chr2_4:47885283-47885302 Msa0331830:intron 35.0%
AATGAAATGTTGCCAGTCTA+TGG + chr2_4:47885460-47885479 None:intergenic 35.0%
TAGACTGGCAACATTTCATT+AGG - chr2_4:47885460-47885479 Msa0331830:CDS 35.0%
TCTTATCTTGCATTTGCAAG+AGG - chr2_4:47885630-47885649 Msa0331830:CDS 35.0%
ATGAAATGATTACGAAGTCG+AGG + chr2_4:47885674-47885693 None:intergenic 35.0%
GTATCATATTCGAAGTCTGA+AGG + chr2_4:47885731-47885750 None:intergenic 35.0%
ATAAACACCAGTTTCATGTG+TGG - chr2_4:47885781-47885800 Msa0331830:CDS 35.0%
TAAACACCAGTTTCATGTGT+GGG - chr2_4:47885782-47885801 Msa0331830:CDS 35.0%
AGTCCATAATCCACATTCTA+CGG + chr2_4:47885820-47885839 None:intergenic 35.0%
TTTAGACCTTTAGGTCTTGA+AGG - chr2_4:47885856-47885875 Msa0331830:CDS 35.0%
ATGCATACAAAGATAGCACA+TGG + chr2_4:47885908-47885927 None:intergenic 35.0%
!!! ATGAGTTTTGAACAAGAACC+TGG - chr2_4:47885957-47885976 Msa0331830:CDS 35.0%
!!! TGAGTTTTGAACAAGAACCT+GGG - chr2_4:47885958-47885977 Msa0331830:CDS 35.0%
!!! GTTTTTTGCATGCTGTTTCA+GGG - chr2_4:47885980-47885999 Msa0331830:CDS 35.0%
GCCAAGAAAATTTCTTAAGG+AGG - chr2_4:47886114-47886133 Msa0331830:CDS 35.0%
GCCAAAAATAGGAAGTAGAA+TGG + chr2_4:47886197-47886216 None:intergenic 35.0%
!!! TTCTACTTCCTATTTTTGGC+GGG - chr2_4:47886197-47886216 Msa0331830:intron 35.0%
GTTATCTGTATTAACGCACA+TGG - chr2_4:47886522-47886541 Msa0331830:intron 35.0%
TAGTAAGTTGCTTCAAACGA+TGG - chr2_4:47886605-47886624 Msa0331830:five_prime_UTR 35.0%
! AAGGCTTTTAAATGCTAACC+TGG + chr2_4:47886700-47886719 None:intergenic 35.0%
AGGTTAGCATTTAAAAGCCT+TGG - chr2_4:47886699-47886718 Msa0331830:five_prime_UTR 35.0%
GATAGGGATAATGATCATGT+AGG + chr2_4:47886855-47886874 None:intergenic 35.0%
GTAGCAACTTCACTAGAATT+TGG + chr2_4:47886961-47886980 None:intergenic 35.0%
ACTCTAAGCTGCTATTCAAT+TGG - chr2_4:47887143-47887162 Msa0331830:five_prime_UTR 35.0%
AGCTGCTATTCAATTGGTTA+AGG - chr2_4:47887149-47887168 Msa0331830:five_prime_UTR 35.0%
!! AGATCGCACTGATTGAACAA+TGG - chr2_4:47881200-47881219 Msa0331830:three_prime_UTR 40.0%
! CTGATTTGCAGCAATCACAT+AGG - chr2_4:47881319-47881338 Msa0331830:three_prime_UTR 40.0%
CTTGTGATGAGATATGCATC+GGG - chr2_4:47881371-47881390 Msa0331830:three_prime_UTR 40.0%
!! CTTGACGAAGTTTTTGGAAG+GGG + chr2_4:47881458-47881477 None:intergenic 40.0%
!! GCTTGACGAAGTTTTTGGAA+GGG + chr2_4:47881459-47881478 None:intergenic 40.0%
!! TGCTTGACGAAGTTTTTGGA+AGG + chr2_4:47881460-47881479 None:intergenic 40.0%
TGATCCAATGTAGAGTAGGT+AGG + chr2_4:47881547-47881566 None:intergenic 40.0%
