AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0635470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0635470 MtrunA17_Chr4g0017941 98.403 313 3 2 1 312 1 312 0.0 629
Msa0635470 MtrunA17_Chr1g0178361 61.409 298 101 4 18 312 19 305 1.32e-118 343
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0635470 AT5G61670.2 84.532 278 36 1 35 312 37 307 1.37e-171 478
Msa0635470 AT5G61670.1 84.532 278 36 1 35 312 37 307 1.37e-171 478
Msa0635470 AT5G06130.2 63.309 278 97 2 40 312 38 315 5.09e-124 358
Msa0635470 AT5G06130.1 67.532 231 74 1 83 312 1 231 2.00e-114 330

Find 92 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAATCTTGTACAGTTTC+AGG 0.123968 4_3:+24222416 None:intergenic
GAGAATGGACACAAGAAATT+AGG 0.160765 4_3:-24218111 Msa0635470:three_prime_UTR
TAAAATAGATATATTGCTTT+TGG 0.220771 4_3:+24222903 None:intergenic
GGAATGAATGATGGGAAATT+AGG 0.261986 4_3:+24220932 None:intergenic
TATCCATCTCTCTGGGAATA+TGG 0.267448 4_3:+24218241 None:intergenic
CATTCCATTCTTGCCTCCTT+TGG 0.293420 4_3:-24220915 Msa0635470:intron
GATGGAACTTCAAGAAATTC+AGG 0.311738 4_3:-24222390 Msa0635470:CDS
ATGTTTCTGTTGTGGAATAA+TGG 0.331491 4_3:-24218337 Msa0635470:three_prime_UTR
TGGTGTAATCTCTGCATTAA+TGG 0.340651 4_3:-24219648 Msa0635470:CDS
TAAAGGAAACCATTCTGTTC+CGG 0.343976 4_3:+24218185 None:intergenic
ATTTAGATGAATGAATCTTT+TGG 0.346573 4_3:+24222663 None:intergenic
AAGAAATTCAGGATAATATT+CGG 0.347874 4_3:-24222379 Msa0635470:CDS
TTCGCTTGCCATAGCCATTC+CGG 0.349664 4_3:+24218453 None:intergenic
CCTATTGTGGCATCATTCTC+TGG 0.350969 4_3:-24219680 Msa0635470:CDS
ATTGAGGTAGTTGTTGTTGA+TGG 0.351148 4_3:+24222800 None:intergenic
AGAATGGACACAAGAAATTA+GGG 0.372630 4_3:-24218110 Msa0635470:three_prime_UTR
AAAGAAGAAGATGTTGTGTT+TGG 0.384172 4_3:-24222728 Msa0635470:exon
AAAGGAAACCATTCTGTTCC+GGG 0.388543 4_3:+24218186 None:intergenic
GAGAATGGAGGATGTGAAAA+TGG 0.405969 4_3:+24222830 None:intergenic
TGATTACTATTCTACAAAAC+AGG 0.407544 4_3:-24218084 Msa0635470:three_prime_UTR
TGTTCAAATTGCTCCGGATC+TGG 0.412046 4_3:-24219201 Msa0635470:CDS
CGCAGGTTCTGTATTATAGA+AGG 0.413449 4_3:-24222440 Msa0635470:intron
TGAAAATGGACTGCACAAAT+TGG 0.414056 4_3:+24222844 None:intergenic
CTTACCAAAGGAGGCAAGAA+TGG 0.419900 4_3:+24220911 None:intergenic
AGGTATCTTATCCATCTCTC+TGG 0.430753 4_3:+24218233 None:intergenic
GTTGATGGAAAGTTTGAGAA+TGG 0.434465 4_3:+24222815 None:intergenic
ATGTTGTGTTTGGGTGTAGT+TGG 0.439515 4_3:-24222718 Msa0635470:CDS
CCAGAGAATGATGCCACAAT+AGG 0.441935 4_3:+24219680 None:intergenic
TCATTCTCTGGTGGAGCTGT+TGG 0.444757 4_3:-24219668 Msa0635470:CDS
GAGATAAAGATTGAAAGATC+TGG 0.445570 4_3:-24218270 Msa0635470:three_prime_UTR
TGCAAATACTGTCTTGGTAC+TGG 0.456169 4_3:-24219584 Msa0635470:intron
AGGCTGATCTCCACCATTGA+AGG 0.461185 4_3:+24219248 None:intergenic
CTGGAGCTTAAGCTTGGAAT+AGG 0.466047 4_3:-24220002 Msa0635470:CDS
ATGTCCAACCTTGCCAGATC+CGG 0.468622 4_3:+24219188 None:intergenic
TTGTGTTTGGGTGTAGTTGG+TGG 0.471210 4_3:-24222715 Msa0635470:CDS
GGCAAGAATGGAATGAATGA+TGG 0.471565 4_3:+24220923 None:intergenic
GGCAATTTGAAATTGTATGA+TGG 0.472443 4_3:-24218369 Msa0635470:three_prime_UTR
GATAAACAATGTAAAACAAC+AGG 0.476410 4_3:-24219618 Msa0635470:CDS
TCTCAGCTGGAGCTTAAGCT+TGG 0.484713 4_3:-24220008 Msa0635470:intron
AAGAAGAAGATGTTGTGTTT+GGG 0.485406 4_3:-24222727 Msa0635470:exon
AGGAGGATACCGGTTCAATC+AGG 0.490296 4_3:+24219268 None:intergenic
TGCAGACTTCAGCAAACCTC+CGG 0.495333 4_3:-24220798 Msa0635470:intron
CATAGTAATATGCAAAAGAA+AGG 0.500735 4_3:-24218292 Msa0635470:three_prime_UTR
GGAGCAATTTGAACATCTCT+CGG 0.515917 4_3:+24219209 None:intergenic
TGTGGTATATGTTTCTGTTG+TGG 0.520157 4_3:-24218345 Msa0635470:three_prime_UTR
AAAAGATGCAAATACTGTCT+TGG 0.520613 4_3:-24219590 Msa0635470:CDS
ATATTAAACATCTAATCAAA+AGG 0.525443 4_3:+24218412 None:intergenic
TTCTTATAGATATTGTAAGT+AGG 0.529570 4_3:-24218390 Msa0635470:three_prime_UTR
CAATAAGAGGTGGCGTGTCA+TGG 0.530836 4_3:-24222623 Msa0635470:CDS
GCAATTTGAAATTGTATGAT+GGG 0.533710 4_3:-24218368 Msa0635470:three_prime_UTR
TCTTTGCACCGGAATGGCTA+TGG 0.534453 4_3:-24218461 Msa0635470:CDS
TGTGTTTGGGTGTAGTTGGT+GGG 0.535913 4_3:-24222714 Msa0635470:CDS
TGAAATTGGATCGAAAATTG+AGG 0.537706 4_3:+24222784 None:intergenic
CCACCATTGAAGGAGGATAC+CGG 0.540857 4_3:+24219258 None:intergenic
AGCACTTGTCCTGATTGAAC+CGG 0.540917 4_3:-24219277 Msa0635470:CDS
GAACCGGTATCCTCCTTCAA+TGG 0.546734 4_3:-24219261 Msa0635470:CDS
