Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0916640 | XP_003602146.1 | 93.716 | 366 | 23 | 0 | 1 | 366 | 1 | 366 | 0.0 | 727 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0916640 | sp|Q84VY3|STAD6_ARATH | 69.209 | 354 | 104 | 2 | 18 | 366 | 38 | 391 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006980 | Msa0916640 | 0.811186 | 7.939667e-51 | -8.615850e-47 |
| Msa0019600 | Msa0916640 | 0.836033 | 1.186161e-56 | -8.615850e-47 |
| Msa0111750 | Msa0916640 | 0.840387 | 8.965116e-58 | -8.615850e-47 |
| Msa0669840 | Msa0916640 | 0.838871 | 2.222301e-57 | -8.615850e-47 |
| Msa0711320 | Msa0916640 | 0.814915 | 1.208100e-51 | -8.615850e-47 |
| Msa0739580 | Msa0916640 | 0.809105 | 2.230044e-50 | -8.615850e-47 |
| Msa0748400 | Msa0916640 | 0.960999 | 3.388391e-119 | -8.615850e-47 |
| Msa0751890 | Msa0916640 | 0.883936 | 2.939950e-71 | -8.615850e-47 |
| Msa0752840 | Msa0916640 | 0.856014 | 4.282335e-62 | -8.615850e-47 |
| Msa0831940 | Msa0916640 | 0.847730 | 9.614549e-60 | -8.615850e-47 |
| Msa0124130 | Msa0916640 | 0.820832 | 5.567870e-53 | -8.615850e-47 |
| Msa0141120 | Msa0916640 | 0.816386 | 5.679368e-52 | -8.615850e-47 |
| Msa0149140 | Msa0916640 | 0.824177 | 9.296530e-54 | -8.615850e-47 |
| Msa0212080 | Msa0916640 | 0.800027 | 1.746896e-48 | -8.615850e-47 |
| Msa0215640 | Msa0916640 | 0.815090 | 1.104937e-51 | -8.615850e-47 |
| Msa0406000 | Msa0916640 | 0.854686 | 1.043077e-61 | -8.615850e-47 |
| Msa0424330 | Msa0916640 | 0.806531 | 7.862188e-50 | -8.615850e-47 |
| Msa0424340 | Msa0916640 | 0.826659 | 2.402827e-54 | -8.615850e-47 |
| Msa0424350 | Msa0916640 | 0.842664 | 2.252224e-58 | -8.615850e-47 |
| Msa0451400 | Msa0916640 | 0.853376 | 2.489247e-61 | -8.615850e-47 |
| Msa0265420 | Msa0916640 | 0.802667 | 5.032032e-49 | -8.615850e-47 |
| Msa0333700 | Msa0916640 | 0.814791 | 1.286913e-51 | -8.615850e-47 |
| Msa0343660 | Msa0916640 | 0.843387 | 1.445506e-58 | -8.615850e-47 |
| Msa0359250 | Msa0916640 | 0.848928 | 4.482464e-60 | -8.615850e-47 |
| Msa0492190 | Msa0916640 | 0.838882 | 2.207588e-57 | -8.615850e-47 |
| Msa0515950 | Msa0916640 | 0.831973 | 1.232316e-55 | -8.615850e-47 |
| Msa0534930 | Msa0916640 | 0.806518 | 7.912412e-50 | -8.615850e-47 |
| Msa0591790 | Msa0916640 | 0.800238 | 1.582546e-48 | -8.615850e-47 |
| Msa0594090 | Msa0916640 | 0.806361 | 8.540716e-50 | -8.615850e-47 |
| Msa0867350 | Msa0916640 | 0.809834 | 1.555456e-50 | -8.615850e-47 |
