AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0887070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0887070 MtrunA17_Chr6g0466681 70.435 345 13 4 1 256 1 345 7.51e-163 454
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0887070 AT4G09750.1 56.075 321 52 4 24 255 1 321 9.25e-117 337

Find 70 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGATTACTTACAACATTTA+AGG 0.105302 6_1:+48072952 None:intergenic
GATATAACTGTCGCTAATTT+TGG 0.137780 6_1:+48072901 None:intergenic
GCATCTCTTTCGGCTTAAAT+AGG 0.200335 6_1:-48073140 Msa0887070:exon
ACTTATTCATATACAGCTTT+AGG 0.239146 6_1:+48072835 None:intergenic
AATGAGAGATACAATGTTAA+AGG 0.263034 6_1:+48078623 None:intergenic
AGGTTGCACTAACAGAAAAT+TGG 0.277567 6_1:-48073800 Msa0887070:CDS
TGTATATGAATAAGTTTCTA+TGG 0.278574 6_1:-48072827 Msa0887070:three_prime_UTR
CTAATTAATTACAGGCTTGC+AGG 0.288075 6_1:-48073347 Msa0887070:intron
GTAATCATAGAACCTGTTTC+AGG 0.297564 6_1:-48072937 Msa0887070:three_prime_UTR
TCGATCCTTGGCATCTCTTT+CGG 0.317606 6_1:-48073150 Msa0887070:CDS
AGCATTAAATGAAAGGTGTT+TGG 0.325335 6_1:+48073217 None:intergenic
CACAGTTACCTGTAGATCTT+TGG 0.325674 6_1:+48074641 None:intergenic
CGTGTCATTACTGTTTCTTC+TGG 0.335143 6_1:-48074687 Msa0887070:CDS
AACTTTGCTGTCAATGTATT+AGG 0.347400 6_1:-48074768 Msa0887070:CDS
TGAATTGATGGTACCGTTAC+TGG 0.361549 6_1:-48074730 Msa0887070:CDS
CATCTCTTTCGGCTTAAATA+GGG 0.363821 6_1:-48073139 Msa0887070:exon
TTAGGAAAATGTACACTTCA+TGG 0.364230 6_1:+48072853 None:intergenic
CCAGATACCAACTTCTCCTT+TGG 0.367870 6_1:+48073269 None:intergenic
AAGGCGCGGACACGGTTATC+TGG 0.368865 6_1:-48073304 Msa0887070:CDS
GGTTGCACTAACAGAAAATT+GGG 0.372940 6_1:-48073799 Msa0887070:CDS
TTACGCCATGACTGAATTGA+TGG 0.373220 6_1:-48074742 Msa0887070:CDS
TCTCATTATGTTTCTTATCA+AGG 0.380949 6_1:-48078607 Msa0887070:intron
CATTGATAGTCTTCGATCCT+TGG 0.381103 6_1:-48073162 Msa0887070:CDS
CCAAAGGAGAAGTTGGTATC+TGG 0.391733 6_1:-48073269 Msa0887070:CDS
GCATTAAATGAAAGGTGTTT+GGG 0.399601 6_1:+48073218 None:intergenic
TGCATCAAGGTTAACAATGC+TGG 0.401264 6_1:-48075167 Msa0887070:intron
TGTTCCAGATGTTCAATAGT+AGG 0.406821 6_1:-48077299 Msa0887070:intron
GGGAAGAATTGCATTGTAAC+AGG 0.410191 6_1:-48076332 Msa0887070:CDS
ATTTGTGTTTCTGTTTCCTC+TGG 0.412827 6_1:+48076359 None:intergenic
CCAGGTTGGGCTGACACTCC+TGG 0.413309 6_1:-48073732 Msa0887070:CDS
ACAGGAGCAAACTCTGGAAT+TGG 0.413799 6_1:-48076314 Msa0887070:CDS
ACAGTAATGACACGTGCATC+AGG 0.419282 6_1:+48074696 None:intergenic
TACTTCTGCGCTAAACAGTT+AGG 0.427598 6_1:-48073112 Msa0887070:three_prime_UTR
TTACTCGATGCATCCAGGTT+GGG 0.430651 6_1:-48073745 Msa0887070:CDS
AATGCTATATTACCTGAAAC+AGG 0.435344 6_1:+48072925 None:intergenic
GTCATTACTGTTTCTTCTGG+TGG 0.452728 6_1:-48074684 Msa0887070:CDS
TCCCTTGACCAAAGATCTAC+AGG 0.490363 6_1:-48074649 Msa0887070:intron
GTGAAACATACAAGAACAAA+GGG 0.495041 6_1:-48073776 Msa0887070:CDS
AAGCTTAGAACAAGCGAAGA+AGG 0.497019 6_1:-48073323 Msa0887070:CDS
TTTACTCGATGCATCCAGGT+TGG 0.504519 6_1:-48073746 Msa0887070:CDS
GTTACAATGCAATTCTTCCC+TGG 0.509486 6_1:+48076335 None:intergenic
ATTGGTTATGCGGCAGCTGA+GGG 0.522993 6_1:-48076296 Msa0887070:CDS
AATTGGTTATGCGGCAGCTG+AGG 0.524068 6_1:-48076297 Msa0887070:CDS
CCAGGAGTGTCAGCCCAACC+TGG 0.529866 6_1:+48073732 None:intergenic
AATCGAGTTACTACATCAGA+AGG 0.531699 6_1:-48075131 Msa0887070:CDS
ACCTGTAGATCTTTGGTCAA+GGG 0.546962 6_1:+48074648 None:intergenic
CTTTCATTTAATGCTACAAG+TGG 0.547346 6_1:-48073209 Msa0887070:CDS
TAATTAATTACAGGCTTGCA+GGG 0.550954 6_1:-48073346 Msa0887070:intron
ACTACAACCAAAGGAGAAGT+TGG 0.556290 6_1:-48073276 Msa0887070:CDS
TTCTAAGAATTTCAAACCAG+AGG 0.557905 6_1:-48076375 Msa0887070:CDS
TACCTGTAGATCTTTGGTCA+AGG 0.568894 6_1:+48074647 None:intergenic
GAAACAGAAACACAAATACC+AGG 0.569965 6_1:-48076353 Msa0887070:CDS
CACTTGTAGCATTAAATGAA+AGG 0.577862 6_1:+48073210 None:intergenic
GTATATGAATAAGTTTCTAT+GGG 0.579445 6_1:-48072826 Msa0887070:three_prime_UTR
ATTGTAACAGGAGCAAACTC+TGG 0.588444 6_1:-48076320 Msa0887070:CDS
ACATACAAGAACAAAGGGAT+AGG 0.589492 6_1:-48073771 Msa0887070:CDS
AAGCGAAGAAGGCGCGGACA+CGG 0.590204 6_1:-48073312 Msa0887070:CDS
TTAAGCCGAAAGAGATGCCA+AGG 0.597074 6_1:+48073145 None:intergenic
CAGTAATGACACGTGCATCA+GGG 0.598705 6_1:+48074697 None:intergenic
CGGTACCATCAATTCAGTCA+TGG 0.602047 6_1:+48074737 None:intergenic
GGGGAAGCTTTCTCCAGTAA+CGG 0.603395 6_1:+48074717 None:intergenic
CTGGTTGGCACTACAACCAA+AGG 0.614640 6_1:-48073285 Msa0887070:CDS
AGTAATGACACGTGCATCAG+GGG 0.621348 6_1:+48074698 None:intergenic
GGTGAAACATACAAGAACAA+AGG 0.631717 6_1:-48073777 Msa0887070:CDS
AAACAGAAACACAAATACCA+GGG 0.633281 6_1:-48076352 Msa0887070:CDS
TAGAACAAGCGAAGAAGGCG+CGG 0.636188 6_1:-48073318 Msa0887070:CDS
CAGCTGAGGGTCTTGCACAG+CGG 0.656011 6_1:-48076283 Msa0887070:intron
