AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0973230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0973230 MtrunA17_Chr6g0452181 92.527 455 8 3 1 437 1 447 0.0 853
Msa0973230 MtrunA17_Chr8g0375751 45.763 354 165 7 62 413 58 386 4.99e-101 307
Msa0973230 MtrunA17_Chr1g0165011 42.932 382 197 8 45 413 45 418 1.73e-99 305
Msa0973230 MtrunA17_Chr6g0479511 41.954 348 194 6 65 410 47 388 5.33e-99 301
Msa0973230 MtrunA17_Chr7g0263111 46.647 343 148 6 64 406 89 396 1.16e-98 303
Msa0973230 MtrunA17_Chr8g0355021 48.718 273 132 3 148 416 204 472 8.34e-87 273
Msa0973230 MtrunA17_Chr8g0355021 39.423 104 57 2 37 140 39 136 1.29e-15 79.0
Msa0973230 MtrunA17_Chr1g0185281 50.800 250 114 4 166 411 283 527 7.95e-82 262
Msa0973230 MtrunA17_Chr1g0185281 57.333 75 30 1 62 136 90 162 1.92e-17 84.7
Msa0973230 MtrunA17_Chr8g0382571 50.602 249 114 3 164 408 206 449 7.37e-81 257
Msa0973230 MtrunA17_Chr8g0382571 52.055 73 33 1 64 136 39 109 7.80e-15 76.3
Msa0973230 MtrunA17_Chr7g0260081 52.697 241 105 4 169 405 286 521 1.50e-80 259
Msa0973230 MtrunA17_Chr7g0260081 59.722 72 27 1 65 136 93 162 6.49e-18 86.3
Msa0973230 MtrunA17_Chr5g0394901 51.210 248 112 4 162 405 345 587 9.63e-80 258
Msa0973230 MtrunA17_Chr5g0394901 42.017 119 62 2 23 136 48 164 4.60e-19 89.7
Msa0973230 MtrunA17_Chr1g0205121 50.391 256 110 5 162 405 298 548 1.46e-79 257
Msa0973230 MtrunA17_Chr1g0205121 54.118 85 37 1 52 136 80 162 3.82e-19 90.1
Msa0973230 MtrunA17_Chr5g0400311 47.471 257 127 6 151 406 349 598 1.24e-75 248
Msa0973230 MtrunA17_Chr5g0400311 43.210 81 44 1 59 139 101 179 7.79e-16 79.7
Msa0973230 MtrunA17_Chr4g0054941 49.580 238 114 4 170 406 309 541 2.65e-75 245
Msa0973230 MtrunA17_Chr4g0054941 41.667 96 52 3 59 153 68 160 1.25e-14 75.9
Msa0973230 MtrunA17_Chr4g0054951 48.571 245 120 4 163 406 302 541 5.35e-75 244
Msa0973230 MtrunA17_Chr4g0054951 41.975 81 45 1 59 139 71 149 1.67e-14 75.5
Msa0973230 MtrunA17_Chr1g0201271 47.348 264 126 8 168 426 368 623 1.13e-68 229
Msa0973230 MtrunA17_Chr1g0201271 47.115 104 51 3 34 135 70 171 3.55e-17 84.0
Msa0973230 MtrunA17_Chr6g0466801 48.980 245 116 6 168 411 366 602 1.56e-67 226
Msa0973230 MtrunA17_Chr6g0466801 51.948 77 35 1 59 135 93 167 2.62e-17 84.3
Msa0973230 MtrunA17_Chr1g0189231 27.320 388 191 11 64 404 527 870 2.19e-31 127
Msa0973230 MtrunA17_Chr1g0154491 26.437 348 180 13 60 398 47 327 3.72e-18 85.1
Msa0973230 MtrunA17_Chr6g0488541 33.333 156 80 5 278 414 807 957 2.34e-15 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0973230 AT2G37440.1 47.802 364 155 7 64 410 83 428 1.37e-108 329
Msa0973230 AT2G37440.3 47.802 364 155 7 64 410 83 428 1.37e-108 329
Msa0973230 AT2G37440.2 47.123 365 155 8 66 410 1 347 5.80e-105 317
Msa0973230 AT2G01900.1 42.450 351 182 6 65 413 59 391 8.18e-93 286
Msa0973230 AT2G01900.3 42.450 351 182 6 65 413 67 399 1.10e-92 286
Msa0973230 AT2G01900.2 41.595 351 176 7 65 413 59 382 1.15e-87 273
Msa0973230 AT5G65090.2 53.061 245 106 4 171 411 199 438 1.48e-85 270
Msa0973230 AT5G65090.2 45.205 73 38 1 63 135 9 79 7.05e-13 70.9
Msa0973230 AT5G65090.3 53.061 245 106 4 171 411 262 501 4.80e-85 270
Msa0973230 AT5G65090.3 45.205 73 38 1 63 135 72 142 8.81e-13 70.5
Msa0973230 AT5G65090.1 53.061 245 106 4 171 411 262 501 4.80e-85 270
Msa0973230 AT5G65090.1 45.205 73 38 1 63 135 72 142 8.81e-13 70.5
Msa0973230 AT3G63240.2 54.065 246 102 5 165 405 272 511 7.14e-84 267
Msa0973230 AT3G63240.2 34.524 168 97 5 37 200 63 221 1.56e-17 85.5
Msa0973230 AT3G63240.1 54.065 246 102 5 165 405 272 511 7.14e-84 267
Msa0973230 AT3G63240.1 34.524 168 97 5 37 200 63 221 1.56e-17 85.5
Msa0973230 AT2G32010.2 52.675 243 106 4 167 405 322 559 4.69e-83 266
Msa0973230 AT2G32010.2 64.789 71 23 1 66 136 93 161 1.21e-19 92.0
Msa0973230 AT2G32010.1 52.675 243 106 4 167 405 322 559 4.69e-83 266
Msa0973230 AT2G32010.1 64.789 71 23 1 66 136 93 161 1.21e-19 92.0
Msa0973230 AT2G32010.4 52.675 243 106 4 167 405 322 559 4.69e-83 266
Msa0973230 AT2G32010.4 64.789 71 23 1 66 136 93 161 1.21e-19 92.0
Msa0973230 AT2G32010.3 52.675 243 106 4 167 405 322 559 4.69e-83 266
Msa0973230 AT2G32010.3 64.789 71 23 1 66 136 93 161 1.21e-19 92.0
Msa0973230 AT1G05470.2 51.852 243 108 4 167 405 345 582 8.36e-81 261
Msa0973230 AT1G05470.2 59.494 79 30 1 59 137 87 163 6.29e-20 92.8
Msa0973230 AT1G05470.1 51.852 243 108 4 167 405 345 582 8.36e-81 261
Msa0973230 AT1G05470.1 59.494 79 30 1 59 137 87 163 6.29e-20 92.8
Msa0973230 AT5G04980.4 50.207 241 112 4 170 406 156 392 9.63e-79 250
Msa0973230 AT5G04980.2 50.207 241 112 4 170 406 220 456 6.12e-78 249
Msa0973230 AT5G04980.2 46.377 69 35 1 64 132 38 104 7.37e-11 64.3
Msa0973230 AT5G04980.1 50.207 241 112 4 170 406 191 427 6.58e-78 249
Msa0973230 AT5G04980.1 46.377 69 35 1 64 132 9 75 7.31e-11 64.3
Msa0973230 AT5G04980.3 50.207 241 112 4 170 406 191 427 6.58e-78 249
Msa0973230 AT5G04980.3 46.377 69 35 1 64 132 9 75 7.31e-11 64.3
Msa0973230 AT4G18010.1 48.133 241 119 4 167 406 385 620 4.24e-73 242
Msa0973230 AT4G18010.1 44.156 77 41 1 59 135 106 180 3.06e-15 78.6
Msa0973230 AT1G34120.5 44.604 278 139 9 142 411 148 418 9.96e-73 235
Msa0973230 AT1G34120.1 44.604 278 139 9 142 411 299 569 6.68e-71 234
Msa0973230 AT1G34120.1 51.948 77 35 1 59 135 96 170 8.54e-16 80.1
Msa0973230 AT1G34120.2 44.604 278 139 9 142 411 303 573 7.59e-71 234
Msa0973230 AT1G34120.2 51.948 77 35 1 59 135 100 174 8.59e-16 80.1