| Msa0898730 | Msa0916640 | 0.813797 | 2.133796e-51 | -8.615850e-47 |
| Msa0916640 | Msa0922750 | 0.810662 | 1.031160e-50 | -8.615850e-47 |
| Msa0916640 | Msa0953540 | 0.966160 | 1.497744e-125 | -8.615850e-47 |
| Msa0916640 | Msa0961560 | 0.805923 | 1.056058e-49 | -8.615850e-47 |
| Msa0916640 | Msa0996270 | 0.801211 | 1.002217e-48 | -8.615850e-47 |
| Msa0916640 | Msa1037890 | 0.805605 | 1.231414e-49 | -8.615850e-47 |
| Msa0916640 | Msa1084520 | 0.825409 | 4.761075e-54 | -8.615850e-47 |
| Msa0916640 | Msa1125810 | 0.808702 | 2.720515e-50 | -8.615850e-47 |
| Msa0916640 | Msa1171310 | 0.840390 | 8.949192e-58 | -8.615850e-47 |
| Msa0916640 | Msa1201160 | 0.823156 | 1.612091e-53 | -8.615850e-47 |
| Msa0916640 | Msa1294290 | 0.801938 | 7.108538e-49 | -8.615850e-47 |
| Msa0916640 | Msa1305510 | 0.807289 | 5.436206e-50 | -8.615850e-47 |
| Msa0916640 | Msa1369040 | 0.835952 | 1.243213e-56 | -8.615850e-47 |
| Msa0916640 | Msa1378870 | 0.837345 | 5.490419e-57 | -8.615850e-47 |
| Msa0916640 | Msa1406780 | 0.815237 | 1.024795e-51 | -8.615850e-47 |
| Msa0916640 | Msa1421550 | 0.805347 | 1.394733e-49 | -8.615850e-47 |
| Msa0916640 | Msa1431850 | 0.815352 | 9.660375e-52 | -8.615850e-47 |
| Msa0916640 | Msa1455320 | 0.813871 | 2.055557e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0916640 | MtrunA17_Chr3g0126011 | 93.716 | 366 | 23 | 0 | 1 | 366 | 1 | 366 | 0.0 | 727 |
| Msa0916640 | MtrunA17_Chr3g0125991 | 90.710 | 366 | 34 | 0 | 1 | 366 | 1 | 366 | 0.0 | 701 |
| Msa0916640 | MtrunA17_Chr3g0125781 | 79.508 | 366 | 71 | 1 | 5 | 366 | 4 | 369 | 0.0 | 608 |
| Msa0916640 | MtrunA17_Chr3g0125981 | 75.749 | 367 | 84 | 1 | 3 | 364 | 2 | 368 | 0.0 | 585 |
| Msa0916640 | MtrunA17_Chr1g0159321 | 75.439 | 342 | 81 | 1 | 26 | 364 | 47 | 388 | 0.0 | 552 |
| Msa0916640 | MtrunA17_Chr4g0045661 | 65.517 | 348 | 112 | 3 | 23 | 364 | 46 | 391 | 2.91e-171 | 482 |
| Msa0916640 | MtrunA17_Chr5g0406961 | 65.517 | 348 | 112 | 3 | 23 | 364 | 97 | 442 | 5.79e-171 | 484 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0916640 | AT1G43800.1 | 69.209 | 354 | 104 | 2 | 18 | 366 | 38 | 391 | 0.0 | 520 |
| Msa0916640 | AT3G02630.1 | 65.385 | 338 | 113 | 2 | 29 | 364 | 59 | 394 | 1.42e-167 | 473 |
| Msa0916640 | AT5G16240.1 | 63.037 | 349 | 120 | 3 | 23 | 364 | 46 | 392 | 2.01e-165 | 468 |
| Msa0916640 | AT3G02610.1 | 59.409 | 372 | 131 | 5 | 14 | 366 | 41 | 411 | 7.06e-162 | 459 |
| Msa0916640 | AT3G02610.2 | 59.409 | 372 | 131 | 5 | 14 | 366 | 43 | 413 | 8.53e-162 | 459 |