ATCGAGTTACTACATCAGAA+GGG 0.664466 6_1:-48075130 Msa0887070:intron
AAACTCTGGAATTGGTTATG+CGG 0.681764 6_1:-48076306 Msa0887070:CDS
GTTGCACTAACAGAAAATTG+GGG 0.760563 6_1:-48073798 Msa0887070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTATTGTTATTGTTATT+AGG - chr6_1:48073345-48073364 Msa0887070:intron 10.0%
!! ATGATAATAATTATTGTTAT+TGG - chr6_1:48074019-48074038 Msa0887070:intron 10.0%
!!! AAGATAAAATTTTATACATA+AGG + chr6_1:48075127-48075146 None:intergenic 10.0%
!! TCTTAAAAGATATATAATGA+TGG - chr6_1:48073312-48073331 Msa0887070:CDS 15.0%
!! ATTATGCAATAAATATATAG+AGG - chr6_1:48074312-48074331 Msa0887070:intron 15.0%
!! TTCATATAATTCTTAGAATT+TGG + chr6_1:48074747-48074766 None:intergenic 15.0%
!!! TATCTTTTGTTATAAAAAAG+AGG - chr6_1:48075669-48075688 Msa0887070:intron 15.0%
!!! AATTTAAAATAAGAAACTCA+CGG - chr6_1:48076203-48076222 Msa0887070:intron 15.0%
!!! AATAATCAATAGTTTTTCTA+CGG + chr6_1:48077888-48077907 None:intergenic 15.0%
!!! TTCTATTTTAATCTTTTGAT+TGG + chr6_1:48078492-48078511 None:intergenic 15.0%
!!! ATTTTATGTTCCGTTTTTTA+TGG + chr6_1:48072847-48072866 None:intergenic 20.0%
!! GAACATAAAATGAAAAAAAG+TGG - chr6_1:48072856-48072875 Msa0887070:three_prime_UTR 20.0%
!! AATGAAATGTGAAATTGTTA+AGG + chr6_1:48072973-48072992 None:intergenic 20.0%
!!! GTAAAATAGTTGATTCAAAA+TGG + chr6_1:48073127-48073146 None:intergenic 20.0%
!! TCCTATTTATAAGAGATATT+TGG - chr6_1:48073161-48073180 Msa0887070:CDS 20.0%
!! CCTATTTATAAGAGATATTT+GGG - chr6_1:48073162-48073181 Msa0887070:CDS 20.0%
!!! ATAAAATTTGTTTTACCAAC+TGG - chr6_1:48073468-48073487 Msa0887070:intron 20.0%
!!! ATTTATATCTAGCTTTTTGT+TGG - chr6_1:48073628-48073647 Msa0887070:intron 20.0%
!!! TTTATATCTAGCTTTTTGTT+GGG - chr6_1:48073629-48073648 Msa0887070:intron 20.0%
!!! CTTTTAGACATTAAGTATAT+GGG + chr6_1:48073724-48073743 None:intergenic 20.0%
!!! ACTTTTAGACATTAAGTATA+TGG + chr6_1:48073725-48073744 None:intergenic 20.0%
!!! ACTTAATGTCTAAAAGTTTT+CGG - chr6_1:48073728-48073747 Msa0887070:CDS 20.0%
!!! GTTTATTTTGTTTGTTTGAT+TGG - chr6_1:48074888-48074907 Msa0887070:intron 20.0%
!!! TCATTTATTTTTGAATGTTG+AGG - chr6_1:48074971-48074990 Msa0887070:intron 20.0%
!! TAAAGTAAGTAAATTCAAAC+AGG + chr6_1:48075490-48075509 None:intergenic 20.0%
!!! TAAAAAGTCTAATATGCTTT+TGG + chr6_1:48075774-48075793 None:intergenic 20.0%
!!! TTTTCACAATTTTGTTGATT+TGG - chr6_1:48075827-48075846 Msa0887070:intron 20.0%
!!! ATTTAAAATAAGAAACTCAC+GGG - chr6_1:48076204-48076223 Msa0887070:intron 20.0%
!! ATTCTCTTGAAAATCTAATA+TGG - chr6_1:48076334-48076353 Msa0887070:CDS 20.0%
!!! TTTTCAAATAGAAACTATAG+AGG + chr6_1:48076572-48076591 None:intergenic 20.0%
!!! GTACTGATATTTTAAATTCA+AGG - chr6_1:48077064-48077083 Msa0887070:intron 20.0%
!!! ATGCAAATTTTGTGATATAT+TGG - chr6_1:48077704-48077723 Msa0887070:intron 20.0%
!! TTGATTATTAAAACCATTCA+TGG - chr6_1:48077899-48077918 Msa0887070:intron 20.0%
!! TGATTATTAAAACCATTCAT+GGG - chr6_1:48077900-48077919 Msa0887070:intron 20.0%
!!! GTTTTTTGGTTTTTTTAATC+CGG - chr6_1:48078524-48078543 Msa0887070:intron 20.0%
!! ATGATTACTTACAACATTTA+AGG + chr6_1:48078585-48078604 None:intergenic 20.0%
!!! ACAGTTATATCAATTGTTTT+CGG - chr6_1:48078645-48078664 Msa0887070:CDS 20.0%
!! TGTATATGAATAAGTTTCTA+TGG - chr6_1:48078707-48078726 Msa0887070:five_prime_UTR 20.0%
! AATGAGAGATACAATGTTAA+AGG + chr6_1:48072914-48072933 None:intergenic 25.0%
! TCTCATTATGTTTCTTATCA+AGG - chr6_1:48072927-48072946 Msa0887070:three_prime_UTR 25.0%
! ATATCTCTTATAAATAGGAC+CGG + chr6_1:48073160-48073179 None:intergenic 25.0%
! CCCAAATATCTCTTATAAAT+AGG + chr6_1:48073165-48073184 None:intergenic 25.0%
! CCAAATTATAAGAGACATTT+CGG + chr6_1:48073270-48073289 None:intergenic 25.0%
! ATCATAGAATTTCTTAAGTC+AGG - chr6_1:48073374-48073393 Msa0887070:intron 25.0%
! TAGAGCACAAATATCAATTT+AGG - chr6_1:48073423-48073442 Msa0887070:intron 25.0%
!! AGTTTAGTGTTGGATATATA+AGG - chr6_1:48073691-48073710 Msa0887070:intron 25.0%
!! GTTTAGTGTTGGATATATAA+GGG - chr6_1:48073692-48073711 Msa0887070:intron 25.0%
! ACATGTAGTGATTAAATAGT+GGG - chr6_1:48073845-48073864 Msa0887070:intron 25.0%
! CTGCTATATTATATTGTTCA+TGG - chr6_1:48073980-48073999 Msa0887070:intron 25.0%
! CAAAAATAGTTGCTATAAGT+TGG - chr6_1:48074072-48074091 Msa0887070:intron 25.0%
! CTTAAATCCAAGTTATAAGA+CGG - chr6_1:48074134-48074153 Msa0887070:intron 25.0%
!!! AGAAAAGCATTAAGAATTTG+AGG + chr6_1:48074786-48074805 None:intergenic 25.0%
! AAAAGAAGAATGTAGAAAAG+TGG - chr6_1:48075085-48075104 Msa0887070:intron 25.0%
! AAAATTCCAGAAACAAACAT+CGG + chr6_1:48075291-48075310 None:intergenic 25.0%
! TGTAATTATATGCTAATCTG+TGG - chr6_1:48075323-48075342 Msa0887070:intron 25.0%
!!! TAATATGCTTTTGGTAGTTA+CGG + chr6_1:48075765-48075784 None:intergenic 25.0%
!!! GTATTCGGTTATTTCATTTT+TGG + chr6_1:48076075-48076094 None:intergenic 25.0%