Msa0973230 AT1G34120.3 44.245 278 139 10 142 411 303 572 2.52e-68 228
Msa0973230 AT1G34120.3 51.948 77 35 1 59 135 100 174 8.81e-16 80.1
Msa0973230 AT1G71710.2 46.281 242 122 4 171 411 399 633 1.32e-67 227
Msa0973230 AT1G71710.2 46.753 77 39 1 59 135 114 188 1.52e-15 79.3
Msa0973230 AT1G71710.1 46.281 242 122 4 171 411 408 642 1.78e-67 227
Msa0973230 AT1G71710.1 46.753 77 39 1 59 135 123 197 1.49e-15 79.3
Msa0973230 AT4G18010.2 46.535 202 102 4 167 367 385 581 1.42e-54 191
Msa0973230 AT4G18010.2 44.156 77 41 1 59 135 106 180 2.85e-15 78.6
Msa0973230 AT1G34120.4 41.573 178 94 6 142 311 299 474 7.91e-36 138
Msa0973230 AT1G34120.4 51.948 77 35 1 59 135 96 170 6.84e-16 80.1
Msa0973230 AT2G43900.2 26.633 398 195 12 61 405 573 926 3.44e-34 136
Msa0973230 AT2G43900.1 26.633 398 195 12 61 405 573 926 4.43e-34 136
Msa0973230 AT1G05630.2 27.696 408 196 15 62 414 569 932 1.18e-33 134
Msa0973230 AT1G05630.3 28.940 349 167 12 62 373 569 873 6.65e-33 132
Msa0973230 AT2G31830.2 28.080 349 170 13 62 373 578 882 4.81e-32 130
Msa0973230 AT2G31830.1 28.080 349 170 13 62 373 578 882 5.84e-32 129
Msa0973230 AT2G31830.3 28.080 349 170 13 62 373 578 882 9.30e-32 129
Msa0973230 AT1G65580.2 27.735 393 188 13 64 404 272 620 1.37e-31 128
Msa0973230 AT1G65580.1 27.481 393 189 13 64 404 538 886 1.81e-31 128
Msa0973230 AT1G47510.4 31.507 219 115 9 188 398 72 263 3.29e-21 93.2
Msa0973230 AT1G47510.1 31.507 219 115 9 188 398 134 325 7.16e-21 93.6
Msa0973230 AT1G05630.1 33.974 156 79 6 278 414 816 966 3.08e-16 82.0
Msa0973230 AT1G47510.2 35.246 122 64 3 284 398 149 262 3.26e-13 70.1

Find 91 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCATGACTTATAAGATTT+TGG 0.148800 6_4:+5664526 None:intergenic
TTGAAGACCTCAACAGTAAT+AGG 0.217504 6_4:-5662952 Msa0973230:CDS
GTTGTAGCACATTTAGCTTC+TGG 0.239187 6_4:-5662577 Msa0973230:CDS
CATTTCCACAAGTTCTTTGC+TGG 0.241196 6_4:+5659739 None:intergenic
TAAGATTTGACTGTAGAATT+TGG 0.253750 6_4:-5659150 Msa0973230:three_prime_UTR
CACTTCTTCTTGTTTCTATA+AGG 0.279840 6_4:-5664720 Msa0973230:five_prime_UTR
TGTGGTGTTATGGGATATTT+AGG 0.280551 6_4:-5662655 Msa0973230:CDS
TTCAGTTGCATGTGGTGTTA+TGG 0.281058 6_4:-5662665 Msa0973230:CDS
TTCTTTCTTGTCATAGATAT+TGG 0.310079 6_4:-5664608 Msa0973230:five_prime_UTR
ACAAATTGGAACAATCTTAT+AGG 0.311233 6_4:-5662907 Msa0973230:CDS
TATGTAACAGTCGCATATTT+TGG 0.312136 6_4:-5660817 Msa0973230:intron
ATCCATCAGTGGCAACAAAT+TGG 0.315420 6_4:-5662921 Msa0973230:CDS
CAAGAAGAAGTGACAAAATA+AGG 0.315451 6_4:+5664731 None:intergenic
TCATGGCCTAAGATTGTTAG+AGG 0.356206 6_4:+5662466 None:intergenic
CATCATCCTCTAACAATCTT+AGG 0.357579 6_4:-5662472 Msa0973230:CDS
GGGAAGCTTAGCTGTTGATT+TGG 0.366330 6_4:-5663959 Msa0973230:CDS
TTGTAGCACATTTAGCTTCT+GGG 0.368059 6_4:-5662576 Msa0973230:CDS
TCAGTTGCATGTGGTGTTAT+GGG 0.377051 6_4:-5662664 Msa0973230:CDS
AAATCTTTCCTTTCAGTCAC+TGG 0.377531 6_4:-5664232 Msa0973230:CDS
TGAAGACCTCAACAGTAATA+GGG 0.381134 6_4:-5662951 Msa0973230:CDS
GTTGGTACTTGGAATGTTGC+TGG 0.407117 6_4:-5663994 Msa0973230:CDS
TTATTAGATGCCTAGCTAGA+TGG 0.410366 6_4:+5660759 None:intergenic
TTGGAGTATTCATAAGTGTT+TGG 0.411708 6_4:-5662738 Msa0973230:CDS
AGAAAGGTGATGAAGGTAGA+AGG 0.414224 6_4:-5662549 Msa0973230:CDS
TTAAGTTTGTATGAAATTGA+AGG 0.414336 6_4:-5664428 Msa0973230:intron
AAGATGAGTACTTATATGTT+GGG 0.424011 6_4:+5660633 None:intergenic
GAAGGATATGATATATATCA+AGG 0.425478 6_4:+5664548 None:intergenic
AAGATGAAATATGATTTGAT+AGG 0.443951 6_4:+5664680 None:intergenic
ATTTCATACAAACTTAATGA+TGG 0.452320 6_4:+5664434 None:intergenic
ATCTAATAAGAAAGCAAGAT+TGG 0.453124 6_4:-5660745 Msa0973230:CDS
TATCAAAACATTGGAGGAAG+TGG 0.455018 6_4:-5662805 Msa0973230:CDS
GCAGGTGTGATAGAATTCTA+TGG 0.456577 6_4:-5659868 Msa0973230:intron
TTCCAATTTGTTGCCACTGA+TGG 0.460598 6_4:+5662919 None:intergenic
CAAAATAAGGTAGCTTAAGA+TGG 0.462011 6_4:+5664744 None:intergenic
GAAGATGAGTACTTATATGT+TGG 0.474834 6_4:+5660632 None:intergenic
GATATAAGAGGCTATCCAAT+TGG 0.478067 6_4:-5664484 Msa0973230:CDS
TTCTGCCCCTATTACTGTTG+AGG 0.480423 6_4:+5662945 None:intergenic
TTGGTTAAAAGAACAAGTGT+TGG 0.481233 6_4:-5662719 Msa0973230:CDS
TTAGCTTCTGGGGAAAAGAA+AGG 0.481354 6_4:-5662565 Msa0973230:CDS
TCTGCAGATATATATGTTCT+CGG 0.485834 6_4:-5663913 Msa0973230:CDS
TTCCAAAATCTTATAAGTCA+TGG 0.487370 6_4:-5664528 Msa0973230:exon
GTAGAGAAGAGTGCTGAAAC+TGG 0.489823 6_4:+5659782 None:intergenic
AGCAATATCTATTGTGGTGG+TGG 0.490845 6_4:-5660605 Msa0973230:CDS
AGATGAGAGTGATGAATATG+AGG 0.493133 6_4:-5664256 Msa0973230:CDS
TTGGTTCACCACCAAACAAA+AGG 0.498272 6_4:-5664465 Msa0973230:CDS
GGTGGCCTTCCAACTAGATC+AGG 0.501700 6_4:-5660587 Msa0973230:CDS
AAGGTAGCTTAAGATGGAGT+TGG 0.506822 6_4:+5664750 None:intergenic
ATCAAATTCCAGTGACTGAA+AGG 0.510094 6_4:+5664224 None:intergenic
ATGGGATATTTAGGAAACAA+AGG 0.510358 6_4:-5662646 Msa0973230:CDS
GCTTCTGACTCGATTTGAGT+TGG 0.513316 6_4:+5659064 None:intergenic
CAAGAAAATTATCAAAACAT+TGG 0.513877 6_4:-5662814 Msa0973230:CDS
CTTCATTAACATTGAAAGTG+AGG 0.516557 6_4:+5659305 None:intergenic
AGAATTCTATGGTATGGTAA+AGG 0.528647 6_4:-5659857 Msa0973230:CDS
TGTGATAGAATTCTATGGTA+TGG 0.529314 6_4:-5659863 Msa0973230:CDS
AATAAGAAAGCAAGATTGGA+AGG 0.529530 6_4:-5660741 Msa0973230:CDS
GAAAATTATCAAAACATTGG+AGG 0.529937 6_4:-5662811 Msa0973230:CDS
ACAACAAATTTGAGTTCCCA+TGG 0.529948 6_4:-5662873 Msa0973230:CDS
CTGCAGATATATATGTTCTC+GGG 0.531854 6_4:-5663912 Msa0973230:intron
TTGTTTGGTGGTGAACCAAT+TGG 0.532362 6_4:+5664469 None:intergenic
