AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1118140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1118140 MtrunA17_Chr7g0254411 95.833 264 6 4 1 261 77 338 2.44e-180 499
Msa1118140 MtrunA17_Chr3g0092401 35.316 269 119 9 1 258 78 302 6.44e-29 111
Msa1118140 MtrunA17_Chr4g0060721 45.270 148 50 4 1 118 78 224 4.22e-26 104
Msa1118140 MtrunA17_Chr7g0217221 45.255 137 46 4 1 108 77 213 8.88e-25 99.8
Msa1118140 MtrunA17_Chr6g0453211 29.373 303 102 11 1 258 77 312 8.87e-21 89.7
Msa1118140 MtrunA17_Chr4g0042671 65.306 49 15 1 2 50 78 124 9.56e-15 73.2
Msa1118140 MtrunA17_Chr5g0395281 67.347 49 14 1 1 49 77 123 1.02e-14 72.4
Msa1118140 MtrunA17_Chr7g0247131 63.265 49 16 1 1 49 43 89 1.47e-14 71.6
Msa1118140 MtrunA17_Chr1g0203411 36.054 147 27 3 2 81 78 224 1.59e-14 72.0
Msa1118140 MtrunA17_Chr7g0217741 64.583 48 15 1 2 49 78 123 2.10e-14 71.6
Msa1118140 MtrunA17_Chr6g0453471 66.667 48 14 1 2 49 78 123 2.24e-14 72.0
Msa1118140 MtrunA17_Chr7g0240821 51.667 60 29 0 1 60 66 125 3.58e-14 70.1
Msa1118140 MtrunA17_Chr3g0131121 46.429 84 36 3 1 78 77 157 4.47e-14 70.5
Msa1118140 MtrunA17_Chr4g0039971 68.750 48 13 1 2 49 79 124 4.66e-14 70.9
Msa1118140 MtrunA17_Chr1g0180391 35.036 137 83 3 1 137 84 214 5.33e-14 69.3
Msa1118140 MtrunA17_Chr3g0115821 74.359 39 10 0 2 40 78 116 7.24e-14 70.5
Msa1118140 MtrunA17_Chr1g0167661 38.384 99 55 1 1 99 77 169 7.94e-14 69.3
Msa1118140 MtrunA17_Chr5g0435101 58.824 51 19 1 1 51 76 124 8.02e-14 68.6
Msa1118140 MtrunA17_Chr4g0037141 37.500 96 57 2 1 95 77 170 9.62e-14 69.3
Msa1118140 MtrunA17_Chr2g0281071 59.615 52 19 1 2 53 79 128 2.08e-13 68.9
Msa1118140 MtrunA17_Chr2g0323411 57.692 52 20 1 2 53 78 127 2.66e-13 68.6
Msa1118140 MtrunA17_Chr8g0346561 60.417 48 19 0 1 48 77 124 2.94e-13 68.2
Msa1118140 MtrunA17_Chr8g0349261 61.224 49 17 1 1 49 79 125 3.04e-13 68.2
Msa1118140 MtrunA17_Chr5g0434571 40.385 104 55 2 1 97 113 216 3.98e-13 68.2
Msa1118140 MtrunA17_Chr4g0068061 53.846 52 24 0 1 52 77 128 5.02e-13 67.8
Msa1118140 MtrunA17_Chr8g0385321 58.000 50 19 1 1 50 77 124 6.17e-13 67.4
Msa1118140 MtrunA17_Chr4g0048511 60.417 48 17 1 2 49 79 124 6.20e-13 67.8
Msa1118140 MtrunA17_Chr4g0032401 51.786 56 27 0 2 57 83 138 7.94e-13 67.4
Msa1118140 MtrunA17_Chr4g0044421 56.863 51 20 1 1 51 77 125 8.61e-13 65.5
Msa1118140 MtrunA17_Chr3g0110351 63.265 49 16 1 1 49 77 123 1.02e-12 67.0
Msa1118140 MtrunA17_Chr4g0058631 42.045 88 46 2 1 88 77 159 1.41e-12 66.6
Msa1118140 MtrunA17_Chr1g0187761 68.293 41 13 0 2 42 78 118 2.98e-12 65.1
Msa1118140 MtrunA17_Chr8g0343831 69.048 42 13 0 1 42 73 114 3.31e-12 64.7
Msa1118140 MtrunA17_Chr2g0328771 48.214 56 29 0 1 56 85 140 3.83e-12 65.1
Msa1118140 MtrunA17_Chr7g0274581 63.415 41 15 0 2 42 78 118 4.58e-12 63.5
Msa1118140 MtrunA17_Chr5g0410961 59.184 49 18 1 1 49 77 123 4.78e-12 65.1
Msa1118140 MtrunA17_Chr4g0057031 61.224 49 17 1 1 49 77 123 5.21e-12 64.3
Msa1118140 MtrunA17_Chr7g0275911 65.000 40 14 0 1 40 77 116 6.00e-12 63.9
Msa1118140 MtrunA17_Chr1g0211161 60.000 50 18 1 1 50 78 125 9.99e-12 63.2
Msa1118140 MtrunA17_Chr3g0121241 57.143 49 19 1 1 49 107 153 1.15e-11 63.5
Msa1118140 MtrunA17_Chr7g0228891 64.000 50 16 2 2 51 78 125 1.28e-11 63.2
Msa1118140 MtrunA17_Chr5g0417821 57.143 49 19 1 2 50 73 119 1.46e-11 63.2
Msa1118140 MtrunA17_Chr4g0055981 50.000 60 28 1 1 60 120 177 1.73e-11 62.4