CTCTGATTCAGTTTCGAAGA+GGG + chr2_4:47881865-47881884 None:intergenic 40.0%
TCTCGAGTTTCAGATCAATC+AGG - chr2_4:47881940-47881959 Msa0331830:CDS 40.0%
ACAGTGTTCCAGCATATAAC+AGG - chr2_4:47881963-47881982 Msa0331830:intron 40.0%
CAGTGTTCCAGCATATAACA+GGG - chr2_4:47881964-47881983 Msa0331830:intron 40.0%
TTGGATTTAACAGCACGAAC+TGG - chr2_4:47882258-47882277 Msa0331830:intron 40.0%
!! CAAGGAATTGTTGCTTTCCA+AGG + chr2_4:47882476-47882495 None:intergenic 40.0%
CTTGGAAAGCAACAATTCCT+TGG - chr2_4:47882474-47882493 Msa0331830:CDS 40.0%
!! GAATTATCAGCTGATTTGCC+TGG + chr2_4:47882589-47882608 None:intergenic 40.0%
AAATAGAAGAGTGGCGATTG+TGG - chr2_4:47882677-47882696 Msa0331830:intron 40.0%
CAGACTCAAGTTCCTTAACT+TGG + chr2_4:47882756-47882775 None:intergenic 40.0%
! AGTGTTTGAAGCAAAGGAAG+AGG - chr2_4:47882972-47882991 Msa0331830:intron 40.0%
GCAATTTGAAAACCAAGCTG+AGG - chr2_4:47883014-47883033 Msa0331830:intron 40.0%
!!! ACTGGACTAGCTTTTCAACT+TGG + chr2_4:47883258-47883277 None:intergenic 40.0%
TTCCTCACTTGTTCCATCAA+TGG + chr2_4:47883506-47883525 None:intergenic 40.0%
GATGGAACAAGTGAGGAATT+TGG - chr2_4:47883508-47883527 Msa0331830:intron 40.0%
ACGTCTTGGGTGTTAATGTT+TGG - chr2_4:47884438-47884457 Msa0331830:intron 40.0%
! TTTGAGATGGATGGTAAGAG+TGG + chr2_4:47884924-47884943 None:intergenic 40.0%
!! GCTGATATGGGTATTGAGAT+TGG - chr2_4:47884953-47884972 Msa0331830:CDS 40.0%
! TAGCTTTTCTCTCCAAAGTG+AGG - chr2_4:47885123-47885142 Msa0331830:intron 40.0%
ATTAGTGATTGGAGTTGGAG+AGG - chr2_4:47885288-47885307 Msa0331830:intron 40.0%
ACAATACTTGTGCGTGATTC+GGG + chr2_4:47885324-47885343 None:intergenic 40.0%
GACAATACTTGTGCGTGATT+CGG + chr2_4:47885325-47885344 None:intergenic 40.0%
TGTATGATAAGGCTCATGCA+CGG - chr2_4:47885520-47885539 Msa0331830:CDS 40.0%
GTGAGTCTTGACACAACAAA+TGG + chr2_4:47885709-47885728 None:intergenic 40.0%
TCCATAATCCACATTCTACG+GGG + chr2_4:47885818-47885837 None:intergenic 40.0%
GTCCATAATCCACATTCTAC+GGG + chr2_4:47885819-47885838 None:intergenic 40.0%
GCACATGGAGAACATAAACT+TGG + chr2_4:47885893-47885912 None:intergenic 40.0%
GTGCTATCTTTGTATGCATG+AGG - chr2_4:47885909-47885928 Msa0331830:CDS 40.0%
AAACAGCATGCAAAAAACCC+AGG + chr2_4:47885978-47885997 None:intergenic 40.0%
!!! GGTTTTTTGCATGCTGTTTC+AGG - chr2_4:47885979-47885998 Msa0331830:CDS 40.0%
AGTAGAATGGATGTCAGACA+TGG + chr2_4:47886184-47886203 None:intergenic 40.0%
!!! TCTACTTCCTATTTTTGGCG+GGG - chr2_4:47886198-47886217 Msa0331830:intron 40.0%
TCATTATCCCCGCCAAAAAT+AGG + chr2_4:47886208-47886227 None:intergenic 40.0%