AACAGGTTGCATAATACTGC+CGG 0.551192 4_3:+24220779 None:intergenic
GAGAGATGTTCAAATTGCTC+CGG 0.560664 4_3:-24219207 Msa0635470:CDS
AACATGTCTTTGCACCGGAA+TGG 0.564128 4_3:-24218467 Msa0635470:CDS
GCAAGAATGGAATGAATGAT+GGG 0.568641 4_3:+24220924 None:intergenic
TGCATCTGCCTATGCAGTTG+AGG 0.569061 4_3:-24219947 Msa0635470:intron
TATCCATATTCCCAGAGAGA+TGG 0.569523 4_3:-24218244 Msa0635470:three_prime_UTR
AAATTGCTCCGGATCTGGCA+AGG 0.573161 4_3:-24219196 Msa0635470:intron
GGTATCTTATCCATCTCTCT+GGG 0.574686 4_3:+24218234 None:intergenic
TAGTCAGGTTGATCCTATTG+TGG 0.580018 4_3:-24219693 Msa0635470:CDS
TAATCAAAAGGATCAATTCG+CGG 0.580042 4_3:+24218424 None:intergenic
TTGAAATTGTATGATGGGTG+TGG 0.585204 4_3:-24218363 Msa0635470:three_prime_UTR
ATTGTGGCATCATTCTCTGG+TGG 0.587254 4_3:-24219677 Msa0635470:CDS
AATGGACTGCACAAATTGGT+GGG 0.587469 4_3:+24222848 None:intergenic
TGATACCACCCGGAACAGAA+TGG 0.591352 4_3:-24218194 Msa0635470:three_prime_UTR
ATTCCGGTGCAAAGACATGT+TGG 0.592847 4_3:+24218469 None:intergenic
AGGATAATATTCGGAGTCGA+AGG 0.596991 4_3:-24222370 Msa0635470:CDS
CCGGTATCCTCCTTCAATGG+TGG 0.599228 4_3:-24219258 Msa0635470:CDS
TGTCCAACATGTCTTTGCAC+CGG 0.600830 4_3:-24218472 Msa0635470:CDS
TACATGAAACTTACCAAAGG+AGG 0.601236 4_3:+24220902 None:intergenic
TAAATCTTACACTCGGAGCA+AGG 0.601691 4_3:+24220719 None:intergenic
GAGCTTAAGCTTGGAATAGG+TGG 0.603781 4_3:-24219999 Msa0635470:CDS
GGACGCTACCTCAACTGCAT+AGG 0.605455 4_3:+24219939 None:intergenic
GATGGAAAGTTTGAGAATGG+AGG 0.611459 4_3:+24222818 None:intergenic
GTTTAGTTGAAGACATGTTG+TGG 0.621480 4_3:+24222690 None:intergenic
CTGATCTCCACCATTGAAGG+AGG 0.622262 4_3:+24219251 None:intergenic
AAATGGACTGCACAAATTGG+TGG 0.626713 4_3:+24222847 None:intergenic
TGTTCCGGGTGGTATCAAGA+TGG 0.627932 4_3:+24218200 None:intergenic
AAAACAGTTTCAATAAGAGG+TGG 0.630936 4_3:-24222633 Msa0635470:CDS
AGTTCCATCTTGATACCACC+CGG 0.651553 4_3:-24218204 Msa0635470:three_prime_UTR
TGTGCTCGATGTTCAAACAC+GGG 0.651986 4_3:-24219300 Msa0635470:CDS
TAGCAATGGAATCAAAAGTG+AGG 0.658768 4_3:-24222958 None:intergenic
ATGTGCTCGATGTTCAAACA+CGG 0.661742 4_3:-24219301 Msa0635470:CDS
ATCAAGATGGAACTGAGTCG+AGG 0.668471 4_3:+24218213 None:intergenic
AGGTTGCATAATACTGCCGG+AGG 0.679756 4_3:+24220782 None:intergenic
ATGGACTGCACAAATTGGTG+GGG 0.694345 4_3:+24222849 None:intergenic
GGAAACCATTCTGTTCCGGG+TGG 0.736398 4_3:+24218189 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAATTTAATATTGAA+TGG - chr4_3:24219076-24219095 Msa0635470:intron 10.0%
!!! TGATAATATTTTTATTGATA+AGG - chr4_3:24220817-24220836 Msa0635470:intron 10.0%
!! ATAAAAAACTATGAAAAAAA+TGG + chr4_3:24222271-24222290 None:intergenic 10.0%
!!! TAAAATAGATATATTGCTTT+TGG + chr4_3:24218113-24218132 None:intergenic 15.0%
!!! AATTCCATCATTTTTTAAAA+CGG + chr4_3:24218539-24218558 None:intergenic 15.0%
!!! GAATAAGATTTTTTTACATA+TGG - chr4_3:24218665-24218684 Msa0635470:intron 15.0%
!! TAAAAAAATATTGAAGATGA+AGG - chr4_3:24219120-24219139 Msa0635470:intron 15.0%
!! AAAAAAATATTGAAGATGAA+GGG - chr4_3:24219121-24219140 Msa0635470:intron 15.0%
!! TGATTATATACACAATTATA+CGG + chr4_3:24219621-24219640 None:intergenic 15.0%
!!! ATTTATACATTTTACTCTAT+GGG - chr4_3:24219938-24219957 Msa0635470:intron 15.0%
!! AGTATTACTTATCTATATTA+TGG + chr4_3:24221908-24221927 None:intergenic 15.0%
!! TGAACTTTAAATTAAGTTAA+AGG + chr4_3:24221979-24221998 None:intergenic 15.0%
!! AGAAATGAATAAAAGAATTA+TGG - chr4_3:24222167-24222186 Msa0635470:intron 15.0%
!! AATTATGGTTTACAATTTAA+TGG - chr4_3:24222182-24222201 Msa0635470:intron 15.0%
!! ATTATGGTTTACAATTTAAT+GGG - chr4_3:24222183-24222202 Msa0635470:intron 15.0%
!! ATATTAAACATCTAATCAAA+AGG + chr4_3:24222604-24222623 None:intergenic 15.0%
!!! TCAACTTTAAGATTGAAAAA+AGG + chr4_3:24218256-24218275 None:intergenic 20.0%
!!! ATTTAGATGAATGAATCTTT+TGG + chr4_3:24218353-24218372 None:intergenic 20.0%
!! GGTGTATTTCATAAAAAAAA+GGG + chr4_3:24218515-24218534 None:intergenic 20.0%
!!! ATTCCATCATTTTTTAAAAC+GGG + chr4_3:24218538-24218557 None:intergenic 20.0%
!! AAGAAATTCAGGATAATATT+CGG - chr4_3:24218634-24218653 Msa0635470:intron 20.0%
!! AATTGTTAATGTATACAATC+CGG + chr4_3:24218785-24218804 None:intergenic 20.0%
!!! CAGTTTGATTTTATTACTTA+TGG - chr4_3:24219772-24219791 Msa0635470:intron 20.0%
!! ATGTATACATAAAATTGAGA+TGG - chr4_3:24219806-24219825 Msa0635470:intron 20.0%
!! CATAGAGTAAAATGTATAAA+TGG + chr4_3:24219939-24219958 None:intergenic 20.0%
!!! CATTTATACATTTTACTCTA+TGG - chr4_3:24219937-24219956 Msa0635470:intron 20.0%