! CAACTAACTCAATCATTTAT+AGG - chr6_1:48076928-48076947 Msa0887070:intron 25.0%
! ATTGACAACATTAGTCATTA+TGG + chr6_1:48077322-48077341 None:intergenic 25.0%
!! AATCCTTATTTCTTGAATAG+AGG - chr6_1:48077613-48077632 Msa0887070:intron 25.0%
! TAACCTCTATTCAAGAAATA+AGG + chr6_1:48077619-48077638 None:intergenic 25.0%
!! TTATTTCTTGAATAGAGGTT+AGG - chr6_1:48077618-48077637 Msa0887070:intron 25.0%
! GTACATAATCATTAGGATTT+AGG + chr6_1:48078163-48078182 None:intergenic 25.0%
! ACTTATTCATATACAGCTTT+AGG + chr6_1:48078702-48078721 None:intergenic 25.0%
CAAATAACATACAGAAAAGC+AGG + chr6_1:48073092-48073111 None:intergenic 30.0%
!! TCAACAAAAGTTGATGTATG+TGG + chr6_1:48073225-48073244 None:intergenic 30.0%
CCGAAATGTCTCTTATAATT+TGG - chr6_1:48073267-48073286 Msa0887070:CDS 30.0%
ATGTCTCTTATAATTTGGAC+CGG - chr6_1:48073272-48073291 Msa0887070:CDS 30.0%
!! AATTCGAACATTGATTCATC+AGG + chr6_1:48073529-48073548 None:intergenic 30.0%
AACACTAAACTCATTCATAG+TGG + chr6_1:48073682-48073701 None:intergenic 30.0%
ACTATGAATGAGTTTAGTGT+TGG - chr6_1:48073681-48073700 Msa0887070:intron 30.0%
GACATGTAGTGATTAAATAG+TGG - chr6_1:48073844-48073863 Msa0887070:intron 30.0%
GTTGACTAATGATATGTGAT+AGG - chr6_1:48074048-48074067 Msa0887070:intron 30.0%
!! AACTCTCATTGACTAACTTT+TGG - chr6_1:48074099-48074118 Msa0887070:intron 30.0%
!! ACTCTCATTGACTAACTTTT+GGG - chr6_1:48074100-48074119 Msa0887070:intron 30.0%
GTAGGTATGAAGATGTTTAT+TGG - chr6_1:48074253-48074272 Msa0887070:intron 30.0%
!!! TCTATGTTTGTTTTGAACAC+TGG + chr6_1:48074293-48074312 None:intergenic 30.0%
TATAGAGGATCTTACAATGT+TGG - chr6_1:48074327-48074346 Msa0887070:intron 30.0%
AGTCAGTATAATGATTGAGA+TGG - chr6_1:48074446-48074465 Msa0887070:intron 30.0%
! AGAGGTTTAAAATGATTGAG+TGG - chr6_1:48074472-48074491 Msa0887070:intron 30.0%
! TTTTACAAGTTTGAAGGATG+TGG - chr6_1:48074497-48074516 Msa0887070:intron 30.0%
TAACTACTTCACCATATTAC+TGG + chr6_1:48074563-48074582 None:intergenic 30.0%
AGTAATATGGTGAAGTAGTT+AGG - chr6_1:48074562-48074581 Msa0887070:intron 30.0%
! CTTTTCTTAACACACAACAT+TGG - chr6_1:48074799-48074818 Msa0887070:intron 30.0%
! AAAGAGAAGGAAATGACTTT+TGG + chr6_1:48074856-48074875 None:intergenic 30.0%
AAAAGTCATTTCCTTCTCTT+TGG - chr6_1:48074855-48074874 Msa0887070:intron 30.0%
AAAGTCATTTCCTTCTCTTT+GGG - chr6_1:48074856-48074875 Msa0887070:intron 30.0%
! TTCTAAGAATTTCAAACCAG+AGG - chr6_1:48075159-48075178 Msa0887070:CDS 30.0%
AAACAGAAACACAAATACCA+GGG - chr6_1:48075182-48075201 Msa0887070:intron 30.0%
CTATCTTGTATGTCGTAATA+AGG - chr6_1:48075375-48075394 Msa0887070:intron 30.0%
TGGCAATCAAAATGTGTATT+TGG - chr6_1:48075438-48075457 Msa0887070:intron 30.0%
CAATCAAAATGTGTATTTGG+AGG - chr6_1:48075441-48075460 Msa0887070:intron 30.0%
! GAAACTGTTTTCAGAACATA+TGG - chr6_1:48075536-48075555 Msa0887070:intron 30.0%
! AACATTCTTTTCAGAAAACC+TGG + chr6_1:48075946-48075965 None:intergenic 30.0%
TGGAACAATTTATTGCATCA+AGG - chr6_1:48076354-48076373 Msa0887070:CDS 30.0%
TTGAACAAGTGTTATCGTTT+CGG + chr6_1:48076673-48076692 None:intergenic 30.0%
AAGTTTACCTATTCTTGTTC+AGG - chr6_1:48076734-48076753 Msa0887070:intron 30.0%
! AACTTTGCTGTCAATGTATT+AGG - chr6_1:48076766-48076785 Msa0887070:intron 30.0%
ACAAAAAAATCGCATTGTAG+TGG - chr6_1:48077269-48077288 Msa0887070:intron 30.0%
GTGAAACATACAAGAACAAA+GGG - chr6_1:48077758-48077777 Msa0887070:intron 30.0%
! TTTTTCTACGGATGATGTTA+AGG + chr6_1:48077876-48077895 None:intergenic 30.0%
CAAGGATTATAGACTCATAA+TGG + chr6_1:48078015-48078034 None:intergenic 30.0%
TATAATCCTTGATTTCGTAG+CGG - chr6_1:48078024-48078043 Msa0887070:intron 30.0%
AAGAATCTGACTTCAATTCT+TGG + chr6_1:48078101-48078120 None:intergenic 30.0%
TAGGTCAGTACATAATCATT+AGG + chr6_1:48078170-48078189 None:intergenic 30.0%
! GTACTGACCTAATTAATTAC+AGG - chr6_1:48078179-48078198 Msa0887070:intron 30.0%
TAATTAATTACAGGCTTGCA+GGG - chr6_1:48078188-48078207 Msa0887070:intron 30.0%
!! GCATTAAATGAAAGGTGTTT+GGG + chr6_1:48078319-48078338 None:intergenic 30.0%
!! AGCATTAAATGAAAGGTGTT+TGG + chr6_1:48078320-48078339 None:intergenic 30.0%
CACTTGTAGCATTAAATGAA+AGG + chr6_1:48078327-48078346 None:intergenic 30.0%
CTTTCATTTAATGCTACAAG+TGG - chr6_1:48078325-48078344 Msa0887070:intron 30.0%
!!! CAGTTAGGTTTTTTGTAGTT+CGG - chr6_1:48078437-48078456 Msa0887070:intron 30.0%
!!! AACAGATTTCGTGTGTTTTT+TGG - chr6_1:48078510-48078529 Msa0887070:intron 30.0%
AATGCTATATTACCTGAAAC+AGG + chr6_1:48078612-48078631 None:intergenic 30.0%
! GATATAACTGTCGCTAATTT+TGG + chr6_1:48078636-48078655 None:intergenic 30.0%
TTAGGAAAATGTACACTTCA+TGG + chr6_1:48078684-48078703 None:intergenic 30.0%
CACACGTCAACCATAAAAAA+CGG - chr6_1:48072834-48072853 Msa0887070:three_prime_UTR 35.0%
TGTTTGTGTTTGAACAGACA+TGG - chr6_1:48073021-48073040 Msa0887070:intron 35.0%
!!! CAAACTGCTTTTGGTGTTTA+TGG - chr6_1:48073047-48073066 Msa0887070:three_prime_UTR 35.0%
! CTATTTTACTATCTCCTCTC+CGG - chr6_1:48073138-48073157 Msa0887070:exon 35.0%
! TGAACCAGATACATCCATTT+TGG + chr6_1:48073192-48073211 None:intergenic 35.0%
GTCAATAAAAGAGACATGTC+AGG + chr6_1:48073248-48073267 None:intergenic 35.0%
GAACTAATAAACACTCTCTC+CGG + chr6_1:48073294-48073313 None:intergenic 35.0%
!!! TTTGTTTTACCAACTGGAGT+TGG - chr6_1:48073474-48073493 Msa0887070:intron 35.0%
!! TTGTTTTACCAACTGGAGTT+GGG - chr6_1:48073475-48073494 Msa0887070:intron 35.0%
!! AACATTGATTCATCAGGTTG+TGG + chr6_1:48073523-48073542 None:intergenic 35.0%
TTTAATGTCAGGCCTAGAAT+AGG - chr6_1:48073571-48073590 Msa0887070:intron 35.0%
AGGTTCACTAATCCTATTCT+AGG + chr6_1:48073586-48073605 None:intergenic 35.0%
! GAATAGGATTAGTGAACCTA+TGG - chr6_1:48073587-48073606 Msa0887070:intron 35.0%
ATTAGTGAACCTATGGCTAT+GGG - chr6_1:48073594-48073613 Msa0887070:intron 35.0%
!! AACTCATTCATAGTGGATGT+GGG + chr6_1:48073675-48073694 None:intergenic 35.0%
!! AAACTCATTCATAGTGGATG+TGG + chr6_1:48073676-48073695 None:intergenic 35.0%
! TAGTGTTGGATATATAAGGG+TGG - chr6_1:48073695-48073714 Msa0887070:intron 35.0%
ATCACTACATGTCTGAAAGT+GGG + chr6_1:48073837-48073856 None:intergenic 35.0%
AATCACTACATGTCTGAAAG+TGG + chr6_1:48073838-48073857 None:intergenic 35.0%
!! CTCTCATTGACTAACTTTTG+GGG - chr6_1:48074101-48074120 Msa0887070:intron 35.0%
TCTGATACCGTCTTATAACT+TGG + chr6_1:48074144-48074163 None:intergenic 35.0%
! AACATCTGGAACATGAAGTT+TGG + chr6_1:48074228-48074247 None:intergenic 35.0%
TGTTCCAGATGTTCAATAGT+AGG - chr6_1:48074235-48074254 Msa0887070:intron 35.0%
CATACCTACTATTGAACATC+TGG + chr6_1:48074242-48074261 None:intergenic 35.0%
! CTTACAATGTTGGTAGATTG+AGG - chr6_1:48074337-48074356 Msa0887070:intron 35.0%
TTGGTAGATTGAGGAAAGAA+AGG - chr6_1:48074346-48074365 Msa0887070:intron 35.0%
TAATGATTGAGATGGATGAG+AGG - chr6_1:48074454-48074473 Msa0887070:intron 35.0%
! GTGGACTTTTACAAGTTTGA+AGG - chr6_1:48074491-48074510 Msa0887070:intron 35.0%
AAGTTTGAAGGATGTGGTAT+TGG - chr6_1:48074503-48074522 Msa0887070:intron 35.0%
AGTTTGAAGGATGTGGTATT+GGG - chr6_1:48074504-48074523 Msa0887070:intron 35.0%
AATATGGTGAAGTAGTTAGG+TGG - chr6_1:48074565-48074584 Msa0887070:intron 35.0%
ATTTCCAACCCCAAAATATG+TGG - chr6_1:48074596-48074615 Msa0887070:intron 35.0%
TTTCCAACCCCAAAATATGT+GGG - chr6_1:48074597-48074616 Msa0887070:intron 35.0%
! AATCGGATTCTAAGAATGCA+TGG - chr6_1:48074675-48074694 Msa0887070:CDS 35.0%
CTGTATCAACATTTACTGTG+TGG - chr6_1:48074917-48074936 Msa0887070:intron 35.0%
! ATTTGTGTTTCTGTTTCCTC+TGG + chr6_1:48075178-48075197 None:intergenic 35.0%
GAAACAGAAACACAAATACC+AGG - chr6_1:48075181-48075200 Msa0887070:intron 35.0%
!! AAACTCTGGAATTGGTTATG+CGG - chr6_1:48075228-48075247 Msa0887070:intron 35.0%
AGAAACAAACATCGGAAGAA+AGG + chr6_1:48075283-48075302 None:intergenic 35.0%
TTTCTTCCGATGTTTGTTTC+TGG - chr6_1:48075282-48075301 Msa0887070:intron 35.0%
TCCCAAATTCAGACTAAAAC+TGG - chr6_1:48075418-48075437 Msa0887070:intron 35.0%
!! GCCAGTTTTAGTCTGAATTT+GGG + chr6_1:48075422-48075441 None:intergenic 35.0%
!! TGCCAGTTTTAGTCTGAATT+TGG + chr6_1:48075423-48075442 None:intergenic 35.0%
! TATTGCCGCCAATTCTTTTA+GGG - chr6_1:48075464-48075483 Msa0887070:intron 35.0%
ACATTATCCTAGAGAGCTTA+TGG + chr6_1:48075607-48075626 None:intergenic 35.0%
! CTTCAGATTAAAAGCACGTT+CGG + chr6_1:48076139-48076158 None:intergenic 35.0%
!! GTGCTTTTAATCTGAAGTGT+CGG - chr6_1:48076142-48076161 Msa0887070:intron 35.0%
! GGACTTTTGTATCTTGCTTT+TGG - chr6_1:48076225-48076244 Msa0887070:intron 35.0%
AATCGAGTTACTACATCAGA+AGG - chr6_1:48076403-48076422 Msa0887070:intron 35.0%
ATCGAGTTACTACATCAGAA+GGG - chr6_1:48076404-48076423 Msa0887070:intron 35.0%
ACTCAAACCTGAACAAGAAT+AGG + chr6_1:48076744-48076763 None:intergenic 35.0%
CATCAATAGCTATGAAACAC+TGG + chr6_1:48077201-48077220 None:intergenic 35.0%
TTGTATCACTATTCAGTCAC+AGG + chr6_1:48077382-48077401 None:intergenic 35.0%
TTGAATAGAGGTTAGGACTT+AGG - chr6_1:48077625-48077644 Msa0887070:intron 35.0%
TGTGATATATTGGAAATGCC+AGG - chr6_1:48077714-48077733 Msa0887070:intron 35.0%
! AATTTTCTGTTAGTGCAACC+TGG + chr6_1:48077735-48077754 None:intergenic 35.0%
AGGTTGCACTAACAGAAAAT+TGG - chr6_1:48077734-48077753 Msa0887070:intron 35.0%
GGTTGCACTAACAGAAAATT+GGG - chr6_1:48077735-48077754 Msa0887070:intron 35.0%
GTTGCACTAACAGAAAATTG+GGG - chr6_1:48077736-48077755 Msa0887070:intron 35.0%
GGTGAAACATACAAGAACAA+AGG - chr6_1:48077757-48077776 Msa0887070:intron 35.0%
ACATACAAGAACAAAGGGAT+AGG - chr6_1:48077763-48077782 Msa0887070:intron 35.0%
!! AGACTCATAATGGACTCAAA+GGG + chr6_1:48078005-48078024 None:intergenic 35.0%
!! TAGACTCATAATGGACTCAA+AGG + chr6_1:48078006-48078025 None:intergenic 35.0%
ATAATCCTTGATTTCGTAGC+GGG - chr6_1:48078025-48078044 Msa0887070:intron 35.0%
!! GCATGTGACTTTTATTTCGT+GGG - chr6_1:48078048-48078067 Msa0887070:intron 35.0%
!! CATGTGACTTTTATTTCGTG+GGG - chr6_1:48078049-48078068 Msa0887070:intron 35.0%
ATTCTTGGAGTCGTGTATTT+GGG + chr6_1:48078086-48078105 None:intergenic 35.0%
AATTCTTGGAGTCGTGTATT+TGG + chr6_1:48078087-48078106 None:intergenic 35.0%
! TTGAAGTCAGATTCTTTTCG+TGG - chr6_1:48078105-48078124 Msa0887070:intron 35.0%
! TGAAGTCAGATTCTTTTCGT+GGG - chr6_1:48078106-48078125 Msa0887070:intron 35.0%
CTGCAAGCCTGTAATTAATT+AGG + chr6_1:48078189-48078208 None:intergenic 35.0%
CTAATTAATTACAGGCTTGC+AGG - chr6_1:48078187-48078206 Msa0887070:intron 35.0%
CATCTCTTTCGGCTTAAATA+GGG - chr6_1:48078395-48078414 Msa0887070:intron 35.0%
!!! GGTTTGAATCAGTTTTGAGA+TGG - chr6_1:48078458-48078477 Msa0887070:intron 35.0%
GTAATCATAGAACCTGTTTC+AGG - chr6_1:48078597-48078616 Msa0887070:intron 35.0%
! ACATGGAGACAAACTGCTTT+TGG - chr6_1:48073038-48073057 Msa0887070:intron 40.0%
TCTTATAAATAGGACCGGAG+AGG + chr6_1:48073155-48073174 None:intergenic 40.0%
GATATTTGGGTCGACCAAAA+TGG - chr6_1:48073175-48073194 Msa0887070:CDS 40.0%
TCGACCAAAATGGATGTATC+TGG - chr6_1:48073185-48073204 Msa0887070:CDS 40.0%
! ATTGATTCATCAGGTTGTGG+AGG + chr6_1:48073520-48073539 None:intergenic 40.0%
TCAATGTTCGAATTTCGACC+AGG - chr6_1:48073535-48073554 Msa0887070:intron 40.0%
AGGTGACCACATTTAATGTC+AGG - chr6_1:48073560-48073579 Msa0887070:intron 40.0%
TCTAGGCCTGACATTAAATG+TGG + chr6_1:48073569-48073588 None:intergenic 40.0%
GATTAGTGAACCTATGGCTA+TGG - chr6_1:48073593-48073612 Msa0887070:intron 40.0%
! GTTTTTGTTCCCATAGCCAT+AGG + chr6_1:48073606-48073625 None:intergenic 40.0%
TTGTTGGGTTTAAGTGTGAC+CGG - chr6_1:48073644-48073663 Msa0887070:intron 40.0%
TCTATGGGTGGACAATTAAC+AGG + chr6_1:48074194-48074213 None:intergenic 40.0%
ATTGTCCACCCATAGATGTT+CGG - chr6_1:48074198-48074217 Msa0887070:intron 40.0%
! ATCTGGAACATGAAGTTTGG+AGG + chr6_1:48074225-48074244 None:intergenic 40.0%
ATTGGACATCATCGATGTCA+TGG + chr6_1:48074392-48074411 None:intergenic 40.0%
ATGACATCGATGATGTCCAA+TGG - chr6_1:48074391-48074410 Msa0887070:intron 40.0%
!! CATTATACTGACTTGAGCGT+TGG + chr6_1:48074439-48074458 None:intergenic 40.0%
! AAGGATGTGGTATTGGGATT+CGG - chr6_1:48074510-48074529 Msa0887070:intron 40.0%
! TATTACTGGTTGTTCCGAAG+TGG + chr6_1:48074549-48074568 None:intergenic 40.0%
CTTCGGAACAACCAGTAATA+TGG - chr6_1:48074549-48074568 Msa0887070:intron 40.0%
! AAGTCCGACCCACATATTTT+GGG + chr6_1:48074608-48074627 None:intergenic 40.0%
! AATATCTGGAGCATGAGGTT+TGG + chr6_1:48074631-48074650 None:intergenic 40.0%
CACACATAGGACTGAATATC+TGG + chr6_1:48074645-48074664 None:intergenic 40.0%
TATTCAGTCCTATGTGTGTG+AGG - chr6_1:48074647-48074666 Msa0887070:intron 40.0%
GATCCCAAAAGCTAGATTGT+GGG + chr6_1:48074709-48074728 None:intergenic 40.0%
GTTACAATGCAATTCTTCCC+TGG + chr6_1:48075202-48075221 None:intergenic 40.0%
GGGAAGAATTGCATTGTAAC+AGG - chr6_1:48075202-48075221 Msa0887070:intron 40.0%
ATTGTAACAGGAGCAAACTC+TGG - chr6_1:48075214-48075233 Msa0887070:intron 40.0%
AAGATAGACATTTGCACCAC+TGG + chr6_1:48075362-48075381 None:intergenic 40.0%
GTATGTCGTAATAAGGAGAG+AGG - chr6_1:48075382-48075401 Msa0887070:intron 40.0%
! GTATTGCCGCCAATTCTTTT+AGG - chr6_1:48075463-48075482 Msa0887070:intron 40.0%
CAAACAGGCCCTAAAAGAAT+TGG + chr6_1:48075475-48075494 None:intergenic 40.0%
CCTAGAGAGCTTATGGAAAT+CGG + chr6_1:48075600-48075619 None:intergenic 40.0%
!! TTGGTAGTTACGGTCTTGTT+TGG + chr6_1:48075755-48075774 None:intergenic 40.0%
TTGTGATCTGTCATCTGTCA+AGG - chr6_1:48075902-48075921 Msa0887070:intron 40.0%
TGTCAAGGATATCAAGTCAC+TGG - chr6_1:48075917-48075936 Msa0887070:intron 40.0%
TAATTTACCAACACGTGCAC+TGG + chr6_1:48075969-48075988 None:intergenic 40.0%
ATGAAACACTAACACAGACG+CGG - chr6_1:48076017-48076036 Msa0887070:intron 40.0%
TGCATCAAGGTTAACAATGC+TGG - chr6_1:48076367-48076386 Msa0887070:CDS 40.0%
TTCCTCTATTCTACCTGTAG+TGG - chr6_1:48076460-48076479 Msa0887070:intron 40.0%
TTGTTTCGCGAAACACGATT+TGG + chr6_1:48076604-48076623 None:intergenic 40.0%
GATTTAGGCTAAAGCATAGC+GGG + chr6_1:48076643-48076662 None:intergenic 40.0%
CGATTTAGGCTAAAGCATAG+CGG + chr6_1:48076644-48076663 None:intergenic 40.0%
!! AGAGCAGTTTTGTCTGATAG+TGG + chr6_1:48076713-48076732 None:intergenic 40.0%
TTACGCCATGACTGAATTGA+TGG - chr6_1:48076792-48076811 Msa0887070:intron 40.0%
! TGAATTGATGGTACCGTTAC+TGG - chr6_1:48076804-48076823 Msa0887070:intron 40.0%
! CGTGTCATTACTGTTTCTTC+TGG - chr6_1:48076847-48076866 Msa0887070:intron 40.0%
! GTCATTACTGTTTCTTCTGG+TGG - chr6_1:48076850-48076869 Msa0887070:intron 40.0%
ACCTGTAGATCTTTGGTCAA+GGG + chr6_1:48076889-48076908 None:intergenic 40.0%
TACCTGTAGATCTTTGGTCA+AGG + chr6_1:48076890-48076909 None:intergenic 40.0%
CACAGTTACCTGTAGATCTT+TGG + chr6_1:48076896-48076915 None:intergenic 40.0%
! TATTCCGAGAGCAGCTTTAA+TGG - chr6_1:48076985-48077004 Msa0887070:intron 40.0%
! ATTCCGAGAGCAGCTTTAAT+GGG - chr6_1:48076986-48077005 Msa0887070:intron 40.0%
CTTGTTTCGAGCATACTGTA+AGG + chr6_1:48077013-48077032 None:intergenic 40.0%
ATAGCTATGAAACACTGGCA+CGG + chr6_1:48077196-48077215 None:intergenic 40.0%
! TCAATTAGTCTCCTAAGGCT+TGG + chr6_1:48077475-48077494 None:intergenic 40.0%
AAGCCTTAGGAGACTAATTG+AGG - chr6_1:48077474-48077493 Msa0887070:intron 40.0%
! CAACCTCAATTAGTCTCCTA+AGG + chr6_1:48077480-48077499 None:intergenic 40.0%
TTCCTACATTTGTAACTCGG+GGG + chr6_1:48077543-48077562 None:intergenic 40.0%
CTTCCTACATTTGTAACTCG+GGG + chr6_1:48077544-48077563 None:intergenic 40.0%
CCTTCCTACATTTGTAACTC+GGG + chr6_1:48077545-48077564 None:intergenic 40.0%
CCCTTCCTACATTTGTAACT+CGG + chr6_1:48077546-48077565 None:intergenic 40.0%
CCGAGTTACAAATGTAGGAA+GGG - chr6_1:48077543-48077562 Msa0887070:intron 40.0%
CGAGTTACAAATGTAGGAAG+GGG - chr6_1:48077544-48077563 Msa0887070:intron 40.0%
!! ACTTACGATTTTGAGAAGCC+TGG + chr6_1:48077844-48077863 None:intergenic 40.0%
CTATGTCGTGGGATACTTTA+GGG + chr6_1:48077981-48078000 None:intergenic 40.0%
TCTATGTCGTGGGATACTTT+AGG + chr6_1:48077982-48078001 None:intergenic 40.0%
TAATCCTTGATTTCGTAGCG+GGG - chr6_1:48078026-48078045 Msa0887070:intron 40.0%
!! GGCATGTGACTTTTATTTCG+TGG - chr6_1:48078047-48078066 Msa0887070:intron 40.0%
!! TGACTTTTATTTCGTGGGGA+TGG - chr6_1:48078053-48078072 Msa0887070:intron 40.0%
! GAAGTCAGATTCTTTTCGTG+GGG - chr6_1:48078107-48078126 Msa0887070:intron 40.0%
AAGCTTAGAACAAGCGAAGA+AGG - chr6_1:48078211-48078230 Msa0887070:intron 40.0%
ACTACAACCAAAGGAGAAGT+TGG - chr6_1:48078258-48078277 Msa0887070:intron 40.0%
! CATTGATAGTCTTCGATCCT+TGG - chr6_1:48078372-48078391 Msa0887070:intron 40.0%
GCATCTCTTTCGGCTTAAAT+AGG - chr6_1:48078394-48078413 Msa0887070:intron 40.0%
TACTTCTGCGCTAAACAGTT+AGG - chr6_1:48078422-48078441 Msa0887070:intron 40.0%
TCTAAACACGAACTGCAAAC+CGG + chr6_1:48078546-48078565 None:intergenic 40.0%
TGGAGTTGGGTTCAGTTGAA+GGG - chr6_1:48073488-48073507 Msa0887070:intron 45.0%
TTAAATGTGGTCACCTCTCC+TGG + chr6_1:48073556-48073575 None:intergenic 45.0%
!! ATAGTGGATGTGGGACTAAC+CGG + chr6_1:48073666-48073685 None:intergenic 45.0%
TGCTCCATAACCACAAGAGA+GGG + chr6_1:48073770-48073789 None:intergenic 45.0%
ATGCTCCATAACCACAAGAG+AGG + chr6_1:48073771-48073790 None:intergenic 45.0%
GTCTGAAAGTGGGAATGTTG+TGG + chr6_1:48073827-48073846 None:intergenic 45.0%
TTGGAGGACCGAACATCTAT+GGG + chr6_1:48074209-48074228 None:intergenic 45.0%
TTTGGAGGACCGAACATCTA+TGG + chr6_1:48074210-48074229 None:intergenic 45.0%
GGAAAGAAAGGTTCTGTGTG+TGG - chr6_1:48074358-48074377 Msa0887070:intron 45.0%
ACATCGATGATGTCCAATGG+TGG - chr6_1:48074394-48074413 Msa0887070:intron 45.0%
CATCGATGATGTCCAATGGT+GGG - chr6_1:48074395-48074414 Msa0887070:intron 45.0%
ATCGATGATGTCCAATGGTG+GGG - chr6_1:48074396-48074415 Msa0887070:intron 45.0%
GCAAGCACAAAAGTCCACTT+CGG - chr6_1:48074532-48074551 Msa0887070:intron 45.0%
CAACCCCAAAATATGTGGGT+CGG - chr6_1:48074601-48074620 Msa0887070:intron 45.0%
! AGTCCGACCCACATATTTTG+GGG + chr6_1:48074607-48074626 None:intergenic 45.0%
! GAAGTCCGACCCACATATTT+TGG + chr6_1:48074609-48074628 None:intergenic 45.0%
! GACTGAATATCTGGAGCATG+AGG + chr6_1:48074636-48074655 None:intergenic 45.0%
ATTCACCACCTCACACACAT+AGG + chr6_1:48074658-48074677 None:intergenic 45.0%
ATGTGTGTGAGGTGGTGAAT+CGG - chr6_1:48074658-48074677 Msa0887070:CDS 45.0%
CCAAAAGCTAGATTGTGGGA+GGG + chr6_1:48074705-48074724 None:intergenic 45.0%
!!! CCTCCCACAATCTAGCTTTT+GGG - chr6_1:48074703-48074722 Msa0887070:CDS 45.0%
CGATCCCAAAAGCTAGATTG+TGG + chr6_1:48074710-48074729 None:intergenic 45.0%
AGGAGCTTACGAGATCGAAT+TGG - chr6_1:48074991-48075010 Msa0887070:intron 45.0%
CAGTTATCGCCATGAAACCA+GGG + chr6_1:48075030-48075049 None:intergenic 45.0%
!! ACAGGAGCAAACTCTGGAAT+TGG - chr6_1:48075220-48075239 Msa0887070:intron 45.0%
! TGGTTAGTGATTTTCGCCAG+TGG - chr6_1:48075343-48075362 Msa0887070:intron 45.0%
TCGTAATAAGGAGAGAGGAG+AGG - chr6_1:48075387-48075406 Msa0887070:intron 45.0%
ACAGGCCCTAAAAGAATTGG+CGG + chr6_1:48075472-48075491 None:intergenic 45.0%
CCGATTTCCATAAGCTCTCT+AGG - chr6_1:48075597-48075616 Msa0887070:intron 45.0%
!! ATATCAAGTCACTGGCTTCC+AGG - chr6_1:48075925-48075944 Msa0887070:intron 45.0%
!!! TTTTGGTGTCGACGTGTAAG+TGG + chr6_1:48076058-48076077 None:intergenic 45.0%
CCAACACGTGTGGTTGTATT+CGG + chr6_1:48076090-48076109 None:intergenic 45.0%
GACCACTACAGGTAGAATAG+AGG + chr6_1:48076465-48076484 None:intergenic 45.0%
AGCAGATCAATGACCACTAC+AGG + chr6_1:48076476-48076495 None:intergenic 45.0%
! CGTTTCGGAAAGCACGATTT+AGG + chr6_1:48076658-48076677 None:intergenic 45.0%
! GATAGTGGCTAAAGCATAGC+AGG + chr6_1:48076698-48076717 None:intergenic 45.0%
CGGTACCATCAATTCAGTCA+TGG + chr6_1:48076800-48076819 None:intergenic 45.0%
AGTAATGACACGTGCATCAG+GGG + chr6_1:48076839-48076858 None:intergenic 45.0%
CAGTAATGACACGTGCATCA+GGG + chr6_1:48076840-48076859 None:intergenic 45.0%
ACAGTAATGACACGTGCATC+AGG + chr6_1:48076841-48076860 None:intergenic 45.0%
TCCCTTGACCAAAGATCTAC+AGG - chr6_1:48076885-48076904 Msa0887070:intron 45.0%
TAAAGCTGCTCTCGGAATAC+TGG + chr6_1:48076984-48077003 None:intergenic 45.0%
! AGTGTTGGATACTCGGATAC+TGG + chr6_1:48077095-48077114 None:intergenic 45.0%
! CTGTGTCAGTGTTGGATACT+CGG + chr6_1:48077102-48077121 None:intergenic 45.0%
GTATCCAACACTGACACAGA+TGG - chr6_1:48077103-48077122 Msa0887070:intron 45.0%
GTAACCATCTGTGTCAGTGT+TGG + chr6_1:48077110-48077129 None:intergenic 45.0%
GTTAAACCAAGCCAAGCCTT+AGG - chr6_1:48077461-48077480 Msa0887070:intron 45.0%
TTCCCCCGAGTTACAAATGT+AGG - chr6_1:48077538-48077557 Msa0887070:intron 45.0%
CCCGAGTTACAAATGTAGGA+AGG - chr6_1:48077542-48077561 Msa0887070:intron 45.0%
GGAAGGGGTTTAAATTGTGC+AGG - chr6_1:48077559-48077578 Msa0887070:intron 45.0%
! GGATTTTACTCGATGCATCC+AGG - chr6_1:48077784-48077803 Msa0887070:intron 45.0%
TTTACTCGATGCATCCAGGT+TGG - chr6_1:48077788-48077807 Msa0887070:intron 45.0%
TTACTCGATGCATCCAGGTT+GGG - chr6_1:48077789-48077808 Msa0887070:intron 45.0%
AGACGCTTTCTTCCCATGAA+TGG + chr6_1:48077915-48077934 None:intergenic 45.0%
ACTCAAAGGGTCTATGTCGT+GGG + chr6_1:48077992-48078011 None:intergenic 45.0%
! TCAGATTCTTTTCGTGGGGA+TGG - chr6_1:48078111-48078130 Msa0887070:intron 45.0%
CCAGATACCAACTTCTCCTT+TGG + chr6_1:48078268-48078287 None:intergenic 45.0%
!! CCAAAGGAGAAGTTGGTATC+TGG - chr6_1:48078265-48078284 Msa0887070:intron 45.0%
TCGATCCTTGGCATCTCTTT+CGG - chr6_1:48078384-48078403 Msa0887070:intron 45.0%
TTAAGCCGAAAGAGATGCCA+AGG + chr6_1:48078392-48078411 None:intergenic 45.0%
!! ATAATTAAATATTCAATTTA+AGG - chr6_1:48073897-48073916 Msa0887070:intron 5.0%
!! TAATTAAATATTCAATTTAA+GGG - chr6_1:48073898-48073917 Msa0887070:intron 5.0%
CAACTGAACCCAACTCCAGT+TGG + chr6_1:48073486-48073505 None:intergenic 50.0%
CTGGAGTTGGGTTCAGTTGA+AGG - chr6_1:48073487-48073506 Msa0887070:intron 50.0%
GGAGTTGGGTTCAGTTGAAG+GGG - chr6_1:48073489-48073508 Msa0887070:intron 50.0%
GTTCGAATTTCGACCAGGAG+AGG - chr6_1:48073540-48073559 Msa0887070:intron 50.0%
GTCTCCCTCTCTTGTGGTTA+TGG - chr6_1:48073763-48073782 Msa0887070:CDS 50.0%
! GCATTGACCTGTGTTGCTCT+CGG - chr6_1:48073787-48073806 Msa0887070:CDS 50.0%
! CATTGACCTGTGTTGCTCTC+GGG - chr6_1:48073788-48073807 Msa0887070:CDS 50.0%
! ATTGACCTGTGTTGCTCTCG+GGG - chr6_1:48073789-48073808 Msa0887070:CDS 50.0%
TCGATGATGTCCAATGGTGG+GGG - chr6_1:48074397-48074416 Msa0887070:intron 50.0%
!!! CGACCCACATATTTTGGGGT+TGG + chr6_1:48074603-48074622 None:intergenic 50.0%
TCAGTCCTATGTGTGTGAGG+TGG - chr6_1:48074650-48074669 Msa0887070:CDS 50.0%
!!! CCCTCCCACAATCTAGCTTT+TGG - chr6_1:48074702-48074721 Msa0887070:CDS 50.0%
CCCAAAAGCTAGATTGTGGG+AGG + chr6_1:48074706-48074725 None:intergenic 50.0%
CGTGCTTTCACCCAAAGAGA+AGG + chr6_1:48074869-48074888 None:intergenic 50.0%
TGTGACTGACCCTGGTTTCA+TGG - chr6_1:48075018-48075037 Msa0887070:intron 50.0%
GCAGTTATCGCCATGAAACC+AGG + chr6_1:48075031-48075050 None:intergenic 50.0%
AATTGGTTATGCGGCAGCTG+AGG - chr6_1:48075237-48075256 Msa0887070:intron 50.0%
ATTGGTTATGCGGCAGCTGA+GGG - chr6_1:48075238-48075257 Msa0887070:intron 50.0%
GAATGTTCCAGTGCACGTGT+TGG - chr6_1:48075959-48075978 Msa0887070:intron 50.0%
CCGAATACAACCACACGTGT+TGG - chr6_1:48076087-48076106 Msa0887070:intron 50.0%
! ACAACCACACGTGTTGGTCT+TGG - chr6_1:48076093-48076112 Msa0887070:intron 50.0%
GGGGAAGCTTTCTCCAGTAA+CGG + chr6_1:48076820-48076839 None:intergenic 50.0%
GGTCCCATTAAAGCTGCTCT+CGG + chr6_1:48076992-48077011 None:intergenic 50.0%
TGCTCGAAACAAGCGTGTTC+AGG - chr6_1:48077020-48077039 Msa0887070:intron 50.0%
TAGTCTCCTAAGGCTTGGCT+TGG + chr6_1:48077470-48077489 None:intergenic 50.0%
GACTCAAAGGGTCTATGTCG+TGG + chr6_1:48077993-48078012 None:intergenic 50.0%
CTTGGAGTCGTGTATTTGGG+AGG + chr6_1:48078083-48078102 None:intergenic 50.0%
! TTAGGATTTAGGACCACCCC+TGG + chr6_1:48078152-48078171 None:intergenic 50.0%
TAGAACAAGCGAAGAAGGCG+CGG - chr6_1:48078216-48078235 Msa0887070:intron 50.0%
CTGGTTGGCACTACAACCAA+AGG - chr6_1:48078249-48078268 Msa0887070:intron 50.0%
TGTTGCGTCTCCCTCTCTTG+TGG - chr6_1:48073757-48073776 Msa0887070:CDS 55.0%
GGGAATGTTGTGGAGACCGA+GGG + chr6_1:48073817-48073836 None:intergenic 55.0%
TGGGAATGTTGTGGAGACCG+AGG + chr6_1:48073818-48073837 None:intergenic 55.0%
GAGGACCGAACATCTATGGG+TGG + chr6_1:48074206-48074225 None:intergenic 55.0%
! TGGAAGTACACCCCCACCAT+TGG + chr6_1:48074410-48074429 None:intergenic 55.0%
!! GACTTGAGCGTTGGAGTGCA+TGG + chr6_1:48074430-48074449 None:intergenic 55.0%
TTGGTGTGTGTGACTGACCC+TGG - chr6_1:48075010-48075029 Msa0887070:intron 55.0%
GTGTCCAAGACCAACACGTG+TGG + chr6_1:48076100-48076119 None:intergenic 55.0%
GTAACTCGGGGGAATCTTCG+AGG + chr6_1:48077532-48077551 None:intergenic 55.0%
CATGCCCCGCTACGAAATCA+AGG + chr6_1:48078033-48078052 None:intergenic 55.0%
TGGTCTACCTCCCACTTACC+AGG - chr6_1:48078131-48078150 Msa0887070:intron 55.0%
GGTCTACCTCCCACTTACCA+GGG - chr6_1:48078132-48078151 Msa0887070:intron 55.0%
GTCTACCTCCCACTTACCAG+GGG - chr6_1:48078133-48078152 Msa0887070:intron 55.0%
TAGGACCACCCCTGGTAAGT+GGG + chr6_1:48078144-48078163 None:intergenic 55.0%
TTAGGACCACCCCTGGTAAG+TGG + chr6_1:48078145-48078164 None:intergenic 55.0%
TGTTGCTCTCGGGGTTCCCT+CGG - chr6_1:48073798-48073817 Msa0887070:CDS 60.0%
CAGCTGAGGGTCTTGCACAG+CGG - chr6_1:48075251-48075270 Msa0887070:intron 60.0%
TACCTCCCACTTACCAGGGG+TGG - chr6_1:48078136-48078155 Msa0887070:intron 60.0%
! AAGCGAAGAAGGCGCGGACA+CGG - chr6_1:48078222-48078241 Msa0887070:intron 60.0%
AAGGCGCGGACACGGTTATC+TGG - chr6_1:48078230-48078249 Msa0887070:intron 60.0%
CGCGGACACGGTTATCTGGT+TGG - chr6_1:48078234-48078253 Msa0887070:intron 60.0%
GGGAACCCCGAGAGCAACAC+AGG + chr6_1:48073797-48073816 None:intergenic 65.0%
!! CCAGGAGTGTCAGCCCAACC+TGG + chr6_1:48077805-48077824 None:intergenic 65.0%
! CCAGGTTGGGCTGACACTCC+TGG - chr6_1:48077802-48077821 Msa0887070:intron 65.0%
GACCACCCCTGGTAAGTGGG+AGG + chr6_1:48078141-48078160 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 48072826 48078730 48072826 ID=Msa0887070;Name=Msa0887070
chr6_1 mRNA 48072826 48078730 48072826 ID=Msa0887070-mRNA-1;Parent=Msa0887070;Name=Msa0887070-mRNA-1;_AED=0.26;_eAED=0.26;_QI=39|0.5|0.66|0.88|0.5|0.55|9|288|256
chr6_1 exon 48072826 48073009 48072826 ID=Msa0887070-mRNA-1:exon:10021;Parent=Msa0887070-mRNA-1
chr6_1 exon 48073041 48073355 48073041 ID=Msa0887070-mRNA-1:exon:10020;Parent=Msa0887070-mRNA-1
chr6_1 exon 48073699 48073820 48073699 ID=Msa0887070-mRNA-1:exon:10019;Parent=Msa0887070-mRNA-1
chr6_1 exon 48074650 48074800 48074650 ID=Msa0887070-mRNA-1:exon:10018;Parent=Msa0887070-mRNA-1
chr6_1 exon 48075131 48075180 48075131 ID=Msa0887070-mRNA-1:exon:10017;Parent=Msa0887070-mRNA-1
chr6_1 exon 48076175 48076193 48076175 ID=Msa0887070-mRNA-1:exon:10016;Parent=Msa0887070-mRNA-1
chr6_1 exon 48076284 48076403 48076284 ID=Msa0887070-mRNA-1:exon:10015;Parent=Msa0887070-mRNA-1
chr6_1 exon 48077300 48077313 48077300 ID=Msa0887070-mRNA-1:exon:10014;Parent=Msa0887070-mRNA-1
chr6_1 exon 48078608 48078730 48078608 ID=Msa0887070-mRNA-1:exon:10013;Parent=Msa0887070-mRNA-1
chr6_1 five_prime_UTR 48078692 48078730 48078692 ID=Msa0887070-mRNA-1:five_prime_utr;Parent=Msa0887070-mRNA-1
chr6_1 CDS 48078608 48078691 48078608 ID=Msa0887070-mRNA-1:cds;Parent=Msa0887070-mRNA-1
chr6_1 CDS 48077300 48077313 48077300 ID=Msa0887070-mRNA-1:cds;Parent=Msa0887070-mRNA-1
chr6_1 CDS 48076284 48076403 48076284 ID=Msa0887070-mRNA-1:cds;Parent=Msa0887070-mRNA-1
chr6_1 CDS 48076175 48076193 48076175 ID=Msa0887070-mRNA-1:cds;Parent=Msa0887070-mRNA-1
chr6_1 CDS 48075131 48075180 48075131 ID=Msa0887070-mRNA-1:cds;Parent=Msa0887070-mRNA-1
chr6_1 CDS 48074650 48074800 48074650 ID=Msa0887070-mRNA-1:cds;Parent=Msa0887070-mRNA-1
chr6_1 CDS 48073699 48073820 48073699 ID=Msa0887070-mRNA-1:cds;Parent=Msa0887070-mRNA-1
chr6_1 CDS 48073145 48073355 48073145 ID=Msa0887070-mRNA-1:cds;Parent=Msa0887070-mRNA-1
chr6_1 three_prime_UTR 48073041 48073144 48073041 ID=Msa0887070-mRNA-1:three_prime_utr;Parent=Msa0887070-mRNA-1
chr6_1 three_prime_UTR 48072826 48073009 48072826 ID=Msa0887070-mRNA-1:three_prime_utr;Parent=Msa0887070-mRNA-1
Gene Sequence

>Msa0887070

ATGAAAAAAAGTGGAACATTGCAATTACAACTTCAGTTTCACTTCTCCTTTAACATTGTATCTCTCATTATGTTTCTTATCAAGATGTTCAATAGTAGCGAGCATTCTAAGAATTTCAAACCAGAGGAAACAGAAACACAAATACCAGGGAAGAATTGCATTGTAACAGGAGCAAACTCTGGAATTGGTTATGCGGCAGCTGAGGGTCTTGCACAGCGTGGTGCAAATGTCTATCTTGTTAACAATGCTGGCTTGCTTGAGCAAAATCGAGTTACTACATCAGAAGGGTTTGAGTTGAACTTTGCTGTCAATGTATTAGGCACTTACGCCATGACTGAATTGATGGTACCGTTACTGGAGAAAGCTTCCCCTGATGCACGTGTCATTACTGTTTCTTCTGGTGGAATGTATAGTACTCCCTTGACCAAAGATCTACAGGTTGCACTAACAGAAAATTGGGGTGAAACATACAAGAACAAAGGGATAGGATTTTACTCGATGCATCCAGGTTGGGCTGACACTCCTGGTGTTGCAAAAAGTTTGCCAGGCTTCTCAAAATCGCTTGCAGGGAAGCTTAGAACAAGCGAAGAAGGCGCGGACACGGTTATCTGGTTGGCACTACAACCAAAGGAGAAGTTGGTATCTGGTGCATTTTATTTTGATAGAGCTGAAGCTCCCAAACACCTTTCATTTAATGCTACAAGTGGTTCTCATACTGTGATCAACTCTGTCATTGATAGTCTTCGATCCTTGGCATCTCTTTCGGCTTAA

Protein sequence

>Msa0887070

MKKSGTLQLQLQFHFSFNIVSLIMFLIKMFNSSEHSKNFKPEETETQIPGKNCIVTGANSGIGYAAAEGLAQRGANVYLVNNAGLLEQNRVTTSEGFELNFAVNVLGTYAMTELMVPLLEKASPDARVITVSSGGMYSTPLTKDLQVALTENWGETYKNKGIGFYSMHPGWADTPGVAKSLPGFSKSLAGKLRTSEEGADTVIWLALQPKEKLVSGAFYFDRAEAPKHLSFNATSGSHTVINSVIDSLRSLASLSA*