TTTCTCCTGATCTAGTTGGA+AGG 0.532772 6_4:+5660582 None:intergenic
ATTGCTGTGGAGGCTGAAGA+TGG 0.538071 6_4:-5659119 Msa0973230:three_prime_UTR
TTAGGAAACAAAGGTTGTGT+GGG 0.539213 6_4:-5662637 Msa0973230:CDS
GGAGTTAGTATGTTGATTGA+AGG 0.544715 6_4:-5662616 Msa0973230:CDS
GGCAAGGATGAATTTAACAT+AGG 0.550454 6_4:+5662844 None:intergenic
TTTAGGAAACAAAGGTTGTG+TGG 0.554999 6_4:-5662638 Msa0973230:CDS
ATTACTGTTGAGGTCTTCAA+AGG 0.559244 6_4:+5662955 None:intergenic
GGGGAAAAGAAAGGTGATGA+AGG 0.566624 6_4:-5662556 Msa0973230:CDS
TTTGGTAAATACAATTGCTG+TGG 0.567914 6_4:-5659132 Msa0973230:three_prime_UTR
GCATTTCAACAAATAAGCTA+AGG 0.576448 6_4:-5664197 Msa0973230:intron
TCCACTAGCAATATCTATTG+TGG 0.577164 6_4:-5660611 Msa0973230:CDS
GGTAAATACAATTGCTGTGG+AGG 0.577701 6_4:-5659129 Msa0973230:three_prime_UTR
ACTTGAAAGACCATCTAGCT+AGG 0.579325 6_4:-5660769 Msa0973230:CDS
TAGTGTGTTTGTGACTTGCA+TGG 0.581411 6_4:-5664582 Msa0973230:five_prime_UTR
TTAACATAGGTGTTAACCAT+GGG 0.581644 6_4:+5662857 None:intergenic
TGTAGCACATTTAGCTTCTG+GGG 0.589661 6_4:-5662575 Msa0973230:CDS
TTTAACATAGGTGTTAACCA+TGG 0.603323 6_4:+5662856 None:intergenic
AGAGTTTGTTCAGTTGCATG+TGG 0.609478 6_4:-5662673 Msa0973230:CDS
TAGCTGTTGATTTGGATGAG+TGG 0.611111 6_4:-5663951 Msa0973230:CDS
GATGAGAGTGATGAATATGA+GGG 0.613097 6_4:-5664255 Msa0973230:CDS
GAAGACCTCAACAGTAATAG+GGG 0.617039 6_4:-5662950 Msa0973230:CDS
TGTTGCTGGAAGATCTCCTG+TGG 0.622172 6_4:-5663980 Msa0973230:CDS
TCAACAGCTAAGCTTCCCAC+AGG 0.622850 6_4:+5663964 None:intergenic
TTGAGCGTTGAACACAAGAG+AGG 0.623495 6_4:+5664777 None:intergenic
ATGTTAATGAAGAATGTACA+AGG 0.625047 6_4:-5659294 Msa0973230:CDS
AGATGAGTACTTATATGTTG+GGG 0.634547 6_4:+5660634 None:intergenic
AAGTGGTTACTATACCATGC+TGG 0.634633 6_4:+5660548 None:intergenic
ACTAGCAATATCTATTGTGG+TGG 0.637512 6_4:-5660608 Msa0973230:CDS
ACCACAATAGATATTGCTAG+TGG 0.647730 6_4:+5660610 None:intergenic
AAAAGCAAAGAACACCAGCA+TGG 0.661082 6_4:-5660562 Msa0973230:intron
GTTGCTGGAAGATCTCCTGT+GGG 0.696089 6_4:-5663979 Msa0973230:CDS
AGGGGCAGAAGATCCATCAG+TGG 0.708283 6_4:-5662932 Msa0973230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTTTTATAATATTA+TGG + chr6_4:5662527-5662546 None:intergenic 0.0%
!!! TACAATTTTTTTACATATAA+TGG + chr6_4:5659200-5659219 None:intergenic 10.0%
!! TAGAAAAAAAATATGTATAT+AGG - chr6_4:5659512-5659531 Msa0973230:intron 10.0%
!!! TTAGAAATTTTATAAAATAC+AGG - chr6_4:5660099-5660118 Msa0973230:intron 10.0%
!!! ATAAATCGAATTTTAATTAA+AGG + chr6_4:5660555-5660574 None:intergenic 10.0%
!!! AATTAAAATTCGATTTATTT+TGG - chr6_4:5660298-5660317 Msa0973230:intron 10.0%
!!! AATAAATCGAATTTTAATTA+AGG - chr6_4:5660554-5660573 Msa0973230:intron 10.0%
!!! ATAAATCGAATTTTAATTAA+GGG - chr6_4:5660555-5660574 Msa0973230:intron 10.0%
!!! ACAATTTAAAATTATTACAT+AGG - chr6_4:5660747-5660766 Msa0973230:CDS 10.0%
!! ACAACATTAATATTAATATA+AGG + chr6_4:5661423-5661442 None:intergenic 10.0%
!!! AAAAACTAAATTTTAGAAAT+GGG + chr6_4:5661613-5661632 None:intergenic 10.0%
!!! ATTGTTTTTTTTTTTTATGA+AGG - chr6_4:5661988-5662007 Msa0973230:intron 10.0%
!!! TTGTTTTTTTTTTTTATGAA+GGG - chr6_4:5661989-5662008 Msa0973230:intron 10.0%
!!! AATATTTTTAGGTTAAAAAA+TGG - chr6_4:5662117-5662136 Msa0973230:intron 10.0%
!!! ATATTTTTAGGTTAAAAAAT+GGG - chr6_4:5662118-5662137 Msa0973230:intron 10.0%
!!! TGTTTAAAATAATTTTTTCA+TGG - chr6_4:5663712-5663731 Msa0973230:intron 10.0%
!! TTAATATTATTGAAATTAGA+TGG + chr6_4:5663820-5663839 None:intergenic 10.0%
!!! TTTAGATTTAAATTTTAGAA+AGG - chr6_4:5664674-5664693 Msa0973230:five_prime_UTR 10.0%
!!! AGATTTATTTCTTAATCTAA+CGG + chr6_4:5660028-5660047 None:intergenic 15.0%
!!! TTTTATAAAATACAGGTTAA+TGG - chr6_4:5660106-5660125 Msa0973230:intron 15.0%
!! TTAAAATTATTACATAGGTT+TGG - chr6_4:5660752-5660771 Msa0973230:CDS 15.0%
!!! CAAAAACTAAATTTTAGAAA+TGG + chr6_4:5661614-5661633 None:intergenic 15.0%
!! CTATTTCACTTATATTAAAA+TGG - chr6_4:5661634-5661653 Msa0973230:intron 15.0%
!!! TTGTTATTGTTTTTTACAAA+GGG + chr6_4:5661708-5661727 None:intergenic 15.0%
!!! TTTGTTATTGTTTTTTACAA+AGG + chr6_4:5661709-5661728 None:intergenic 15.0%
!!! TAACAACCAAATTTTAAAAT+GGG - chr6_4:5662158-5662177 Msa0973230:intron 15.0%
!! ATCAACTTTGTAAAATTAAT+TGG + chr6_4:5662186-5662205 None:intergenic 15.0%
!!! TTTTTCATACGTAAAAATTA+GGG + chr6_4:5662736-5662755 None:intergenic 15.0%
!!! TTTTTTCATACGTAAAAATT+AGG + chr6_4:5662737-5662756 None:intergenic 15.0%
!!! CTTTTTTCTTTGTTAATTAT+AGG - chr6_4:5663330-5663349 Msa0973230:intron 15.0%
!! AAAATATCAAGCTTAAAATA+TGG + chr6_4:5663464-5663483 None:intergenic 15.0%
!! TTAATATAGAAATTATGCAT+TGG - chr6_4:5664236-5664255 Msa0973230:CDS 15.0%
!! TAAATCTAAAAAAAGAATGT+TGG + chr6_4:5664664-5664683 None:intergenic 15.0%
!! AAGATGAAATATGATTTGAT+AGG + chr6_4:5659171-5659190 None:intergenic 20.0%
!! ATTTCATACAAACTTAATGA+TGG + chr6_4:5659417-5659436 None:intergenic 20.0%
!! TTAAGTTTGTATGAAATTGA+AGG - chr6_4:5659420-5659439 Msa0973230:intron 20.0%
!!! ATATTTTTCAGGATTTTTGT+TGG - chr6_4:5659836-5659855 Msa0973230:CDS 20.0%
!!! CGTTTTTGAATTAAAACTAA+CGG + chr6_4:5660490-5660509 None:intergenic 20.0%
!!! AGTTTTAATTCAAAAACGTT+AGG - chr6_4:5660363-5660382 Msa0973230:intron 20.0%
!!! TTTTCTTATGGAATTTTTCT+AGG - chr6_4:5660395-5660414 Msa0973230:intron 20.0%
!!! CGTTTTTGAATTAAAACTAA+CGG - chr6_4:5660490-5660509 Msa0973230:intron 20.0%
!! TAGTACTACATAAATAGTTA+AGG - chr6_4:5660588-5660607 Msa0973230:CDS 20.0%