!!! ATATACTCTTGTTATTTTGT+AGG - chr4_3:24219981-24220000 Msa0635470:CDS 20.0%
!! TAATGAAGTAGAATATGAAA+TGG + chr4_3:24220386-24220405 None:intergenic 20.0%
!! TTCATATTCTACTTCATTAA+TGG - chr4_3:24220387-24220406 Msa0635470:intron 20.0%
!! TACAATATAGATTATTACGA+CGG + chr4_3:24220506-24220525 None:intergenic 20.0%
!!! TATTTTTATTGATAAGGCTT+AGG - chr4_3:24220823-24220842 Msa0635470:intron 20.0%
!! CAACATAATTTCGTTATTAT+TGG + chr4_3:24221293-24221312 None:intergenic 20.0%
!! CAATAATAACGAAATTATGT+TGG - chr4_3:24221291-24221310 Msa0635470:intron 20.0%
!!! TGACATTTCTATTATACTTT+TGG - chr4_3:24221671-24221690 Msa0635470:intron 20.0%
!! ATTACTTATCTATATTATGG+CGG + chr4_3:24221905-24221924 None:intergenic 20.0%
!!! ATTTTCGTTTTGAAAGATAA+AGG + chr4_3:24222036-24222055 None:intergenic 20.0%
!! TTCTTATAGATATTGTAAGT+AGG - chr4_3:24222623-24222642 Msa0635470:CDS 20.0%
!! CATTCAATTCTCAAAAATAA+AGG + chr4_3:24222848-24222867 None:intergenic 20.0%
!!! TTATTTTTGAGAATTGAATG+TGG - chr4_3:24222848-24222867 Msa0635470:five_prime_UTR 20.0%
!!! TATTTTTAGTGGAGTTTAGA+CGG + chr4_3:24218084-24218103 None:intergenic 25.0%
!!! AGATATATTGCTTTTGGAAA+GGG + chr4_3:24218107-24218126 None:intergenic 25.0%
!!! TAGATATATTGCTTTTGGAA+AGG + chr4_3:24218108-24218127 None:intergenic 25.0%
! GATTGAAAAAAGGTTGAAAT+TGG + chr4_3:24218246-24218265 None:intergenic 25.0%
! AGAAAAACAGTTTCAATAAG+AGG - chr4_3:24218377-24218396 Msa0635470:three_prime_UTR 25.0%
! GGGTGTATTTCATAAAAAAA+AGG + chr4_3:24218516-24218535 None:intergenic 25.0%
!!! TTCCATCATTTTTTAAAACG+GGG + chr4_3:24218537-24218556 None:intergenic 25.0%
!!! ATTTTTATTGTTTTGAACGC+AGG - chr4_3:24218556-24218575 Msa0635470:intron 25.0%
!!! GATTTTTTTACATATGGAAG+AGG - chr4_3:24218671-24218690 Msa0635470:intron 25.0%
! ATTGTTAATGTATACAATCC+GGG + chr4_3:24218784-24218803 None:intergenic 25.0%
!! TGCAATCACTAACATATTTT+TGG + chr4_3:24218942-24218961 None:intergenic 25.0%
! CATCATTATTGTTCTTTCTT+CGG + chr4_3:24218989-24219008 None:intergenic 25.0%
! ATTTAATATTGAATGGACGA+TGG - chr4_3:24219083-24219102 Msa0635470:intron 25.0%
! AATTGTGTATATAATCACAC+TGG - chr4_3:24219624-24219643 Msa0635470:CDS 25.0%
!!! TAAAATTGAGATGGATTTTC+TGG - chr4_3:24219815-24219834 Msa0635470:intron 25.0%
!! TGGTAATTTGAATTTTCAAC+AGG + chr4_3:24219919-24219938 None:intergenic 25.0%
! AGAATTAAAAATGCTGAACT+TGG - chr4_3:24220027-24220046 Msa0635470:intron 25.0%
! GTAAAAGTAAATCTTACACT+CGG + chr4_3:24220304-24220323 None:intergenic 25.0%
! ACAATATAGATTATTACGAC+GGG + chr4_3:24220505-24220524 None:intergenic 25.0%
! CGTAATAATCTATATTGTAG+CGG - chr4_3:24220507-24220526 Msa0635470:intron 25.0%
!! TTATTGTAATTTTTGTCTCG+TGG + chr4_3:24220649-24220668 None:intergenic 25.0%
! TTAGGTTAAGCAAATATTAC+TGG + chr4_3:24220767-24220786 None:intergenic 25.0%
!! CTTTTTATATCCATCTTTTG+TGG - chr4_3:24220942-24220961 Msa0635470:CDS 25.0%
! AATGCTGAAAATTATTCTCT+AGG - chr4_3:24221194-24221213 Msa0635470:intron 25.0%
! ATGCTGAAAATTATTCTCTA+GGG - chr4_3:24221195-24221214 Msa0635470:intron 25.0%
! GATAAACAATGTAAAACAAC+AGG - chr4_3:24221395-24221414 Msa0635470:intron 25.0%
! TTAGGAATCAAATTTCTGAA+TGG - chr4_3:24221486-24221505 Msa0635470:intron 25.0%
! GTAACAATTTGCATTAAGAA+AGG + chr4_3:24221546-24221565 None:intergenic 25.0%
! AAATTAAGTTAAAGGACTTC+TGG + chr4_3:24221971-24221990 None:intergenic 25.0%
!! ATTGCCCTTTTATGAAATTT+TGG - chr4_3:24222098-24222117 Msa0635470:intron 25.0%
! TTCATTTCTACTAGCTAAAA+TGG + chr4_3:24222156-24222175 None:intergenic 25.0%
! GTTACAATTATCATCATCAA+GGG + chr4_3:24222361-24222380 None:intergenic 25.0%
! AGTTACAATTATCATCATCA+AGG + chr4_3:24222362-24222381 None:intergenic 25.0%
! AAGATATAGACGATTAATCT+AGG + chr4_3:24222432-24222451 None:intergenic 25.0%
!! GCAATTTGAAATTGTATGAT+GGG - chr4_3:24222645-24222664 Msa0635470:CDS 25.0%
! CATAGTAATATGCAAAAGAA+AGG - chr4_3:24222721-24222740 Msa0635470:CDS 25.0%
!! TGTTTTGTAGAATAGTAATC+AGG + chr4_3:24222930-24222949 None:intergenic 25.0%
! TGATTACTATTCTACAAAAC+AGG - chr4_3:24222929-24222948 Msa0635470:five_prime_UTR 25.0%
!!! TTTGGAAAGGGTATTTTTAG+TGG + chr4_3:24218095-24218114 None:intergenic 30.0%
TGAAATTGGATCGAAAATTG+AGG + chr4_3:24218232-24218251 None:intergenic 30.0%
AAAGAAGAAGATGTTGTGTT+TGG - chr4_3:24218285-24218304 Msa0635470:three_prime_UTR 30.0%
AAGAAGAAGATGTTGTGTTT+GGG - chr4_3:24218286-24218305 Msa0635470:three_prime_UTR 30.0%