Msa1118140 MtrunA17_Chr5g0434871 60.000 40 16 0 1 40 5 44 1.83e-11 58.5
Msa1118140 MtrunA17_Chr8g0387421 61.905 42 16 0 1 42 77 118 2.12e-11 63.2
Msa1118140 MtrunA17_Chr7g0228991 44.444 72 25 1 1 57 94 165 2.28e-11 62.8
Msa1118140 MtrunA17_Chr4g0070641 65.000 40 14 0 1 40 77 116 3.29e-11 60.5
Msa1118140 MtrunA17_Chr5g0434911 62.500 40 15 0 1 40 86 125 3.44e-11 62.0
Msa1118140 MtrunA17_Chr6g0452271 55.102 49 20 1 1 49 77 123 4.37e-11 62.4
Msa1118140 MtrunA17_Chr3g0117091 58.000 50 19 1 1 50 77 124 4.85e-11 62.0
Msa1118140 MtrunA17_Chr4g0070611 65.000 40 14 0 1 40 77 116 5.56e-11 61.6
Msa1118140 MtrunA17_Chr1g0193371 55.102 49 20 1 1 49 77 123 6.89e-11 61.6
Msa1118140 MtrunA17_Chr5g0434931 41.667 72 27 1 1 57 100 171 8.25e-11 60.8
Msa1118140 MtrunA17_Chr3g0088461 60.000 40 16 0 1 40 87 126 8.98e-11 61.2
Msa1118140 MtrunA17_Chr1g0151941 55.102 49 22 0 1 49 78 126 9.23e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1118140 AT3G28910.2 41.975 162 42 4 1 114 1 158 5.14e-27 105
Msa1118140 AT3G28910.1 41.975 162 42 4 1 114 77 234 3.22e-26 104
Msa1118140 AT1G74650.3 45.205 146 36 5 1 106 1 142 4.54e-23 95.1
Msa1118140 AT1G74650.1 45.205 146 36 5 1 106 77 218 1.55e-22 95.1
Msa1118140 AT3G47600.2 52.747 91 28 2 1 91 71 146 1.06e-21 92.8
Msa1118140 AT3G47600.1 52.747 91 28 2 1 91 77 152 1.25e-21 92.4
Msa1118140 AT5G62470.1 70.909 55 16 0 2 56 77 131 7.91e-20 87.8
Msa1118140 AT5G62470.2 70.909 55 16 0 2 56 78 132 8.31e-20 87.8
Msa1118140 AT1G35515.1 34.677 124 67 3 1 123 77 187 1.11e-16 77.0
Msa1118140 AT5G15310.4 68.750 48 13 1 2 49 78 123 4.18e-15 73.2
Msa1118140 AT5G15310.2 68.750 48 13 1 2 49 78 123 4.85e-15 73.9
Msa1118140 AT5G15310.1 68.750 48 13 1 2 49 78 123 5.04e-15 73.9
Msa1118140 AT3G01140.2 68.750 48 13 1 2 49 78 123 7.04e-15 73.6
Msa1118140 AT1G74650.2 40.741 135 36 5 12 106 7 137 7.76e-15 72.4
Msa1118140 AT3G01140.1 68.750 48 13 1 2 49 121 166 9.06e-15 73.6
Msa1118140 AT4G12350.1 53.947 76 29 3 1 76 77 146 9.21e-15 72.8
Msa1118140 AT1G22640.3 61.224 49 17 1 1 49 20 66 1.32e-13 68.2
Msa1118140 AT1G66230.1 33.333 135 77 3 1 135 77 198 1.44e-13 69.3
Msa1118140 AT4G09460.1 38.462 104 54 3 1 97 77 177 1.44e-13 68.6
Msa1118140 AT3G61250.1 63.265 49 16 1 1 49 77 123 1.67e-13 69.3
Msa1118140 AT4G34990.1 60.000 50 18 1 1 50 77 124 2.12e-13 68.9
Msa1118140 AT2G16720.1 60.000 50 18 1 1 50 77 124 2.68e-13 68.6
Msa1118140 AT5G54230.1 66.667 48 14 1 2 49 78 123 2.85e-13 68.9
Msa1118140 AT4G17785.2 62.500 48 16 1 2 49 79 124 3.25e-13 68.9
Msa1118140 AT4G17785.1 30.000 200 107 7 2 198 79 248 3.25e-13 68.9
Msa1118140 AT1G22640.1 61.224 49 17 1 1 49 77 123 3.38e-13 68.2
Msa1118140 AT4G38620.1 56.863 51 20 1 1 51 77 125 3.73e-13 68.2
Msa1118140 AT3G02940.2 62.500 48 16 1 2 49 78 123 6.60e-13 67.8
Msa1118140 AT3G02940.1 62.500 48 16 1 2 49 78 123 7.16e-13 67.8
Msa1118140 AT3G02940.3 62.500 48 16 1 2 49 78 123 7.16e-13 67.8
Msa1118140 AT5G65230.1 74.359 39 10 0 2 40 78 116 8.64e-13 67.4
Msa1118140 AT4G05100.1 57.692 52 20 1 2 53 79 128 9.44e-13 67.4
Msa1118140 AT5G16770.4 64.583 48 15 1 2 49 78 123 9.68e-13 67.4
Msa1118140 AT5G16770.3 64.583 48 15 1 2 49 78 123 9.68e-13 67.4
Msa1118140 AT5G16770.1 64.583 48 15 1 2 49 78 123 1.09e-12 67.4
Msa1118140 AT5G16770.2 64.583 48 15 1 2 49 78 123 1.09e-12 67.4