!! AGTACTACATAAATAGTTAA+GGG - chr6_4:5660589-5660608 Msa0973230:CDS 20.0%
!!! TTATTCTTTTAATTAGTGTG+AGG - chr6_4:5660829-5660848 Msa0973230:intron 20.0%
!!! TGATAATTTTCTTGATCATT+TGG + chr6_4:5661028-5661047 None:intergenic 20.0%
!! CAAGAAAATTATCAAAACAT+TGG - chr6_4:5661034-5661053 Msa0973230:intron 20.0%
!!! ATCAAGTTGAAGAAATTTTT+AGG - chr6_4:5661326-5661345 Msa0973230:intron 20.0%
!!! TTTTTCTTGTTTATGATGAT+TGG - chr6_4:5661469-5661488 Msa0973230:intron 20.0%
!!! TTTCGAAGTGAATTTTTAAT+AGG + chr6_4:5662063-5662082 None:intergenic 20.0%
!!! CTAACAACCAAATTTTAAAA+TGG - chr6_4:5662157-5662176 Msa0973230:intron 20.0%
!!! AACAACCAAATTTTAAAATG+GGG - chr6_4:5662159-5662178 Msa0973230:intron 20.0%
!!! ATTAATTTTAAGAACGAACT+AGG + chr6_4:5662568-5662587 None:intergenic 20.0%
!! ATTAATAGTAAACATGTCTA+AGG + chr6_4:5662591-5662610 None:intergenic 20.0%
!! AAATGTTATATGGTAGAATT+TGG + chr6_4:5662656-5662675 None:intergenic 20.0%
!!! TTTTAGACAGAAATGTTATA+TGG + chr6_4:5662666-5662685 None:intergenic 20.0%
!!! ATAACATTTCTGTCTAAAAT+TGG - chr6_4:5662667-5662686 Msa0973230:CDS 20.0%
!!! TAAAATTGGTTTTAATGGTA+AGG - chr6_4:5662681-5662700 Msa0973230:CDS 20.0%
!!! AAAATTGGTTTTAATGGTAA+GGG - chr6_4:5662682-5662701 Msa0973230:CDS 20.0%
!!! TTTTACGTATGAAAAAATTC+CGG - chr6_4:5662740-5662759 Msa0973230:CDS 20.0%
!! AAAGTCTATTTCATATTTGT+AGG - chr6_4:5662854-5662873 Msa0973230:CDS 20.0%
!!! GTTAACAACTGTAATTTTTT+TGG - chr6_4:5663623-5663642 Msa0973230:intron 20.0%
!!! GTAAAACATTTTTACATTGT+TGG + chr6_4:5663793-5663812 None:intergenic 20.0%
!!! ATTATTGTAGAGTTTTTTTG+AGG - chr6_4:5663894-5663913 Msa0973230:intron 20.0%
!!! TTATTGTAGAGTTTTTTTGA+GGG - chr6_4:5663895-5663914 Msa0973230:intron 20.0%
!! TGTTGTGTATATTAAGAAAA+TGG - chr6_4:5664173-5664192 Msa0973230:intron 20.0%
!! GTTGTGTATATTAAGAAAAT+GGG - chr6_4:5664174-5664193 Msa0973230:intron 20.0%
!! TAGAAAAATGACAAAAGAAT+TGG - chr6_4:5664627-5664646 Msa0973230:five_prime_UTR 20.0%
!!! AAAAAAGAATGTTGGATTTT+AGG + chr6_4:5664656-5664675 None:intergenic 20.0%
! TTCTTTCTTGTCATAGATAT+TGG - chr6_4:5659240-5659259 Msa0973230:three_prime_UTR 25.0%
! GAAGGATATGATATATATCA+AGG + chr6_4:5659303-5659322 None:intergenic 25.0%
!! ATGACTTATAAGATTTTGGA+AGG + chr6_4:5659321-5659340 None:intergenic 25.0%
! TTCCAAAATCTTATAAGTCA+TGG - chr6_4:5659320-5659339 Msa0973230:CDS 25.0%
! ACCAAAAATCAAGATATAAG+AGG - chr6_4:5659352-5659371 Msa0973230:intron 25.0%
!! TTTAGGCTAAATTGCATTTT+TGG - chr6_4:5660238-5660257 Msa0973230:intron 25.0%
! GATACTACCTAAATAGTTAA+GGG + chr6_4:5660265-5660284 None:intergenic 25.0%
! TTGAATTAAAACTAACGGAA+AGG + chr6_4:5660495-5660514 None:intergenic 25.0%
!! AGGTTTTCTTCATTTTCTTA+TGG - chr6_4:5660383-5660402 Msa0973230:intron 25.0%
!!! TTCTTGTTGTTAAAGGTTTA+TGG - chr6_4:5660419-5660438 Msa0973230:intron 25.0%
! ATGATATGAAGATGAAAAAG+AGG - chr6_4:5660444-5660463 Msa0973230:intron 25.0%
! TTGAATTAAAACTAACGGAA+AGG - chr6_4:5660495-5660514 Msa0973230:intron 25.0%
!! AAAAACGTAGACGATTTTAT+TGG + chr6_4:5660791-5660810 None:intergenic 25.0%
! ACAAATTGGAACAATCTTAT+AGG - chr6_4:5660941-5660960 Msa0973230:intron 25.0%
! GAAAATTATCAAAACATTGG+AGG - chr6_4:5661037-5661056 Msa0973230:intron 25.0%
! TAAACAAGAAAAAACACAGA+GGG + chr6_4:5661462-5661481 None:intergenic 25.0%
! ATAAACAAGAAAAAACACAG+AGG + chr6_4:5661463-5661482 None:intergenic 25.0%
!!! AACTGCAACAAGTTTTTTTA+CGG + chr6_4:5661554-5661573 None:intergenic 25.0%
!!! AAAAAAACTTGTTGCAGTTT+TGG - chr6_4:5661555-5661574 Msa0973230:intron 25.0%
! ATCGTAAACTAGTGAAAATA+TGG + chr6_4:5661584-5661603 None:intergenic 25.0%
!!! TTTTCACTAGTTTACGATAT+TGG - chr6_4:5661586-5661605 Msa0973230:intron 25.0%
! ATAAAGTGATCGATCAAAAT+TGG + chr6_4:5661777-5661796 None:intergenic 25.0%
!! GATCGATCACTTTATTTATT+AGG - chr6_4:5661782-5661801 Msa0973230:intron 25.0%
!! ATTAGGCTTAATTGCAATTT+TGG - chr6_4:5661799-5661818 Msa0973230:intron 25.0%
!! TGTGACTTTCTATTTTCTTA+GGG + chr6_4:5661858-5661877 None:intergenic 25.0%
!! CTTGTCAAGTCAATATTTTT+AGG - chr6_4:5662106-5662125 Msa0973230:intron 25.0%
!!! TTTCAAGTTTAGTCTTTCTT+AGG - chr6_4:5662268-5662287 Msa0973230:intron 25.0%
! CTTTAGCATGAAACATTATT+TGG + chr6_4:5662484-5662503 None:intergenic 25.0%
! CAAATAATGTTTCATGCTAA+AGG - chr6_4:5662482-5662501 Msa0973230:CDS 25.0%
!!! CTGTCTAAAATTGGTTTTAA+TGG - chr6_4:5662676-5662695 Msa0973230:CDS 25.0%
!! AATTTTTATCGATGATCTGT+TGG + chr6_4:5662794-5662813 None:intergenic 25.0%
! ATCTAATAAGAAAGCAAGAT+TGG - chr6_4:5663103-5663122 Msa0973230:intron 25.0%
! AAGATGAGTACTTATATGTT+GGG + chr6_4:5663218-5663237 None:intergenic 25.0%
!! AAGAAAAAAGTATAAGCAAG+TGG + chr6_4:5663320-5663339 None:intergenic 25.0%
! TTAATTATAGGCCATGAATT+AGG - chr6_4:5663342-5663361 Msa0973230:intron 25.0%
! TAATTATAGGCCATGAATTA+GGG - chr6_4:5663343-5663362 Msa0973230:intron 25.0%
! TTCATGGAATTAATTATGTG+TGG - chr6_4:5663728-5663747 Msa0973230:intron 25.0%
! AGAAATTATGCATTGGAAAT+TGG - chr6_4:5664243-5664262 Msa0973230:CDS 25.0%
!! CATTGTCCTTAATTTTCTTA+GGG + chr6_4:5664378-5664397 None:intergenic 25.0%
!! TCATTGTCCTTAATTTTCTT+AGG + chr6_4:5664379-5664398 None:intergenic 25.0%
!!! TTCTTCAAGTTTTTCGAAAT+TGG - chr6_4:5664452-5664471 Msa0973230:CDS 25.0%
!! TTTTCGAAATTGGTATTCTA+AGG - chr6_4:5664462-5664481 Msa0973230:CDS 25.0%
! ATGTTTCATGTTATTATTGC+AGG - chr6_4:5664487-5664506 Msa0973230:CDS 25.0%
! TGTTTCATGTTATTATTGCA+GGG - chr6_4:5664488-5664507 Msa0973230:CDS 25.0%