AAAACAGTTTCAATAAGAGG+TGG - chr4_3:24218380-24218399 Msa0635470:three_prime_UTR 30.0%
!!! TCCATCATTTTTTAAAACGG+GGG + chr4_3:24218536-24218555 None:intergenic 30.0%
! TGTACAAGATTTTGCTAAGA+TGG - chr4_3:24218605-24218624 Msa0635470:intron 30.0%
!! GTAAATAGTCATTTTAGTCC+CGG - chr4_3:24218763-24218782 Msa0635470:intron 30.0%
! TTGAACTCGAGTTATCATTT+TGG + chr4_3:24218810-24218829 None:intergenic 30.0%
TGTTAACTCTCTAATTCCTA+GGG + chr4_3:24218906-24218925 None:intergenic 30.0%
CTGAAGATCTCTACTATATA+AGG + chr4_3:24219405-24219424 None:intergenic 30.0%
! GATGATATGATGATGATTCT+CGG - chr4_3:24219505-24219524 Msa0635470:intron 30.0%
AAAGAAGTCAATAGTTGTTC+CGG + chr4_3:24219598-24219617 None:intergenic 30.0%
CAGGTTCTTTGTATTAAACA+TGG + chr4_3:24219900-24219919 None:intergenic 30.0%
! ATACATTTTACTCTATGGGA+TGG - chr4_3:24219942-24219961 Msa0635470:intron 30.0%
!!! TTGTTATTTTGTAGGTTCGA+AGG - chr4_3:24219989-24220008 Msa0635470:CDS 30.0%
AGTTACATGAAACTTACCAA+AGG + chr4_3:24220117-24220136 None:intergenic 30.0%
!! ACCTGTTTTTCTCTTATTAG+CGG - chr4_3:24220250-24220269 Msa0635470:intron 30.0%
! ATTAGCGGGATAATACTTTT+TGG - chr4_3:24220265-24220284 Msa0635470:intron 30.0%
ACTCTCCTTAACTATATTCT+TGG - chr4_3:24220791-24220810 Msa0635470:CDS 30.0%
CATTGCCAAGAATATAGTTA+AGG + chr4_3:24220799-24220818 None:intergenic 30.0%
TAGGATGTACAGCAAATTAA+TGG - chr4_3:24220842-24220861 Msa0635470:intron 30.0%
ATTGAAAATGCCACAAAAGA+TGG + chr4_3:24220955-24220974 None:intergenic 30.0%
TGCTGAAAATTATTCTCTAG+GGG - chr4_3:24221196-24221215 Msa0635470:intron 30.0%
TTATGTTGGAAATTGTAGTC+AGG - chr4_3:24221305-24221324 Msa0635470:intron 30.0%
AAAAGATGCAAATACTGTCT+TGG - chr4_3:24221423-24221442 Msa0635470:intron 30.0%
TAAGACTTCAAAAACCACTT+CGG - chr4_3:24221452-24221471 Msa0635470:intron 30.0%
!!! TATTATACTTTTGGCTTGTC+AGG - chr4_3:24221680-24221699 Msa0635470:intron 30.0%
! CATAAAAGGGCAATTTTTCA+CGG + chr4_3:24222092-24222111 None:intergenic 30.0%
GGCACCAAAATTTCATAAAA+GGG + chr4_3:24222105-24222124 None:intergenic 30.0%
TGGCACCAAAATTTCATAAA+AGG + chr4_3:24222106-24222125 None:intergenic 30.0%
GTATCTTCACTTCAGAATTA+TGG + chr4_3:24222221-24222240 None:intergenic 30.0%
TAGTCTATGTCTAGATAACA+TGG + chr4_3:24222396-24222415 None:intergenic 30.0%
TAGACATAGACTAATTAGCT+TGG - chr4_3:24222403-24222422 Msa0635470:CDS 30.0%
TAATCAAAAGGATCAATTCG+CGG + chr4_3:24222592-24222611 None:intergenic 30.0%
! GGCAATTTGAAATTGTATGA+TGG - chr4_3:24222644-24222663 Msa0635470:CDS 30.0%
! ATGTTTCTGTTGTGGAATAA+TGG - chr4_3:24222676-24222695 Msa0635470:CDS 30.0%
GAGATAAAGATTGAAAGATC+TGG - chr4_3:24222743-24222762 Msa0635470:five_prime_UTR 30.0%
CCATTCTCAAAAAGTTATCA+TGG + chr4_3:24222890-24222909 None:intergenic 30.0%
!! CCATGATAACTTTTTGAGAA+TGG - chr4_3:24222887-24222906 Msa0635470:five_prime_UTR 30.0%
AGAATGGACACAAGAAATTA+GGG - chr4_3:24222903-24222922 Msa0635470:five_prime_UTR 30.0%
!! TGAAAATGGACTGCACAAAT+TGG + chr4_3:24218172-24218191 None:intergenic 35.0%
! GTTGATGGAAAGTTTGAGAA+TGG + chr4_3:24218201-24218220 None:intergenic 35.0%
! ATTGAGGTAGTTGTTGTTGA+TGG + chr4_3:24218216-24218235 None:intergenic 35.0%
GTTTAGTTGAAGACATGTTG+TGG + chr4_3:24218326-24218345 None:intergenic 35.0%
!!! ACCCCCGTTTTAAAAAATGA+TGG - chr4_3:24218532-24218551 Msa0635470:intron 35.0%
GCAAAATCTTGTACAGTTTC+AGG + chr4_3:24218600-24218619 None:intergenic 35.0%
GATGGAACTTCAAGAAATTC+AGG - chr4_3:24218623-24218642 Msa0635470:intron 35.0%
GATAACTCGAGTTCAATTCT+TGG - chr4_3:24218814-24218833 Msa0635470:intron 35.0%
AGTCTGGTCAAAAATTGTAC+TGG + chr4_3:24218840-24218859 None:intergenic 35.0%
ACCAGACTTTACTTACCTTT+CGG - chr4_3:24218852-24218871 Msa0635470:intron 35.0%
! TCATTCGAAGTTTTTCCGAA+AGG + chr4_3:24218870-24218889 None:intergenic 35.0%
GGAAAAACTTCGAATGACTA+GGG - chr4_3:24218873-24218892 Msa0635470:intron 35.0%
GTTAACTCTCTAATTCCTAG+GGG + chr4_3:24218905-24218924 None:intergenic 35.0%
GTGTTAACTCTCTAATTCCT+AGG + chr4_3:24218907-24218926 None:intergenic 35.0%
AATATTGAATGGACGATGGT+TGG - chr4_3:24219087-24219106 Msa0635470:intron 35.0%
CTTATGTTGGAAACTTTCCT+CGG + chr4_3:24219185-24219204 None:intergenic 35.0%
AGATCATTGGCATCTTATGT+TGG + chr4_3:24219198-24219217 None:intergenic 35.0%
AAGATGCCAATGATCTAAAG+TGG - chr4_3:24219202-24219221 Msa0635470:CDS 35.0%
CAAGTTCCACTTTAGATCAT+TGG + chr4_3:24219211-24219230 None:intergenic 35.0%
CTAAAGTGGAACTTGAATGA+TGG - chr4_3:24219216-24219235 Msa0635470:CDS 35.0%
GTAGAGATCTTCAGAAGAAT+TGG - chr4_3:24219411-24219430 Msa0635470:intron 35.0%