AAGAACTCGCTAAAGTCATC+TGG + chr2_4:47886239-47886258 None:intergenic 40.0%
AAGAGGGATTGCATCATCTT+TGG - chr2_4:47886405-47886424 Msa0331830:intron 40.0%
TTGGTAAATTGTTGGCCACA+GGG + chr2_4:47886650-47886669 None:intergenic 40.0%
TAAATGCTAACCTGGATCAG+AGG + chr2_4:47886692-47886711 None:intergenic 40.0%
AGCATTTAAAAGCCTTGGCA+TGG - chr2_4:47886704-47886723 Msa0331830:five_prime_UTR 40.0%
! GGAATACTTTTACCATGCCA+AGG + chr2_4:47886719-47886738 None:intergenic 40.0%
AACTGAGAGTCAGATACTCT+CGG + chr2_4:47886740-47886759 None:intergenic 40.0%
GCAACTTCACTAGAATTTGG+AGG + chr2_4:47886958-47886977 None:intergenic 40.0%
! AGTTTTGCAAGCAGAACTGT+GGG - chr2_4:47887058-47887077 Msa0331830:five_prime_UTR 40.0%
GGACGTGTTAGAAACTCATA+GGG + chr2_4:47887364-47887383 None:intergenic 40.0%
AGGACGTGTTAGAAACTCAT+AGG + chr2_4:47887365-47887384 None:intergenic 40.0%
AGTTTCTAACACGTCCTATC+TGG - chr2_4:47887368-47887387 Msa0331830:five_prime_UTR 40.0%
TGCCTCATAAACTGTTGCTG+CGG + chr2_4:47881240-47881259 None:intergenic 45.0%
GCAACAGTTTATGAGGCAAC+AGG - chr2_4:47881242-47881261 Msa0331830:three_prime_UTR 45.0%
CATCTGAGTGTGTTCCATGT+CGG + chr2_4:47881277-47881296 None:intergenic 45.0%
ATGGAACACACTCAGATGCT+TGG - chr2_4:47881279-47881298 Msa0331830:three_prime_UTR 45.0%
TGGAACACACTCAGATGCTT+GGG - chr2_4:47881280-47881299 Msa0331830:three_prime_UTR 45.0%
! TACCGAAATAGGTCTAGGGT+TGG - chr2_4:47881772-47881791 Msa0331830:intron 45.0%
GTCCAACCCTAGACCTATTT+CGG + chr2_4:47881777-47881796 None:intergenic 45.0%
! AAATAGGTCTAGGGTTGGAC+AGG - chr2_4:47881777-47881796 Msa0331830:intron 45.0%
CCTCTGATTCAGTTTCGAAG+AGG + chr2_4:47881866-47881885 None:intergenic 45.0%
CCTCTTCGAAACTGAATCAG+AGG - chr2_4:47881863-47881882 Msa0331830:CDS 45.0%
CTTCGAAACTGAATCAGAGG+CGG - chr2_4:47881866-47881885 Msa0331830:CDS 45.0%
TTCGAAACTGAATCAGAGGC+GGG - chr2_4:47881867-47881886 Msa0331830:CDS 45.0%
! TGATCTGAAACTCGAGACTG+TGG + chr2_4:47881937-47881956 None:intergenic 45.0%
GAAGGAGTTCCAGTCAAAAG+AGG - chr2_4:47882927-47882946 Msa0331830:intron 45.0%
GCAAAGGAAGAGGAATTCGA+AGG - chr2_4:47882982-47883001 Msa0331830:intron 45.0%
!! CTTTGAGATTGTCCTCAGCT+TGG + chr2_4:47883029-47883048 None:intergenic 45.0%
CACCATTGATGGAACAAGTG+AGG - chr2_4:47883501-47883520 Msa0331830:intron 45.0%
TTCTTAGGCAGTGGAATCGT+GGG + chr2_4:47883598-47883617 None:intergenic 45.0%
ACGATTCCACTGCCTAAGAA+GGG - chr2_4:47883598-47883617 Msa0331830:intron 45.0%
! ACAGCTTTGTCTCCCTTCTT+AGG + chr2_4:47883613-47883632 None:intergenic 45.0%
! TGTAAAGCTGTTTAGGACCC+TGG - chr2_4:47883891-47883910 Msa0331830:intron 45.0%