! ATGTTAATGAAGAATGTACA+AGG - chr6_4:5664554-5664573 Msa0973230:five_prime_UTR 25.0%
! TAAGATTTGACTGTAGAATT+TGG - chr6_4:5664698-5664717 Msa0973230:five_prime_UTR 25.0%
CAAAATAAGGTAGCTTAAGA+TGG + chr6_4:5659107-5659126 None:intergenic 30.0%
CAAGAAGAAGTGACAAAATA+AGG + chr6_4:5659120-5659139 None:intergenic 30.0%
!! CACTTCTTCTTGTTTCTATA+AGG - chr6_4:5659128-5659147 Msa0973230:three_prime_UTR 30.0%
! CTCCATGACTTATAAGATTT+TGG + chr6_4:5659325-5659344 None:intergenic 30.0%
! GCCTCTTATATCTTGATTTT+TGG + chr6_4:5659356-5659375 None:intergenic 30.0%
!! CTTATTTTCCTTTTGTTTGG+TGG + chr6_4:5659394-5659413 None:intergenic 30.0%
!! TGGCTTATTTTCCTTTTGTT+TGG + chr6_4:5659397-5659416 None:intergenic 30.0%
GCATTTCAACAAATAAGCTA+AGG - chr6_4:5659651-5659670 Msa0973230:intron 30.0%
TTCTGTGATATGTGTTTATG+TGG - chr6_4:5659807-5659826 Msa0973230:CDS 30.0%
TCTGCAGATATATATGTTCT+CGG - chr6_4:5659935-5659954 Msa0973230:intron 30.0%
! GTAAAGGCTTCAAAGTTTTT+AGG - chr6_4:5660221-5660240 Msa0973230:intron 30.0%
! TTTTGGTCCCTTAACTATTT+AGG - chr6_4:5660255-5660274 Msa0973230:intron 30.0%
CGATACTACCTAAATAGTTA+AGG + chr6_4:5660266-5660285 None:intergenic 30.0%
!! TCTAGGATTCTTGTTGTTAA+AGG - chr6_4:5660412-5660431 Msa0973230:intron 30.0%
TTTATGTAGTACTATCGCTT+TGG + chr6_4:5660582-5660601 None:intergenic 30.0%
! ACTTGGCTAAATTGCATTTT+TGG + chr6_4:5660616-5660635 None:intergenic 30.0%
TAATTAGTGTGAGGAATGAA+AGG - chr6_4:5660838-5660857 Msa0973230:intron 30.0%
! GAAAGGCTTATCAAATTTTC+AGG - chr6_4:5660855-5660874 Msa0973230:intron 30.0%
TTAACATAGGTGTTAACCAT+GGG + chr6_4:5660994-5661013 None:intergenic 30.0%
TTTAACATAGGTGTTAACCA+TGG + chr6_4:5660995-5661014 None:intergenic 30.0%
! ATTTTCTTGATCATTTGGCA+AGG + chr6_4:5661023-5661042 None:intergenic 30.0%
!!! CATCTTGTACTTGTTTTTGT+TGG + chr6_4:5661071-5661090 None:intergenic 30.0%
CAACAAAAACAAGTACAAGA+TGG - chr6_4:5661069-5661088 Msa0973230:intron 30.0%
GATGGTAGCTAGTAAAAAAA+TGG - chr6_4:5661087-5661106 Msa0973230:intron 30.0%
GTAGCTAGTAAAAAAATGGT+TGG - chr6_4:5661091-5661110 Msa0973230:intron 30.0%
! TTGGAGTATTCATAAGTGTT+TGG - chr6_4:5661110-5661129 Msa0973230:intron 30.0%
TTGGTTAAAAGAACAAGTGT+TGG - chr6_4:5661129-5661148 Msa0973230:intron 30.0%
ATGGGATATTTAGGAAACAA+AGG - chr6_4:5661202-5661221 Msa0973230:intron 30.0%
TGCAAAAGGAGATAAACTTA+GGG + chr6_4:5661738-5661757 None:intergenic 30.0%
! TGACTTTCTATTTTCTTAGG+GGG + chr6_4:5661856-5661875 None:intergenic 30.0%
! GTGACTTTCTATTTTCTTAG+GGG + chr6_4:5661857-5661876 None:intergenic 30.0%
! GTGTGACTTTCTATTTTCTT+AGG + chr6_4:5661859-5661878 None:intergenic 30.0%
GTATCACAATCTTGTGATAT+TGG + chr6_4:5662015-5662034 None:intergenic 30.0%
ATCACAAGATTGTGATACTT+AGG - chr6_4:5662017-5662036 Msa0973230:intron 30.0%
! TTTAGGTTAAAAAATGGGAG+TGG - chr6_4:5662123-5662142 Msa0973230:intron 30.0%
TTAGGTTAAAAAATGGGAGT+GGG - chr6_4:5662124-5662143 Msa0973230:intron 30.0%
!!! TTGGTCCCCATTTTAAAATT+TGG + chr6_4:5662167-5662186 None:intergenic 30.0%
! ATATCTAATTTGCATGGACT+TGG + chr6_4:5662328-5662347 None:intergenic 30.0%
AAGTCCATGCAAATTAGATA+TGG - chr6_4:5662327-5662346 Msa0973230:intron 30.0%
! CAAACCATATCTAATTTGCA+TGG + chr6_4:5662334-5662353 None:intergenic 30.0%
! AAATGTGTTACTCAATATGG+GGG + chr6_4:5662394-5662413 None:intergenic 30.0%
! GAAATGTGTTACTCAATATG+GGG + chr6_4:5662395-5662414 None:intergenic 30.0%
! CGAAATGTGTTACTCAATAT+GGG + chr6_4:5662396-5662415 None:intergenic 30.0%
CCATATTGAGTAACACATTT+CGG - chr6_4:5662394-5662413 Msa0973230:intron 30.0%
CATATTGAGTAACACATTTC+GGG - chr6_4:5662395-5662414 Msa0973230:intron 30.0%
ATGAAAAAATTCCGGTTGAA+AGG - chr6_4:5662748-5662767 Msa0973230:CDS 30.0%
! TATGTAACAGTCGCATATTT+TGG - chr6_4:5663031-5663050 Msa0973230:intron 30.0%
AATAAGAAAGCAAGATTGGA+AGG - chr6_4:5663107-5663126 Msa0973230:intron 30.0%
AGATGAGTACTTATATGTTG+GGG + chr6_4:5663217-5663236 None:intergenic 30.0%
GAAGATGAGTACTTATATGT+TGG + chr6_4:5663219-5663238 None:intergenic 30.0%
CAATTCAAATCCCTAATTCA+TGG + chr6_4:5663356-5663375 None:intergenic 30.0%
TTAGGGATTTGAATTGTCTA+TGG - chr6_4:5663360-5663379 Msa0973230:intron 30.0%
!! TCAGACGGTCTATATTTTAA+CGG - chr6_4:5663437-5663456 Msa0973230:intron 30.0%
AATCCAAATCTATGTAGTAG+AGG - chr6_4:5663585-5663604 Msa0973230:intron 30.0%
ATCCAAATCTATGTAGTAGA+GGG - chr6_4:5663586-5663605 Msa0973230:intron 30.0%
AACTAACAACATTCCTTTGA+TGG - chr6_4:5663956-5663975 Msa0973230:CDS 30.0%
ACTAACAACATTCCTTTGAT+GGG - chr6_4:5663957-5663976 Msa0973230:CDS 30.0%
TGTGATAGAATTCTATGGTA+TGG - chr6_4:5663985-5664004 Msa0973230:CDS 30.0%
AGAATTCTATGGTATGGTAA+AGG - chr6_4:5663991-5664010 Msa0973230:CDS 30.0%
TGATTGGATTGCAAAATTGT+TGG + chr6_4:5664147-5664166 None:intergenic 30.0%
ATACACAACACTTACATGAT+TGG + chr6_4:5664163-5664182 None:intergenic 30.0%
ACATTCTTAACTATTGCCTT+AGG - chr6_4:5664336-5664355 Msa0973230:intron 30.0%
! TTTTGCTAACTAGTATCCTA+AGG + chr6_4:5664355-5664374 None:intergenic 30.0%
GCAAAACCCTAAGAAAATTA+AGG - chr6_4:5664369-5664388 Msa0973230:intron 30.0%
GTTTCATGTTATTATTGCAG+GGG - chr6_4:5664489-5664508 Msa0973230:CDS 30.0%
TTTCATGTTATTATTGCAGG+GGG - chr6_4:5664490-5664509 Msa0973230:CDS 30.0%
CTTCATTAACATTGAAAGTG+AGG + chr6_4:5664546-5664565 None:intergenic 30.0%
TTTGGTAAATACAATTGCTG+TGG - chr6_4:5664716-5664735 Msa0973230:five_prime_UTR 30.0%
GATATAAGAGGCTATCCAAT+TGG - chr6_4:5659364-5659383 Msa0973230:intron 35.0%
AGATGAGAGTGATGAATATG+AGG - chr6_4:5659592-5659611 Msa0973230:intron 35.0%