| Msa0916640 | AT2G43710.1 | 63.127 | 339 | 122 | 2 | 29 | 366 | 65 | 401 | 1.71e-161 | 458 |
| Msa0916640 | AT2G43710.2 | 63.127 | 339 | 122 | 2 | 29 | 366 | 65 | 401 | 1.77e-161 | 458 |
| Msa0916640 | AT3G02620.2 | 59.341 | 364 | 136 | 4 | 14 | 366 | 44 | 406 | 2.86e-161 | 458 |
| Msa0916640 | AT3G02620.1 | 59.341 | 364 | 136 | 4 | 14 | 366 | 41 | 403 | 2.88e-161 | 458 |
| Msa0916640 | AT5G16230.1 | 61.696 | 342 | 126 | 3 | 29 | 366 | 61 | 401 | 7.27e-160 | 454 |
| Msa0916640 | AT5G16230.2 | 61.656 | 326 | 120 | 3 | 45 | 366 | 1 | 325 | 1.07e-153 | 436 |
| Msa0916640 | AT3G02620.3 | 61.280 | 328 | 120 | 3 | 45 | 366 | 1 | 327 | 7.63e-152 | 431 |
Find 91 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGATTATCTTGTGGTTT+TGG | 0.263671 | 6_2:+38585776 | Msa0916640:CDS |
| AATCTTGCGATGCATCATTT+TGG | 0.286538 | 6_2:-38586912 | None:intergenic |
| GAGACATTGAGTGTGTCTTT+TGG | 0.299881 | 6_2:-38585575 | None:intergenic |
| CCAACTTGTTTATCCATGTT+TGG | 0.336928 | 6_2:-38585836 | None:intergenic |
| GTCTCACACCATGGGCTATA+TGG | 0.350432 | 6_2:+38585886 | Msa0916640:CDS |
| CTCTCAGGGCCTGCACTTGA+TGG | 0.353548 | 6_2:-38585734 | None:intergenic |
| TGCACCTAGATTAAGAAAAC+TGG | 0.364017 | 6_2:+38587135 | Msa0916640:CDS |
| GGGCTATATGGTCACGCTCT+TGG | 0.370720 | 6_2:+38585898 | Msa0916640:CDS |
| TGCCAGCTCCAATCAAATAT+TGG | 0.374430 | 6_2:-38586010 | None:intergenic |
| TGTTCAAATCACTAGAGAAA+TGG | 0.378630 | 6_2:+38585613 | Msa0916640:CDS |
| CTTGATTAGACGATGGAGAT+TGG | 0.392791 | 6_2:+38587054 | Msa0916640:CDS |
| GTTCAAATCACTAGAGAAAT+GGG | 0.399384 | 6_2:+38585614 | Msa0916640:CDS |
| AAGACTATCCAATATTTGAT+TGG | 0.400329 | 6_2:+38586002 | Msa0916640:CDS |
| GCTCAGCCGTTCGATCTCTC+AGG | 0.408301 | 6_2:-38585749 | None:intergenic |
| GGCTGCCAGCATTCCTCCAC+AGG | 0.422913 | 6_2:-38585666 | None:intergenic |
| GTGTACACAAAACCCATGTA+TGG | 0.438769 | 6_2:-38586698 | None:intergenic |
| AGATCAATCACAAATTCTCT+TGG | 0.444851 | 6_2:+38587185 | Msa0916640:CDS |
| GATGGAGTTGGCGACGAGAC+TGG | 0.447459 | 6_2:+38585858 | Msa0916640:CDS |
| TGGAGATTGGAGAAGATTGA+GGG | 0.448075 | 6_2:+38587067 | Msa0916640:CDS |
| TCTGCAGTGGCACAACGTAT+TGG | 0.460018 | 6_2:+38586992 | Msa0916640:CDS |
| ATCCAATATTTGATTGGAGC+TGG | 0.463614 | 6_2:+38586008 | Msa0916640:CDS |
| AAACTGGAAGAGCGTCTTGA+TGG | 0.465202 | 6_2:+38587151 | Msa0916640:CDS |
| TACCGAAAACAACCCATACA+TGG | 0.467155 | 6_2:+38586685 | Msa0916640:CDS |