! GTAAAGCTGTTTAGGACCCT+GGG - chr2_4:47883892-47883911 Msa0331830:intron 45.0%
! ATCACAGGACTCTGAAAGGA+AGG + chr2_4:47885250-47885269 None:intergenic 45.0%
TCCTTTCAGAGTCCTGTGAT+TGG - chr2_4:47885250-47885269 Msa0331830:intron 45.0%
TCCAATCACAGGACTCTGAA+AGG + chr2_4:47885254-47885273 None:intergenic 45.0%
GTACTATAAAGCTCCCCTCA+TGG - chr2_4:47885569-47885588 Msa0331830:CDS 45.0%
TAGATTCACAACAGAGCTCC+CGG + chr2_4:47885601-47885620 None:intergenic 45.0%
CGAAGTCGAGGTTTGATTAG+TGG + chr2_4:47885662-47885681 None:intergenic 45.0%
ACAATGCCCACACATGAAAC+TGG + chr2_4:47885791-47885810 None:intergenic 45.0%
! TCCCCGTAGAATGTGGATTA+TGG - chr2_4:47885814-47885833 Msa0331830:CDS 45.0%
AGACCTTTAGGTCTTGAAGG+AGG - chr2_4:47885859-47885878 Msa0331830:CDS 45.0%
TCTCCTCCTTCAAGACCTAA+AGG + chr2_4:47885865-47885884 None:intergenic 45.0%
TTGTATGCATGAGGCGTGTT+TGG - chr2_4:47885918-47885937 Msa0331830:CDS 45.0%
! CTGTTTCAGGGTTGTGGTTT+TGG - chr2_4:47885992-47886011 Msa0331830:CDS 45.0%
AGATGTCTTCCTCTTGGTTG+TGG - chr2_4:47886380-47886399 Msa0331830:intron 45.0%
! ATCTTTGGAAGATTGCCCTG+CGG - chr2_4:47886420-47886439 Msa0331830:intron 45.0%
CATCTTCTCTTCAAACCGCA+GGG + chr2_4:47886438-47886457 None:intergenic 45.0%
ACATCTTCTCTTCAAACCGC+AGG + chr2_4:47886439-47886458 None:intergenic 45.0%
GTTTACAGCTGCAACAAGTC+AGG - chr2_4:47886457-47886476 Msa0331830:intron 45.0%
TTCAAACGATGGCTAGACAC+CGG - chr2_4:47886616-47886635 Msa0331830:five_prime_UTR 45.0%
! GTTGGTAAATTGTTGGCCAC+AGG + chr2_4:47886651-47886670 None:intergenic 45.0%
! CAGTTTTGCAAGCAGAACTG+TGG - chr2_4:47887057-47887076 Msa0331830:five_prime_UTR 45.0%
! GTTTTGCAAGCAGAACTGTG+GGG - chr2_4:47887059-47887078 Msa0331830:five_prime_UTR 45.0%
! TTTTGCAAGCAGAACTGTGG+GGG - chr2_4:47887060-47887079 Msa0331830:five_prime_UTR 45.0%
AGCCGCAGCAACAGTTTATG+AGG - chr2_4:47881235-47881254 Msa0331830:three_prime_UTR 50.0%
ACAGGCAAATGCAACCGACA+TGG - chr2_4:47881260-47881279 Msa0331830:three_prime_UTR 50.0%
GGGTCCTACCTACTCTACAT+TGG - chr2_4:47881540-47881559 Msa0331830:three_prime_UTR 50.0%
TCGATGTTGAGTCAGTCCCA+GGG - chr2_4:47881612-47881631 Msa0331830:three_prime_UTR 50.0%
GTCGTGGAACCACTGTTTCA+AGG - chr2_4:47881822-47881841 Msa0331830:intron 50.0%
CTGAAACTCGAGACTGTGGT+TGG + chr2_4:47881933-47881952 None:intergenic 50.0%
TTATCGATGGCGACGATGTC+AGG - chr2_4:47881990-47882009 Msa0331830:intron 50.0%
CTACTGCACTGCCAGTTAAG+AGG - chr2_4:47882431-47882450 Msa0331830:intron 50.0%
TGCAAGTTCTTTCCTCAGCG+AGG + chr2_4:47882617-47882636 None:intergenic 50.0%