GATGAGAGTGATGAATATGA+GGG - chr6_4:5659593-5659612 Msa0973230:intron 35.0%
AAATCTTTCCTTTCAGTCAC+TGG - chr6_4:5659616-5659635 Msa0973230:intron 35.0%
ATCAAATTCCAGTGACTGAA+AGG + chr6_4:5659627-5659646 None:intergenic 35.0%
! TGTGGCTAAGCATATTTTTC+AGG - chr6_4:5659825-5659844 Msa0973230:CDS 35.0%
! TCAGGATTTTTGTTGGTACT+TGG - chr6_4:5659843-5659862 Msa0973230:CDS 35.0%
CTGCAGATATATATGTTCTC+GGG - chr6_4:5659936-5659955 Msa0973230:intron 35.0%
TTAATCTAACGGCCTACAAT+CGG + chr6_4:5660017-5660036 None:intergenic 35.0%
!!! GGACTCGTAGTTTTAAATTG+CGG - chr6_4:5660127-5660146 Msa0973230:intron 35.0%
CTATTTAGGTAGTATCGCTT+TGG - chr6_4:5660269-5660288 Msa0973230:intron 35.0%
GAAAGGACCAAAATGTGTAA+CGG + chr6_4:5660512-5660531 None:intergenic 35.0%
GAAAGGACCAAAATGTGTAA+CGG - chr6_4:5660512-5660531 Msa0973230:intron 35.0%
TTTGTCTACAACCTCAATTG+TGG + chr6_4:5660652-5660671 None:intergenic 35.0%
TTTATGTTGCAACCGTAACT+AGG - chr6_4:5660714-5660733 Msa0973230:CDS 35.0%
TTATGTTGCAACCGTAACTA+GGG - chr6_4:5660715-5660734 Msa0973230:CDS 35.0%
ATTACTGTTGAGGTCTTCAA+AGG + chr6_4:5660896-5660915 None:intergenic 35.0%
TTGAAGACCTCAACAGTAAT+AGG - chr6_4:5660896-5660915 Msa0973230:intron 35.0%
TGAAGACCTCAACAGTAATA+GGG - chr6_4:5660897-5660916 Msa0973230:intron 35.0%
! ACAACAAATTTGAGTTCCCA+TGG - chr6_4:5660975-5660994 Msa0973230:intron 35.0%
GGCAAGGATGAATTTAACAT+AGG + chr6_4:5661007-5661026 None:intergenic 35.0%
TATCAAAACATTGGAGGAAG+TGG - chr6_4:5661043-5661062 Msa0973230:intron 35.0%
!! TGTGGTGTTATGGGATATTT+AGG - chr6_4:5661193-5661212 Msa0973230:intron 35.0%
TTTAGGAAACAAAGGTTGTG+TGG - chr6_4:5661210-5661229 Msa0973230:intron 35.0%
TTAGGAAACAAAGGTTGTGT+GGG - chr6_4:5661211-5661230 Msa0973230:intron 35.0%
! GGAGTTAGTATGTTGATTGA+AGG - chr6_4:5661232-5661251 Msa0973230:intron 35.0%
! TTGTAGCACATTTAGCTTCT+GGG - chr6_4:5661272-5661291 Msa0973230:intron 35.0%
! TTAGGAGAACATCTTTTCCT+AGG - chr6_4:5661344-5661363 Msa0973230:intron 35.0%
! TGTTAGAGGATGATGTTTTG+TGG + chr6_4:5661371-5661390 None:intergenic 35.0%
CATCATCCTCTAACAATCTT+AGG - chr6_4:5661376-5661395 Msa0973230:intron 35.0%
ATCGCAAAATTGTGGTACTT+AGG + chr6_4:5661680-5661699 None:intergenic 35.0%
CAAAAGGAGATAAACTTAGG+GGG + chr6_4:5661736-5661755 None:intergenic 35.0%
GCAAAAGGAGATAAACTTAG+GGG + chr6_4:5661737-5661756 None:intergenic 35.0%
GTGCAAAAGGAGATAAACTT+AGG + chr6_4:5661739-5661758 None:intergenic 35.0%
CGCAAGATTGTGATACTTAA+GGG + chr6_4:5661826-5661845 None:intergenic 35.0%
TCGCAAGATTGTGATACTTA+AGG + chr6_4:5661827-5661846 None:intergenic 35.0%
! GTATCACAATCTTGCGATTT+TGG - chr6_4:5661830-5661849 Msa0973230:intron 35.0%
AGAAAATAGAAAGTCACACG+TGG - chr6_4:5661860-5661879 Msa0973230:intron 35.0%
!! GTGTTAAGTATGCATTGACT+TGG - chr6_4:5661905-5661924 Msa0973230:intron 35.0%
!! TGCATTGACTTGGTCAAAAT+TGG - chr6_4:5661915-5661934 Msa0973230:intron 35.0%
! TTTACTCCCTTTTGCACTTT+TGG + chr6_4:5661949-5661968 None:intergenic 35.0%
CAAAAGGGAGTAAACTTAGA+GGG - chr6_4:5661955-5661974 Msa0973230:intron 35.0%
TAAAAAATGGGAGTGGGAAT+TGG - chr6_4:5662130-5662149 Msa0973230:intron 35.0%
AATTAACTGCACTGCTATGT+TGG + chr6_4:5662241-5662260 None:intergenic 35.0%
ACATAGCAGTGCAGTTAATT+CGG - chr6_4:5662241-5662260 Msa0973230:intron 35.0%
! TTTAGTCTTTCTTAGGTAGC+AGG - chr6_4:5662275-5662294 Msa0973230:intron 35.0%
AATTTGCATGGACTTGGATT+TGG + chr6_4:5662322-5662341 None:intergenic 35.0%
! AATGTGTTACTCAATATGGG+GGG + chr6_4:5662393-5662412 None:intergenic 35.0%
! CCGAAATGTGTTACTCAATA+TGG + chr6_4:5662397-5662416 None:intergenic 35.0%
! TTATACTAGAGTACTAGGCT+AGG + chr6_4:5662459-5662478 None:intergenic 35.0%
! TGGACTTATACTAGAGTACT+AGG + chr6_4:5662464-5662483 None:intergenic 35.0%
GATGATCTGTTGGACATATA+AGG + chr6_4:5662784-5662803 None:intergenic 35.0%
!!! AACAGTCGCATATTTTGGTT+TGG - chr6_4:5663036-5663055 Msa0973230:intron 35.0%
!!! ACAGTCGCATATTTTGGTTT+GGG - chr6_4:5663037-5663056 Msa0973230:intron 35.0%
TTATTAGATGCCTAGCTAGA+TGG + chr6_4:5663092-5663111 None:intergenic 35.0%
CTTCAAAAAGAGTTAGCAGA+AGG - chr6_4:5663150-5663169 Msa0973230:intron 35.0%
TCCACTAGCAATATCTATTG+TGG - chr6_4:5663237-5663256 Msa0973230:intron 35.0%
ACCACAATAGATATTGCTAG+TGG + chr6_4:5663241-5663260 None:intergenic 35.0%
ACTAGCAATATCTATTGTGG+TGG - chr6_4:5663240-5663259 Msa0973230:intron 35.0%
TACCCTCTACTACATAGATT+TGG + chr6_4:5663591-5663610 None:intergenic 35.0%
CTAACAACATTCCTTTGATG+GGG - chr6_4:5663958-5663977 Msa0973230:CDS 35.0%
TGGATTGCAAAATTGTTGGA+GGG + chr6_4:5664143-5664162 None:intergenic 35.0%
TTGGATTGCAAAATTGTTGG+AGG + chr6_4:5664144-5664163 None:intergenic 35.0%
CTTCTTAATTAGTGCCCTTA+GGG + chr6_4:5664215-5664234 None:intergenic 35.0%
TCTTCTTAATTAGTGCCCTT+AGG + chr6_4:5664216-5664235 None:intergenic 35.0%
CATTGGAAATTGGTGAAAAG+TGG - chr6_4:5664253-5664272 Msa0973230:CDS 35.0%
AAGGTAGCTTAAGATGGAGT+TGG + chr6_4:5659101-5659120 None:intergenic 40.0%
! TAGTGTGTTTGTGACTTGCA+TGG - chr6_4:5659266-5659285 Msa0973230:three_prime_UTR 40.0%
!! TTGTTTGGTGGTGAACCAAT+TGG + chr6_4:5659382-5659401 None:intergenic 40.0%
TTGGTTCACCACCAAACAAA+AGG - chr6_4:5659383-5659402 Msa0973230:intron 40.0%
!! TAGCTGTTGATTTGGATGAG+TGG - chr6_4:5659897-5659916 Msa0973230:intron 40.0%
ATACTTAGATTCTCCGCAGT+CGG - chr6_4:5659968-5659987 Msa0973230:intron 40.0%
! CAGTTGCGATCAAGTTGTAA+AGG - chr6_4:5660205-5660224 Msa0973230:intron 40.0%
! GTGTAACGGAGAGAAGTTAA+GGG + chr6_4:5660526-5660545 None:intergenic 40.0%
! TGTGTAACGGAGAGAAGTTA+AGG + chr6_4:5660525-5660544 None:intergenic 40.0%