Msa1118140 AT5G61420.2 61.224 49 17 1 1 49 77 123 1.12e-12 67.4
Msa1118140 AT1G34670.1 54.098 61 26 1 2 62 78 136 1.22e-12 67.4
Msa1118140 AT3G13540.1 57.143 49 19 1 1 49 88 134 1.32e-12 66.2
Msa1118140 AT4G21440.1 60.417 48 17 1 2 49 78 123 1.35e-12 67.0
Msa1118140 AT5G49330.1 56.522 46 20 0 1 46 77 122 1.45e-12 67.0
Msa1118140 AT1G09540.1 42.553 94 46 3 1 94 77 162 1.57e-12 67.0
Msa1118140 AT4G22680.1 44.828 87 40 2 1 79 77 163 1.99e-12 65.9
Msa1118140 AT5G62320.1 59.184 49 18 1 1 49 85 131 2.11e-12 65.5
Msa1118140 AT1G18570.1 66.667 48 14 1 2 49 79 124 2.36e-12 66.6
Msa1118140 AT5G16600.1 62.500 48 16 1 2 49 78 123 3.44e-12 65.9
Msa1118140 AT1G79180.1 42.105 95 48 2 2 95 80 168 3.65e-12 65.5
Msa1118140 AT5G07700.1 67.500 40 13 0 1 40 77 116 3.99e-12 65.9
Msa1118140 AT5G07700.2 67.500 40 13 0 1 40 77 116 3.99e-12 65.9
Msa1118140 AT4G28110.1 56.250 48 19 1 2 49 78 123 4.39e-12 65.1
Msa1118140 AT1G56160.1 71.795 39 11 0 2 40 80 118 4.44e-12 65.1
Msa1118140 AT1G74430.1 56.667 60 22 2 2 59 78 135 4.94e-12 64.7
Msa1118140 AT5G14750.4 65.000 40 14 0 1 40 20 59 5.09e-12 62.4
Msa1118140 AT5G14750.2 65.000 40 14 0 1 40 20 59 5.09e-12 62.4
Msa1118140 AT5G52600.1 44.776 67 32 1 1 67 77 138 5.60e-12 63.5
Msa1118140 AT1G79180.2 42.105 95 48 2 2 95 113 201 5.96e-12 65.1
Msa1118140 AT5G60890.1 60.345 58 20 1 2 56 78 135 8.62e-12 64.3
Msa1118140 AT5G14750.3 65.000 40 14 0 1 40 47 86 1.01e-11 62.4
Msa1118140 AT5G07690.1 61.224 49 17 1 1 49 77 123 1.02e-11 64.3
Msa1118140 AT3G23250.2 60.465 43 17 0 2 44 21 63 1.02e-11 63.5
Msa1118140 AT5G10280.1 69.231 39 12 0 2 40 78 116 1.09e-11 64.3
Msa1118140 AT5G61420.1 62.222 45 15 1 5 49 2 44 1.34e-11 63.9
Msa1118140 AT1G63910.1 61.364 44 17 0 1 44 77 120 1.50e-11 64.3
Msa1118140 AT5G40330.1 63.415 41 15 0 1 41 77 117 1.90e-11 62.4
Msa1118140 AT5G14750.1 65.000 40 14 0 1 40 81 120 1.91e-11 62.4
Msa1118140 AT3G23250.1 39.362 94 54 1 2 95 78 168 2.37e-11 63.2
Msa1118140 AT3G27920.1 65.000 40 14 0 1 40 79 118 2.44e-11 62.4
Msa1118140 AT3G30210.1 39.048 105 42 3 1 92 92 187 2.75e-11 62.8
Msa1118140 AT1G74080.1 60.417 48 17 1 2 49 78 123 2.75e-11 63.2
Msa1118140 AT3G12820.2 68.293 41 13 0 2 42 32 72 2.94e-11 61.6
Msa1118140 AT5G56110.1 44.444 63 33 1 1 63 77 137 3.64e-11 62.8
Msa1118140 AT2G47460.1 55.814 43 19 0 1 43 77 119 3.66e-11 63.2
Msa1118140 AT5G35550.1 37.607 117 57 4 1 102 79 194 3.74e-11 62.0
Msa1118140 AT5G26660.2 56.000 50 20 1 1 50 46 93 4.26e-11 62.4
Msa1118140 AT5G26660.1 56.000 50 20 1 1 50 77 124 4.48e-11 62.8
Msa1118140 AT1G71030.2 50.980 51 23 1 1 51 31 79 4.49e-11 60.8
Msa1118140 AT5G55020.1 64.286 42 15 0 1 42 91 132 4.62e-11 63.2
Msa1118140 AT4G01680.3 41.558 77 43 1 1 77 77 151 4.93e-11 61.6
Msa1118140 AT1G71030.1 50.980 51 23 1 1 51 45 93 5.33e-11 60.8
Msa1118140 AT1G06180.1 69.231 39 12 0 2 40 78 116 5.40e-11 61.6
Msa1118140 AT3G12820.1 68.293 41 13 0 2 42 80 120 5.80e-11 61.2
Msa1118140 AT5G35550.2 37.607 117 57 4 1 102 82 197 5.99e-11 61.6
Msa1118140 AT3G12720.1 56.000 50 20 1 1 50 87 134 9.09e-11 61.6
Msa1118140 AT2G32460.1 66.667 39 13 0 1 39 83 121 9.92e-11 62.0

Find 56 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCTTTGATTTGTGAATT+TGG 0.199005 7_3:-66724193 None:intergenic
ATCAAATAAACCCTTAAGTT+TGG 0.212983 7_3:+66724671 Msa1118140:three_prime_UTR
AATAATGAGTTTGAAAATAA+TGG 0.215629 7_3:+66724271 Msa1118140:CDS
ATTTCTTGAGAAATGGTTAT+TGG 0.262736 7_3:+66724573 Msa1118140:CDS
ATTCATTTGCAAGCTCTTCT+TGG 0.274251 7_3:+66723607 Msa1118140:CDS
ATAATGATATAAAGAATTAT+TGG 0.287254 7_3:+66723936 Msa1118140:CDS
GTTGATGTTGTTGAGTTTGA+TGG 0.293043 7_3:-66724007 None:intergenic
TATTGTATTCATTACTATAT+AGG 0.299916 7_3:-66724954 None:intergenic
AAGTTTCCTCTCTTGATTCC+TGG 0.303513 7_3:-66723559 None:intergenic
TCCATGACATCCCAAACTTA+AGG 0.327303 7_3:-66724682 None:intergenic
GCAAAAGTTGCAGGCTTAGA+TGG 0.333849 7_3:+66723521 Msa1118140:five_prime_UTR
TCAAATAAACCCTTAAGTTT+GGG 0.336396 7_3:+66724672 Msa1118140:three_prime_UTR
CCATGACATCCCAAACTTAA+GGG 0.344710 7_3:-66724681 None:intergenic
CAAGATGCAGCAAAAGTTGC+AGG 0.352122 7_3:+66723512 Msa1118140:five_prime_UTR
CTTTGTCATTTCTTGAGAAA+TGG 0.355094 7_3:+66724566 Msa1118140:CDS
GTTGAGGAATCTTAGAAGTT+AGG 0.359158 7_3:+66724805 Msa1118140:three_prime_UTR
ATCAAAGGAAATTATCAATA+TGG 0.380001 7_3:+66724205 Msa1118140:CDS
TGGAAATTATTCAAATGATA+TGG 0.389775 7_3:+66724701 Msa1118140:three_prime_UTR
ATAATGAGTTTGAAAATAAT+GGG 0.390834 7_3:+66724272 Msa1118140:CDS
ATCTTGTAATAATTCACCTT+TGG 0.395893 7_3:-66724371 None:intergenic
TGAGAATATTTCAAGGCTCT+TGG 0.400491 7_3:+66724150 Msa1118140:CDS
TGATTCTATGCCTCATGAAA+AGG 0.413934 7_3:+66724480 Msa1118140:CDS
ATTTCAAGGTTTAAATCAGC+TGG 0.419722 7_3:-66724322 None:intergenic
TCTTAACAATGGTGCTGCTT+GGG 0.425880 7_3:+66724444 Msa1118140:CDS
GATGATGATGATGGATTTCA+AGG 0.431161 7_3:-66724336 None:intergenic
TTTCAAGGCTCTTGGAAGGT+TGG 0.431717 7_3:+66724158 Msa1118140:CDS
ATATCATTATCTGTTCTTTG+AGG 0.437222 7_3:-66723923 None:intergenic
ATCTTAACAATGGTGCTGCT+TGG 0.440647 7_3:+66724443 Msa1118140:CDS
CCCTTAAGTTTGGGATGTCA+TGG 0.446799 7_3:+66724681 Msa1118140:three_prime_UTR
ACTTCTGTCACTAAAACTCT+TGG 0.456896 7_3:-66724038 None:intergenic
CAAGCACTGAGAATATTTCA+AGG 0.465798 7_3:+66724143 Msa1118140:CDS
ATTCTCTGATTATAAGACTA+GGG 0.474205 7_3:+66724761 Msa1118140:three_prime_UTR
ATTCTCAGTGCTTGAAGCAT+AGG 0.476717 7_3:-66724134 None:intergenic
GATTCTATGCCTCATGAAAA+GGG 0.497194 7_3:+66724481 Msa1118140:CDS
TGGTCATGTGGAGGAAATGA+TGG 0.517500 7_3:+66724606 Msa1118140:CDS
TGGACAAATTATCTGAGGCC+AGG 0.519859 7_3:+66723541 Msa1118140:five_prime_UTR
AACTTCACTCCTCATGAAGA+AGG 0.522302 7_3:+66723577 Msa1118140:five_prime_UTR
AATTCTCTGATTATAAGACT+AGG 0.534470 7_3:+66724760 Msa1118140:three_prime_UTR
TGGTTATTGGATGAAAATGT+TGG 0.542744 7_3:+66724586 Msa1118140:CDS
TTGAGGAAGATATGAAGCTA+TGG 0.544973 7_3:-66723906 None:intergenic
TCTCTTGCAAGTTAGAACAT+TGG 0.550675 7_3:-66724637 None:intergenic
AATATTTCAAGGCTCTTGGA+AGG 0.554523 7_3:+66724154 Msa1118140:CDS
CATCACAAAATTAGCACCAA+AGG 0.556864 7_3:+66724355 Msa1118140:CDS
TCAAGAAATGACAAAGGAGG+AGG 0.572364 7_3:-66724559 None:intergenic
TCACCAAATTCACAAATCAA+AGG 0.573898 7_3:+66724190 Msa1118140:CDS
ATAAGCTTAATTAGTGCATG+TGG 0.574936 7_3:+66724888 Msa1118140:three_prime_UTR
AAAGGTGAATTATTACAAGA+TGG 0.575052 7_3:+66724373 Msa1118140:CDS
ATAATCATTCCTTCTTCATG+AGG 0.593329 7_3:-66723586 None:intergenic
GGTGAATTATTACAAGATGG+TGG 0.593963 7_3:+66724376 Msa1118140:CDS
TCATTTGAGAATCTTAACAA+TGG 0.601738 7_3:+66724433 Msa1118140:CDS
TTCTCAAGAAATGACAAAGG+AGG 0.634582 7_3:-66724562 None:intergenic
GGATGAAAATGTTGGTCATG+TGG 0.647965 7_3:+66724594 Msa1118140:CDS
TTAGATGGACAAATTATCTG+AGG 0.649808 7_3:+66723536 Msa1118140:five_prime_UTR
CTGAGGCCAGGAATCAAGAG+AGG 0.658257 7_3:+66723553 Msa1118140:five_prime_UTR
TGAAAATGTTGGTCATGTGG+AGG 0.708741 7_3:+66724597 Msa1118140:CDS
CATTTCTCAAGAAATGACAA+AGG 0.708797 7_3:-66724565 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAATTAATATAAAACA+AGG - chr7_3:66723788-66723807 None:intergenic 10.0%
!! ATAATGATATAAAGAATTAT+TGG + chr7_3:66723936-66723955 Msa1118140:CDS 10.0%
!!! GTTTAATTTTTATATTACAT+GGG + chr7_3:66724783-66724802 Msa1118140:three_prime_UTR 10.0%
!! AATCAAATTAATATAAAACA+AGG - chr7_3:66723788-66723807 None:intergenic 10.0%
!! ATAATGATATAAAGAATTAT+TGG + chr7_3:66723936-66723955 Msa1118140:CDS 10.0%
!!! GTTTAATTTTTATATTACAT+GGG + chr7_3:66724783-66724802 Msa1118140:three_prime_UTR 10.0%
!! AATAATGAGTTTGAAAATAA+TGG + chr7_3:66724271-66724290 Msa1118140:CDS 15.0%
!! ATAATGAGTTTGAAAATAAT+GGG + chr7_3:66724272-66724291 Msa1118140:CDS 15.0%
!!! GGTTTAATTTTTATATTACA+TGG + chr7_3:66724782-66724801 Msa1118140:three_prime_UTR 15.0%
!! TATTGTATTCATTACTATAT+AGG - chr7_3:66724957-66724976 None:intergenic 15.0%
!! AATAATGAGTTTGAAAATAA+TGG + chr7_3:66724271-66724290 Msa1118140:CDS 15.0%
!! ATAATGAGTTTGAAAATAAT+GGG + chr7_3:66724272-66724291 Msa1118140:CDS 15.0%
!!! GGTTTAATTTTTATATTACA+TGG + chr7_3:66724782-66724801 Msa1118140:three_prime_UTR 15.0%
!! TATTGTATTCATTACTATAT+AGG - chr7_3:66724957-66724976 None:intergenic 15.0%
!! CACTCAAAAACAAAATAAAA+TGG + chr7_3:66723670-66723689 Msa1118140:intron 20.0%
!! TCAAAAACAAAATAAAATGG+AGG + chr7_3:66723673-66723692 Msa1118140:intron 20.0%
!! AGGAAAAAAAATTTAAACCT+TGG + chr7_3:66723693-66723712 Msa1118140:intron 20.0%
!! CAAGGATACAAAATTTAATT+AGG - chr7_3:66723770-66723789 None:intergenic 20.0%
!! ATCAAAGGAAATTATCAATA+TGG + chr7_3:66724205-66724224 Msa1118140:CDS 20.0%
!! TGGAAATTATTCAAATGATA+TGG + chr7_3:66724701-66724720 Msa1118140:three_prime_UTR 20.0%
!! CACTCAAAAACAAAATAAAA+TGG + chr7_3:66723670-66723689 Msa1118140:intron 20.0%
!! TCAAAAACAAAATAAAATGG+AGG + chr7_3:66723673-66723692 Msa1118140:intron 20.0%
!! AGGAAAAAAAATTTAAACCT+TGG + chr7_3:66723693-66723712 Msa1118140:intron 20.0%
!! CAAGGATACAAAATTTAATT+AGG - chr7_3:66723770-66723789 None:intergenic 20.0%
!! ATCAAAGGAAATTATCAATA+TGG + chr7_3:66724205-66724224 Msa1118140:CDS 20.0%
!! TGGAAATTATTCAAATGATA+TGG + chr7_3:66724701-66724720 Msa1118140:three_prime_UTR 20.0%
!! ATTTTATCATTATCATGCCA+AGG - chr7_3:66723713-66723732 None:intergenic 25.0%
!!! AATTAAATTTGTTGAGCAGA+TGG + chr7_3:66723879-66723898 Msa1118140:intron 25.0%
!!! ATTAAATTTGTTGAGCAGAT+GGG + chr7_3:66723880-66723899 Msa1118140:intron 25.0%
! ATATCATTATCTGTTCTTTG+AGG - chr7_3:66723926-66723945 None:intergenic 25.0%
!!! TTTCCTTTGATTTGTGAATT+TGG - chr7_3:66724196-66724215 None:intergenic 25.0%
!!! TAATTTTGTGATGATGATGA+TGG - chr7_3:66724348-66724367 None:intergenic 25.0%
! ATCTTGTAATAATTCACCTT+TGG - chr7_3:66724374-66724393 None:intergenic 25.0%
! AAAGGTGAATTATTACAAGA+TGG + chr7_3:66724373-66724392 Msa1118140:CDS 25.0%
! TCATTTGAGAATCTTAACAA+TGG + chr7_3:66724433-66724452 Msa1118140:CDS 25.0%
! ATTTCTTGAGAAATGGTTAT+TGG + chr7_3:66724573-66724592 Msa1118140:CDS 25.0%
! ATCAAATAAACCCTTAAGTT+TGG + chr7_3:66724671-66724690 Msa1118140:three_prime_UTR 25.0%
! TCAAATAAACCCTTAAGTTT+GGG + chr7_3:66724672-66724691 Msa1118140:three_prime_UTR 25.0%
! AATTCTCTGATTATAAGACT+AGG + chr7_3:66724760-66724779 Msa1118140:three_prime_UTR 25.0%
! ATTCTCTGATTATAAGACTA+GGG + chr7_3:66724761-66724780 Msa1118140:three_prime_UTR 25.0%
!!! TTTTTATATTACATGGGTTG+AGG + chr7_3:66724789-66724808 Msa1118140:three_prime_UTR 25.0%
!! ACATTTGTAGTTTTTCTACA+AGG - chr7_3:66724924-66724943 None:intergenic 25.0%
!! ATTTTATCATTATCATGCCA+AGG - chr7_3:66723713-66723732 None:intergenic 25.0%
!!! AATTAAATTTGTTGAGCAGA+TGG + chr7_3:66723879-66723898 Msa1118140:intron 25.0%
!!! ATTAAATTTGTTGAGCAGAT+GGG + chr7_3:66723880-66723899 Msa1118140:intron 25.0%
! ATATCATTATCTGTTCTTTG+AGG - chr7_3:66723926-66723945 None:intergenic 25.0%
!!! TTTCCTTTGATTTGTGAATT+TGG - chr7_3:66724196-66724215 None:intergenic 25.0%
!!! TAATTTTGTGATGATGATGA+TGG - chr7_3:66724348-66724367 None:intergenic 25.0%
! ATCTTGTAATAATTCACCTT+TGG - chr7_3:66724374-66724393 None:intergenic 25.0%
! AAAGGTGAATTATTACAAGA+TGG + chr7_3:66724373-66724392 Msa1118140:CDS 25.0%
! TCATTTGAGAATCTTAACAA+TGG + chr7_3:66724433-66724452 Msa1118140:CDS 25.0%
! ATTTCTTGAGAAATGGTTAT+TGG + chr7_3:66724573-66724592 Msa1118140:CDS 25.0%
! ATCAAATAAACCCTTAAGTT+TGG + chr7_3:66724671-66724690 Msa1118140:three_prime_UTR 25.0%
! TCAAATAAACCCTTAAGTTT+GGG + chr7_3:66724672-66724691 Msa1118140:three_prime_UTR 25.0%
! AATTCTCTGATTATAAGACT+AGG + chr7_3:66724760-66724779 Msa1118140:three_prime_UTR 25.0%
! ATTCTCTGATTATAAGACTA+GGG + chr7_3:66724761-66724780 Msa1118140:three_prime_UTR 25.0%
!!! TTTTTATATTACATGGGTTG+AGG + chr7_3:66724789-66724808 Msa1118140:three_prime_UTR 25.0%
!! ACATTTGTAGTTTTTCTACA+AGG - chr7_3:66724924-66724943 None:intergenic 25.0%
TTAGATGGACAAATTATCTG+AGG + chr7_3:66723536-66723555 Msa1118140:five_prime_UTR 30.0%
ATAATCATTCCTTCTTCATG+AGG - chr7_3:66723589-66723608 None:intergenic 30.0%
TCACCAAATTCACAAATCAA+AGG + chr7_3:66724190-66724209 Msa1118140:CDS 30.0%
ATTTCAAGGTTTAAATCAGC+TGG - chr7_3:66724325-66724344 None:intergenic 30.0%
CATTTCTCAAGAAATGACAA+AGG - chr7_3:66724568-66724587 None:intergenic 30.0%
! CTTTGTCATTTCTTGAGAAA+TGG + chr7_3:66724566-66724585 Msa1118140:CDS 30.0%
TGGTTATTGGATGAAAATGT+TGG + chr7_3:66724586-66724605 Msa1118140:CDS 30.0%
ATAAGCTTAATTAGTGCATG+TGG + chr7_3:66724888-66724907 Msa1118140:three_prime_UTR 30.0%
TTAGATGGACAAATTATCTG+AGG + chr7_3:66723536-66723555 Msa1118140:five_prime_UTR 30.0%
ATAATCATTCCTTCTTCATG+AGG - chr7_3:66723589-66723608 None:intergenic 30.0%
TCACCAAATTCACAAATCAA+AGG + chr7_3:66724190-66724209 Msa1118140:CDS 30.0%
ATTTCAAGGTTTAAATCAGC+TGG - chr7_3:66724325-66724344 None:intergenic 30.0%
CATTTCTCAAGAAATGACAA+AGG - chr7_3:66724568-66724587 None:intergenic 30.0%
! CTTTGTCATTTCTTGAGAAA+TGG + chr7_3:66724566-66724585 Msa1118140:CDS 30.0%
TGGTTATTGGATGAAAATGT+TGG + chr7_3:66724586-66724605 Msa1118140:CDS 30.0%
ATAAGCTTAATTAGTGCATG+TGG + chr7_3:66724888-66724907 Msa1118140:three_prime_UTR 30.0%
ATTCATTTGCAAGCTCTTCT+TGG + chr7_3:66723607-66723626 Msa1118140:CDS 35.0%
TTGAGGAAGATATGAAGCTA+TGG - chr7_3:66723909-66723928 None:intergenic 35.0%
GTTGATGTTGTTGAGTTTGA+TGG - chr7_3:66724010-66724029 None:intergenic 35.0%
ACTTCTGTCACTAAAACTCT+TGG - chr7_3:66724041-66724060 None:intergenic 35.0%
!! CAAGCACTGAGAATATTTCA+AGG + chr7_3:66724143-66724162 Msa1118140:CDS 35.0%
TGAGAATATTTCAAGGCTCT+TGG + chr7_3:66724150-66724169 Msa1118140:CDS 35.0%
AATATTTCAAGGCTCTTGGA+AGG + chr7_3:66724154-66724173 Msa1118140:CDS 35.0%
!! GATGATGATGATGGATTTCA+AGG - chr7_3:66724339-66724358 None:intergenic 35.0%
CATCACAAAATTAGCACCAA+AGG + chr7_3:66724355-66724374 Msa1118140:CDS 35.0%
GGTGAATTATTACAAGATGG+TGG + chr7_3:66724376-66724395 Msa1118140:CDS 35.0%
TGATTCTATGCCTCATGAAA+AGG + chr7_3:66724480-66724499 Msa1118140:CDS 35.0%
GATTCTATGCCTCATGAAAA+GGG + chr7_3:66724481-66724500 Msa1118140:CDS 35.0%
TTCTCAAGAAATGACAAAGG+AGG - chr7_3:66724565-66724584 None:intergenic 35.0%
TCTCTTGCAAGTTAGAACAT+TGG - chr7_3:66724640-66724659 None:intergenic 35.0%
GTTGAGGAATCTTAGAAGTT+AGG + chr7_3:66724805-66724824 Msa1118140:three_prime_UTR 35.0%
ATTCATTTGCAAGCTCTTCT+TGG + chr7_3:66723607-66723626 Msa1118140:CDS 35.0%
TTGAGGAAGATATGAAGCTA+TGG - chr7_3:66723909-66723928 None:intergenic 35.0%
GTTGATGTTGTTGAGTTTGA+TGG - chr7_3:66724010-66724029 None:intergenic 35.0%
ACTTCTGTCACTAAAACTCT+TGG - chr7_3:66724041-66724060 None:intergenic 35.0%
!! CAAGCACTGAGAATATTTCA+AGG + chr7_3:66724143-66724162 Msa1118140:CDS 35.0%
TGAGAATATTTCAAGGCTCT+TGG + chr7_3:66724150-66724169 Msa1118140:CDS 35.0%
AATATTTCAAGGCTCTTGGA+AGG + chr7_3:66724154-66724173 Msa1118140:CDS 35.0%
!! GATGATGATGATGGATTTCA+AGG - chr7_3:66724339-66724358 None:intergenic 35.0%
CATCACAAAATTAGCACCAA+AGG + chr7_3:66724355-66724374 Msa1118140:CDS 35.0%
GGTGAATTATTACAAGATGG+TGG + chr7_3:66724376-66724395 Msa1118140:CDS 35.0%
TGATTCTATGCCTCATGAAA+AGG + chr7_3:66724480-66724499 Msa1118140:CDS 35.0%
GATTCTATGCCTCATGAAAA+GGG + chr7_3:66724481-66724500 Msa1118140:CDS 35.0%
TTCTCAAGAAATGACAAAGG+AGG - chr7_3:66724565-66724584 None:intergenic 35.0%
TCTCTTGCAAGTTAGAACAT+TGG - chr7_3:66724640-66724659 None:intergenic 35.0%
GTTGAGGAATCTTAGAAGTT+AGG + chr7_3:66724805-66724824 Msa1118140:three_prime_UTR 35.0%
AAGTTTCCTCTCTTGATTCC+TGG - chr7_3:66723562-66723581 None:intergenic 40.0%
AACTTCACTCCTCATGAAGA+AGG + chr7_3:66723577-66723596 Msa1118140:five_prime_UTR 40.0%
ATTCTCAGTGCTTGAAGCAT+AGG - chr7_3:66724137-66724156 None:intergenic 40.0%
!! ATCTTAACAATGGTGCTGCT+TGG + chr7_3:66724443-66724462 Msa1118140:CDS 40.0%
!! TCTTAACAATGGTGCTGCTT+GGG + chr7_3:66724444-66724463 Msa1118140:CDS 40.0%
TCAAGAAATGACAAAGGAGG+AGG - chr7_3:66724562-66724581 None:intergenic 40.0%
GGATGAAAATGTTGGTCATG+TGG + chr7_3:66724594-66724613 Msa1118140:CDS 40.0%
TGAAAATGTTGGTCATGTGG+AGG + chr7_3:66724597-66724616 Msa1118140:CDS 40.0%
CCATGACATCCCAAACTTAA+GGG - chr7_3:66724684-66724703 None:intergenic 40.0%
TCCATGACATCCCAAACTTA+AGG - chr7_3:66724685-66724704 None:intergenic 40.0%
AAGTTTCCTCTCTTGATTCC+TGG - chr7_3:66723562-66723581 None:intergenic 40.0%
AACTTCACTCCTCATGAAGA+AGG + chr7_3:66723577-66723596 Msa1118140:five_prime_UTR 40.0%
ATTCTCAGTGCTTGAAGCAT+AGG - chr7_3:66724137-66724156 None:intergenic 40.0%
!! ATCTTAACAATGGTGCTGCT+TGG + chr7_3:66724443-66724462 Msa1118140:CDS 40.0%
!! TCTTAACAATGGTGCTGCTT+GGG + chr7_3:66724444-66724463 Msa1118140:CDS 40.0%
TCAAGAAATGACAAAGGAGG+AGG - chr7_3:66724562-66724581 None:intergenic 40.0%
GGATGAAAATGTTGGTCATG+TGG + chr7_3:66724594-66724613 Msa1118140:CDS 40.0%
TGAAAATGTTGGTCATGTGG+AGG + chr7_3:66724597-66724616 Msa1118140:CDS 40.0%
CCATGACATCCCAAACTTAA+GGG - chr7_3:66724684-66724703 None:intergenic 40.0%
TCCATGACATCCCAAACTTA+AGG - chr7_3:66724685-66724704 None:intergenic 40.0%
CAAGATGCAGCAAAAGTTGC+AGG + chr7_3:66723512-66723531 Msa1118140:five_prime_UTR 45.0%
GCAAAAGTTGCAGGCTTAGA+TGG + chr7_3:66723521-66723540 Msa1118140:five_prime_UTR 45.0%
! TGGACAAATTATCTGAGGCC+AGG + chr7_3:66723541-66723560 Msa1118140:five_prime_UTR 45.0%
TTTCAAGGCTCTTGGAAGGT+TGG + chr7_3:66724158-66724177 Msa1118140:CDS 45.0%
! GAAGCTGAACCCTTTTCATG+AGG - chr7_3:66724493-66724512 None:intergenic 45.0%
TGGTCATGTGGAGGAAATGA+TGG + chr7_3:66724606-66724625 Msa1118140:CDS 45.0%
! CCCTTAAGTTTGGGATGTCA+TGG + chr7_3:66724681-66724700 Msa1118140:three_prime_UTR 45.0%
CAAGATGCAGCAAAAGTTGC+AGG + chr7_3:66723512-66723531 Msa1118140:five_prime_UTR 45.0%
GCAAAAGTTGCAGGCTTAGA+TGG + chr7_3:66723521-66723540 Msa1118140:five_prime_UTR 45.0%
! TGGACAAATTATCTGAGGCC+AGG + chr7_3:66723541-66723560 Msa1118140:five_prime_UTR 45.0%
TTTCAAGGCTCTTGGAAGGT+TGG + chr7_3:66724158-66724177 Msa1118140:CDS 45.0%
! GAAGCTGAACCCTTTTCATG+AGG - chr7_3:66724493-66724512 None:intergenic 45.0%
TGGTCATGTGGAGGAAATGA+TGG + chr7_3:66724606-66724625 Msa1118140:CDS 45.0%
! CCCTTAAGTTTGGGATGTCA+TGG + chr7_3:66724681-66724700 Msa1118140:three_prime_UTR 45.0%
CTGAGGCCAGGAATCAAGAG+AGG + chr7_3:66723553-66723572 Msa1118140:five_prime_UTR 55.0%
CTGAGGCCAGGAATCAAGAG+AGG + chr7_3:66723553-66723572 Msa1118140:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 66723498 66725006 66723498 ID=Msa1118140;Name=Msa1118140
chr7_3 mRNA 66723498 66725006 66723498 ID=Msa1118140-mRNA-1;Parent=Msa1118140;Name=Msa1118140-mRNA-1;_AED=0.00;_eAED=0.00;_QI=103|1|1|1|1|1|2|358|261
chr7_3 exon 66723498 66723635 66723498 ID=Msa1118140-mRNA-1:exon:16222;Parent=Msa1118140-mRNA-1
chr7_3 exon 66723898 66725006 66723898 ID=Msa1118140-mRNA-1:exon:16223;Parent=Msa1118140-mRNA-1
chr7_3 five_prime_UTR 66723498 66723600 66723498 ID=Msa1118140-mRNA-1:five_prime_utr;Parent=Msa1118140-mRNA-1
chr7_3 CDS 66723601 66723635 66723601 ID=Msa1118140-mRNA-1:cds;Parent=Msa1118140-mRNA-1
chr7_3 CDS 66723898 66724648 66723898 ID=Msa1118140-mRNA-1:cds;Parent=Msa1118140-mRNA-1
chr7_3 three_prime_UTR 66724649 66725006 66724649 ID=Msa1118140-mRNA-1:three_prime_utr;Parent=Msa1118140-mRNA-1
Gene Sequence

>Msa1118140

ATGATTATTCATTTGCAAGCTCTTCTTGGTAACAAATGGGCAGCCATAGCTTCATATCTTCCTCAAAGAACAGATAATGATATAAAGAATTATTGGAACACACATCTTAAGAAAAAGCTCAACAAATTTCATGCAACTTTAGATCCATCAAACTCAACAACATCAACTTATCTATCCAAGAGTTTTAGTGACAGAAGTTTAGATGTTAGCAACAATCATACTTCATCTCTTAAGATTAATACTCAAAATTCTCATCAATCTTCTTCTTCAACCTATGCTTCAAGCACTGAGAATATTTCAAGGCTCTTGGAAGGTTGGATGAGATCTTCACCAAATTCACAAATCAAAGGAAATTATCAATATGGTCATCAAGAGTTTCAAAGCATTAATGATGATATTATTGATGATAATAATGAGTTTGAAAATAATGGGAAATTGTTAGTGAAGTCTGCTTCAGTTCCAGCTGATTTAAACCTTGAAATCCATCATCATCATCACAAAATTAGCACCAAAGGTGAATTATTACAAGATGGTGGAGTTTCACATGATCAAGAGTTTGATTCTATTCTTTCATTTGAGAATCTTAACAATGGTGCTGCTTGGGACAAGTCAACTTGTGATTCTATGCCTCATGAAAAGGGTTCAGCTTCTTCTTCTTCTTCTCATCACAAGAATATTAAGAATTTATGTGCAGCTCCTCCTCCTTTGTCATTTCTTGAGAAATGGTTATTGGATGAAAATGTTGGTCATGTGGAGGAAATGATGGAATTATCTCCAATGTTCTAA
Protein sequence

>Msa1118140

MIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLNKFHATLDPSNSTTSTYLSKSFSDRSLDVSNNHTSSLKINTQNSHQSSSSTYASSTENISRLLEGWMRSSPNSQIKGNYQYGHQEFQSINDDIIDDNNEFENNGKLLVKSASVPADLNLEIHHHHHKISTKGELLQDGGVSHDQEFDSILSFENLNNGAAWDKSTCDSMPHEKGSASSSSSHHKNIKNLCAAPPPLSFLEKWLLDENVGHVEEMMELSPMF*