ACATTTCGCGAGCCGACAAA+AGG - chr2_4:47882867-47882886 Msa0331830:intron 50.0%
GGAGTTCCAGTCAAAAGAGG+AGG - chr2_4:47882930-47882949 Msa0331830:intron 50.0%
TCTTAGGCAGTGGAATCGTG+GGG + chr2_4:47883597-47883616 None:intergenic 50.0%
CTTCTTAGGCAGTGGAATCG+TGG + chr2_4:47883599-47883618 None:intergenic 50.0%
CACGATTCCACTGCCTAAGA+AGG - chr2_4:47883597-47883616 Msa0331830:intron 50.0%
TTGTCTCCCTTCTTAGGCAG+TGG + chr2_4:47883607-47883626 None:intergenic 50.0%
TTGTGTGTCCCCGTAGAATG+TGG - chr2_4:47885807-47885826 Msa0331830:CDS 50.0%
ATGCATGAGGCGTGTTTGGT+TGG - chr2_4:47885922-47885941 Msa0331830:CDS 50.0%
!! TGCATGCTGTTTCAGGGTTG+TGG - chr2_4:47885986-47886005 Msa0331830:CDS 50.0%
TCCTCTTGGTTGTGGTGAAG+AGG - chr2_4:47886388-47886407 Msa0331830:intron 50.0%
CCTCTTGGTTGTGGTGAAGA+GGG - chr2_4:47886389-47886408 Msa0331830:intron 50.0%
TCAAACGATGGCTAGACACC+GGG - chr2_4:47886617-47886636 Msa0331830:five_prime_UTR 50.0%
! CTAGGGCCAACTTGATTCGT+TGG + chr2_4:47886669-47886688 None:intergenic 50.0%
CTAACCTGGATCAGAGGCTA+GGG + chr2_4:47886686-47886705 None:intergenic 50.0%
GAACTGTGGGGGATTTGACA+TGG - chr2_4:47887071-47887090 Msa0331830:five_prime_UTR 50.0%
GGGTAGGGCCCAAAAACAAA+AGG + chr2_4:47887292-47887311 None:intergenic 50.0%
GTCGATGTTGAGTCAGTCCC+AGG - chr2_4:47881611-47881630 Msa0331830:three_prime_UTR 55.0%
AAACTGAATCAGAGGCGGGC+AGG - chr2_4:47881871-47881890 Msa0331830:CDS 55.0%
AGGCGGGCAGGTCAAAATTG+AGG - chr2_4:47881883-47881902 Msa0331830:CDS 55.0%
CACGAACTGGACAGCCAAGT+GGG - chr2_4:47882271-47882290 Msa0331830:intron 55.0%
ACGAACTGGACAGCCAAGTG+GGG - chr2_4:47882272-47882291 Msa0331830:intron 55.0%
TCCTTCCAATCACCCCCACT+TGG + chr2_4:47882288-47882307 None:intergenic 55.0%
CCCTCTTCACCACAACCAAG+AGG + chr2_4:47886392-47886411 None:intergenic 55.0%
AATTGTTGGCCACAGGGTCC+TGG + chr2_4:47886644-47886663 None:intergenic 55.0%
GCTAACCTGGATCAGAGGCT+AGG + chr2_4:47886687-47886706 None:intergenic 55.0%
GCACGAACTGGACAGCCAAG+TGG - chr2_4:47882270-47882289 Msa0331830:intron 60.0%
CGAACTGGACAGCCAAGTGG+GGG - chr2_4:47882273-47882292 Msa0331830:intron 60.0%
GACAGCCAAGTGGGGGTGAT+TGG - chr2_4:47882280-47882299 Msa0331830:intron 60.0%
GCCAAGTGGGGGTGATTGGA+AGG - chr2_4:47882284-47882303 Msa0331830:intron 60.0%
GCTCCCCTCATGGCAAGTAC+CGG - chr2_4:47885579-47885598 Msa0331830:CDS 60.0%
CTCCCCTCATGGCAAGTACC+GGG - chr2_4:47885580-47885599 Msa0331830:CDS 60.0%
CTCCCGGTACTTGCCATGAG+GGG + chr2_4:47885585-47885604 None:intergenic 60.0%
GCTCCCGGTACTTGCCATGA+GGG + chr2_4:47885586-47885605 None:intergenic 60.0%
AGCTCCCGGTACTTGCCATG+AGG + chr2_4:47885587-47885606 None:intergenic 60.0%
TTGGCCCTAGCCTCTGATCC+AGG - chr2_4:47886679-47886698 Msa0331830:five_prime_UTR 60.0%
GATGGCTAGACACCGGGTCC+AGG - chr2_4:47886623-47886642 Msa0331830:five_prime_UTR 65.0%
ACACCGGGTCCAGGACCCTG+TGG - chr2_4:47886632-47886651 Msa0331830:five_prime_UTR 70.0%
TGGCCACAGGGTCCTGGACC+CGG + chr2_4:47886638-47886657 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 47881164 47887391 47881164 ID=Msa0331830;Name=Msa0331830
chr2_4 mRNA 47881164 47887391 47881164 ID=Msa0331830-mRNA-1;Parent=Msa0331830;Name=Msa0331830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=832|0.75|0.88|0.88|0.87|0.88|9|487|570
chr2_4 exon 47881164 47881645 47881164 ID=Msa0331830-mRNA-1:exon:14417;Parent=Msa0331830-mRNA-1
chr2_4 exon 47881855 47881973 47881855 ID=Msa0331830-mRNA-1:exon:14416;Parent=Msa0331830-mRNA-1
chr2_4 exon 47882077 47882191 47882077 ID=Msa0331830-mRNA-1:exon:14415;Parent=Msa0331830-mRNA-1
chr2_4 exon 47882474 47882554 47882474 ID=Msa0331830-mRNA-1:exon:14414;Parent=Msa0331830-mRNA-1
chr2_4 exon 47883203 47883296 47883203 ID=Msa0331830-mRNA-1:exon:14413;Parent=Msa0331830-mRNA-1
chr2_4 exon 47884621 47885085 47884621 ID=Msa0331830-mRNA-1:exon:14412;Parent=Msa0331830-mRNA-1
chr2_4 exon 47885378 47886134 47885378 ID=Msa0331830-mRNA-1:exon:14411;Parent=Msa0331830-mRNA-1
chr2_4 exon 47886232 47886302 47886232 ID=Msa0331830-mRNA-1:exon:14410;Parent=Msa0331830-mRNA-1
chr2_4 exon 47886544 47887391 47886544 ID=Msa0331830-mRNA-1:exon:14409;Parent=Msa0331830-mRNA-1
chr2_4 five_prime_UTR 47886560 47887391 47886560 ID=Msa0331830-mRNA-1:five_prime_utr;Parent=Msa0331830-mRNA-1
chr2_4 CDS 47886544 47886559 47886544 ID=Msa0331830-mRNA-1:cds;Parent=Msa0331830-mRNA-1
chr2_4 CDS 47886232 47886302 47886232 ID=Msa0331830-mRNA-1:cds;Parent=Msa0331830-mRNA-1
chr2_4 CDS 47885378 47886134 47885378 ID=Msa0331830-mRNA-1:cds;Parent=Msa0331830-mRNA-1
chr2_4 CDS 47884621 47885085 47884621 ID=Msa0331830-mRNA-1:cds;Parent=Msa0331830-mRNA-1
chr2_4 CDS 47883203 47883296 47883203 ID=Msa0331830-mRNA-1:cds;Parent=Msa0331830-mRNA-1
chr2_4 CDS 47882474 47882554 47882474 ID=Msa0331830-mRNA-1:cds;Parent=Msa0331830-mRNA-1
chr2_4 CDS 47882077 47882191 47882077 ID=Msa0331830-mRNA-1:cds;Parent=Msa0331830-mRNA-1
chr2_4 CDS 47881860 47881973 47881860 ID=Msa0331830-mRNA-1:cds;Parent=Msa0331830-mRNA-1
chr2_4 three_prime_UTR 47881855 47881859 47881855 ID=Msa0331830-mRNA-1:three_prime_utr;Parent=Msa0331830-mRNA-1