AGATCTTCAGAAGAATTGGA+GGG - chr4_3:24219415-24219434 Msa0635470:intron 35.0%
TCAATTCTTGCCTTGATAAG+TGG - chr4_3:24219466-24219485 Msa0635470:intron 35.0%
! ATATGATGATGATTCTCGGA+GGG - chr4_3:24219509-24219528 Msa0635470:intron 35.0%
CATGAGATTCCAATCCAAAT+GGG - chr4_3:24219560-24219579 Msa0635470:intron 35.0%
TGTGTATATAATCACACTGG+TGG - chr4_3:24219627-24219646 Msa0635470:CDS 35.0%
ATAATCACACTGGTGGTTTA+TGG - chr4_3:24219634-24219653 Msa0635470:CDS 35.0%
TAATCACACTGGTGGTTTAT+GGG - chr4_3:24219635-24219654 Msa0635470:CDS 35.0%
! TTAAGATCACTGTTGCTTGT+AGG - chr4_3:24219693-24219712 Msa0635470:CDS 35.0%
! GGAATGAATGATGGGAAATT+AGG + chr4_3:24220084-24220103 None:intergenic 35.0%
GCAAGAATGGAATGAATGAT+GGG + chr4_3:24220092-24220111 None:intergenic 35.0%
TACATGAAACTTACCAAAGG+AGG + chr4_3:24220114-24220133 None:intergenic 35.0%
! TGCTTTCAATTTGAAGTGCT+TGG - chr4_3:24220164-24220183 Msa0635470:intron 35.0%
! AATTTGAAGTGCTTGGCAAA+TGG - chr4_3:24220171-24220190 Msa0635470:intron 35.0%
!! CCTGTTTTTCTCTTATTAGC+GGG - chr4_3:24220251-24220270 Msa0635470:intron 35.0%
AGATCAGTGTTGTCAAATAG+CGG - chr4_3:24220479-24220498 Msa0635470:intron 35.0%
!! AACAAATCGGTGTCAAATAG+AGG - chr4_3:24220536-24220555 Msa0635470:intron 35.0%
GTGTCAAATAGAGGCTATAT+CGG - chr4_3:24220545-24220564 Msa0635470:intron 35.0%
GTGTTGTCAATCATGAATAG+TGG + chr4_3:24220607-24220626 None:intergenic 35.0%
!! TGGCCAATCCTTTTACTTTT+GGG - chr4_3:24220734-24220753 Msa0635470:CDS 35.0%
!!! TAGTTAAGGAGAGTGCTTTT+AGG + chr4_3:24220785-24220804 None:intergenic 35.0%
! TTTGAGGTAGCATGATCAAA+AGG + chr4_3:24220899-24220918 None:intergenic 35.0%
!! GTACAATGTAGTGCTTTTTG+AGG + chr4_3:24220915-24220934 None:intergenic 35.0%
TACTTGTCTAATTTCTCAGC+TGG - chr4_3:24220992-24221011 Msa0635470:CDS 35.0%
AGGTGACAATAATCAGGAAA+TGG + chr4_3:24221098-24221117 None:intergenic 35.0%
GTAAACAGGTGACAATAATC+AGG + chr4_3:24221104-24221123 None:intergenic 35.0%
TCTGCGAAGAATAAGTAAAC+AGG + chr4_3:24221118-24221137 None:intergenic 35.0%
TGTTTACTTATTCTTCGCAG+AGG - chr4_3:24221117-24221136 Msa0635470:intron 35.0%
TGGTGTAATCTCTGCATTAA+TGG - chr4_3:24221365-24221384 Msa0635470:intron 35.0%
GGAATCAAATTTCTGAATGG+TGG - chr4_3:24221489-24221508 Msa0635470:intron 35.0%
TTACTGCTTTCAACTGTTGA+GGG - chr4_3:24221562-24221581 Msa0635470:intron 35.0%
! TTTGAACATCTCTCGGTTTT+TGG + chr4_3:24221800-24221819 None:intergenic 35.0%
TTTGGACTGAAGATCACTAA+AGG + chr4_3:24222068-24222087 None:intergenic 35.0%
!!! ATGAAATTTTGGTGCCATGT+TGG - chr4_3:24222109-24222128 Msa0635470:intron 35.0%
TATATCTTCGCATACCTTCT+GGG - chr4_3:24222444-24222463 Msa0635470:intron 35.0%
ATTATTGCTACAAACCCAGA+AGG + chr4_3:24222461-24222480 None:intergenic 35.0%
TGATACTGAATTCTGATTGC+AGG - chr4_3:24222513-24222532 Msa0635470:intron 35.0%
!! TTGAAATTGTATGATGGGTG+TGG - chr4_3:24222650-24222669 Msa0635470:CDS 35.0%
! TGTGGTATATGTTTCTGTTG+TGG - chr4_3:24222668-24222687 Msa0635470:CDS 35.0%
TAAAGGAAACCATTCTGTTC+CGG + chr4_3:24222831-24222850 None:intergenic 35.0%
GAGAATGGACACAAGAAATT+AGG - chr4_3:24222902-24222921 Msa0635470:five_prime_UTR 35.0%
!! AATGGACTGCACAAATTGGT+GGG + chr4_3:24218168-24218187 None:intergenic 40.0%
!! AAATGGACTGCACAAATTGG+TGG + chr4_3:24218169-24218188 None:intergenic 40.0%
GAGAATGGAGGATGTGAAAA+TGG + chr4_3:24218186-24218205 None:intergenic 40.0%
GATGGAAAGTTTGAGAATGG+AGG + chr4_3:24218198-24218217 None:intergenic 40.0%
ATGTTGTGTTTGGGTGTAGT+TGG - chr4_3:24218295-24218314 Msa0635470:three_prime_UTR 40.0%
! GTTTTTATCGGTGGTATCAG+AGG + chr4_3:24218464-24218483 None:intergenic 40.0%
! AGTAGCAGAGTTTTTATCGG+TGG + chr4_3:24218473-24218492 None:intergenic 40.0%
ACCGATAAAAACTCTGCTAC+TGG - chr4_3:24218472-24218491 Msa0635470:CDS 40.0%
! CCCAGTAGCAGAGTTTTTAT+CGG + chr4_3:24218476-24218495 None:intergenic 40.0%
CCGATAAAAACTCTGCTACT+GGG - chr4_3:24218473-24218492 Msa0635470:CDS 40.0%
CGCAGGTTCTGTATTATAGA+AGG - chr4_3:24218573-24218592 Msa0635470:intron 40.0%
AGGATAATATTCGGAGTCGA+AGG - chr4_3:24218643-24218662 Msa0635470:intron 40.0%
TCCGAAAGGTAAGTAAAGTC+TGG + chr4_3:24218856-24218875 None:intergenic 40.0%
CGGAAAAACTTCGAATGACT+AGG - chr4_3:24218872-24218891 Msa0635470:intron 40.0%
GTTTATCATAGCCTGTATGC+AGG - chr4_3:24219024-24219043 Msa0635470:intron 40.0%
ACATTCATCTTCCTGCATAC+AGG + chr4_3:24219038-24219057 None:intergenic 40.0%
GAAGATGAAGGGATGATTAC+TGG - chr4_3:24219132-24219151 Msa0635470:intron 40.0%