! CTTCTCTCCGTTACACATTT+TGG - chr6_4:5660329-5660348 Msa0973230:intron 40.0%
! CTTCTCTCCGTTACACATTT+TGG + chr6_4:5660329-5660348 None:intergenic 40.0%
! TGTGTAACGGAGAGAAGTTA+AGG - chr6_4:5660525-5660544 Msa0973230:intron 40.0%
! GTGTAACGGAGAGAAGTTAA+GGG - chr6_4:5660526-5660545 Msa0973230:intron 40.0%
GTGGTTGGAGCATAAAAACT+TGG + chr6_4:5660633-5660652 None:intergenic 40.0%
TTATGCTCCAACCACAATTG+AGG - chr6_4:5660638-5660657 Msa0973230:CDS 40.0%
TCTACAACCTCAATTGTGGT+TGG + chr6_4:5660648-5660667 None:intergenic 40.0%
TTGTAACGAGATTGCAGGTT+TGG + chr6_4:5660680-5660699 None:intergenic 40.0%
AGTCTTTGTAACGAGATTGC+AGG + chr6_4:5660685-5660704 None:intergenic 40.0%
!! ATTTTATTGGCCTCCGAGTA+GGG + chr6_4:5660778-5660797 None:intergenic 40.0%
GAAGACCTCAACAGTAATAG+GGG - chr6_4:5660898-5660917 Msa0973230:intron 40.0%
ATCCATCAGTGGCAACAAAT+TGG - chr6_4:5660927-5660946 Msa0973230:intron 40.0%
!! TTCCAATTTGTTGCCACTGA+TGG + chr6_4:5660932-5660951 None:intergenic 40.0%
! AGAGTTTGTTCAGTTGCATG+TGG - chr6_4:5661175-5661194 Msa0973230:intron 40.0%
! TTCAGTTGCATGTGGTGTTA+TGG - chr6_4:5661183-5661202 Msa0973230:intron 40.0%
!! TCAGTTGCATGTGGTGTTAT+GGG - chr6_4:5661184-5661203 Msa0973230:intron 40.0%
! GTTGTAGCACATTTAGCTTC+TGG - chr6_4:5661271-5661290 Msa0973230:intron 40.0%
! TGTAGCACATTTAGCTTCTG+GGG - chr6_4:5661273-5661292 Msa0973230:intron 40.0%
! TTAGCTTCTGGGGAAAAGAA+AGG - chr6_4:5661283-5661302 Msa0973230:intron 40.0%
AGAAAGGTGATGAAGGTAGA+AGG - chr6_4:5661299-5661318 Msa0973230:intron 40.0%
TCATGGCCTAAGATTGTTAG+AGG + chr6_4:5661385-5661404 None:intergenic 40.0%
GGTAGAGACAAACTTACTCA+TGG + chr6_4:5661402-5661421 None:intergenic 40.0%
GCAAAATTGTGGTACTTAGG+AGG + chr6_4:5661677-5661696 None:intergenic 40.0%
GGGTCAAAATCGCAAAATTG+TGG + chr6_4:5661688-5661707 None:intergenic 40.0%
! TCGATCAAAATTGGTCTGGA+GGG + chr6_4:5661768-5661787 None:intergenic 40.0%
! ATCGATCAAAATTGGTCTGG+AGG + chr6_4:5661769-5661788 None:intergenic 40.0%
GTGATCGATCAAAATTGGTC+TGG + chr6_4:5661772-5661791 None:intergenic 40.0%
CACCTCACTTTAAGTGATGT+GGG - chr6_4:5661883-5661902 Msa0973230:intron 40.0%
!! TGACTTGGTCAAAATTGGTC+TGG - chr6_4:5661920-5661939 Msa0973230:intron 40.0%
! GACTTGGTCAAAATTGGTCT+GGG - chr6_4:5661921-5661940 Msa0973230:intron 40.0%
! ACTTGGTCAAAATTGGTCTG+GGG - chr6_4:5661922-5661941 Msa0973230:intron 40.0%
GCAAAAGGGAGTAAACTTAG+AGG - chr6_4:5661954-5661973 Msa0973230:intron 40.0%
! TTTTAATGGTAAGGGTCTCG+AGG - chr6_4:5662690-5662709 Msa0973230:CDS 40.0%
!!! CAGTCGCATATTTTGGTTTG+GGG - chr6_4:5663038-5663057 Msa0973230:intron 40.0%
ACTTGAAAGACCATCTAGCT+AGG - chr6_4:5663079-5663098 Msa0973230:intron 40.0%
CAAAAAGAGTTAGCAGAAGG+TGG - chr6_4:5663153-5663172 Msa0973230:intron 40.0%
!! GTTTTTGAGGGTTGGAAAGA+AGG - chr6_4:5663177-5663196 Msa0973230:intron 40.0%
AGCAATATCTATTGTGGTGG+TGG - chr6_4:5663243-5663262 Msa0973230:intron 40.0%
TTTCTCCTGATCTAGTTGGA+AGG + chr6_4:5663269-5663288 None:intergenic 40.0%
! TGCTTTTCTCCTGATCTAGT+TGG + chr6_4:5663273-5663292 None:intergenic 40.0%
AAAAGCAAAGAACACCAGCA+TGG - chr6_4:5663286-5663305 Msa0973230:intron 40.0%
AAGTGGTTACTATACCATGC+TGG + chr6_4:5663303-5663322 None:intergenic 40.0%
CCAGTTGGATCAAAATCAGA+CGG - chr6_4:5663422-5663441 Msa0973230:intron 40.0%
!! TCAGATAGCCAATGTTTTGG+TGG + chr6_4:5663541-5663560 None:intergenic 40.0%
! CGTTCAGATAGCCAATGTTT+TGG + chr6_4:5663544-5663563 None:intergenic 40.0%
! AAACATTGGCTATCTGAACG+TGG - chr6_4:5663544-5663563 Msa0973230:intron 40.0%
! AACATTGGCTATCTGAACGT+GGG - chr6_4:5663545-5663564 Msa0973230:intron 40.0%
GCAGGTGTGATAGAATTCTA+TGG - chr6_4:5663980-5663999 Msa0973230:CDS 40.0%
ATCATCCAGCAAAGAACTTG+TGG - chr6_4:5664104-5664123 Msa0973230:intron 40.0%
CATTTCCACAAGTTCTTTGC+TGG + chr6_4:5664112-5664131 None:intergenic 40.0%
AAATGCTAACTAGTGCCCTA+AGG - chr6_4:5664197-5664216 Msa0973230:intron 40.0%
AATGCTAACTAGTGCCCTAA+GGG - chr6_4:5664198-5664217 Msa0973230:CDS 40.0%
GGTAAATACAATTGCTGTGG+AGG - chr6_4:5664719-5664738 Msa0973230:five_prime_UTR 40.0%
GTTGGTACTTGGAATGTTGC+TGG - chr6_4:5659854-5659873 Msa0973230:CDS 45.0%
! GGGAAGCTTAGCTGTTGATT+TGG - chr6_4:5659889-5659908 Msa0973230:intron 45.0%
GTGAACAAATGCTCCTGATG+CGG - chr6_4:5660173-5660192 Msa0973230:intron 45.0%
GTAGTCTGCAACCCTAGTTA+CGG + chr6_4:5660729-5660748 None:intergenic 45.0%
TACATAGGTTTGGCCCTACT+CGG - chr6_4:5660762-5660781 Msa0973230:CDS 45.0%
!! GATTTTATTGGCCTCCGAGT+AGG + chr6_4:5660779-5660798 None:intergenic 45.0%
TTCTGCCCCTATTACTGTTG+AGG + chr6_4:5660906-5660925 None:intergenic 45.0%
GGGGAAAAGAAAGGTGATGA+AGG - chr6_4:5661292-5661311 Msa0973230:intron 45.0%
! GGATGATGTTTTGTGGTCCT+AGG + chr6_4:5661364-5661383 None:intergenic 45.0%
! TGGAGGGCTAAAAGTGCAAA+AGG + chr6_4:5661752-5661771 None:intergenic 45.0%
GCACCTCACTTTAAGTGATG+TGG - chr6_4:5661882-5661901 Msa0973230:intron 45.0%
CACCCACATCACTTAAAGTG+AGG + chr6_4:5661888-5661907 None:intergenic 45.0%
! CTTGGTCAAAATTGGTCTGG+GGG - chr6_4:5661923-5661942 Msa0973230:intron 45.0%
AGGGAGTAAACTTAGAGGGT+CGG - chr6_4:5661959-5661978 Msa0973230:intron 45.0%
!! AACACATTTCGGGTTTCTGC+TGG - chr6_4:5662405-5662424 Msa0973230:intron 45.0%
! AGCAGAAGGTGGAGTTTTTG+AGG - chr6_4:5663164-5663183 Msa0973230:intron 45.0%
! GCAGAAGGTGGAGTTTTTGA+GGG - chr6_4:5663165-5663184 Msa0973230:intron 45.0%
!! AAGGTGGAGTTTTTGAGGGT+TGG - chr6_4:5663169-5663188 Msa0973230:intron 45.0%