| AGTTGATCCCACCGAGGCTA+TGG | 0.482931 | 6_2:+38586880 | Msa0916640:CDS |
| ATGGAGATTGGAGAAGATTG+AGG | 0.484391 | 6_2:+38587066 | Msa0916640:CDS |
| GGCTATGGCCACCATAGCCT+CGG | 0.489653 | 6_2:-38586891 | None:intergenic |
| TTCACAAAGTGTGTTGCCAT+TGG | 0.492726 | 6_2:+38585638 | Msa0916640:CDS |
| AAAACCACAAGATAATCATC+TGG | 0.498146 | 6_2:-38585774 | None:intergenic |
| TTTATCCATGTTTGGTACGT+AGG | 0.501588 | 6_2:-38585828 | None:intergenic |
| TCTCTTTAGCCAACCTACCT+AGG | 0.503420 | 6_2:-38586760 | None:intergenic |
| CTCTCACTTGCACGCATATG+CGG | 0.504929 | 6_2:+38586791 | Msa0916640:CDS |
| GTACGTAGGCAATGCTTCCT+CGG | 0.510676 | 6_2:-38585814 | None:intergenic |
| ATTAGACGAAAGTGGGCTCA+TGG | 0.514548 | 6_2:-38587351 | None:intergenic |
| GAGAGCAATTAGACGAAAGT+GGG | 0.519569 | 6_2:-38587358 | None:intergenic |
| TCGGAAGGTAGTGATGAGTC+TGG | 0.523237 | 6_2:-38585702 | None:intergenic |
| TGAGAGCAATTAGACGAAAG+TGG | 0.524192 | 6_2:-38587359 | None:intergenic |
| TCTCACTTGCACGCATATGC+GGG | 0.524777 | 6_2:+38586792 | Msa0916640:CDS |
| GCTTCCAGATGATTATCTTG+TGG | 0.527931 | 6_2:+38585770 | Msa0916640:CDS |
| CCCGCTCACTTGATGCATGA+TGG | 0.529067 | 6_2:+38586941 | Msa0916640:CDS |
| AACTGGAAGAGCGTCTTGAT+GGG | 0.529372 | 6_2:+38587152 | Msa0916640:CDS |
| TCCACTACAATGTTATCTAA+AGG | 0.529663 | 6_2:+38585527 | Msa0916640:CDS |
| CCAAACATGGATAAACAAGT+TGG | 0.530351 | 6_2:+38585836 | Msa0916640:CDS |
| AAAACTTATCTATATCTCTC+CGG | 0.537755 | 6_2:+38585954 | Msa0916640:CDS |
| CATTGCCTACGTACCAAACA+TGG | 0.538689 | 6_2:+38585823 | Msa0916640:CDS |
| ATATTTGATTGGAGCTGGCA+TGG | 0.538813 | 6_2:+38586013 | Msa0916640:CDS |
| TCAAACCTGTGGAGGAATGC+TGG | 0.543810 | 6_2:+38585661 | Msa0916640:CDS |
| CCATCATGCATCAAGTGAGC+GGG | 0.549039 | 6_2:-38586941 | None:intergenic |
| TCCTCCACAGGTTTGACCAA+TGG | 0.550904 | 6_2:-38585654 | None:intergenic |
| ATAAACAAGTTGGATGGAGT+TGG | 0.559959 | 6_2:+38585846 | Msa0916640:CDS |
| CGCATATGCGTGCAAGTGAG+AGG | 0.561577 | 6_2:-38586790 | None:intergenic |
| TGAGTTCATCCATCAAGTGC+AGG | 0.567672 | 6_2:+38585725 | Msa0916640:CDS |
| TATGGCCACCATAGCCTCGG+TGG | 0.570103 | 6_2:-38586888 | None:intergenic |
| GCCTTTAGATAACATTGTAG+TGG | 0.571116 | 6_2:-38585528 | None:intergenic |
| ACATGGATAAACAAGTTGGA+TGG | 0.572710 | 6_2:+38585840 | Msa0916640:CDS |
| ATTGAGGGTTTGACAAGCGA+AGG | 0.578019 | 6_2:+38587082 | Msa0916640:CDS |
| CTCAGCCGTTCGATCTCTCA+GGG | 0.579284 | 6_2:-38585748 | None:intergenic |