AGTGGAACTTGAATGATGGT+TGG - chr4_3:24219220-24219239 Msa0635470:CDS 40.0%
!! TGAATGATGGTTGGTGATGA+CGG - chr4_3:24219229-24219248 Msa0635470:CDS 40.0%
TAGCATTCTGATGCTCAAGT+CGG - chr4_3:24219304-24219323 Msa0635470:CDS 40.0%
CTCAAGTCGGTAGAAGATTT+AGG - chr4_3:24219317-24219336 Msa0635470:intron 40.0%
GTAGAAGATTTAGGTGAGTG+AGG - chr4_3:24219326-24219345 Msa0635470:intron 40.0%
GAGATCTTCAGAAGAATTGG+AGG - chr4_3:24219414-24219433 Msa0635470:intron 40.0%
AGACGACAATCCACTTATCA+AGG + chr4_3:24219479-24219498 None:intergenic 40.0%
! GATATGATGATGATTCTCGG+AGG - chr4_3:24219508-24219527 Msa0635470:intron 40.0%
GCATGAGATTCCAATCCAAA+TGG - chr4_3:24219559-24219578 Msa0635470:intron 40.0%
AACTGTAGAACACTTTCTCG+CGG + chr4_3:24219757-24219776 None:intergenic 40.0%
GGCAAGAATGGAATGAATGA+TGG + chr4_3:24220093-24220112 None:intergenic 40.0%
AACAGGTTGCATAATACTGC+CGG + chr4_3:24220237-24220256 None:intergenic 40.0%
CCCGCTAATAAGAGAAAAAC+AGG + chr4_3:24220254-24220273 None:intergenic 40.0%
!! AGCGGGATAATACTTTTTGG+TGG - chr4_3:24220268-24220287 Msa0635470:intron 40.0%
TAAATCTTACACTCGGAGCA+AGG + chr4_3:24220297-24220316 None:intergenic 40.0%
! TGAATCCGACTCTTTTGTAC+TGG - chr4_3:24220347-24220366 Msa0635470:intron 40.0%
TTGCACCAGTACAAAAGAGT+CGG + chr4_3:24220355-24220374 None:intergenic 40.0%
! GTAGCGGAATTCGAACAAAT+CGG - chr4_3:24220523-24220542 Msa0635470:intron 40.0%
AACACTAGAGAAGAGAGAGA+GGG - chr4_3:24220622-24220641 Msa0635470:intron 40.0%
! CTGGCCAATCCTTTTACTTT+TGG - chr4_3:24220733-24220752 Msa0635470:CDS 40.0%
GCACCCAAAAGTAAAAGGAT+TGG + chr4_3:24220740-24220759 None:intergenic 40.0%
! TCTCTAGGGGCATATTCTAT+TGG - chr4_3:24221209-24221228 Msa0635470:intron 40.0%
!! TAGTCAGGTTGATCCTATTG+TGG - chr4_3:24221320-24221339 Msa0635470:intron 40.0%
TGCAAATACTGTCTTGGTAC+TGG - chr4_3:24221429-24221448 Msa0635470:intron 40.0%
TAAAATGCAGATCTCCGAAG+TGG + chr4_3:24221469-24221488 None:intergenic 40.0%
! ACTTCGGAGATCTGCATTTT+AGG - chr4_3:24221468-24221487 Msa0635470:intron 40.0%
! ATGGTGGAACTGAAGCATTA+TGG - chr4_3:24221505-24221524 Msa0635470:intron 40.0%
GTTACTGCTTTCAACTGTTG+AGG - chr4_3:24221561-24221580 Msa0635470:intron 40.0%
TACTGCTTTCAACTGTTGAG+GGG - chr4_3:24221563-24221582 Msa0635470:intron 40.0%
ATGTGCTCGATGTTCAAACA+CGG - chr4_3:24221712-24221731 Msa0635470:intron 40.0%
!!! TCGGTTTTTGGTGGTGATAA+AGG + chr4_3:24221788-24221807 None:intergenic 40.0%
GGAGCAATTTGAACATCTCT+CGG + chr4_3:24221807-24221826 None:intergenic 40.0%
GAGAGATGTTCAAATTGCTC+CGG - chr4_3:24221806-24221825 Msa0635470:intron 40.0%
! AGGGCAATTTTTCACGGTTT+TGG + chr4_3:24222086-24222105 None:intergenic 40.0%
CTTCCAAAATAAGGCCAACA+TGG + chr4_3:24222126-24222145 None:intergenic 40.0%
! GGCATCGAACTTCCAAAATA+AGG + chr4_3:24222135-24222154 None:intergenic 40.0%
CTATATCTTCGCATACCTTC+TGG - chr4_3:24222443-24222462 Msa0635470:intron 40.0%
TATCCATATTCCCAGAGAGA+TGG - chr4_3:24222769-24222788 Msa0635470:five_prime_UTR 40.0%
! TATCCATCTCTCTGGGAATA+TGG + chr4_3:24222775-24222794 None:intergenic 40.0%
GGTATCTTATCCATCTCTCT+GGG + chr4_3:24222782-24222801 None:intergenic 40.0%
AGGTATCTTATCCATCTCTC+TGG + chr4_3:24222783-24222802 None:intergenic 40.0%
AAAGGAAACCATTCTGTTCC+GGG + chr4_3:24222830-24222849 None:intergenic 40.0%
! ATGGACTGCACAAATTGGTG+GGG + chr4_3:24218167-24218186 None:intergenic 45.0%
TTGTGTTTGGGTGTAGTTGG+TGG - chr4_3:24218298-24218317 Msa0635470:three_prime_UTR 45.0%
TGTGTTTGGGTGTAGTTGGT+GGG - chr4_3:24218299-24218318 Msa0635470:three_prime_UTR 45.0%
GATGAAGGGATGATTACTGG+TGG - chr4_3:24219135-24219154 Msa0635470:intron 45.0%
TGGAAACTTTCCTCGGTCAA+AGG + chr4_3:24219178-24219197 None:intergenic 45.0%
!! TTGGTGATGACGGAACATAG+TGG - chr4_3:24219239-24219258 Msa0635470:CDS 45.0%
TTGAGCATCAGAATGCTAGC+AGG + chr4_3:24219302-24219321 None:intergenic 45.0%
ATTCCAATCCAAATGGGCCT+TGG - chr4_3:24219566-24219585 Msa0635470:intron 45.0%
CATTCCATTCTTGCCTCCTT+TGG - chr4_3:24220098-24220117 Msa0635470:intron 45.0%
CTTACCAAAGGAGGCAAGAA+TGG + chr4_3:24220105-24220124 None:intergenic 45.0%
AAAGAGTCGGATTCACATCG+AGG + chr4_3:24220342-24220361 None:intergenic 45.0%
!! GTGCTATAGCACTGATGAGT+AGG - chr4_3:24220567-24220586 Msa0635470:intron 45.0%
CAACACTAGAGAAGAGAGAG+AGG - chr4_3:24220621-24220640 Msa0635470:intron 45.0%
CCAGCAACAGCAATAGCATA+GGG + chr4_3:24220717-24220736 None:intergenic 45.0%
GCAACGCACCCAAAAGTAAA+AGG + chr4_3:24220745-24220764 None:intergenic 45.0%