! GTTTGCACTTTTGTGCCAGT+TGG - chr6_4:5663407-5663426 Msa0973230:intron 45.0%
!! CCGTCTGATTTTGATCCAAC+TGG + chr6_4:5663425-5663444 None:intergenic 45.0%
!! TTCTGAGGCCACCAAAACAT+TGG - chr6_4:5663530-5663549 Msa0973230:intron 45.0%
ACGTGGGAATTTGTGACTAC+AGG - chr6_4:5663561-5663580 Msa0973230:intron 45.0%
!! AATATATCATAAAATATAAT+AGG - chr6_4:5663838-5663857 Msa0973230:intron 5.0%
TGTTGCTGGAAGATCTCCTG+TGG - chr6_4:5659868-5659887 Msa0973230:intron 50.0%
GTTGCTGGAAGATCTCCTGT+GGG - chr6_4:5659869-5659888 Msa0973230:intron 50.0%
TCAACAGCTAAGCTTCCCAC+AGG + chr6_4:5659887-5659906 None:intergenic 50.0%
AGCCGACTACAACCGATTGT+AGG - chr6_4:5660002-5660021 Msa0973230:intron 50.0%
GGCCTACAATCGGTTGTAGT+CGG + chr6_4:5660007-5660026 None:intergenic 50.0%
ACTGCAATTGAGACCGCATC+AGG + chr6_4:5660189-5660208 None:intergenic 50.0%
! TGGGGGCCAAAAGTGCAAAA+GGG - chr6_4:5661940-5661959 Msa0973230:intron 50.0%
GCAAGTTCTCGCCTTTCAAC+CGG + chr6_4:5662762-5662781 None:intergenic 50.0%
CACCCTCTAACATCGTTCTG+AGG - chr6_4:5663515-5663534 Msa0973230:intron 50.0%
GGCCTCAGAACGATGTTAGA+GGG + chr6_4:5663520-5663539 None:intergenic 50.0%
TGGCCTCAGAACGATGTTAG+AGG + chr6_4:5663521-5663540 None:intergenic 50.0%
CAACATTCCTTTGATGGGGC+AGG - chr6_4:5663962-5663981 Msa0973230:CDS 50.0%
TATCACACCTGCCCCATCAA+AGG + chr6_4:5663972-5663991 None:intergenic 50.0%
TTATTGCAGGGGGTGAGCAA+AGG - chr6_4:5664500-5664519 Msa0973230:CDS 50.0%
ATTGCTGTGGAGGCTGAAGA+TGG - chr6_4:5664729-5664748 Msa0973230:five_prime_UTR 50.0%
CTGCTTCATGCAACCGACTG+CGG + chr6_4:5659984-5660003 None:intergenic 55.0%
ATAGGTTTGGCCCTACTCGG+AGG - chr6_4:5660765-5660784 Msa0973230:CDS 55.0%
AGGGGCAGAAGATCCATCAG+TGG - chr6_4:5660916-5660935 Msa0973230:intron 55.0%
! CTGGGGGCCAAAAGTGCAAA+AGG - chr6_4:5661939-5661958 Msa0973230:intron 55.0%
GGTGGCCTTCCAACTAGATC+AGG - chr6_4:5663261-5663280 Msa0973230:intron 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 5659072 5664798 5659072 ID=Msa0973230;Name=Msa0973230
chr6_4 mRNA 5659072 5664798 5659072 ID=Msa0973230-mRNA-1;Parent=Msa0973230;Name=Msa0973230-mRNA-1;_AED=0.19;_eAED=0.19;_QI=267|0.83|0.85|1|1|1|7|215|437
chr6_4 exon 5659072 5659361 5659072 ID=Msa0973230-mRNA-1:exon:2407;Parent=Msa0973230-mRNA-1
chr6_4 exon 5659748 5659886 5659748 ID=Msa0973230-mRNA-1:exon:2406;Parent=Msa0973230-mRNA-1
chr6_4 exon 5660563 5660829 5660563 ID=Msa0973230-mRNA-1:exon:2405;Parent=Msa0973230-mRNA-1
chr6_4 exon 5662466 5662993 5662466 ID=Msa0973230-mRNA-1:exon:2404;Parent=Msa0973230-mRNA-1
chr6_4 exon 5663913 5664023 5663913 ID=Msa0973230-mRNA-1:exon:2403;Parent=Msa0973230-mRNA-1
chr6_4 exon 5664198 5664288 5664198 ID=Msa0973230-mRNA-1:exon:2402;Parent=Msa0973230-mRNA-1
chr6_4 exon 5664429 5664798 5664429 ID=Msa0973230-mRNA-1:exon:2401;Parent=Msa0973230-mRNA-1
chr6_4 five_prime_UTR 5664532 5664798 5664532 ID=Msa0973230-mRNA-1:five_prime_utr;Parent=Msa0973230-mRNA-1
chr6_4 CDS 5664429 5664531 5664429 ID=Msa0973230-mRNA-1:cds;Parent=Msa0973230-mRNA-1
chr6_4 CDS 5664198 5664288 5664198 ID=Msa0973230-mRNA-1:cds;Parent=Msa0973230-mRNA-1
chr6_4 CDS 5663913 5664023 5663913 ID=Msa0973230-mRNA-1:cds;Parent=Msa0973230-mRNA-1
chr6_4 CDS 5662466 5662993 5662466 ID=Msa0973230-mRNA-1:cds;Parent=Msa0973230-mRNA-1
chr6_4 CDS 5660563 5660829 5660563 ID=Msa0973230-mRNA-1:cds;Parent=Msa0973230-mRNA-1
chr6_4 CDS 5659748 5659886 5659748 ID=Msa0973230-mRNA-1:cds;Parent=Msa0973230-mRNA-1
chr6_4 CDS 5659287 5659361 5659287 ID=Msa0973230-mRNA-1:cds;Parent=Msa0973230-mRNA-1
chr6_4 three_prime_UTR 5659072 5659286 5659072 ID=Msa0973230-mRNA-1:three_prime_utr;Parent=Msa0973230-mRNA-1
Gene Sequence

>Msa0973230

ATGGAGTTGAAGAACCAAAAATCAAGATATAAGAGGCTATCCAATTGGTTCACCACCAAACAAAAGGAAAATAAGCCATCATTAAGTTTGTATGAAATTGAAGATATAGTTGAAGATGAGAGTGATGAATATGAGGGAAATCTTTCCTTTCAGTCACTGGAATTTGATTCTTGCATTTCAACAAATAAGCTAAGGATTTTTGTTGGTACTTGGAATGTTGCTGGAAGATCTCCTGTGGGAAGCTTAGCTGTTGATTTGGATGAGTGGTTAAATCTCAAGAATTCTGCAGATATATATGTTCTCGGGTTTCAAGAGATTGTACCTTTGAAGACCTCAACAGTAATAGGGGCAGAAGATCCATCAGTGGCAACAAATTGGAACAATCTTATAGGAAAAACACTAAACAACAAATTTGAGTTCCCATGGTTAACACCTATGTTAAATTCATCCTTGCCAAATGATCAAGAAAATTATCAAAACATTGGAGGAAGTGGAACCAACAAAAACAAGTACAAGATGGTAGCTAGTAAAAAAATGGTTGGAGTATTCATAAGTGTTTGGTTAAAAGAACAAGTGTTGGAAAAATATTGTGTTTCAAATGTGAGAGTTTGTTCAGTTGCATGTGGTGTTATGGGATATTTAGGAAACAAAGGTTGTGTGGGAGTTAGTATGTTGATTGAAGGAACAAGTTTTTGTTTTGTTGTAGCACATTTAGCTTCTGGGGAAAAGAAAGGTGATGAAGGTAGAAGGAATCATCAAGTTGAAGAAATTTTTAGGAGAACATCTTTTCCTAGGACCACAAAACATCATCCTCTAACAATCTTAGGCCATGATCGCATATTTTGGTTTGGGGATCTCAACTATAGACTATACTTGAAAGACCATCTAGCTAGGCATCTAATAAGAAAGCAAGATTGGAAGGCTTTGCAAGAATTTGATCAACTTCAAAAAGAGTTAGCAGAAGGTGGAGTTTTTGAGGGTTGGAAAGAAGGTAACGTAGAATTTGCCCCAACATATAAGTACTCATCTTCCACTAGCAATATCTATTGTGGTGGTGGCCTTCCAACTAGATCAGGAGAAAAGCAAAGAACACCAGCATGGTGTGATAGAATTCTATGGTATGGTAAAGGAGTAGAACAACTTTACTATATTAGAAGTGAAAGCAAGTTCTCTGATCATCGTCCAGTTTCAGCACTCTTCTCTACACATATTGAAATCAAATCATCCAGCAAAGAACTTGGGGTGAGCAAAGGAGAAGAAGATGAAAAATTTACCTCACTTTCAATGTTAATGAAGAATGTACAAGGCTGCTAA
Protein sequence

>Msa0973230

MELKNQKSRYKRLSNWFTTKQKENKPSLSLYEIEDIVEDESDEYEGNLSFQSLEFDSCISTNKLRIFVGTWNVAGRSPVGSLAVDLDEWLNLKNSADIYVLGFQEIVPLKTSTVIGAEDPSVATNWNNLIGKTLNNKFEFPWLTPMLNSSLPNDQENYQNIGGSGTNKNKYKMVASKKMVGVFISVWLKEQVLEKYCVSNVRVCSVACGVMGYLGNKGCVGVSMLIEGTSFCFVVAHLASGEKKGDEGRRNHQVEEIFRRTSFPRTTKHHPLTILGHDRIFWFGDLNYRLYLKDHLARHLIRKQDWKALQEFDQLQKELAEGGVFEGWKEGNVEFAPTYKYSSSTSNIYCGGGLPTRSGEKQRTPAWCDRILWYGKGVEQLYYIRSESKFSDHRPVSALFSTHIEIKSSSKELGVSKGEEDEKFTSLSMLMKNVQGC*