| TTGTTCATGGTGTAGGATGT+GGG | 0.582554 | 6_2:+38586662 | Msa0916640:intron |
| CAACAATATGCACCCATGCA+TGG | 0.584323 | 6_2:+38585502 | Msa0916640:CDS |
| TGTCACACGGCAACCTAGGT+AGG | 0.586115 | 6_2:+38586747 | Msa0916640:CDS |
| CATGCACATATCAACTCGAC+CGG | 0.587049 | 6_2:-38585973 | None:intergenic |
| TGATCCCACCGAGGCTATGG+TGG | 0.588287 | 6_2:+38586883 | Msa0916640:CDS |
| TGGTTCAAGTCTCACACCAT+GGG | 0.600203 | 6_2:+38585878 | Msa0916640:CDS |
| TTTGTGTCACACGGCAACCT+AGG | 0.600519 | 6_2:+38586743 | Msa0916640:CDS |
| TAGAGTTCTTGATTAGACGA+TGG | 0.605110 | 6_2:+38587047 | Msa0916640:CDS |
| TCCATCATGCATCAAGTGAG+CGG | 0.608659 | 6_2:-38586942 | None:intergenic |
| CTGGTTCAAGTCTCACACCA+TGG | 0.612232 | 6_2:+38585877 | Msa0916640:CDS |
| ATTGTAGTGGAGTCCATGCA+TGG | 0.616264 | 6_2:-38585515 | None:intergenic |
| GCAGGCCCTGAGAGATCGAA+CGG | 0.616767 | 6_2:+38585743 | Msa0916640:CDS |
| CGAGCCACATTTGTGTCACA+CGG | 0.618843 | 6_2:+38586734 | Msa0916640:CDS |
| ATGGCCACCATAGCCTCGGT+GGG | 0.619166 | 6_2:-38586887 | None:intergenic |
| TGCAATTATAAAACTTCACA+CGG | 0.621217 | 6_2:-38587227 | None:intergenic |
| GAGCGTGACCATATAGCCCA+TGG | 0.625365 | 6_2:-38585894 | None:intergenic |
| ACCGAAAACAACCCATACAT+GGG | 0.628237 | 6_2:+38586686 | Msa0916640:CDS |
| TATCAAATTAACAATGACGA+TGG | 0.630822 | 6_2:+38585479 | Msa0916640:exon |
| GTTGCCATTGGTCAAACCTG+TGG | 0.631709 | 6_2:+38585650 | Msa0916640:CDS |
| ACACGGCAACCTAGGTAGGT+TGG | 0.632318 | 6_2:+38586751 | Msa0916640:CDS |
| GGTAGGTTGGCTAAAGAGAG+AGG | 0.635441 | 6_2:+38586764 | Msa0916640:CDS |
| TGTACACAAAACCCATGTAT+GGG | 0.636404 | 6_2:-38586697 | None:intergenic |
| GAATGCATATGTGAGGATTG+TGG | 0.642224 | 6_2:+38586844 | Msa0916640:CDS |
| GAGTCTGGCAACAAATTATG+TGG | 0.650290 | 6_2:-38585687 | None:intergenic |
| GCCATTGGTCAAACCTGTGG+AGG | 0.654988 | 6_2:+38585653 | Msa0916640:CDS |
| CACTTGATGGATGAACTCAT+CGG | 0.663477 | 6_2:-38585721 | None:intergenic |
| GTCACGAGAATGCATATGTG+AGG | 0.664895 | 6_2:+38586837 | Msa0916640:CDS |
| ACCGCTGAAGAAAATAGACA+TGG | 0.664992 | 6_2:+38585921 | Msa0916640:CDS |
| CTCGTGACGCTTCTCATCAG+CGG | 0.665409 | 6_2:-38586822 | None:intergenic |
| TGATGGATGAACTCATCGGA+AGG | 0.673548 | 6_2:-38585717 | None:intergenic |
| TTGTAGTGGAGTCCATGCAT+GGG | 0.697506 | 6_2:-38585514 | None:intergenic |
| CATGCACAAGAGTTTGTGTG+TGG | 0.720139 | 6_2:+38587109 | Msa0916640:CDS |
| GTTGCCGTGTGACACAAATG+TGG | 0.723814 | 6_2:-38586738 | None:intergenic |