CTGGAGCTTAAGCTTGGAAT+AGG - chr4_3:24221011-24221030 Msa0635470:CDS 45.0%
GAGCTTAAGCTTGGAATAGG+TGG - chr4_3:24221014-24221033 Msa0635470:intron 45.0%
TGGCGTCAGATTATCACTGT+TGG - chr4_3:24221229-24221248 Msa0635470:intron 45.0%
CCAGAGAATGATGCCACAAT+AGG + chr4_3:24221336-24221355 None:intergenic 45.0%
CCTATTGTGGCATCATTCTC+TGG - chr4_3:24221333-24221352 Msa0635470:intron 45.0%
ATTGTGGCATCATTCTCTGG+TGG - chr4_3:24221336-24221355 Msa0635470:intron 45.0%
TTCAACTGTTGAGGGGAAGA+TGG - chr4_3:24221570-24221589 Msa0635470:intron 45.0%
TGTGCTCGATGTTCAAACAC+GGG - chr4_3:24221713-24221732 Msa0635470:intron 45.0%
AGCACTTGTCCTGATTGAAC+CGG - chr4_3:24221736-24221755 Msa0635470:intron 45.0%
!! GAACATCTCTCGGTTTTTGG+TGG + chr4_3:24221797-24221816 None:intergenic 45.0%
TGTTCAAATTGCTCCGGATC+TGG - chr4_3:24221812-24221831 Msa0635470:intron 45.0%
!!! GTGCCATGTTGGCCTTATTT+TGG - chr4_3:24222120-24222139 Msa0635470:intron 45.0%
GCAGAGGTCTAACGACAAAA+AGG + chr4_3:24222296-24222315 None:intergenic 45.0%
ACCTCTGCCTTACTAACACT+CGG - chr4_3:24222308-24222327 Msa0635470:intron 45.0%
ACTGTACCCGAGTGTTAGTA+AGG + chr4_3:24222318-24222337 None:intergenic 45.0%
ACTAACACTCGGGTACAGTT+TGG - chr4_3:24222319-24222338 Msa0635470:intron 45.0%
TCAAGGGAACAATGTTGACG+TGG + chr4_3:24222345-24222364 None:intergenic 45.0%
TGTCCAACATGTCTTTGCAC+CGG - chr4_3:24222541-24222560 Msa0635470:CDS 45.0%
ATTCCGGTGCAAAGACATGT+TGG + chr4_3:24222547-24222566 None:intergenic 45.0%
AACATGTCTTTGCACCGGAA+TGG - chr4_3:24222546-24222565 Msa0635470:CDS 45.0%
ATCAAGATGGAACTGAGTCG+AGG + chr4_3:24222803-24222822 None:intergenic 45.0%
AGTTCCATCTTGATACCACC+CGG - chr4_3:24222809-24222828 Msa0635470:five_prime_UTR 45.0%
!! AAAAATTAAATTTAAAAAAG+TGG - chr4_3:24222245-24222264 Msa0635470:intron 5.0%
CAATAAGAGGTGGCGTGTCA+TGG - chr4_3:24218390-24218409 Msa0635470:three_prime_UTR 50.0%
AGGGATGATTACTGGTGGCA+AGG - chr4_3:24219140-24219159 Msa0635470:intron 50.0%
GGGATGATTACTGGTGGCAA+GGG - chr4_3:24219141-24219160 Msa0635470:intron 50.0%
ATTACTGGTGGCAAGGGAAG+TGG - chr4_3:24219147-24219166 Msa0635470:intron 50.0%
AGTGGAAACTCCTTTGACCG+AGG - chr4_3:24219165-24219184 Msa0635470:intron 50.0%
!! GTGATGACGGAACATAGTGG+AGG - chr4_3:24219242-24219261 Msa0635470:CDS 50.0%
! ATGACGGAACATAGTGGAGG+AGG - chr4_3:24219245-24219264 Msa0635470:CDS 50.0%
GGAGGTTGACGATTGATCTC+TGG - chr4_3:24219263-24219282 Msa0635470:CDS 50.0%
GGTTGACGATTGATCTCTGG+CGG - chr4_3:24219266-24219285 Msa0635470:CDS 50.0%
GTTGACGATTGATCTCTGGC+GGG - chr4_3:24219267-24219286 Msa0635470:CDS 50.0%
TTGACGATTGATCTCTGGCG+GGG - chr4_3:24219268-24219287 Msa0635470:CDS 50.0%
TGATGTGTACCTTGCTCCTG+AGG - chr4_3:24219366-24219385 Msa0635470:intron 50.0%
GATGTGTACCTTGCTCCTGA+GGG - chr4_3:24219367-24219386 Msa0635470:intron 50.0%
GCGTCTTCTCACGTACTCAA+TGG + chr4_3:24219446-24219465 None:intergenic 50.0%
TGCAGACTTCAGCAAACCTC+CGG - chr4_3:24220215-24220234 Msa0635470:intron 50.0%
AGGTTGCATAATACTGCCGG+AGG + chr4_3:24220234-24220253 None:intergenic 50.0%
! CCCTATGCTATTGCTGTTGC+TGG - chr4_3:24220714-24220733 Msa0635470:intron 50.0%
GCCAGCAACAGCAATAGCAT+AGG + chr4_3:24220718-24220737 None:intergenic 50.0%
TCTCAGCTGGAGCTTAAGCT+TGG - chr4_3:24221005-24221024 Msa0635470:CDS 50.0%
TGCATCTGCCTATGCAGTTG+AGG - chr4_3:24221066-24221085 Msa0635470:intron 50.0%
TCATTCTCTGGTGGAGCTGT+TGG - chr4_3:24221345-24221364 Msa0635470:intron 50.0%
!! AGGAGGATACCGGTTCAATC+AGG + chr4_3:24221748-24221767 None:intergenic 50.0%
GAACCGGTATCCTCCTTCAA+TGG - chr4_3:24221752-24221771 Msa0635470:intron 50.0%
CCACCATTGAAGGAGGATAC+CGG + chr4_3:24221758-24221777 None:intergenic 50.0%
CTGATCTCCACCATTGAAGG+AGG + chr4_3:24221765-24221784 None:intergenic 50.0%
AGGCTGATCTCCACCATTGA+AGG + chr4_3:24221768-24221787 None:intergenic 50.0%
AAATTGCTCCGGATCTGGCA+AGG - chr4_3:24221817-24221836 Msa0635470:intron 50.0%
ATGTCCAACCTTGCCAGATC+CGG + chr4_3:24221828-24221847 None:intergenic 50.0%
CCTCTGCCTTACTAACACTC+GGG - chr4_3:24222309-24222328 Msa0635470:intron 50.0%
TCTTTGCACCGGAATGGCTA+TGG - chr4_3:24222552-24222571 Msa0635470:CDS 50.0%
TTCGCTTGCCATAGCCATTC+CGG + chr4_3:24222563-24222582 None:intergenic 50.0%
TGTTCCGGGTGGTATCAAGA+TGG + chr4_3:24222816-24222835 None:intergenic 50.0%
TGATACCACCCGGAACAGAA+TGG - chr4_3:24222819-24222838 Msa0635470:five_prime_UTR 50.0%
TGACTAGGGACACTTCCCCT+AGG - chr4_3:24218887-24218906 Msa0635470:intron 55.0%
GAGCCAAGGCCCATTTGGAT+TGG + chr4_3:24219572-24219591 None:intergenic 55.0%
