Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0328380 | XP_003595919.1 | 96.633 | 594 | 10 | 1 | 1 | 594 | 1 | 584 | 0.0 | 1182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0328380 | sp|Q9LJE5|ECT2_ARATH | 51.203 | 291 | 115 | 6 | 287 | 557 | 338 | 621 | 1.22e-88 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0328380 | G7IT77 | 96.633 | 594 | 10 | 1 | 1 | 594 | 1 | 584 | 0.0 | 1182 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038020 | Msa0328380 | 0.811826 | 5.765436e-51 | -8.615850e-47 |
| Msa0085720 | Msa0328380 | 0.810981 | 8.795987e-51 | -8.615850e-47 |
| Msa0132240 | Msa0328380 | 0.814811 | 1.273869e-51 | -8.615850e-47 |
| Msa0204780 | Msa0328380 | 0.864237 | 1.405100e-64 | -8.615850e-47 |
| Msa0260790 | Msa0328380 | 0.805226 | 1.478461e-49 | -8.615850e-47 |
| Msa0312310 | Msa0328380 | 0.809306 | 2.020037e-50 | -8.615850e-47 |
| Msa0328380 | Msa0362060 | 0.801293 | 9.641316e-49 | -8.615850e-47 |
| Msa0328380 | Msa0363100 | 0.817363 | 3.427627e-52 | -8.615850e-47 |
| Msa0328380 | Msa0363170 | 0.817855 | 2.655684e-52 | -8.615850e-47 |
| Msa0328380 | Msa0370870 | 0.841481 | 4.629519e-58 | -8.615850e-47 |
| Msa0328380 | Msa0381220 | 0.833525 | 5.073053e-56 | -8.615850e-47 |
| Msa0328380 | Msa0404700 | 0.814786 | 1.290073e-51 | -8.615850e-47 |
| Msa0328380 | Msa0419050 | 0.812118 | 4.980234e-51 | -8.615850e-47 |
| Msa0328380 | Msa0431020 | 0.857149 | 1.987411e-62 | -8.615850e-47 |
| Msa0328380 | Msa0475050 | 0.801399 | 9.172188e-49 | -8.615850e-47 |
| Msa0328380 | Msa0510560 | 0.829053 | 6.384184e-55 | -8.615850e-47 |
| Msa0328380 | Msa0527980 | -0.812346 | 4.440398e-51 | -8.615850e-47 |
| Msa0328380 | Msa0598560 | 0.829538 | 4.868734e-55 | -8.615850e-47 |
| Msa0328380 | Msa0866800 | 0.830085 | 3.581818e-55 | -8.615850e-47 |
| Msa0328380 | Msa0930820 | 0.800633 | 1.315163e-48 | -8.615850e-47 |
| Msa0328380 | Msa0944730 | 0.812551 | 4.004650e-51 | -8.615850e-47 |
| Msa0328380 | Msa0962210 | 0.805298 | 1.428153e-49 | -8.615850e-47 |
| Msa0328380 | Msa0982590 | 0.858822 | 6.325021e-63 | -8.615850e-47 |
| Msa0328380 | Msa1084160 | -0.835567 | 1.556971e-56 | -8.615850e-47 |
| Msa0328380 | Msa1143790 | 0.804855 | 1.768171e-49 | -8.615850e-47 |
| Msa0328380 | Msa1222280 | 0.813649 | 2.299590e-51 | -8.615850e-47 |
| Msa0328380 | Msa1235020 | 0.807619 | 4.626255e-50 | -8.615850e-47 |
| Msa0328380 | Msa1368180 | 0.816026 | 6.836160e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0328380 | MtrunA17_Chr2g0309651 | 96.633 | 594 | 10 | 1 | 1 | 594 | 1 | 584 | 0.0 | 1182 |
| Msa0328380 | MtrunA17_Chr2g0293641 | 42.115 | 520 | 227 | 18 | 70 | 544 | 46 | 536 | 4.09e-104 | 329 |
| Msa0328380 | MtrunA17_Chr4g0069011 | 42.664 | 518 | 234 | 13 | 70 | 547 | 11 | 505 | 1.94e-103 | 326 |
| Msa0328380 | MtrunA17_Chr4g0000071 | 64.783 | 230 | 75 | 2 | 318 | 545 | 337 | 562 | 8.10e-96 | 306 |
| Msa0328380 | MtrunA17_Chr2g0277111 | 62.842 | 183 | 68 | 0 | 360 | 542 | 268 | 450 | 2.03e-82 | 267 |
| Msa0328380 | MtrunA17_Chr7g0253191 | 57.820 | 211 | 79 | 2 | 357 | 567 | 414 | 614 | 6.93e-80 | 265 |
| Msa0328380 | MtrunA17_Chr6g0461531 | 52.033 | 246 | 88 | 5 | 322 | 547 | 349 | 584 | 2.54e-77 | 258 |
| Msa0328380 | MtrunA17_Chr8g0380431 | 49.606 | 254 | 96 | 8 | 276 | 503 | 299 | 546 | 1.34e-66 | 226 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0328380 | AT1G79270.2 | 44.877 | 488 | 207 | 11 | 91 | 568 | 63 | 498 | 7.02e-123 | 372 |
| Msa0328380 | AT1G79270.4 | 44.877 | 488 | 207 | 11 | 91 | 568 | 63 | 498 | 7.02e-123 | 372 |
| Msa0328380 | AT1G79270.3 | 44.877 | 488 | 207 | 11 | 91 | 568 | 63 | 498 | 7.02e-123 | 372 |
| Msa0328380 | AT1G79270.1 | 44.877 | 488 | 207 | 11 | 91 | 568 | 78 | 513 | 8.15e-123 | 373 |
| Msa0328380 | AT1G48110.2 | 39.412 | 510 | 246 | 13 | 71 | 546 | 13 | 493 | 1.50e-98 | 313 |
| Msa0328380 | AT1G48110.1 | 39.412 | 510 | 246 | 13 | 71 | 546 | 13 | 493 | 1.50e-98 | 313 |
| Msa0328380 | AT3G13060.3 | 54.007 | 287 | 107 | 7 | 306 | 573 | 294 | 574 | 1.59e-92 | 297 |
| Msa0328380 | AT3G13060.6 | 54.007 | 287 | 107 | 7 | 306 | 573 | 294 | 574 | 1.59e-92 | 297 |
| Msa0328380 | AT3G13060.2 | 57.031 | 256 | 88 | 4 | 306 | 545 | 316 | 565 | 2.09e-92 | 297 |
| Msa0328380 | AT3G13060.4 | 57.031 | 256 | 88 | 4 | 306 | 545 | 306 | 555 | 2.57e-92 | 297 |
| Msa0328380 | AT3G17330.1 | 40.807 | 446 | 213 | 13 | 116 | 547 | 35 | 443 | 7.39e-90 | 290 |
| Msa0328380 | AT3G17330.3 | 40.807 | 446 | 213 | 13 | 116 | 547 | 35 | 443 | 7.39e-90 | 290 |
| Msa0328380 | AT3G17330.2 | 57.965 | 226 | 92 | 1 | 325 | 547 | 116 | 341 | 9.13e-90 | 286 |
| Msa0328380 | AT3G13460.1 | 51.203 | 291 | 115 | 6 | 287 | 557 | 338 | 621 | 1.24e-89 | 291 |
| Msa0328380 | AT3G13460.4 | 51.203 | 291 | 115 | 6 | 287 | 557 | 337 | 620 | 1.30e-89 | 291 |
| Msa0328380 | AT3G13460.2 | 51.203 | 291 | 115 | 6 | 287 | 557 | 335 | 618 | 1.31e-89 | 291 |
| Msa0328380 | AT1G09810.1 | 57.391 | 230 | 97 | 1 | 317 | 546 | 175 | 403 | 1.74e-85 | 274 |
| Msa0328380 | AT1G09810.3 | 51.799 | 278 | 126 | 4 | 273 | 546 | 111 | 384 | 1.75e-85 | 274 |
| Msa0328380 | AT1G09810.2 | 51.799 | 278 | 126 | 4 | 273 | 546 | 88 | 361 | 2.26e-85 | 273 |
| Msa0328380 | AT1G55500.1 | 53.307 | 257 | 97 | 4 | 303 | 540 | 268 | 520 | 6.24e-85 | 275 |
| Msa0328380 | AT1G55500.3 | 53.307 | 257 | 97 | 4 | 303 | 540 | 311 | 563 | 7.87e-85 | 276 |
| Msa0328380 | AT5G61020.2 | 55.274 | 237 | 86 | 4 | 322 | 545 | 197 | 426 | 3.10e-84 | 272 |
| Msa0328380 | AT5G61020.1 | 55.274 | 237 | 86 | 4 | 322 | 545 | 199 | 428 | 3.45e-84 | 272 |
| Msa0328380 | AT3G03950.1 | 55.357 | 224 | 96 | 1 | 322 | 545 | 190 | 409 | 3.35e-81 | 262 |
| Msa0328380 | AT3G03950.2 | 55.357 | 224 | 96 | 1 | 322 | 545 | 189 | 408 | 3.54e-81 | 261 |
| Msa0328380 | AT3G03950.3 | 55.357 | 224 | 96 | 1 | 322 | 545 | 193 | 412 | 3.57e-81 | 262 |
| Msa0328380 | AT1G27960.3 | 56.250 | 224 | 83 | 3 | 322 | 545 | 215 | 423 | 7.49e-79 | 257 |
| Msa0328380 | AT1G27960.1 | 56.250 | 224 | 83 | 3 | 322 | 545 | 289 | 497 | 6.61e-78 | 256 |
| Msa0328380 | AT5G58190.2 | 51.429 | 245 | 109 | 5 | 328 | 567 | 275 | 514 | 1.38e-76 | 253 |
| Msa0328380 | AT5G58190.1 | 51.429 | 245 | 109 | 5 | 328 | 567 | 274 | 513 | 1.42e-76 | 253 |
| Msa0328380 | AT1G55500.6 | 36.542 | 509 | 253 | 15 | 87 | 540 | 40 | 533 | 1.39e-75 | 251 |
| Msa0328380 | AT1G55500.2 | 36.542 | 509 | 253 | 15 | 87 | 540 | 83 | 576 | 1.51e-75 | 252 |
| Msa0328380 | AT1G55500.5 | 36.542 | 509 | 253 | 15 | 87 | 540 | 83 | 576 | 2.49e-75 | 251 |
| Msa0328380 | AT3G13060.1 | 56.075 | 214 | 72 | 4 | 306 | 503 | 316 | 523 | 2.33e-71 | 239 |
| Msa0328380 | AT3G13460.3 | 45.783 | 166 | 63 | 6 | 287 | 432 | 338 | 496 | 5.67e-29 | 121 |
| Msa0328380 | AT3G13060.5 | 43.357 | 143 | 59 | 4 | 306 | 432 | 316 | 452 | 4.31e-25 | 108 |
| Msa0328380 | AT1G27960.2 | 48.214 | 112 | 43 | 3 | 322 | 433 | 289 | 385 | 9.34e-20 | 92.8 |
| Msa0328380 | AT4G11970.2 | 30.357 | 168 | 82 | 5 | 355 | 503 | 44 | 195 | 2.20e-13 | 72.4 |
| Msa0328380 | AT4G11970.5 | 30.357 | 168 | 82 | 5 | 355 | 503 | 44 | 195 | 2.26e-13 | 72.4 |
| Msa0328380 | AT4G11970.3 | 30.357 | 168 | 82 | 5 | 355 | 503 | 44 | 195 | 2.28e-13 | 72.4 |
| Msa0328380 | AT4G11970.1 | 30.357 | 168 | 82 | 5 | 355 | 503 | 44 | 195 | 4.97e-13 | 72.0 |
| Msa0328380 | AT4G11970.4 | 30.357 | 168 | 82 | 5 | 355 | 503 | 44 | 195 | 4.97e-13 | 72.0 |
Find 142 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACTTGTTGCTTTCATATT+AGG | 0.139929 | 2_4:-40776017 | None:intergenic |
| TATTCTGCTGGTAGTTATTA+TGG | 0.145347 | 2_4:+40774256 | Msa0328380:CDS |
| TCAACAAAAGTATGGATTTC+TGG | 0.157531 | 2_4:+40776597 | Msa0328380:CDS |
| GAAAAGTGCATGATCATATT+TGG | 0.231336 | 2_4:-40776231 | None:intergenic |
| TTAAACTCTGGAGGTAATTC+TGG | 0.231621 | 2_4:+40776143 | Msa0328380:CDS |
| GTTACCTTGTTTGCTTGTTT+TGG | 0.232110 | 2_4:-40775645 | None:intergenic |
| GAGGCTCGACAATGCATTTC+AGG | 0.241866 | 2_4:+40776337 | Msa0328380:CDS |
| GATTATAAGTGCTTCTTCTA+TGG | 0.253854 | 2_4:+40773709 | Msa0328380:exon |
| CCTGGCTATATTTCACCTTA+TGG | 0.275162 | 2_4:+40775378 | Msa0328380:CDS |
| GTGTCTCTACTATTTGTTAC+AGG | 0.280235 | 2_4:-40776725 | None:intergenic |
| ATGTTGATCTGTCCTGATTT+TGG | 0.281400 | 2_4:-40776189 | None:intergenic |
| GGTTGTATTATAAGAGCTTT+TGG | 0.307205 | 2_4:+40773687 | Msa0328380:five_prime_UTR |
| AGTGGATTTCAACAAAAGTA+TGG | 0.322061 | 2_4:+40776589 | Msa0328380:CDS |
| TCATATTTGGTTGGAAAATC+AGG | 0.322709 | 2_4:-40776218 | None:intergenic |
| CGATCTACCACTCGGTTTAC+TGG | 0.323936 | 2_4:-40775484 | None:intergenic |
| TGAATAGAATGTCTATATAA+AGG | 0.324868 | 2_4:-40773317 | None:intergenic |
| TGTATCGAGAACATCGATAT+TGG | 0.347303 | 2_4:+40776912 | Msa0328380:CDS |
| ATTTCTGGCAGCAAGATAAA+TGG | 0.351407 | 2_4:+40776612 | Msa0328380:CDS |
| ATATGCCGTAGCTGAGGATT+TGG | 0.367053 | 2_4:-40776677 | None:intergenic |
| AGGGAATCGTTATAATGAAT+TGG | 0.374688 | 2_4:+40775461 | Msa0328380:CDS |
| CAGTATCAGGTTTACCCTCC+TGG | 0.392158 | 2_4:+40775327 | Msa0328380:CDS |
| TTTATAATGTGCCATTTGAC+AGG | 0.415396 | 2_4:-40776647 | None:intergenic |
| TCCGTCTTTCAACAACCAAT+TGG | 0.421822 | 2_4:+40775351 | Msa0328380:CDS |
| CTCTTGCATGACCTTCTGAC+GGG | 0.425352 | 2_4:-40776956 | None:intergenic |
| ATGTTCTTTACAACCAACTT+AGG | 0.426914 | 2_4:-40777723 | None:intergenic |
| TGGTGTCGATGTCCAGTATC+AGG | 0.429764 | 2_4:+40775314 | Msa0328380:CDS |
| TAGGTCATGCAAGCAGATAA+TGG | 0.430474 | 2_4:+40775225 | Msa0328380:intron |
| TCGAGCCTCTTATTGCCATT+AGG | 0.430781 | 2_4:-40776323 | None:intergenic |
| GCGACGGGAAAAGAACCCTT+TGG | 0.439928 | 2_4:-40775939 | None:intergenic |
| AGATCATGTGTATCATCAAT+AGG | 0.445206 | 2_4:+40774163 | Msa0328380:CDS |
| TTCACTTTCTCAACCAACTT+AGG | 0.446586 | 2_4:-40777753 | None:intergenic |
| ATGGAGAACAGGACCAGAAA+TGG | 0.448479 | 2_4:-40775904 | None:intergenic |
| AGAGCATCAAGTACGATGTA+TGG | 0.449332 | 2_4:+40776291 | Msa0328380:CDS |
| CAGGAGGGTAAACCTGATAC+TGG | 0.449509 | 2_4:-40775326 | None:intergenic |
| TGTGGAGTAGCCGAGATGAT+TGG | 0.450864 | 2_4:+40776563 | Msa0328380:CDS |
| TTTGGGTTTCTTGCATGTAG+TGG | 0.453515 | 2_4:+40773637 | Msa0328380:five_prime_UTR |
| TATTATGGATATTACTATCC+AGG | 0.456293 | 2_4:+40774271 | Msa0328380:CDS |
| GTTGAAGAAACATCTAATAT+TGG | 0.457075 | 2_4:-40775603 | None:intergenic |
| GATAATCTTATTATGTTGGT+TGG | 0.457530 | 2_4:-40773357 | None:intergenic |
| TCATCAATAGGAGATGCTTC+TGG | 0.457910 | 2_4:+40774175 | Msa0328380:CDS |
| CAGAATGTTGCTTATTCTGC+TGG | 0.462148 | 2_4:+40774244 | Msa0328380:CDS |
| TATGTTAAGGTTTCTTCAAA+GGG | 0.467717 | 2_4:+40774115 | Msa0328380:intron |
| TCAATGGTGACACCAAAATC+AGG | 0.467791 | 2_4:+40776177 | Msa0328380:CDS |
| TTATGTCGGCGCTGATGCTA+TGG | 0.468389 | 2_4:+40774597 | Msa0328380:CDS |
| TCTCTTGCATGACCTTCTGA+CGG | 0.475313 | 2_4:-40776957 | None:intergenic |
| CAACAACCAATTGGATCCCC+TGG | 0.475726 | 2_4:+40775360 | Msa0328380:CDS |
| ATTGCATCTGAATGGAGAAC+AGG | 0.476903 | 2_4:-40775915 | None:intergenic |
| CAACATTCTGATCAGTGGAT+TGG | 0.479321 | 2_4:-40774231 | None:intergenic |
| TACCGAAAAGAAAAGGAATA+CGG | 0.480275 | 2_4:-40776399 | None:intergenic |
| CCATAAGGTGAAATATAGCC+AGG | 0.480961 | 2_4:-40775378 | None:intergenic |
| GAGTAGCCAGTCTGATATCC+TGG | 0.482425 | 2_4:-40775267 | None:intergenic |
| CCTAGAACAGTTAATGCAAA+AGG | 0.482609 | 2_4:+40776116 | Msa0328380:CDS |
| GAATCCCATGAGTATGTTGA+TGG | 0.482741 | 2_4:-40775411 | None:intergenic |
| GGTTGTTGAAAGACGGAACC+AGG | 0.487017 | 2_4:-40775345 | None:intergenic |
| AATGGATAATCTTATTATGT+TGG | 0.487408 | 2_4:-40773361 | None:intergenic |
| CCTTTGGCATTGCATCTGAA+TGG | 0.488787 | 2_4:-40775923 | None:intergenic |
| AGAGAGAAAATGAAGAACAA+TGG | 0.492903 | 2_4:-40773254 | None:intergenic |
| TTATGTTAAGGTTTCTTCAA+AGG | 0.495686 | 2_4:+40774114 | Msa0328380:intron |
| TATGGAGAGCAAGAAAATCA+AGG | 0.500681 | 2_4:+40774571 | Msa0328380:CDS |
| ACGGATATTTCCCTGTCAAA+TGG | 0.501338 | 2_4:+40776636 | Msa0328380:CDS |
| TACTTTCCTGTGAACACACC+TGG | 0.502118 | 2_4:+40775294 | Msa0328380:CDS |
| GATAGCATACCGAAAAGAAA+AGG | 0.504322 | 2_4:-40776406 | None:intergenic |
| TATGTAGAAAACTTTGCGAC+GGG | 0.505982 | 2_4:-40775954 | None:intergenic |
| GCAAAAGGTACTTTAAACTC+TGG | 0.507406 | 2_4:+40776131 | Msa0328380:CDS |
| TCTGGAGATAAGAGTGTCAA+TGG | 0.513122 | 2_4:+40776161 | Msa0328380:CDS |
| TACTTCCATCAACATACTCA+TGG | 0.517546 | 2_4:+40775406 | Msa0328380:CDS |
| CACATGCAAGCTTACCATGT+TGG | 0.518787 | 2_4:-40773943 | None:intergenic |
| TCGCAGAGTCGTACTGGCAG+TGG | 0.526655 | 2_4:+40775516 | Msa0328380:CDS |
| AGTGCATGATCATATTTGGT+TGG | 0.527014 | 2_4:-40776227 | None:intergenic |
| ATATAGCCAGGGGATCCAAT+TGG | 0.527493 | 2_4:-40775366 | None:intergenic |
| CCCTTGTGCTACATCTTGTG+TGG | 0.528879 | 2_4:-40775442 | None:intergenic |
| GTACACCTAATGGCAATAAG+AGG | 0.531549 | 2_4:+40776318 | Msa0328380:CDS |
| TCTTATGTCTATCTCATGCC+AGG | 0.534138 | 2_4:+40775249 | Msa0328380:CDS |
| GATGGAAGTAACTCACCATA+AGG | 0.536031 | 2_4:-40775393 | None:intergenic |
| TCCAATTGGTTGTTGAAAGA+CGG | 0.536670 | 2_4:-40775352 | None:intergenic |
| GTATGGGCGAGTACACCTAA+TGG | 0.536841 | 2_4:+40776308 | Msa0328380:CDS |
| TCACTTAATGAGCAGAATCA+AGG | 0.540048 | 2_4:+40776092 | Msa0328380:CDS |
| GAACATGGAGGATCCTAAGT+TGG | 0.540134 | 2_4:+40777710 | Msa0328380:CDS |
| GAACATGGAGGATCCTAAGT+TGG | 0.540134 | 2_4:+40777740 | Msa0328380:CDS |
| TCGACACCAGGTGTGTTCAC+AGG | 0.547002 | 2_4:-40775300 | None:intergenic |
| CCAGCCAAAACAAGCAAACA+AGG | 0.547719 | 2_4:+40775641 | Msa0328380:CDS |
| CCATTCAGATGCAATGCCAA+AGG | 0.548568 | 2_4:+40775923 | Msa0328380:CDS |
| CATTCAGATGCAATGCCAAA+GGG | 0.552432 | 2_4:+40775924 | Msa0328380:CDS |
| CAGAATCGAATGGAAGAGAA+AGG | 0.555397 | 2_4:+40776365 | Msa0328380:CDS |
| CAAACCTGTACATTGGTATG+TGG | 0.555627 | 2_4:-40777000 | None:intergenic |
| AAGGTTTCTTCAAAGGGTGG+TGG | 0.558132 | 2_4:+40774121 | Msa0328380:intron |
| GAGCATCAAGTACGATGTAT+GGG | 0.559060 | 2_4:+40776292 | Msa0328380:CDS |
| TATGCCACATACCAATGTAC+AGG | 0.568570 | 2_4:+40776996 | Msa0328380:CDS |
| GAGCAACTCATCAGAAGTGA+AGG | 0.569571 | 2_4:+40775572 | Msa0328380:CDS |
| CATATCAGCTGTAAAGAACA+TGG | 0.571245 | 2_4:+40777695 | Msa0328380:CDS |
| CTCAGTACTAACCCATCCCT+TGG | 0.572036 | 2_4:-40776039 | None:intergenic |
| TTATAATGTGCCATTTGACA+GGG | 0.573430 | 2_4:-40776646 | None:intergenic |
| GAAGACTTAACAAGTGCACT+TGG | 0.574492 | 2_4:+40777663 | Msa0328380:CDS |
| AGCAACAAGTACCAAGGGAT+GGG | 0.576647 | 2_4:+40776028 | Msa0328380:CDS |
| CTCATGCCAGGATATCAGAC+TGG | 0.577228 | 2_4:+40775261 | Msa0328380:CDS |
| GAAGAAACATCTAATATTGG+TGG | 0.577898 | 2_4:-40775600 | None:intergenic |
| ACCGAAAAGAAAAGGAATAC+GGG | 0.578211 | 2_4:-40776398 | None:intergenic |
| GTTAAGGTTTCTTCAAAGGG+TGG | 0.579681 | 2_4:+40774118 | Msa0328380:intron |
| GTATGTAGAAAACTTTGCGA+CGG | 0.581650 | 2_4:-40775955 | None:intergenic |
| ACATACAATCAAGGAAAGAG+TGG | 0.582689 | 2_4:+40775972 | Msa0328380:CDS |
| GCTTGTGATCATTATTCTCG+AGG | 0.582868 | 2_4:-40776703 | None:intergenic |
| ATGAAAGCAACAAGTACCAA+GGG | 0.583635 | 2_4:+40776023 | Msa0328380:CDS |
| AGCCGAGATGATTGGACGAG+TGG | 0.583728 | 2_4:+40776571 | Msa0328380:CDS |
| ACTTCCATCAACATACTCAT+GGG | 0.589217 | 2_4:+40775407 | Msa0328380:CDS |
| ATCCACTCGTCCAATCATCT+CGG | 0.591466 | 2_4:-40776573 | None:intergenic |
| AAGCAACAAGTACCAAGGGA+TGG | 0.592367 | 2_4:+40776027 | Msa0328380:CDS |
| TGAGTTCAGGTCAACGCTAG+TGG | 0.593166 | 2_4:+40776533 | Msa0328380:intron |
| ATAAGCAACATTCTGATCAG+TGG | 0.595793 | 2_4:-40774236 | None:intergenic |
| ATATTCCAAATCCTCAGCTA+CGG | 0.598835 | 2_4:+40776672 | Msa0328380:CDS |
| GTAAAATCAAACCTGTACAT+TGG | 0.599665 | 2_4:-40777007 | None:intergenic |
| GAAAATCAAGGATATTATGT+CGG | 0.602073 | 2_4:+40774583 | Msa0328380:CDS |
| TGTACATTGGTATGTGGCAT+AGG | 0.603452 | 2_4:-40776994 | None:intergenic |
| TTGAGCATTTCAATACCTTG+CGG | 0.609987 | 2_4:-40776874 | None:intergenic |
| AGAATGATTACAGGTTATGG+TGG | 0.612198 | 2_4:+40774544 | Msa0328380:intron |
| AAAGGTACTTTAAACTCTGG+AGG | 0.617094 | 2_4:+40776134 | Msa0328380:CDS |
| TGAGTTGCTCACATTAGATG+AGG | 0.617233 | 2_4:-40775559 | None:intergenic |
| TGATACTGGACATCGACACC+AGG | 0.618053 | 2_4:-40775312 | None:intergenic |
| ATTTGGTTGGAAAATCAGGA+AGG | 0.619406 | 2_4:-40776214 | None:intergenic |
| CATAAGGTGAAATATAGCCA+GGG | 0.620198 | 2_4:-40775377 | None:intergenic |
| ACACATGATCTTGCATCAGA+TGG | 0.625382 | 2_4:-40774151 | None:intergenic |
| TAAGTTGGTTGTAAAGAACA+TGG | 0.629871 | 2_4:+40777725 | Msa0328380:CDS |
| TATGAAAGCAACAAGTACCA+AGG | 0.634095 | 2_4:+40776022 | Msa0328380:CDS |
| CATACAATCAAGGAAAGAGT+GGG | 0.635967 | 2_4:+40775973 | Msa0328380:CDS |
| TCAGGATGCACAGAATCGAA+TGG | 0.637168 | 2_4:+40776355 | Msa0328380:CDS |
| AGGATAATATGCCGTAGCTG+AGG | 0.638343 | 2_4:-40776683 | None:intergenic |
| ATGAATAAGAAGAAGCTGCA+TGG | 0.646230 | 2_4:+40773891 | Msa0328380:CDS |
| GAGTTGCTCACATTAGATGA+GGG | 0.650819 | 2_4:-40775558 | None:intergenic |
| TGGCAGCAAGATAAATGGAA+CGG | 0.653548 | 2_4:+40776617 | Msa0328380:CDS |
| AGCAACTCATCAGAAGTGAA+GGG | 0.655536 | 2_4:+40775573 | Msa0328380:CDS |
| AAATAGTAGAGACACTCAAG+AGG | 0.657180 | 2_4:+40776733 | Msa0328380:CDS |
| GAAGCTGAAACTCAGAAACA+AGG | 0.666505 | 2_4:+40776061 | Msa0328380:CDS |
| ACCACACAAGATGTAGCACA+AGG | 0.668664 | 2_4:+40775441 | Msa0328380:CDS |
| GTTGAAAGACGGAACCAGGA+GGG | 0.679018 | 2_4:-40775341 | None:intergenic |
| GAAAAGATCGATCTACCACT+CGG | 0.689012 | 2_4:-40775492 | None:intergenic |
| ATAAGGTGAAATATAGCCAG+GGG | 0.699657 | 2_4:-40775376 | None:intergenic |
| GTTGAGAAAGTGAATGACTG+AGG | 0.708180 | 2_4:+40777762 | Msa0328380:CDS |
| TGAACATAATAATTCCAACA+TGG | 0.712248 | 2_4:+40773929 | Msa0328380:CDS |
| TGTTGAAAGACGGAACCAGG+AGG | 0.716372 | 2_4:-40775342 | None:intergenic |
| GTTGGTTGTAAAGAACATGG+AGG | 0.739574 | 2_4:+40777728 | Msa0328380:CDS |
| CCACACAAGATGTAGCACAA+GGG | 0.750655 | 2_4:+40775442 | Msa0328380:CDS |
| ATCAGCTGTAAAGAACATGG+AGG | 0.773499 | 2_4:+40777698 | Msa0328380:CDS |
| GAATTGGCCAGTAAACCGAG+TGG | 0.774424 | 2_4:+40775477 | Msa0328380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTGAAAAAGAAAATCT+GGG | - | chr2_4:40773496-40773515 | None:intergenic | 15.0% |
| !!! | TATTTTTGAAAAAGAAAATC+TGG | - | chr2_4:40773497-40773516 | None:intergenic | 15.0% |
| !!! | AAATATTGTTTTTTGTCTTT+TGG | + | chr2_4:40773619-40773638 | Msa0328380:five_prime_UTR | 15.0% |
| !!! | AATATTGTTTTTTGTCTTTT+GGG | + | chr2_4:40773620-40773639 | Msa0328380:five_prime_UTR | 15.0% |
| !!! | ATGTTTTCTTATTGTATTTT+TGG | + | chr2_4:40774079-40774098 | Msa0328380:intron | 15.0% |
| !!! | TTTGAATTCTGAAATAAATT+TGG | + | chr2_4:40774944-40774963 | Msa0328380:intron | 15.0% |
| !!! | TTGAATTCTGAAATAAATTT+GGG | + | chr2_4:40774945-40774964 | Msa0328380:intron | 15.0% |
| !! | GAAAATAACATGTTAATAAA+AGG | + | chr2_4:40774986-40775005 | Msa0328380:intron | 15.0% |
| !!! | GTAAATATCTAAATTTTTGT+TGG | + | chr2_4:40775195-40775214 | Msa0328380:intron | 15.0% |
| !!! | AATTTTTGTTGGTTTTATTT+AGG | + | chr2_4:40775206-40775225 | Msa0328380:intron | 15.0% |
| !!! | TTTCTCTTTCTAAAATTATA+AGG | - | chr2_4:40775774-40775793 | None:intergenic | 15.0% |
| !! | CATTTATTAAATATTGTGAA+AGG | - | chr2_4:40777189-40777208 | None:intergenic | 15.0% |
| !! | TAGTAGAAAAATAAAGAATT+GGG | - | chr2_4:40777330-40777349 | None:intergenic | 15.0% |
| !! | ATAGTAGAAAAATAAAGAAT+TGG | - | chr2_4:40777331-40777350 | None:intergenic | 15.0% |
| !!! | AATTCTTTATTTTTCTACTA+TGG | + | chr2_4:40777330-40777349 | Msa0328380:intron | 15.0% |
| !! | AAGACTTCTAAATAAATTAT+TGG | - | chr2_4:40777376-40777395 | None:intergenic | 15.0% |
| !! | TAATTGTAACACAATTAAAA+AGG | - | chr2_4:40777406-40777425 | None:intergenic | 15.0% |
| !! | TATAAATGAAAAGTAAAGAA+GGG | - | chr2_4:40777432-40777451 | None:intergenic | 15.0% |
| !! | ATATAAATGAAAAGTAAAGA+AGG | - | chr2_4:40777433-40777452 | None:intergenic | 15.0% |
| !!! | TCTTTGCTTATATATAATTT+TGG | + | chr2_4:40777628-40777647 | Msa0328380:intron | 15.0% |
| !! | TGAATAGAATGTCTATATAA+AGG | - | chr2_4:40773320-40773339 | None:intergenic | 20.0% |
| !! | AATGGATAATCTTATTATGT+TGG | - | chr2_4:40773364-40773383 | None:intergenic | 20.0% |
| !!! | TCTTTTTCAAAAATATCTTC+TGG | + | chr2_4:40773502-40773521 | Msa0328380:five_prime_UTR | 20.0% |
| !!! | CTTTTTCAAAAATATCTTCT+GGG | + | chr2_4:40773503-40773522 | Msa0328380:five_prime_UTR | 20.0% |
| !!! | TGTTCTTCTTGTTTATTTTT+TGG | + | chr2_4:40773764-40773783 | Msa0328380:intron | 20.0% |
| !!! | ATTTGTTGTATGTTATGTTA+AGG | + | chr2_4:40774102-40774121 | Msa0328380:intron | 20.0% |
| !!! | TTTATGTTTTTCCTTTCTTA+CGG | + | chr2_4:40774520-40774539 | Msa0328380:intron | 20.0% |
| !!! | TCATGATAATTGTGTTATTA+TGG | + | chr2_4:40774667-40774686 | Msa0328380:intron | 20.0% |
| !! | AAACAATAGTTAAAACAGAA+CGG | - | chr2_4:40775681-40775700 | None:intergenic | 20.0% |
| !!! | ATTTTAGAAAGAGAAATAAG+TGG | + | chr2_4:40775778-40775797 | Msa0328380:intron | 20.0% |
| !! | AGATTATTCTAAATAGTTTG+TGG | + | chr2_4:40775867-40775886 | Msa0328380:intron | 20.0% |
| !! | AATGTCAAAAAAGAATTCAT+TGG | - | chr2_4:40777106-40777125 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTGACATTATTGA+TGG | + | chr2_4:40777111-40777130 | Msa0328380:intron | 20.0% |
| !! | CAAAGTAATTAATAACTCTT+TGG | + | chr2_4:40777272-40777291 | Msa0328380:intron | 20.0% |
| !! | TGAGTAGATTATGAAAATTT+GGG | - | chr2_4:40777462-40777481 | None:intergenic | 20.0% |
| !! | ATGAGTAGATTATGAAAATT+TGG | - | chr2_4:40777463-40777482 | None:intergenic | 20.0% |
| !! | CAAAAACTAAAGAAATGAAA+GGG | - | chr2_4:40777600-40777619 | None:intergenic | 20.0% |
| ! | GATAATCTTATTATGTTGGT+TGG | - | chr2_4:40773360-40773379 | None:intergenic | 25.0% |
| ! | AAAGAAGAAAGAGAAAAACA+CGG | - | chr2_4:40773389-40773408 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTGTCTAGATTTC+CGG | - | chr2_4:40773456-40773475 | None:intergenic | 25.0% |
| !!! | TTAAGAGGTTTTGAGAATTT+TGG | + | chr2_4:40773666-40773685 | Msa0328380:five_prime_UTR | 25.0% |
| ! | TGAACATAATAATTCCAACA+TGG | + | chr2_4:40773929-40773948 | Msa0328380:CDS | 25.0% |
| ! | TTATGTTAAGGTTTCTTCAA+AGG | + | chr2_4:40774114-40774133 | Msa0328380:intron | 25.0% |
| ! | TATGTTAAGGTTTCTTCAAA+GGG | + | chr2_4:40774115-40774134 | Msa0328380:intron | 25.0% |
| ! | TATTATGGATATTACTATCC+AGG | + | chr2_4:40774271-40774290 | Msa0328380:CDS | 25.0% |
| ! | GAAAATCAAGGATATTATGT+CGG | + | chr2_4:40774583-40774602 | Msa0328380:CDS | 25.0% |
| ! | TCAGATTCAAGTATTTATAC+AGG | - | chr2_4:40774755-40774774 | None:intergenic | 25.0% |
| ! | TTAAGCATATATCTTCAGAA+AGG | + | chr2_4:40774869-40774888 | Msa0328380:intron | 25.0% |
| ! | TAAGCATATATCTTCAGAAA+GGG | + | chr2_4:40774870-40774889 | Msa0328380:intron | 25.0% |
| !!! | TTCTGAAATAAATTTGGGAT+TGG | + | chr2_4:40774950-40774969 | Msa0328380:intron | 25.0% |
| ! | TATTGCATTACACATGAAAA+TGG | + | chr2_4:40775018-40775037 | Msa0328380:intron | 25.0% |
| !!! | ATTTTTTCCTTGAATGTTAC+AGG | - | chr2_4:40775087-40775106 | None:intergenic | 25.0% |
| ! | TAACATTCAAGGAAAAAATG+TGG | + | chr2_4:40775088-40775107 | Msa0328380:intron | 25.0% |
| ! | GTTGAAGAAACATCTAATAT+TGG | - | chr2_4:40775606-40775625 | None:intergenic | 25.0% |
| ! | GAACTATATATTGAACTGTT+GGG | + | chr2_4:40775800-40775819 | Msa0328380:intron | 25.0% |
| ! | AACTATATATTGAACTGTTG+GGG | + | chr2_4:40775801-40775820 | Msa0328380:intron | 25.0% |
| !! | AAGTTTTCTACATACAATCA+AGG | + | chr2_4:40775963-40775982 | Msa0328380:CDS | 25.0% |
| !!! | TTAGGAAAGTTGTTTTGATA+GGG | - | chr2_4:40776002-40776021 | None:intergenic | 25.0% |
| !!! | ATTAGGAAAGTTGTTTTGAT+AGG | - | chr2_4:40776003-40776022 | None:intergenic | 25.0% |
| ! | ATGAGCAAATAAAACACAAA+CGG | - | chr2_4:40776465-40776484 | None:intergenic | 25.0% |
| !!! | TTTTGATAATTGTTGAGTTC+AGG | + | chr2_4:40776520-40776539 | Msa0328380:intron | 25.0% |
| ! | AAGATACAGAAGAAATAACT+AGG | - | chr2_4:40776806-40776825 | None:intergenic | 25.0% |
| ! | TTAGTAAGAAGTAAGAACTT+TGG | - | chr2_4:40777053-40777072 | None:intergenic | 25.0% |
| !! | TTTAGAATAGTTTGTCAACT+AGG | - | chr2_4:40777212-40777231 | None:intergenic | 25.0% |
| !!! | ATACCCTTTTTGGAATAATT+TGG | + | chr2_4:40777236-40777255 | Msa0328380:intron | 25.0% |
| ! | ACTCCAAATTATTCCAAAAA+GGG | - | chr2_4:40777242-40777261 | None:intergenic | 25.0% |
| ! | AACTCCAAATTATTCCAAAA+AGG | - | chr2_4:40777243-40777262 | None:intergenic | 25.0% |
| !!! | TTTTTGGAATAATTTGGAGT+TGG | + | chr2_4:40777242-40777261 | Msa0328380:intron | 25.0% |
| !!! | TTTTGGAATAATTTGGAGTT+GGG | + | chr2_4:40777243-40777262 | Msa0328380:intron | 25.0% |
| ! | TGTAACACAATTAAAAAGGT+GGG | - | chr2_4:40777402-40777421 | None:intergenic | 25.0% |
| ! | TTGTAACACAATTAAAAAGG+TGG | - | chr2_4:40777403-40777422 | None:intergenic | 25.0% |
| !!! | ACTTATTTTTACTCGAAACT+CGG | + | chr2_4:40777518-40777537 | Msa0328380:intron | 25.0% |
| !!! | AAGAAATGAAAGGGTTTTTT+CGG | - | chr2_4:40777591-40777610 | None:intergenic | 25.0% |
| ! | GCAAAAACTAAAGAAATGAA+AGG | - | chr2_4:40777601-40777620 | None:intergenic | 25.0% |
| AGAGAGAAAATGAAGAACAA+TGG | - | chr2_4:40773257-40773276 | None:intergenic | 30.0% | |
| ! | TTTGGTGTAAAAATGAGAGA+TGG | - | chr2_4:40773416-40773435 | None:intergenic | 30.0% |
| GGTGCTAAAAAAATGGAATT+TGG | - | chr2_4:40773434-40773453 | None:intergenic | 30.0% | |
| !!! | AATTCCATTTTTTTAGCACC+CGG | + | chr2_4:40773434-40773453 | Msa0328380:five_prime_UTR | 30.0% |
| !!! | TTTTTTGTGTCTAGATTTCC+GGG | - | chr2_4:40773455-40773474 | None:intergenic | 30.0% |
| ! | TTTTGTCTCTTCAACTGAAA+AGG | - | chr2_4:40773571-40773590 | None:intergenic | 30.0% |
| !!! | ATGTAGTGGATTGTTTTAAG+AGG | + | chr2_4:40773651-40773670 | Msa0328380:five_prime_UTR | 30.0% |
| ! | GGTTGTATTATAAGAGCTTT+TGG | + | chr2_4:40773687-40773706 | Msa0328380:five_prime_UTR | 30.0% |
| GATTATAAGTGCTTCTTCTA+TGG | + | chr2_4:40773709-40773728 | Msa0328380:exon | 30.0% | |
| AGATCATGTGTATCATCAAT+AGG | + | chr2_4:40774163-40774182 | Msa0328380:CDS | 30.0% | |
| TATTCTGCTGGTAGTTATTA+TGG | + | chr2_4:40774256-40774275 | Msa0328380:CDS | 30.0% | |
| ! | ATTGATAACACTGACGAATA+GGG | - | chr2_4:40774317-40774336 | None:intergenic | 30.0% |
| TAATCATTCTACCGTAAGAA+AGG | - | chr2_4:40774534-40774553 | None:intergenic | 30.0% | |
| ! | CTGATAATTTGCATTGCATT+AGG | + | chr2_4:40774771-40774790 | Msa0328380:intron | 30.0% |
| !!! | AATTTGGGATTGGCTAATTT+TGG | + | chr2_4:40774960-40774979 | Msa0328380:intron | 30.0% |
| AGGGAATCGTTATAATGAAT+TGG | + | chr2_4:40775461-40775480 | Msa0328380:CDS | 30.0% | |
| GAAGAAACATCTAATATTGG+TGG | - | chr2_4:40775603-40775622 | None:intergenic | 30.0% | |
| GGAACTATATATTGAACTGT+TGG | + | chr2_4:40775799-40775818 | Msa0328380:intron | 30.0% | |
| !! | AATAGTTTGTGGTGTTTTTC+AGG | + | chr2_4:40775878-40775897 | Msa0328380:intron | 30.0% |
| !!! | TAGGAAAGTTGTTTTGATAG+GGG | - | chr2_4:40776001-40776020 | None:intergenic | 30.0% |
| !! | GTACTTGTTGCTTTCATATT+AGG | - | chr2_4:40776020-40776039 | None:intergenic | 30.0% |
| TCATATTTGGTTGGAAAATC+AGG | - | chr2_4:40776221-40776240 | None:intergenic | 30.0% | |
| ! | GAAAAGTGCATGATCATATT+TGG | - | chr2_4:40776234-40776253 | None:intergenic | 30.0% |
| TACCGAAAAGAAAAGGAATA+CGG | - | chr2_4:40776402-40776421 | None:intergenic | 30.0% | |
| TGAGCAAATAAAACACAAAC+GGG | - | chr2_4:40776464-40776483 | None:intergenic | 30.0% | |
| ! | AGTGGATTTCAACAAAAGTA+TGG | + | chr2_4:40776589-40776608 | Msa0328380:CDS | 30.0% |
| ! | TCAACAAAAGTATGGATTTC+TGG | + | chr2_4:40776597-40776616 | Msa0328380:CDS | 30.0% |
| !! | TTATAATGTGCCATTTGACA+GGG | - | chr2_4:40776649-40776668 | None:intergenic | 30.0% |
| !! | TTTATAATGTGCCATTTGAC+AGG | - | chr2_4:40776650-40776669 | None:intergenic | 30.0% |
| GTAAAATCAAACCTGTACAT+TGG | - | chr2_4:40777010-40777029 | None:intergenic | 30.0% | |
| !! | AGAACTTTGGAATAAGAACA+AGG | - | chr2_4:40777040-40777059 | None:intergenic | 30.0% |
| CAACCACAATTATGCAAAAA+TGG | - | chr2_4:40777159-40777178 | None:intergenic | 30.0% | |
| ! | CATTTTTGCATAATTGTGGT+TGG | + | chr2_4:40777157-40777176 | Msa0328380:intron | 30.0% |
| ! | TCTAAACTTGATACCCTTTT+TGG | + | chr2_4:40777226-40777245 | Msa0328380:intron | 30.0% |
| ATGTTCTTTACAACCAACTT+AGG | - | chr2_4:40777726-40777745 | None:intergenic | 30.0% | |
| !! | TAAGTTGGTTGTAAAGAACA+TGG | + | chr2_4:40777725-40777744 | Msa0328380:CDS | 30.0% |
| AAAGAGAAAAACACGGTGAA+TGG | - | chr2_4:40773382-40773401 | None:intergenic | 35.0% | |
| ATTTCCGGGTGCTAAAAAAA+TGG | - | chr2_4:40773441-40773460 | None:intergenic | 35.0% | |
| ! | ATCTGGGCAAGAACTATTTT+TGG | - | chr2_4:40773480-40773499 | None:intergenic | 35.0% |
| ATGGCTGCTGAATTGAAAAA+AGG | + | chr2_4:40773728-40773747 | Msa0328380:CDS | 35.0% | |
| ATGAATAAGAAGAAGCTGCA+TGG | + | chr2_4:40773891-40773910 | Msa0328380:CDS | 35.0% | |
| !!! | GCTTCTGGTAGTTTTAAAGA+AGG | + | chr2_4:40774190-40774209 | Msa0328380:CDS | 35.0% |
| ATAAGCAACATTCTGATCAG+TGG | - | chr2_4:40774239-40774258 | None:intergenic | 35.0% | |
| ! | GATTGATAACACTGACGAAT+AGG | - | chr2_4:40774318-40774337 | None:intergenic | 35.0% |
| TCTTACGGTAGAATGATTAC+AGG | + | chr2_4:40774535-40774554 | Msa0328380:intron | 35.0% | |
| GGTAGAATGATTACAGGTTA+TGG | + | chr2_4:40774541-40774560 | Msa0328380:intron | 35.0% | |
| AGAATGATTACAGGTTATGG+TGG | + | chr2_4:40774544-40774563 | Msa0328380:intron | 35.0% | |
| !!! | ACAGGTTATGGTGGATTTTA+TGG | + | chr2_4:40774553-40774572 | Msa0328380:intron | 35.0% |
| TATGGAGAGCAAGAAAATCA+AGG | + | chr2_4:40774571-40774590 | Msa0328380:CDS | 35.0% | |
| ! | AAGTTTCTTGAGCTGGTTTA+TGG | + | chr2_4:40774636-40774655 | Msa0328380:intron | 35.0% |
| AATTGACCAGATATGCAACA+AGG | - | chr2_4:40774714-40774733 | None:intergenic | 35.0% | |
| CTCACAACAACATGAAACAA+TGG | - | chr2_4:40774817-40774836 | None:intergenic | 35.0% | |
| TCCAATTGGTTGTTGAAAGA+CGG | - | chr2_4:40775355-40775374 | None:intergenic | 35.0% | |
| ATAAGGTGAAATATAGCCAG+GGG | - | chr2_4:40775379-40775398 | None:intergenic | 35.0% | |
| CATAAGGTGAAATATAGCCA+GGG | - | chr2_4:40775380-40775399 | None:intergenic | 35.0% | |
| TACTTCCATCAACATACTCA+TGG | + | chr2_4:40775406-40775425 | Msa0328380:CDS | 35.0% | |
| ACTTCCATCAACATACTCAT+GGG | + | chr2_4:40775407-40775426 | Msa0328380:CDS | 35.0% | |
| !! | GTTACCTTGTTTGCTTGTTT+TGG | - | chr2_4:40775648-40775667 | None:intergenic | 35.0% |
| CAATAGTTAAAACAGAACGG+AGG | - | chr2_4:40775678-40775697 | None:intergenic | 35.0% | |
| TTAGACAGCGACAAATAAAC+AGG | - | chr2_4:40775709-40775728 | None:intergenic | 35.0% | |
| TATGTAGAAAACTTTGCGAC+GGG | - | chr2_4:40775957-40775976 | None:intergenic | 35.0% | |
| GTATGTAGAAAACTTTGCGA+CGG | - | chr2_4:40775958-40775977 | None:intergenic | 35.0% | |
| ACATACAATCAAGGAAAGAG+TGG | + | chr2_4:40775972-40775991 | Msa0328380:CDS | 35.0% | |
| CATACAATCAAGGAAAGAGT+GGG | + | chr2_4:40775973-40775992 | Msa0328380:CDS | 35.0% | |
| TATGAAAGCAACAAGTACCA+AGG | + | chr2_4:40776022-40776041 | Msa0328380:CDS | 35.0% | |
| ATGAAAGCAACAAGTACCAA+GGG | + | chr2_4:40776023-40776042 | Msa0328380:CDS | 35.0% | |
| TCACTTAATGAGCAGAATCA+AGG | + | chr2_4:40776092-40776111 | Msa0328380:CDS | 35.0% | |
| ! | CCTTTTGCATTAACTGTTCT+AGG | - | chr2_4:40776119-40776138 | None:intergenic | 35.0% |
| CCTAGAACAGTTAATGCAAA+AGG | + | chr2_4:40776116-40776135 | Msa0328380:CDS | 35.0% | |
| !! | GCAAAAGGTACTTTAAACTC+TGG | + | chr2_4:40776131-40776150 | Msa0328380:CDS | 35.0% |
| !! | AAAGGTACTTTAAACTCTGG+AGG | + | chr2_4:40776134-40776153 | Msa0328380:CDS | 35.0% |
| ! | TTAAACTCTGGAGGTAATTC+TGG | + | chr2_4:40776143-40776162 | Msa0328380:CDS | 35.0% |
| ! | ATGTTGATCTGTCCTGATTT+TGG | - | chr2_4:40776192-40776211 | None:intergenic | 35.0% |
| ATTTGGTTGGAAAATCAGGA+AGG | - | chr2_4:40776217-40776236 | None:intergenic | 35.0% | |
| AGTGCATGATCATATTTGGT+TGG | - | chr2_4:40776230-40776249 | None:intergenic | 35.0% | |
| ! | TCCCGTATTCCTTTTCTTTT+CGG | + | chr2_4:40776397-40776416 | Msa0328380:CDS | 35.0% |
| ACCGAAAAGAAAAGGAATAC+GGG | - | chr2_4:40776401-40776420 | None:intergenic | 35.0% | |
| GATAGCATACCGAAAAGAAA+AGG | - | chr2_4:40776409-40776428 | None:intergenic | 35.0% | |
| !! | ATTTCTGGCAGCAAGATAAA+TGG | + | chr2_4:40776612-40776631 | Msa0328380:CDS | 35.0% |
| ATATTCCAAATCCTCAGCTA+CGG | + | chr2_4:40776672-40776691 | Msa0328380:CDS | 35.0% | |
| ! | GTGTCTCTACTATTTGTTAC+AGG | - | chr2_4:40776728-40776747 | None:intergenic | 35.0% |
| AAATAGTAGAGACACTCAAG+AGG | + | chr2_4:40776733-40776752 | Msa0328380:CDS | 35.0% | |
| TTGAGCATTTCAATACCTTG+CGG | - | chr2_4:40776877-40776896 | None:intergenic | 35.0% | |
| TGTATCGAGAACATCGATAT+TGG | + | chr2_4:40776912-40776931 | Msa0328380:CDS | 35.0% | |
| !! | GGACCATTTTTGCATAATTG+TGG | + | chr2_4:40777153-40777172 | Msa0328380:intron | 35.0% |
| ! | TTTTGCATAATTGTGGTTGG+AGG | + | chr2_4:40777160-40777179 | Msa0328380:intron | 35.0% |
| !! | CTATGGTTGATGTGTTCTTT+TGG | + | chr2_4:40777347-40777366 | Msa0328380:intron | 35.0% |
| !!! | TTTTTTCGGTTGGACTAGTT+TGG | - | chr2_4:40777577-40777596 | None:intergenic | 35.0% |
| !!! | AATGAAAGGGTTTTTTCGGT+TGG | - | chr2_4:40777587-40777606 | None:intergenic | 35.0% |
| CATATCAGCTGTAAAGAACA+TGG | + | chr2_4:40777695-40777714 | Msa0328380:CDS | 35.0% | |
| TTCACTTTCTCAACCAACTT+AGG | - | chr2_4:40777756-40777775 | None:intergenic | 35.0% | |
| ! | TTTGGGTTTCTTGCATGTAG+TGG | + | chr2_4:40773637-40773656 | Msa0328380:five_prime_UTR | 40.0% |
| GTTAAGGTTTCTTCAAAGGG+TGG | + | chr2_4:40774118-40774137 | Msa0328380:intron | 40.0% | |
| ACACATGATCTTGCATCAGA+TGG | - | chr2_4:40774154-40774173 | None:intergenic | 40.0% | |
| TCATCAATAGGAGATGCTTC+TGG | + | chr2_4:40774175-40774194 | Msa0328380:CDS | 40.0% | |
| CAACATTCTGATCAGTGGAT+TGG | - | chr2_4:40774234-40774253 | None:intergenic | 40.0% | |
| ! | CAGAATGTTGCTTATTCTGC+TGG | + | chr2_4:40774244-40774263 | Msa0328380:CDS | 40.0% |
| TTTGTTCAGATTCCGCTATG+CGG | + | chr2_4:40774440-40774459 | Msa0328380:intron | 40.0% | |
| ATCCTGTAAGTTTCTTGAGC+TGG | + | chr2_4:40774629-40774648 | Msa0328380:intron | 40.0% | |
| AACCAGCTCAAGAAACTTAC+AGG | - | chr2_4:40774634-40774653 | None:intergenic | 40.0% | |
| ! | TAGTTGCCTTGTTGCATATC+TGG | + | chr2_4:40774705-40774724 | Msa0328380:intron | 40.0% |
| CTGATGTCCTGTAACATTCA+AGG | + | chr2_4:40775077-40775096 | Msa0328380:intron | 40.0% | |
| TAGGTCATGCAAGCAGATAA+TGG | + | chr2_4:40775225-40775244 | Msa0328380:intron | 40.0% | |
| TCTTATGTCTATCTCATGCC+AGG | + | chr2_4:40775249-40775268 | Msa0328380:CDS | 40.0% | |
| TCCGTCTTTCAACAACCAAT+TGG | + | chr2_4:40775351-40775370 | Msa0328380:CDS | 40.0% | |
| CCATAAGGTGAAATATAGCC+AGG | - | chr2_4:40775381-40775400 | None:intergenic | 40.0% | |
| CCTGGCTATATTTCACCTTA+TGG | + | chr2_4:40775378-40775397 | Msa0328380:CDS | 40.0% | |
| GATGGAAGTAACTCACCATA+AGG | - | chr2_4:40775396-40775415 | None:intergenic | 40.0% | |
| GAATCCCATGAGTATGTTGA+TGG | - | chr2_4:40775414-40775433 | None:intergenic | 40.0% | |
| GAAAAGATCGATCTACCACT+CGG | - | chr2_4:40775495-40775514 | None:intergenic | 40.0% | |
| GAGTTGCTCACATTAGATGA+GGG | - | chr2_4:40775561-40775580 | None:intergenic | 40.0% | |
| TGAGTTGCTCACATTAGATG+AGG | - | chr2_4:40775562-40775581 | None:intergenic | 40.0% | |
| AGCAACTCATCAGAAGTGAA+GGG | + | chr2_4:40775573-40775592 | Msa0328380:CDS | 40.0% | |
| AAAACAGAACGGAGGAAGTA+AGG | - | chr2_4:40775670-40775689 | None:intergenic | 40.0% | |
| !!! | GTTTTTCAGGCATCCATTTC+TGG | + | chr2_4:40775891-40775910 | Msa0328380:intron | 40.0% |
| ATTGCATCTGAATGGAGAAC+AGG | - | chr2_4:40775918-40775937 | None:intergenic | 40.0% | |
| CATTCAGATGCAATGCCAAA+GGG | + | chr2_4:40775924-40775943 | Msa0328380:CDS | 40.0% | |
| GAAGCTGAAACTCAGAAACA+AGG | + | chr2_4:40776061-40776080 | Msa0328380:CDS | 40.0% | |
| !! | TCTGGAGATAAGAGTGTCAA+TGG | + | chr2_4:40776161-40776180 | Msa0328380:CDS | 40.0% |
| TCAATGGTGACACCAAAATC+AGG | + | chr2_4:40776177-40776196 | Msa0328380:CDS | 40.0% | |
| ! | AGAGCATCAAGTACGATGTA+TGG | + | chr2_4:40776291-40776310 | Msa0328380:CDS | 40.0% |
| GAGCATCAAGTACGATGTAT+GGG | + | chr2_4:40776292-40776311 | Msa0328380:CDS | 40.0% | |
| GTACACCTAATGGCAATAAG+AGG | + | chr2_4:40776318-40776337 | Msa0328380:CDS | 40.0% | |
| CAGAATCGAATGGAAGAGAA+AGG | + | chr2_4:40776365-40776384 | Msa0328380:CDS | 40.0% | |
| CTCTGTTCTGTTAAGACCTA+CGG | + | chr2_4:40776438-40776457 | Msa0328380:intron | 40.0% | |
| ! | AACGCTAGTGGTCAATTTTG+TGG | + | chr2_4:40776545-40776564 | Msa0328380:CDS | 40.0% |
| TGGCAGCAAGATAAATGGAA+CGG | + | chr2_4:40776617-40776636 | Msa0328380:CDS | 40.0% | |
| ACGGATATTTCCCTGTCAAA+TGG | + | chr2_4:40776636-40776655 | Msa0328380:CDS | 40.0% | |
| GCTTGTGATCATTATTCTCG+AGG | - | chr2_4:40776706-40776725 | None:intergenic | 40.0% | |
| ! | TTCCAGATTCATTTTCCGCA+AGG | + | chr2_4:40776859-40776878 | Msa0328380:intron | 40.0% |
| TACCTTGCGGAAAATGAATC+TGG | - | chr2_4:40776864-40776883 | None:intergenic | 40.0% | |
| ! | TTTTTACGAAACCCGTCAGA+AGG | + | chr2_4:40776945-40776964 | Msa0328380:CDS | 40.0% |
| TGTACATTGGTATGTGGCAT+AGG | - | chr2_4:40776997-40777016 | None:intergenic | 40.0% | |
| TATGCCACATACCAATGTAC+AGG | + | chr2_4:40776996-40777015 | Msa0328380:CDS | 40.0% | |
| CAAACCTGTACATTGGTATG+TGG | - | chr2_4:40777003-40777022 | None:intergenic | 40.0% | |
| GAAGACTTAACAAGTGCACT+TGG | + | chr2_4:40777663-40777682 | Msa0328380:CDS | 40.0% | |
| ATCAGCTGTAAAGAACATGG+AGG | + | chr2_4:40777698-40777717 | Msa0328380:CDS | 40.0% | |
| GTTGGTTGTAAAGAACATGG+AGG | + | chr2_4:40777728-40777747 | Msa0328380:CDS | 40.0% | |
| CACATGCAAGCTTACCATGT+TGG | - | chr2_4:40773946-40773965 | None:intergenic | 45.0% | |
| AAGGTTTCTTCAAAGGGTGG+TGG | + | chr2_4:40774121-40774140 | Msa0328380:intron | 45.0% | |
| ACTGACGAATAGGGAACCAT+GGG | - | chr2_4:40774308-40774327 | None:intergenic | 45.0% | |
| ACATTAACGCTACCGCATAG+CGG | - | chr2_4:40774455-40774474 | None:intergenic | 45.0% | |
| AGGACATCAGAGATGATGTC+GGG | - | chr2_4:40775067-40775086 | None:intergenic | 45.0% | |
| CAGGACATCAGAGATGATGT+CGG | - | chr2_4:40775068-40775087 | None:intergenic | 45.0% | |
| TACTTTCCTGTGAACACACC+TGG | + | chr2_4:40775294-40775313 | Msa0328380:CDS | 45.0% | |
| ATATAGCCAGGGGATCCAAT+TGG | - | chr2_4:40775369-40775388 | None:intergenic | 45.0% | |
| ACCACACAAGATGTAGCACA+AGG | + | chr2_4:40775441-40775460 | Msa0328380:CDS | 45.0% | |
| CCACACAAGATGTAGCACAA+GGG | + | chr2_4:40775442-40775461 | Msa0328380:CDS | 45.0% | |
| ! | TTTTCTTCGCAGAGTCGTAC+TGG | + | chr2_4:40775510-40775529 | Msa0328380:CDS | 45.0% |
| GAGCAACTCATCAGAAGTGA+AGG | + | chr2_4:40775572-40775591 | Msa0328380:CDS | 45.0% | |
| !!! | CCTTGTTTGCTTGTTTTGGC+TGG | - | chr2_4:40775644-40775663 | None:intergenic | 45.0% |
| CCAGCCAAAACAAGCAAACA+AGG | + | chr2_4:40775641-40775660 | Msa0328380:CDS | 45.0% | |
| TGAACTGTTGGGGATTTCGT+AGG | + | chr2_4:40775811-40775830 | Msa0328380:intron | 45.0% | |
| ATGGAGAACAGGACCAGAAA+TGG | - | chr2_4:40775907-40775926 | None:intergenic | 45.0% | |
| CCTTTGGCATTGCATCTGAA+TGG | - | chr2_4:40775926-40775945 | None:intergenic | 45.0% | |
| CCATTCAGATGCAATGCCAA+AGG | + | chr2_4:40775923-40775942 | Msa0328380:CDS | 45.0% | |
| AAGCAACAAGTACCAAGGGA+TGG | + | chr2_4:40776027-40776046 | Msa0328380:CDS | 45.0% | |
| AGCAACAAGTACCAAGGGAT+GGG | + | chr2_4:40776028-40776047 | Msa0328380:CDS | 45.0% | |
| TCGAGCCTCTTATTGCCATT+AGG | - | chr2_4:40776326-40776345 | None:intergenic | 45.0% | |
| TCAGGATGCACAGAATCGAA+TGG | + | chr2_4:40776355-40776374 | Msa0328380:CDS | 45.0% | |
| ATAAAACACAAACGGGCCGT+AGG | - | chr2_4:40776457-40776476 | None:intergenic | 45.0% | |
| ATCCACTCGTCCAATCATCT+CGG | - | chr2_4:40776576-40776595 | None:intergenic | 45.0% | |
| ATATGCCGTAGCTGAGGATT+TGG | - | chr2_4:40776680-40776699 | None:intergenic | 45.0% | |
| AGGATAATATGCCGTAGCTG+AGG | - | chr2_4:40776686-40776705 | None:intergenic | 45.0% | |
| TCTCTTGCATGACCTTCTGA+CGG | - | chr2_4:40776960-40776979 | None:intergenic | 45.0% | |
| TGGATGAGTGCATGTGATTG+TGG | + | chr2_4:40777131-40777150 | Msa0328380:intron | 45.0% | |
| GGATGAGTGCATGTGATTGT+GGG | + | chr2_4:40777132-40777151 | Msa0328380:intron | 45.0% | |
| GAACATGGAGGATCCTAAGT+TGG | + | chr2_4:40777710-40777729 | Msa0328380:CDS | 45.0% | |
| GAACATGGAGGATCCTAAGT+TGG | + | chr2_4:40777710-40777729 | Msa0328380:CDS | 45.0% | |
| !!! | TTTATTTTTTTTATATTTTG+CGG | + | chr2_4:40773993-40774012 | Msa0328380:intron | 5.0% |
| ACGAATAGGGAACCATGGGA+GGG | - | chr2_4:40774304-40774323 | None:intergenic | 50.0% | |
| CACTGACGAATAGGGAACCA+TGG | - | chr2_4:40774309-40774328 | None:intergenic | 50.0% | |
| GCTATGCGGTAGCGTTAATG+TGG | + | chr2_4:40774454-40774473 | Msa0328380:intron | 50.0% | |
| !! | TTATGTCGGCGCTGATGCTA+TGG | + | chr2_4:40774597-40774616 | Msa0328380:CDS | 50.0% |
| CTCATGCCAGGATATCAGAC+TGG | + | chr2_4:40775261-40775280 | Msa0328380:CDS | 50.0% | |
| GAGTAGCCAGTCTGATATCC+TGG | - | chr2_4:40775270-40775289 | None:intergenic | 50.0% | |
| TGATACTGGACATCGACACC+AGG | - | chr2_4:40775315-40775334 | None:intergenic | 50.0% | |
| !! | TGGTGTCGATGTCCAGTATC+AGG | + | chr2_4:40775314-40775333 | Msa0328380:CDS | 50.0% |
| CAGGAGGGTAAACCTGATAC+TGG | - | chr2_4:40775329-40775348 | None:intergenic | 50.0% | |
| CAGTATCAGGTTTACCCTCC+TGG | + | chr2_4:40775327-40775346 | Msa0328380:CDS | 50.0% | |
| GTTGAAAGACGGAACCAGGA+GGG | - | chr2_4:40775344-40775363 | None:intergenic | 50.0% | |
| TGTTGAAAGACGGAACCAGG+AGG | - | chr2_4:40775345-40775364 | None:intergenic | 50.0% | |
| GGTTGTTGAAAGACGGAACC+AGG | - | chr2_4:40775348-40775367 | None:intergenic | 50.0% | |
| CAACAACCAATTGGATCCCC+TGG | + | chr2_4:40775360-40775379 | Msa0328380:CDS | 50.0% | |
| CCCTTGTGCTACATCTTGTG+TGG | - | chr2_4:40775445-40775464 | None:intergenic | 50.0% | |
| GAATTGGCCAGTAAACCGAG+TGG | + | chr2_4:40775477-40775496 | Msa0328380:CDS | 50.0% | |
| CGATCTACCACTCGGTTTAC+TGG | - | chr2_4:40775487-40775506 | None:intergenic | 50.0% | |
| CTCAGTACTAACCCATCCCT+TGG | - | chr2_4:40776042-40776061 | None:intergenic | 50.0% | |
| GTATGGGCGAGTACACCTAA+TGG | + | chr2_4:40776308-40776327 | Msa0328380:CDS | 50.0% | |
| GAGGCTCGACAATGCATTTC+AGG | + | chr2_4:40776337-40776356 | Msa0328380:CDS | 50.0% | |
| TGAGTTCAGGTCAACGCTAG+TGG | + | chr2_4:40776533-40776552 | Msa0328380:intron | 50.0% | |
| TGTGGAGTAGCCGAGATGAT+TGG | + | chr2_4:40776563-40776582 | Msa0328380:CDS | 50.0% | |
| CTCTTGCATGACCTTCTGAC+GGG | - | chr2_4:40776959-40776978 | None:intergenic | 50.0% | |
| GACGAATAGGGAACCATGGG+AGG | - | chr2_4:40774305-40774324 | None:intergenic | 55.0% | |
| TCGACACCAGGTGTGTTCAC+AGG | - | chr2_4:40775303-40775322 | None:intergenic | 55.0% | |
| GCGACGGGAAAAGAACCCTT+TGG | - | chr2_4:40775942-40775961 | None:intergenic | 55.0% | |
| AGCCGAGATGATTGGACGAG+TGG | + | chr2_4:40776571-40776590 | Msa0328380:CDS | 55.0% | |
| CCATGGGAGGGAAGCTAACC+TGG | - | chr2_4:40774292-40774311 | None:intergenic | 60.0% | |
| !! | CCAGGTTAGCTTCCCTCCCA+TGG | + | chr2_4:40774289-40774308 | Msa0328380:intron | 60.0% |
| ! | TCGCAGAGTCGTACTGGCAG+TGG | + | chr2_4:40775516-40775535 | Msa0328380:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 40773249 | 40777782 | 40773249 | ID=Msa0328380;Name=Msa0328380 |
| chr2_4 | mRNA | 40773249 | 40777782 | 40773249 | ID=Msa0328380-mRNA-1;Parent=Msa0328380;Name=Msa0328380-mRNA-1;_AED=0.03;_eAED=0.03;_QI=479|1|0.88|1|1|1|9|0|594 |
| chr2_4 | exon | 40773249 | 40773749 | 40773249 | ID=Msa0328380-mRNA-1:exon:12445;Parent=Msa0328380-mRNA-1 |
| chr2_4 | exon | 40773880 | 40773950 | 40773880 | ID=Msa0328380-mRNA-1:exon:12446;Parent=Msa0328380-mRNA-1 |
| chr2_4 | exon | 40774124 | 40774292 | 40774124 | ID=Msa0328380-mRNA-1:exon:12447;Parent=Msa0328380-mRNA-1 |
| chr2_4 | exon | 40774557 | 40774633 | 40774557 | ID=Msa0328380-mRNA-1:exon:12448;Parent=Msa0328380-mRNA-1 |
| chr2_4 | exon | 40775228 | 40775662 | 40775228 | ID=Msa0328380-mRNA-1:exon:12449;Parent=Msa0328380-mRNA-1 |
| chr2_4 | exon | 40775900 | 40776418 | 40775900 | ID=Msa0328380-mRNA-1:exon:12450;Parent=Msa0328380-mRNA-1 |
| chr2_4 | exon | 40776542 | 40776754 | 40776542 | ID=Msa0328380-mRNA-1:exon:12451;Parent=Msa0328380-mRNA-1 |
| chr2_4 | exon | 40776865 | 40777017 | 40776865 | ID=Msa0328380-mRNA-1:exon:12452;Parent=Msa0328380-mRNA-1 |
| chr2_4 | exon | 40777657 | 40777782 | 40777657 | ID=Msa0328380-mRNA-1:exon:12453;Parent=Msa0328380-mRNA-1 |
| chr2_4 | five_prime_UTR | 40773249 | 40773727 | 40773249 | ID=Msa0328380-mRNA-1:five_prime_utr;Parent=Msa0328380-mRNA-1 |
| chr2_4 | CDS | 40773728 | 40773749 | 40773728 | ID=Msa0328380-mRNA-1:cds;Parent=Msa0328380-mRNA-1 |
| chr2_4 | CDS | 40773880 | 40773950 | 40773880 | ID=Msa0328380-mRNA-1:cds;Parent=Msa0328380-mRNA-1 |
| chr2_4 | CDS | 40774124 | 40774292 | 40774124 | ID=Msa0328380-mRNA-1:cds;Parent=Msa0328380-mRNA-1 |
| chr2_4 | CDS | 40774557 | 40774633 | 40774557 | ID=Msa0328380-mRNA-1:cds;Parent=Msa0328380-mRNA-1 |
| chr2_4 | CDS | 40775228 | 40775662 | 40775228 | ID=Msa0328380-mRNA-1:cds;Parent=Msa0328380-mRNA-1 |
| chr2_4 | CDS | 40775900 | 40776418 | 40775900 | ID=Msa0328380-mRNA-1:cds;Parent=Msa0328380-mRNA-1 |
| chr2_4 | CDS | 40776542 | 40776754 | 40776542 | ID=Msa0328380-mRNA-1:cds;Parent=Msa0328380-mRNA-1 |
| chr2_4 | CDS | 40776865 | 40777017 | 40776865 | ID=Msa0328380-mRNA-1:cds;Parent=Msa0328380-mRNA-1 |
| chr2_4 | CDS | 40777657 | 40777782 | 40777657 | ID=Msa0328380-mRNA-1:cds;Parent=Msa0328380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