| GGTCGGTGGCATGATCACCG+AGG | 0.744020 | 6_2:+38585797 | Msa0916640:CDS |
| TCTAGAAGTTGATCCCACCG+AGG | 0.786898 | 6_2:+38586874 | Msa0916640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATGAAAAATGTTATT+TGG | - | chr6_2:38586636-38586655 | None:intergenic | 10.0% |
| !! | AATTTATGAAAAATGTTATT+TGG | - | chr6_2:38586636-38586655 | None:intergenic | 10.0% |
| !! | ATAAATTAATTGATTGTTCA+TGG | + | chr6_2:38586649-38586668 | Msa0916640:intron | 15.0% |
| !! | ATAAATTAATTGATTGTTCA+TGG | + | chr6_2:38586649-38586668 | Msa0916640:intron | 15.0% |
| !! | ATAAATCGTATTTGTGTATA+TGG | - | chr6_2:38586312-38586331 | None:intergenic | 20.0% |
| !! | ATAAATCGTATTTGTGTATA+TGG | - | chr6_2:38586312-38586331 | None:intergenic | 20.0% |
| ! | TATCAAATTAACAATGACGA+TGG | + | chr6_2:38585479-38585498 | Msa0916640:exon | 25.0% |
| ! | AAAACTTATCTATATCTCTC+CGG | + | chr6_2:38585954-38585973 | Msa0916640:CDS | 25.0% |
| ! | AAGACTATCCAATATTTGAT+TGG | + | chr6_2:38586002-38586021 | Msa0916640:CDS | 25.0% |
| !!! | ATTTGTTATTCTCGTTAGTT+TGG | - | chr6_2:38586214-38586233 | None:intergenic | 25.0% |
| ! | ACAATGCATAATATATGCAA+AGG | + | chr6_2:38586443-38586462 | Msa0916640:intron | 25.0% |
| ! | GAACGACTATTAAAAAATAG+TGG | - | chr6_2:38586508-38586527 | None:intergenic | 25.0% |
| ! | ATGTGATAGATAGAATATGT+TGG | - | chr6_2:38586572-38586591 | None:intergenic | 25.0% |
| !!! | TTCTATTTCTTTTTCTTTCG+AGG | + | chr6_2:38586597-38586616 | Msa0916640:intron | 25.0% |
| ! | TGCAATTATAAAACTTCACA+CGG | - | chr6_2:38587230-38587249 | None:intergenic | 25.0% |
| ! | TATCAAATTAACAATGACGA+TGG | + | chr6_2:38585479-38585498 | Msa0916640:exon | 25.0% |
| ! | AAAACTTATCTATATCTCTC+CGG | + | chr6_2:38585954-38585973 | Msa0916640:CDS | 25.0% |
| ! | AAGACTATCCAATATTTGAT+TGG | + | chr6_2:38586002-38586021 | Msa0916640:CDS | 25.0% |
| !!! | ATTTGTTATTCTCGTTAGTT+TGG | - | chr6_2:38586214-38586233 | None:intergenic | 25.0% |
| ! | ACAATGCATAATATATGCAA+AGG | + | chr6_2:38586443-38586462 | Msa0916640:intron | 25.0% |
| ! | GAACGACTATTAAAAAATAG+TGG | - | chr6_2:38586508-38586527 | None:intergenic | 25.0% |
| ! | ATGTGATAGATAGAATATGT+TGG | - | chr6_2:38586572-38586591 | None:intergenic | 25.0% |
| !!! | TTCTATTTCTTTTTCTTTCG+AGG | + | chr6_2:38586597-38586616 | Msa0916640:intron | 25.0% |
| ! | TGCAATTATAAAACTTCACA+CGG | - | chr6_2:38587230-38587249 | None:intergenic | 25.0% |
| TCCACTACAATGTTATCTAA+AGG | + | chr6_2:38585527-38585546 | Msa0916640:CDS | 30.0% | |
| !! | TTTTAGGAATGTTTTGGATG+GGG | - | chr6_2:38585553-38585572 | None:intergenic | 30.0% |
| !!! | GTTTTAGGAATGTTTTGGAT+GGG | - | chr6_2:38585554-38585573 | None:intergenic | 30.0% |
| ! | TTGAACACTTCTTTCTTTTC+AGG | - | chr6_2:38585600-38585619 | None:intergenic | 30.0% |
| TGTTCAAATCACTAGAGAAA+TGG | + | chr6_2:38585613-38585632 | Msa0916640:CDS | 30.0% | |
| GTTCAAATCACTAGAGAAAT+GGG | + | chr6_2:38585614-38585633 | Msa0916640:CDS | 30.0% | |
| AAAACCACAAGATAATCATC+TGG | - | chr6_2:38585777-38585796 | None:intergenic | 30.0% | |
| ! | AGATGATTATCTTGTGGTTT+TGG | + | chr6_2:38585776-38585795 | Msa0916640:CDS | 30.0% |
| ATATGTATAGATGACAGTGA+CGG | - | chr6_2:38586053-38586072 | None:intergenic | 30.0% | |
| ACATATACATGCACACAATA+TGG | + | chr6_2:38586067-38586086 | Msa0916640:intron | 30.0% | |
| !!! | TAGTGGTGTCTTTTTTTTTG+CGG | - | chr6_2:38586491-38586510 | None:intergenic | 30.0% |
| TAATTGATTGTTCATGGTGT+AGG | + | chr6_2:38586655-38586674 | Msa0916640:intron | 30.0% | |
| ! | TCTTCCAGTTTTCTTAATCT+AGG | - | chr6_2:38587142-38587161 | None:intergenic | 30.0% |
| AGATCAATCACAAATTCTCT+TGG | + | chr6_2:38587185-38587204 | Msa0916640:CDS | 30.0% | |
| TCCACTACAATGTTATCTAA+AGG | + | chr6_2:38585527-38585546 | Msa0916640:CDS | 30.0% | |
| !! | TTTTAGGAATGTTTTGGATG+GGG | - | chr6_2:38585553-38585572 | None:intergenic | 30.0% |
| !!! | GTTTTAGGAATGTTTTGGAT+GGG | - | chr6_2:38585554-38585573 | None:intergenic | 30.0% |
| ! | TTGAACACTTCTTTCTTTTC+AGG | - | chr6_2:38585600-38585619 | None:intergenic | 30.0% |
| TGTTCAAATCACTAGAGAAA+TGG | + | chr6_2:38585613-38585632 | Msa0916640:CDS | 30.0% | |
| GTTCAAATCACTAGAGAAAT+GGG | + | chr6_2:38585614-38585633 | Msa0916640:CDS | 30.0% | |
| AAAACCACAAGATAATCATC+TGG | - | chr6_2:38585777-38585796 | None:intergenic | 30.0% | |
| ! | AGATGATTATCTTGTGGTTT+TGG | + | chr6_2:38585776-38585795 | Msa0916640:CDS | 30.0% |
| ATATGTATAGATGACAGTGA+CGG | - | chr6_2:38586053-38586072 | None:intergenic | 30.0% | |
| ACATATACATGCACACAATA+TGG | + | chr6_2:38586067-38586086 | Msa0916640:intron | 30.0% | |
| !!! | TAGTGGTGTCTTTTTTTTTG+CGG | - | chr6_2:38586491-38586510 | None:intergenic | 30.0% |
| TAATTGATTGTTCATGGTGT+AGG | + | chr6_2:38586655-38586674 | Msa0916640:intron | 30.0% | |
| ! | TCTTCCAGTTTTCTTAATCT+AGG | - | chr6_2:38587142-38587161 | None:intergenic | 30.0% |
| AGATCAATCACAAATTCTCT+TGG | + | chr6_2:38587185-38587204 | Msa0916640:CDS | 30.0% | |