chr2_4 three_prime_UTR 47881164 47881645 47881164 ID=Msa0331830-mRNA-1:three_prime_utr;Parent=Msa0331830-mRNA-1
Gene Sequence

>Msa0331830

ATGGCGACGATGTCAGGTTCTTTGGATTTAACAGCACGAACTGGACAGCCAAGTGGGGGTGATTGGAAGGAAGAAGTAGATCAAAAGAAGATGGATACTACTGCACTGCCAGTTAAGAGGTTATTTGACAGCAACAATTCCTTGGAAAGCAACAATTCCTTGGAATTTTCTGTTAAGAAATCAAAGGTGTCACTATATGATGATCGTGACAAAGATGAAGACGATATTCCTTCGTTGAATATGAATAAAAGGCCAGGCAAATCAGCTGATAATTCATTTTCCTCGCTGAGGAAAGAACTTGCATTGTTGAAAAAATCATTTGAGGAATGCAACGGGAATCAACAAATAGAAGAGTGGCGATTGTGGTCCATAAAGAGAAATATTGAGAAGTGCTGCAAAGAGCTAGAAAATAAGGAGACCCAAGTTAAGGAACTTGAGTCTGAAAAGAATATACTTGATGGTCGAGTAAATGAGCTTGAATCAAAAAAGGGTGAATTTGAAGGCCTAGTGAAGAACTTTGAATCAGAAAAGACACATTTCGCGAGCCGACAAAAGGAATTTGAATCAAAAGAAAAGGATTTTGAAAGAAGAGTGAAGGAGTTCCAGTCAAAAGAGGAGGAATTTAAAGGTCGAGTGAAAGTGTTTGAAGCAAAGGAAGAGGAATTCGAAGGAAAAATGCAGCAATTTGAAAACCAAGCTGAGGACAATCTCAAAGCACTCCAGTTAAAAGAGAATCAGATTGAAGTACAAATCAAGGATCCTGAGTCAAAGCTGAATAATTTTGGTGGACAACTAAAGGAGCTTGAGTTGACAGAGAAACAATATGATGAAGAAAAAGAATTTGATACATCTAACATGGATGATCAATTCAGTATCACCATTGATGGAACAAGTGAGGAATTTGGCATTCTAGATAATTTGCGAAAATCATCAGATCCAGCAAAACTTGTTTTGGATATAATACTAAACCCCACGATTCCACTGCCTAAGAAGGGAGACAAAGCTGTGATTATTGATGAAAGCCGCATCTATCTGCTAGAAAAACTGATGATAATCTCACCAGATATTAAATCTTGTGTAAGAGATGAAGCTTTGAAGCTAGCACGTGAATTGAAAGCTAACATGAAAGAAAATACTGAAAATTCTTTGGAGGTTCTCGGATTTCTGATGATTTTGTCGATTTATGGATTGCTTACTTACTTTGATGAAGATGAAGTCTTCAAGCTTTTTGCTTCTGTTGCGTCTGTTGCTGAATACAAGATAGCTGTAAAGCTGTTTAGGACCCTGGGTTTTGTACATAAAGTCTCTGAGTCCTGTGATTGGAGAGTTCAATTTCGTATTAGTGATTGGAGTTGGAGAGGTCAATTGTCACCCGAATCACGCACAAGTATTGTCTCCAAAATGGTTGTGGTTTTGGCTCTTATGTCACATTCTTCTCAATTTCTTATGTTTTATGGAAAATGGATGTTTATTGGAAAACTAAACGTGGAGATATTAAAAAGATGTCTTCCTCTTGGTTGTGGTGAAGAGGGATTGCATCATCTTTGGAAGATTGCCCTGCGGTTTGAAGAGAAGATGTTTACAGCTGCAACAAGTCAGTATGATTACAACTGGAAAATAGCTAGTAAGTTGCTTCAAACGATGGCTAGACACCGGGTCCAGGACCCTGTGGCCAACAATTTACCAACGAATCAAGTTGGCCCTAGCCTCTGA
Protein sequence

>Msa0331830

MATMSGSLDLTARTGQPSGGDWKEEVDQKKMDTTALPVKRLFDSNNSLESNNSLEFSVKKSKVSLYDDRDKDEDDIPSLNMNKRPGKSADNSFSSLRKELALLKKSFEECNGNQQIEEWRLWSIKRNIEKCCKELENKETQVKELESEKNILDGRVNELESKKGEFEGLVKNFESEKTHFASRQKEFESKEKDFERRVKEFQSKEEEFKGRVKVFEAKEEEFEGKMQQFENQAEDNLKALQLKENQIEVQIKDPESKLNNFGGQLKELELTEKQYDEEKEFDTSNMDDQFSITIDGTSEEFGILDNLRKSSDPAKLVLDIILNPTIPLPKKGDKAVIIDESRIYLLEKLMIISPDIKSCVRDEALKLARELKANMKENTENSLEVLGFLMILSIYGLLTYFDEDEVFKLFASVASVAEYKIAVKLFRTLGFVHKVSESCDWRVQFRISDWSWRGQLSPESRTSIVSKMVVVLALMSHSSQFLMFYGKWMFIGKLNVEILKRCLPLGCGEEGLHHLWKIALRFEEKMFTAATSQYDYNWKIASKLLQTMARHRVQDPVANNLPTNQVGPSL*