AAATGGGCCTTGGCTCAGTC+CGG - chr4_3:24219576-24219595 Msa0635470:intron 55.0%
AGTTGTTCCGGACTGAGCCA+AGG + chr4_3:24219586-24219605 None:intergenic 55.0%
GGACGCTACCTCAACTGCAT+AGG + chr4_3:24221077-24221096 None:intergenic 55.0%
CCGGTATCCTCCTTCAATGG+TGG - chr4_3:24221755-24221774 Msa0635470:intron 55.0%
CCCGAGTGTTAGTAAGGCAG+AGG + chr4_3:24222312-24222331 None:intergenic 55.0%
GGAAACCATTCTGTTCCGGG+TGG + chr4_3:24222827-24222846 None:intergenic 55.0%
CGATTGATCTCTGGCGGGGA+TGG - chr4_3:24219272-24219291 Msa0635470:CDS 60.0%
ACCTTGCTCCTGAGGGAGTG+AGG - chr4_3:24219374-24219393 Msa0635470:intron 60.0%
CCTTGCTCCTGAGGGAGTGA+GGG - chr4_3:24219375-24219394 Msa0635470:intron 60.0%
GGACTGAGCCAAGGCCCATT+TGG + chr4_3:24219577-24219596 None:intergenic 60.0%
TGCTCCGGATCTGGCAAGGT+TGG - chr4_3:24221821-24221840 Msa0635470:intron 60.0%
CCCTCACTCCCTCAGGAGCA+AGG + chr4_3:24219378-24219397 None:intergenic 65.0%
TGCTCCTGAGGGAGTGAGGG+AGG - chr4_3:24219378-24219397 Msa0635470:intron 65.0%
AGGACCTCCCTCACTCCCTC+AGG + chr4_3:24219385-24219404 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 24218059 24222976 24218059 ID=Msa0635470;Name=Msa0635470
chr4_3 mRNA 24218059 24222976 24218059 ID=Msa0635470-mRNA-1;Parent=Msa0635470;Name=Msa0635470-mRNA-1;_AED=0.24;_eAED=0.24;_QI=236|1|1|1|1|1|8|364|312
chr4_3 exon 24218059 24218500 24218059 ID=Msa0635470-mRNA-1:exon:6205;Parent=Msa0635470-mRNA-1
chr4_3 exon 24219197 24219333 24219197 ID=Msa0635470-mRNA-1:exon:6204;Parent=Msa0635470-mRNA-1
chr4_3 exon 24219585 24219712 24219585 ID=Msa0635470-mRNA-1:exon:6203;Parent=Msa0635470-mRNA-1
chr4_3 exon 24219948 24220024 24219948 ID=Msa0635470-mRNA-1:exon:6202;Parent=Msa0635470-mRNA-1
chr4_3 exon 24220729 24220815 24220729 ID=Msa0635470-mRNA-1:exon:6201;Parent=Msa0635470-mRNA-1
chr4_3 exon 24220916 24221032 24220916 ID=Msa0635470-mRNA-1:exon:6200;Parent=Msa0635470-mRNA-1
chr4_3 exon 24222343 24222457 24222343 ID=Msa0635470-mRNA-1:exon:6199;Parent=Msa0635470-mRNA-1
chr4_3 exon 24222541 24222976 24222541 ID=Msa0635470-mRNA-1:exon:6198;Parent=Msa0635470-mRNA-1
chr4_3 five_prime_UTR 24222741 24222976 24222741 ID=Msa0635470-mRNA-1:five_prime_utr;Parent=Msa0635470-mRNA-1
chr4_3 CDS 24222541 24222740 24222541 ID=Msa0635470-mRNA-1:cds;Parent=Msa0635470-mRNA-1
chr4_3 CDS 24222343 24222457 24222343 ID=Msa0635470-mRNA-1:cds;Parent=Msa0635470-mRNA-1
chr4_3 CDS 24220916 24221032 24220916 ID=Msa0635470-mRNA-1:cds;Parent=Msa0635470-mRNA-1
chr4_3 CDS 24220729 24220815 24220729 ID=Msa0635470-mRNA-1:cds;Parent=Msa0635470-mRNA-1
chr4_3 CDS 24219948 24220024 24219948 ID=Msa0635470-mRNA-1:cds;Parent=Msa0635470-mRNA-1
chr4_3 CDS 24219585 24219712 24219585 ID=Msa0635470-mRNA-1:cds;Parent=Msa0635470-mRNA-1
chr4_3 CDS 24219197 24219333 24219197 ID=Msa0635470-mRNA-1:cds;Parent=Msa0635470-mRNA-1
chr4_3 CDS 24218423 24218500 24218423 ID=Msa0635470-mRNA-1:cds;Parent=Msa0635470-mRNA-1
chr4_3 three_prime_UTR 24218059 24218422 24218059 ID=Msa0635470-mRNA-1:three_prime_utr;Parent=Msa0635470-mRNA-1
Gene Sequence

>Msa0635470

ATGTTGTGTTTGGGTGTAGTTGGTGGGTCCACAACATGTCTTCAACTAAACAACACCAAAAGATTCATTCATCTAAATAATAAGAAAAACAGTTTCAATAAGAGGTGGCGTGTCATGGCACTTGAATTTGAATCAGACTCTTCTTCTTTTGCATCTTCTATTGATTCCTCTGATACCACCGATAAAAACTCTGCTACTGGGTTCTGTATTATAGAAGGACCTGAAACTGTACAAGATTTTGCTAAGATGGAACTTCAAGAAATTCAGGATAATATTCGGAGTCGAAGGAATAAGATTTTTTTACATATGGAAGAGGTTCGAAGGCTTAGAATACAGCAAAGAATTAAAAATGCTGAACTTGGAATTTTTAAAGAAGAGCAAGAGAATGAACTTCCTAATTTCCCATCATTCATTCCATTCTTGCCTCCTTTGACTTCAGCAAACCTCCGGCAGTATTATGCAACCTGTTTTTCTCTTATTAGCGGGATAATACTTTTTGGTGGTCTCCTTGCTCCGAGTCTGGAGCTTAAGCTTGGAATAGGTGGCACATCTTATGCAGATTTTATTCAAAATATGCATCTGCCTATGCAGTTGAGTCAGGTTGATCCTATTGTGGCATCATTCTCTGGTGGAGCTGTTGGTGTAATCTCTGCATTAATGGTTGTTGAGATAAACAATGTAAAACAACAGGAACAGAAAAGATGCAAATACTGTCTTGGTACTGGATATCTTGCATGTGCTCGATGTTCAAACACGGGAGCACTTGTCCTGATTGAACCGGTATCCTCCTTCAATGGTGGAGATCAGCCTTTATCACCACCAAAAACCGAGAGATGTTCAAATTGCTCCGGATCTGGCAAGGTCATGTGTCCAACATGTCTTTGCACCGGAATGGCTATGGCAAGCGAACATGATCCGCGAATTGATCCTTTTGATTAG

Protein sequence

>Msa0635470

MLCLGVVGGSTTCLQLNNTKRFIHLNNKKNSFNKRWRVMALEFESDSSSFASSIDSSDTTDKNSATGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGIFKEEQENELPNFPSFIPFLPPLTSANLRQYYATCFSLISGIILFGGLLAPSLELKLGIGGTSYADFIQNMHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEQKRCKYCLGTGYLACARCSNTGALVLIEPVSSFNGGDQPLSPPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD*