Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265420 | ABN08392.1 | 98.701 | 154 | 0 | 1 | 1 | 152 | 1 | 154 | 4.59e-102 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265420 | sp|Q9S746|HTH_ARATH | 68.702 | 131 | 39 | 1 | 26 | 154 | 26 | 156 | 1.51e-47 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265420 | A2Q442 | 98.701 | 154 | 0 | 1 | 1 | 152 | 1 | 154 | 2.19e-102 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019600 | Msa0265420 | 0.801492 | 8.777122e-49 | -8.615850e-47 |
| Msa0265420 | Msa0406000 | 0.800629 | 1.317935e-48 | -8.615850e-47 |
| Msa0265420 | Msa0424350 | 0.801287 | 9.669255e-49 | -8.615850e-47 |
| Msa0265420 | Msa0451400 | 0.809941 | 1.475007e-50 | -8.615850e-47 |
| Msa0265420 | Msa0492190 | 0.801061 | 1.075506e-48 | -8.615850e-47 |
| Msa0265420 | Msa0591790 | 0.804127 | 2.507193e-49 | -8.615850e-47 |
| Msa0265420 | Msa0669840 | 0.805671 | 1.192805e-49 | -8.615850e-47 |
| Msa0265420 | Msa0751890 | 0.806489 | 8.025584e-50 | -8.615850e-47 |
| Msa0265420 | Msa0916640 | 0.802667 | 5.032032e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265420 | MtrunA17_Chr2g0330251 | 98.077 | 156 | 1 | 1 | 1 | 154 | 1 | 156 | 3.53e-104 | 309 |
| Msa0265420 | MtrunA17_Chr8g0342061 | 78.710 | 155 | 25 | 3 | 1 | 154 | 1 | 148 | 5.35e-71 | 223 |
| Msa0265420 | MtrunA17_Chr5g0398131 | 69.149 | 94 | 29 | 0 | 61 | 154 | 13 | 106 | 8.11e-43 | 137 |
| Msa0265420 | MtrunA17_Chr5g0398121 | 60.976 | 123 | 39 | 2 | 32 | 154 | 28 | 141 | 3.99e-41 | 144 |
| Msa0265420 | MtrunA17_Chr1g0203951 | 57.143 | 119 | 38 | 3 | 36 | 154 | 7 | 112 | 1.85e-37 | 125 |
| Msa0265420 | MtrunA17_Chr1g0203971 | 57.627 | 118 | 41 | 2 | 37 | 154 | 2 | 110 | 3.38e-36 | 130 |
| Msa0265420 | MtrunA17_Chr4g0000491 | 56.311 | 103 | 39 | 1 | 58 | 154 | 51 | 153 | 1.37e-28 | 105 |
| Msa0265420 | MtrunA17_Chr5g0417511 | 57.143 | 98 | 36 | 2 | 61 | 154 | 54 | 149 | 3.30e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0265420 | AT1G72970.2 | 68.702 | 131 | 39 | 1 | 26 | 154 | 26 | 156 | 1.30e-48 | 164 |
| Msa0265420 | AT1G72970.1 | 68.702 | 131 | 39 | 1 | 26 | 154 | 26 | 156 | 1.53e-48 | 165 |
| Msa0265420 | AT1G12570.1 | 53.691 | 149 | 54 | 4 | 8 | 154 | 4 | 139 | 1.87e-39 | 140 |
| Msa0265420 | AT5G51950.2 | 64.894 | 94 | 33 | 0 | 61 | 154 | 13 | 106 | 2.51e-36 | 131 |
| Msa0265420 | AT5G51950.3 | 64.894 | 94 | 33 | 0 | 61 | 154 | 46 | 139 | 3.96e-36 | 131 |
| Msa0265420 | AT5G51950.1 | 64.894 | 94 | 33 | 0 | 61 | 154 | 46 | 139 | 4.18e-36 | 131 |
| Msa0265420 | AT1G73050.1 | 58.974 | 117 | 38 | 2 | 39 | 154 | 41 | 148 | 1.10e-34 | 127 |
| Msa0265420 | AT3G56060.1 | 63.830 | 94 | 34 | 0 | 61 | 154 | 46 | 139 | 4.07e-34 | 125 |
| Msa0265420 | AT5G51930.2 | 60.825 | 97 | 38 | 0 | 58 | 154 | 23 | 119 | 5.73e-32 | 119 |
| Msa0265420 | AT5G51930.1 | 51.724 | 116 | 54 | 1 | 39 | 154 | 53 | 166 | 1.07e-31 | 119 |
| Msa0265420 | AT1G14190.2 | 45.238 | 126 | 59 | 2 | 30 | 154 | 15 | 131 | 4.80e-27 | 105 |
| Msa0265420 | AT1G14185.1 | 44.444 | 126 | 60 | 3 | 30 | 154 | 15 | 131 | 6.23e-27 | 105 |
| Msa0265420 | AT1G14190.1 | 53.684 | 95 | 43 | 1 | 61 | 154 | 16 | 110 | 1.10e-26 | 104 |
Find 41 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTGTCTCCTTATGATA+TGG | 0.237196 | 2_2:+65717966 | Msa0265420:CDS |
| CAATGCAAGAGCAAGGGTTT+TGG | 0.248852 | 2_2:+65718854 | Msa0265420:CDS |
| AGTGTAGAAGCCAGCATTGA+TGG | 0.347629 | 2_2:-65718889 | None:intergenic |
| AACCTCTAAGTGGCTTCCTT+TGG | 0.365457 | 2_2:-65717858 | None:intergenic |
| TTGTCTAGAAATGACACATT+GGG | 0.404667 | 2_2:-65718759 | None:intergenic |
| AGGTTGCAAATCAGCTTCTT+CGG | 0.429000 | 2_2:+65717876 | Msa0265420:five_prime_UTR |
| GTGAGAGGGTTGCAGCTAAA+GGG | 0.437545 | 2_2:-65718686 | None:intergenic |
| TCAACCACCAACACAAATGA+TGG | 0.441542 | 2_2:+65718624 | Msa0265420:CDS |
| CAGTTCTTCTTGTCAACAGA+TGG | 0.446773 | 2_2:+65718825 | Msa0265420:CDS |
| ATAGTAGGTGGTGGAACAGC+AGG | 0.446887 | 2_2:+65718660 | Msa0265420:CDS |
| GTGTTGGTGGTTGAAATTGA+TGG | 0.447390 | 2_2:-65718615 | None:intergenic |
| TGTGAGAGGGTTGCAGCTAA+AGG | 0.455120 | 2_2:-65718687 | None:intergenic |
| AGACAACTTTCACATTACTT+TGG | 0.462010 | 2_2:+65718776 | Msa0265420:CDS |
| AACCAAAGGAAGCCACTTAG+AGG | 0.467839 | 2_2:+65717856 | Msa0265420:five_prime_UTR |
| TCTAAGTGGCTTCCTTTGGT+TGG | 0.480768 | 2_2:-65717854 | None:intergenic |
| TACCCACCAATGGCAACTCT+TGG | 0.501174 | 2_2:+65717929 | Msa0265420:exon |
| GGTGGTAGCTCCATCAATGC+TGG | 0.506443 | 2_2:+65718879 | Msa0265420:CDS |
| GGTTATGACTACATAATAGT+AGG | 0.510054 | 2_2:+65718645 | Msa0265420:CDS |
| AGTTGATGAGCCATATCATA+AGG | 0.512437 | 2_2:-65717976 | None:intergenic |
| ATAACCATCATTTGTGTTGG+TGG | 0.513715 | 2_2:-65718628 | None:intergenic |
| GGTAAACAAAACTTGAACAA+TGG | 0.527265 | 2_2:+65718546 | Msa0265420:intron |
| GACACATTGGGGTTTGTGAA+AGG | 0.538820 | 2_2:-65718747 | None:intergenic |
| GCTGATTTGCAACCTCTAAG+TGG | 0.538993 | 2_2:-65717868 | None:intergenic |
| GTCATAACCATCATTTGTGT+TGG | 0.542012 | 2_2:-65718631 | None:intergenic |
| AACTTTCTACCTCTATGCCA+AGG | 0.552991 | 2_2:+65717995 | Msa0265420:CDS |
| GTTGTCTAGAAATGACACAT+TGG | 0.554009 | 2_2:-65718760 | None:intergenic |
| ACAGCACCAAGAGTTGCCAT+TGG | 0.562132 | 2_2:-65717935 | None:intergenic |
| GCACCAAGAGTTGCCATTGG+TGG | 0.563394 | 2_2:-65717932 | None:intergenic |
| AAGAACTGTGAAGCTGAAGT+TGG | 0.578301 | 2_2:-65718810 | None:intergenic |
| CACAAAACAAGACCAACCAA+AGG | 0.579371 | 2_2:+65717842 | Msa0265420:five_prime_UTR |
| GAGTGTTCAATGCAAGAGCA+AGG | 0.585709 | 2_2:+65718847 | Msa0265420:CDS |
| CACCAAGAGTTGCCATTGGT+GGG | 0.592647 | 2_2:-65717931 | None:intergenic |
| GACTACATAATAGTAGGTGG+TGG | 0.599865 | 2_2:+65718651 | Msa0265420:CDS |
| TTGGTGGTTGAAATTGATGG+TGG | 0.617956 | 2_2:-65718612 | None:intergenic |
| TGTCTAGAAATGACACATTG+GGG | 0.623481 | 2_2:-65718758 | None:intergenic |
| AGTGTTCAATGCAAGAGCAA+GGG | 0.630159 | 2_2:+65718848 | Msa0265420:CDS |
| ATATCATAAGGAGACAGAGA+AGG | 0.647936 | 2_2:-65717964 | None:intergenic |
| TCTACACTAGAGCAAGCTCA+AGG | 0.648240 | 2_2:+65718904 | Msa0265420:CDS |
| TGTCACTGTATACCCACCAA+TGG | 0.656491 | 2_2:+65717919 | Msa0265420:exon |
| TATGACTACATAATAGTAGG+TGG | 0.663102 | 2_2:+65718648 | Msa0265420:CDS |
| TAGTAGGTGGTGGAACAGCA+GGG | 0.663123 | 2_2:+65718661 | Msa0265420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAATTCATTATTAATAA+CGG | + | chr2_2:65718355-65718374 | Msa0265420:intron | 10.0% |
| !! | AGAAAATTCATTATTAATAA+CGG | + | chr2_2:65718355-65718374 | Msa0265420:intron | 10.0% |
| !! | ATACATCAAATATAGTTAGA+GGG | - | chr2_2:65718030-65718049 | None:intergenic | 20.0% |
| !! | AATACATCAAATATAGTTAG+AGG | - | chr2_2:65718031-65718050 | None:intergenic | 20.0% |
| !!! | TTCCTTTTTTTTGTTTGTTT+AGG | + | chr2_2:65718451-65718470 | Msa0265420:intron | 20.0% |
| !! | TACCTAAACAAACAAAAAAA+AGG | - | chr2_2:65718456-65718475 | None:intergenic | 20.0% |
| !! | ATACATCAAATATAGTTAGA+GGG | - | chr2_2:65718030-65718049 | None:intergenic | 20.0% |
| !! | AATACATCAAATATAGTTAG+AGG | - | chr2_2:65718031-65718050 | None:intergenic | 20.0% |
| !!! | TTCCTTTTTTTTGTTTGTTT+AGG | + | chr2_2:65718451-65718470 | Msa0265420:intron | 20.0% |
| !! | TACCTAAACAAACAAAAAAA+AGG | - | chr2_2:65718456-65718475 | None:intergenic | 20.0% |
| ! | ATGTGTATGTCAACTAAAAA+AGG | + | chr2_2:65718290-65718309 | Msa0265420:intron | 25.0% |
| !!! | AACTTGCTTTTCTTATGAAA+GGG | - | chr2_2:65718581-65718600 | None:intergenic | 25.0% |
| ! | ATGTGTATGTCAACTAAAAA+AGG | + | chr2_2:65718290-65718309 | Msa0265420:intron | 25.0% |
| !!! | AACTTGCTTTTCTTATGAAA+GGG | - | chr2_2:65718581-65718600 | None:intergenic | 25.0% |
| ATCCATGTCTCACATTATTA+AGG | + | chr2_2:65718055-65718074 | Msa0265420:intron | 30.0% | |
| AACCTTAATAATGTGAGACA+TGG | - | chr2_2:65718060-65718079 | None:intergenic | 30.0% | |
| AAAACCTACTTCAAAGAACA+AGG | - | chr2_2:65718113-65718132 | None:intergenic | 30.0% | |
| !!! | TTGTTCTTTGAAGTAGGTTT+TGG | + | chr2_2:65718112-65718131 | Msa0265420:intron | 30.0% |
| ATACATGTGACACAAATCTT+TGG | + | chr2_2:65718149-65718168 | Msa0265420:intron | 30.0% | |
| ! | TTTTCATGTTGTTCTTGAAG+TGG | - | chr2_2:65718179-65718198 | None:intergenic | 30.0% |
| GACATACACATATCATCATA+TGG | - | chr2_2:65718281-65718300 | None:intergenic | 30.0% | |
| !!! | TTTTGTTGTTCTCTAACTCT+AGG | + | chr2_2:65718482-65718501 | Msa0265420:intron | 30.0% |
| !! | TTTGTTGTTCTCTAACTCTA+GGG | + | chr2_2:65718483-65718502 | Msa0265420:intron | 30.0% |
| TAACTACAAGATTTGATTGC+AGG | + | chr2_2:65718525-65718544 | Msa0265420:intron | 30.0% | |
| GGTAAACAAAACTTGAACAA+TGG | + | chr2_2:65718546-65718565 | Msa0265420:intron | 30.0% | |
| !! | GAACTTGCTTTTCTTATGAA+AGG | - | chr2_2:65718582-65718601 | None:intergenic | 30.0% |
| GGTTATGACTACATAATAGT+AGG | + | chr2_2:65718645-65718664 | Msa0265420:CDS | 30.0% | |
| TATGACTACATAATAGTAGG+TGG | + | chr2_2:65718648-65718667 | Msa0265420:CDS | 30.0% | |
| !! | AACATTGAAGTTTTGTGAGA+GGG | - | chr2_2:65718703-65718722 | None:intergenic | 30.0% |
| !! | AAACATTGAAGTTTTGTGAG+AGG | - | chr2_2:65718704-65718723 | None:intergenic | 30.0% |
| !! | AATGTTTTGTTGCTTGAAAG+AGG | + | chr2_2:65718717-65718736 | Msa0265420:CDS | 30.0% |
| TTGTCTAGAAATGACACATT+GGG | - | chr2_2:65718762-65718781 | None:intergenic | 30.0% | |
| AGACAACTTTCACATTACTT+TGG | + | chr2_2:65718776-65718795 | Msa0265420:CDS | 30.0% | |
| ATCCATGTCTCACATTATTA+AGG | + | chr2_2:65718055-65718074 | Msa0265420:intron | 30.0% | |
| AACCTTAATAATGTGAGACA+TGG | - | chr2_2:65718060-65718079 | None:intergenic | 30.0% | |
| AAAACCTACTTCAAAGAACA+AGG | - | chr2_2:65718113-65718132 | None:intergenic | 30.0% | |
| !!! | TTGTTCTTTGAAGTAGGTTT+TGG | + | chr2_2:65718112-65718131 | Msa0265420:intron | 30.0% |
| ATACATGTGACACAAATCTT+TGG | + | chr2_2:65718149-65718168 | Msa0265420:intron | 30.0% | |
| ! | TTTTCATGTTGTTCTTGAAG+TGG | - | chr2_2:65718179-65718198 | None:intergenic | 30.0% |
| GACATACACATATCATCATA+TGG | - | chr2_2:65718281-65718300 | None:intergenic | 30.0% | |
| !!! | TTTTGTTGTTCTCTAACTCT+AGG | + | chr2_2:65718482-65718501 | Msa0265420:intron | 30.0% |
| !! | TTTGTTGTTCTCTAACTCTA+GGG | + | chr2_2:65718483-65718502 | Msa0265420:intron | 30.0% |
| TAACTACAAGATTTGATTGC+AGG | + | chr2_2:65718525-65718544 | Msa0265420:intron | 30.0% | |
| GGTAAACAAAACTTGAACAA+TGG | + | chr2_2:65718546-65718565 | Msa0265420:intron | 30.0% | |
| !! | GAACTTGCTTTTCTTATGAA+AGG | - | chr2_2:65718582-65718601 | None:intergenic | 30.0% |
| GGTTATGACTACATAATAGT+AGG | + | chr2_2:65718645-65718664 | Msa0265420:CDS | 30.0% | |
| TATGACTACATAATAGTAGG+TGG | + | chr2_2:65718648-65718667 | Msa0265420:CDS | 30.0% | |
| !! | AACATTGAAGTTTTGTGAGA+GGG | - | chr2_2:65718703-65718722 | None:intergenic | 30.0% |
| !! | AAACATTGAAGTTTTGTGAG+AGG | - | chr2_2:65718704-65718723 | None:intergenic | 30.0% |
| !! | AATGTTTTGTTGCTTGAAAG+AGG | + | chr2_2:65718717-65718736 | Msa0265420:CDS | 30.0% |
| TTGTCTAGAAATGACACATT+GGG | - | chr2_2:65718762-65718781 | None:intergenic | 30.0% | |
| AGACAACTTTCACATTACTT+TGG | + | chr2_2:65718776-65718795 | Msa0265420:CDS | 30.0% | |
| ATATCATAAGGAGACAGAGA+AGG | - | chr2_2:65717967-65717986 | None:intergenic | 35.0% | |
| TTCTCTGTCTCCTTATGATA+TGG | + | chr2_2:65717966-65717985 | Msa0265420:CDS | 35.0% | |
| !! | AGTTGATGAGCCATATCATA+AGG | - | chr2_2:65717979-65717998 | None:intergenic | 35.0% |
| CATCAAATATAGTTAGAGGG+AGG | - | chr2_2:65718027-65718046 | None:intergenic | 35.0% | |
| !! | AGATCCTTGTTCTTTGAAGT+AGG | + | chr2_2:65718106-65718125 | Msa0265420:intron | 35.0% |
| ATAACCATCATTTGTGTTGG+TGG | - | chr2_2:65718631-65718650 | None:intergenic | 35.0% | |
| GTCATAACCATCATTTGTGT+TGG | - | chr2_2:65718634-65718653 | None:intergenic | 35.0% | |
| TGTCTAGAAATGACACATTG+GGG | - | chr2_2:65718761-65718780 | None:intergenic | 35.0% | |
| GTTGTCTAGAAATGACACAT+TGG | - | chr2_2:65718763-65718782 | None:intergenic | 35.0% | |
| ATATCATAAGGAGACAGAGA+AGG | - | chr2_2:65717967-65717986 | None:intergenic | 35.0% | |
| TTCTCTGTCTCCTTATGATA+TGG | + | chr2_2:65717966-65717985 | Msa0265420:CDS | 35.0% | |
| !! | AGTTGATGAGCCATATCATA+AGG | - | chr2_2:65717979-65717998 | None:intergenic | 35.0% |
| CATCAAATATAGTTAGAGGG+AGG | - | chr2_2:65718027-65718046 | None:intergenic | 35.0% | |
| !! | AGATCCTTGTTCTTTGAAGT+AGG | + | chr2_2:65718106-65718125 | Msa0265420:intron | 35.0% |
| ATAACCATCATTTGTGTTGG+TGG | - | chr2_2:65718631-65718650 | None:intergenic | 35.0% | |
| GTCATAACCATCATTTGTGT+TGG | - | chr2_2:65718634-65718653 | None:intergenic | 35.0% | |
| TGTCTAGAAATGACACATTG+GGG | - | chr2_2:65718761-65718780 | None:intergenic | 35.0% | |
| GTTGTCTAGAAATGACACAT+TGG | - | chr2_2:65718763-65718782 | None:intergenic | 35.0% | |
| CACAAAACAAGACCAACCAA+AGG | + | chr2_2:65717842-65717861 | Msa0265420:five_prime_UTR | 40.0% | |
| AGGTTGCAAATCAGCTTCTT+CGG | + | chr2_2:65717876-65717895 | Msa0265420:five_prime_UTR | 40.0% | |
| AACTTTCTACCTCTATGCCA+AGG | + | chr2_2:65717995-65718014 | Msa0265420:CDS | 40.0% | |
| AGGAAAAAACCTTGGCATAG+AGG | - | chr2_2:65718007-65718026 | None:intergenic | 40.0% | |
| TTAGAGGGAGGAAAAAACCT+TGG | - | chr2_2:65718015-65718034 | None:intergenic | 40.0% | |
| ! | TTGGTGGTTGAAATTGATGG+TGG | - | chr2_2:65718615-65718634 | None:intergenic | 40.0% |
| !! | GTGTTGGTGGTTGAAATTGA+TGG | - | chr2_2:65718618-65718637 | None:intergenic | 40.0% |
| TCAACCACCAACACAAATGA+TGG | + | chr2_2:65718624-65718643 | Msa0265420:CDS | 40.0% | |
| GACTACATAATAGTAGGTGG+TGG | + | chr2_2:65718651-65718670 | Msa0265420:CDS | 40.0% | |
| !! | GTTTTGTTGCTTGAAAGAGG+AGG | + | chr2_2:65718720-65718739 | Msa0265420:CDS | 40.0% |
| AAGAACTGTGAAGCTGAAGT+TGG | - | chr2_2:65718813-65718832 | None:intergenic | 40.0% | |
| CAGTTCTTCTTGTCAACAGA+TGG | + | chr2_2:65718825-65718844 | Msa0265420:CDS | 40.0% | |
| AGTGTTCAATGCAAGAGCAA+GGG | + | chr2_2:65718848-65718867 | Msa0265420:CDS | 40.0% | |
| ! | AATGCAAGAGCAAGGGTTTT+GGG | + | chr2_2:65718855-65718874 | Msa0265420:CDS | 40.0% |
| CACAAAACAAGACCAACCAA+AGG | + | chr2_2:65717842-65717861 | Msa0265420:five_prime_UTR | 40.0% | |
| AGGTTGCAAATCAGCTTCTT+CGG | + | chr2_2:65717876-65717895 | Msa0265420:five_prime_UTR | 40.0% | |
| AACTTTCTACCTCTATGCCA+AGG | + | chr2_2:65717995-65718014 | Msa0265420:CDS | 40.0% | |
| AGGAAAAAACCTTGGCATAG+AGG | - | chr2_2:65718007-65718026 | None:intergenic | 40.0% | |
| TTAGAGGGAGGAAAAAACCT+TGG | - | chr2_2:65718015-65718034 | None:intergenic | 40.0% | |
| ! | TTGGTGGTTGAAATTGATGG+TGG | - | chr2_2:65718615-65718634 | None:intergenic | 40.0% |
| !! | GTGTTGGTGGTTGAAATTGA+TGG | - | chr2_2:65718618-65718637 | None:intergenic | 40.0% |
| TCAACCACCAACACAAATGA+TGG | + | chr2_2:65718624-65718643 | Msa0265420:CDS | 40.0% | |
| GACTACATAATAGTAGGTGG+TGG | + | chr2_2:65718651-65718670 | Msa0265420:CDS | 40.0% | |
| !! | GTTTTGTTGCTTGAAAGAGG+AGG | + | chr2_2:65718720-65718739 | Msa0265420:CDS | 40.0% |
| AAGAACTGTGAAGCTGAAGT+TGG | - | chr2_2:65718813-65718832 | None:intergenic | 40.0% | |
| CAGTTCTTCTTGTCAACAGA+TGG | + | chr2_2:65718825-65718844 | Msa0265420:CDS | 40.0% | |
| AGTGTTCAATGCAAGAGCAA+GGG | + | chr2_2:65718848-65718867 | Msa0265420:CDS | 40.0% | |
| ! | AATGCAAGAGCAAGGGTTTT+GGG | + | chr2_2:65718855-65718874 | Msa0265420:CDS | 40.0% |
| TCTAAGTGGCTTCCTTTGGT+TGG | - | chr2_2:65717857-65717876 | None:intergenic | 45.0% | |
| AACCAAAGGAAGCCACTTAG+AGG | + | chr2_2:65717856-65717875 | Msa0265420:five_prime_UTR | 45.0% | |
| AACCTCTAAGTGGCTTCCTT+TGG | - | chr2_2:65717861-65717880 | None:intergenic | 45.0% | |
| !! | GCTGATTTGCAACCTCTAAG+TGG | - | chr2_2:65717871-65717890 | None:intergenic | 45.0% |
| TGTCACTGTATACCCACCAA+TGG | + | chr2_2:65717919-65717938 | Msa0265420:exon | 45.0% | |
| GACACATTGGGGTTTGTGAA+AGG | - | chr2_2:65718750-65718769 | None:intergenic | 45.0% | |
| GAGTGTTCAATGCAAGAGCA+AGG | + | chr2_2:65718847-65718866 | Msa0265420:CDS | 45.0% | |
| ! | CAATGCAAGAGCAAGGGTTT+TGG | + | chr2_2:65718854-65718873 | Msa0265420:CDS | 45.0% |
| ! | AGTGTAGAAGCCAGCATTGA+TGG | - | chr2_2:65718892-65718911 | None:intergenic | 45.0% |
| TCTACACTAGAGCAAGCTCA+AGG | + | chr2_2:65718904-65718923 | Msa0265420:CDS | 45.0% | |
| TCTAAGTGGCTTCCTTTGGT+TGG | - | chr2_2:65717857-65717876 | None:intergenic | 45.0% | |
| AACCAAAGGAAGCCACTTAG+AGG | + | chr2_2:65717856-65717875 | Msa0265420:five_prime_UTR | 45.0% | |
| AACCTCTAAGTGGCTTCCTT+TGG | - | chr2_2:65717861-65717880 | None:intergenic | 45.0% | |
| !! | GCTGATTTGCAACCTCTAAG+TGG | - | chr2_2:65717871-65717890 | None:intergenic | 45.0% |
| TGTCACTGTATACCCACCAA+TGG | + | chr2_2:65717919-65717938 | Msa0265420:exon | 45.0% | |
| GACACATTGGGGTTTGTGAA+AGG | - | chr2_2:65718750-65718769 | None:intergenic | 45.0% | |
| GAGTGTTCAATGCAAGAGCA+AGG | + | chr2_2:65718847-65718866 | Msa0265420:CDS | 45.0% | |
| ! | CAATGCAAGAGCAAGGGTTT+TGG | + | chr2_2:65718854-65718873 | Msa0265420:CDS | 45.0% |
| ! | AGTGTAGAAGCCAGCATTGA+TGG | - | chr2_2:65718892-65718911 | None:intergenic | 45.0% |
| TCTACACTAGAGCAAGCTCA+AGG | + | chr2_2:65718904-65718923 | Msa0265420:CDS | 45.0% | |
| !!! | TTTTTTAAAATAAAAAAATC+AGG | + | chr2_2:65718325-65718344 | Msa0265420:intron | 5.0% |
| !!! | TTTTTTAAAATAAAAAAATC+AGG | + | chr2_2:65718325-65718344 | Msa0265420:intron | 5.0% |
| TACCCACCAATGGCAACTCT+TGG | + | chr2_2:65717929-65717948 | Msa0265420:exon | 50.0% | |
| CACCAAGAGTTGCCATTGGT+GGG | - | chr2_2:65717934-65717953 | None:intergenic | 50.0% | |
| ACAGCACCAAGAGTTGCCAT+TGG | - | chr2_2:65717938-65717957 | None:intergenic | 50.0% | |
| !! | ATAGTAGGTGGTGGAACAGC+AGG | + | chr2_2:65718660-65718679 | Msa0265420:CDS | 50.0% |
| !! | TAGTAGGTGGTGGAACAGCA+GGG | + | chr2_2:65718661-65718680 | Msa0265420:CDS | 50.0% |
| GTGAGAGGGTTGCAGCTAAA+GGG | - | chr2_2:65718689-65718708 | None:intergenic | 50.0% | |
| TGTGAGAGGGTTGCAGCTAA+AGG | - | chr2_2:65718690-65718709 | None:intergenic | 50.0% | |
| TACCCACCAATGGCAACTCT+TGG | + | chr2_2:65717929-65717948 | Msa0265420:exon | 50.0% | |
| CACCAAGAGTTGCCATTGGT+GGG | - | chr2_2:65717934-65717953 | None:intergenic | 50.0% | |
| ACAGCACCAAGAGTTGCCAT+TGG | - | chr2_2:65717938-65717957 | None:intergenic | 50.0% | |
| !! | ATAGTAGGTGGTGGAACAGC+AGG | + | chr2_2:65718660-65718679 | Msa0265420:CDS | 50.0% |
| !! | TAGTAGGTGGTGGAACAGCA+GGG | + | chr2_2:65718661-65718680 | Msa0265420:CDS | 50.0% |
| GTGAGAGGGTTGCAGCTAAA+GGG | - | chr2_2:65718689-65718708 | None:intergenic | 50.0% | |
| TGTGAGAGGGTTGCAGCTAA+AGG | - | chr2_2:65718690-65718709 | None:intergenic | 50.0% | |
| GCACCAAGAGTTGCCATTGG+TGG | - | chr2_2:65717935-65717954 | None:intergenic | 55.0% | |
| !!! | GCAAGAGCAAGGGTTTTGGG+TGG | + | chr2_2:65718858-65718877 | Msa0265420:CDS | 55.0% |
| !!! | AGAGCAAGGGTTTTGGGTGG+TGG | + | chr2_2:65718861-65718880 | Msa0265420:CDS | 55.0% |
| GGTGGTAGCTCCATCAATGC+TGG | + | chr2_2:65718879-65718898 | Msa0265420:CDS | 55.0% | |
| GCACCAAGAGTTGCCATTGG+TGG | - | chr2_2:65717935-65717954 | None:intergenic | 55.0% | |
| !!! | GCAAGAGCAAGGGTTTTGGG+TGG | + | chr2_2:65718858-65718877 | Msa0265420:CDS | 55.0% |
| !!! | AGAGCAAGGGTTTTGGGTGG+TGG | + | chr2_2:65718861-65718880 | Msa0265420:CDS | 55.0% |
| GGTGGTAGCTCCATCAATGC+TGG | + | chr2_2:65718879-65718898 | Msa0265420:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 65717815 | 65718935 | 65717815 | ID=Msa0265420;Name=Msa0265420 |
| chr2_2 | mRNA | 65717815 | 65718935 | 65717815 | ID=Msa0265420-mRNA-1;Parent=Msa0265420;Name=Msa0265420-mRNA-1;_AED=0.02;_eAED=0.02;_QI=123|1|0.5|1|1|1|2|0|155 |
| chr2_2 | exon | 65717815 | 65718016 | 65717815 | ID=Msa0265420-mRNA-1:exon:20717;Parent=Msa0265420-mRNA-1 |
| chr2_2 | exon | 65718547 | 65718935 | 65718547 | ID=Msa0265420-mRNA-1:exon:20718;Parent=Msa0265420-mRNA-1 |
| chr2_2 | five_prime_UTR | 65717815 | 65717937 | 65717815 | ID=Msa0265420-mRNA-1:five_prime_utr;Parent=Msa0265420-mRNA-1 |
| chr2_2 | CDS | 65717938 | 65718016 | 65717938 | ID=Msa0265420-mRNA-1:cds;Parent=Msa0265420-mRNA-1 |
| chr2_2 | CDS | 65718547 | 65718935 | 65718547 | ID=Msa0265420-mRNA-1:cds;Parent=Msa0265420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