| GCCTTTAGATAACATTGTAG+TGG | - | chr6_2:38585531-38585550 | None:intergenic | 35.0% | |
| !!! | GGTTTTAGGAATGTTTTGGA+TGG | - | chr6_2:38585555-38585574 | None:intergenic | 35.0% |
| !!! | TTGGGGTTTTAGGAATGTTT+TGG | - | chr6_2:38585559-38585578 | None:intergenic | 35.0% |
| ! | AGACATTGAGTGTGTCTTTT+GGG | - | chr6_2:38585577-38585596 | None:intergenic | 35.0% |
| !!! | GATTATCTTGTGGTTTTGGT+CGG | + | chr6_2:38585780-38585799 | Msa0916640:CDS | 35.0% |
| TTTATCCATGTTTGGTACGT+AGG | - | chr6_2:38585831-38585850 | None:intergenic | 35.0% | |
| ! | CCAACTTGTTTATCCATGTT+TGG | - | chr6_2:38585839-38585858 | None:intergenic | 35.0% |
| CCAAACATGGATAAACAAGT+TGG | + | chr6_2:38585836-38585855 | Msa0916640:CDS | 35.0% | |
| ! | ACATGGATAAACAAGTTGGA+TGG | + | chr6_2:38585840-38585859 | Msa0916640:CDS | 35.0% |
| ! | ATAAACAAGTTGGATGGAGT+TGG | + | chr6_2:38585846-38585865 | Msa0916640:CDS | 35.0% |
| ! | TCCATGTCTATTTTCTTCAG+CGG | - | chr6_2:38585925-38585944 | None:intergenic | 35.0% |
| ATCCAATATTTGATTGGAGC+TGG | + | chr6_2:38586008-38586027 | Msa0916640:CDS | 35.0% | |
| ! | CGTTAGTTTGGCAAATGTAT+GGG | - | chr6_2:38586202-38586221 | None:intergenic | 35.0% |
| ! | TCGTTAGTTTGGCAAATGTA+TGG | - | chr6_2:38586203-38586222 | None:intergenic | 35.0% |
| GCATAATATATGCAAAGGTC+CGG | + | chr6_2:38586448-38586467 | Msa0916640:intron | 35.0% | |
| CATAATATATGCAAAGGTCC+GGG | + | chr6_2:38586449-38586468 | Msa0916640:intron | 35.0% | |
| TGTACACAAAACCCATGTAT+GGG | - | chr6_2:38586700-38586719 | None:intergenic | 35.0% | |
| ! | AATCTTGCGATGCATCATTT+TGG | - | chr6_2:38586915-38586934 | None:intergenic | 35.0% |
| TAGAGTTCTTGATTAGACGA+TGG | + | chr6_2:38587047-38587066 | Msa0916640:CDS | 35.0% | |
| TGCACCTAGATTAAGAAAAC+TGG | + | chr6_2:38587135-38587154 | Msa0916640:CDS | 35.0% | |
| GCCTTTAGATAACATTGTAG+TGG | - | chr6_2:38585531-38585550 | None:intergenic | 35.0% | |
| !!! | GGTTTTAGGAATGTTTTGGA+TGG | - | chr6_2:38585555-38585574 | None:intergenic | 35.0% |
| !!! | TTGGGGTTTTAGGAATGTTT+TGG | - | chr6_2:38585559-38585578 | None:intergenic | 35.0% |
| ! | AGACATTGAGTGTGTCTTTT+GGG | - | chr6_2:38585577-38585596 | None:intergenic | 35.0% |
| !!! | GATTATCTTGTGGTTTTGGT+CGG | + | chr6_2:38585780-38585799 | Msa0916640:CDS | 35.0% |
| TTTATCCATGTTTGGTACGT+AGG | - | chr6_2:38585831-38585850 | None:intergenic | 35.0% | |
| ! | CCAACTTGTTTATCCATGTT+TGG | - | chr6_2:38585839-38585858 | None:intergenic | 35.0% |
| CCAAACATGGATAAACAAGT+TGG | + | chr6_2:38585836-38585855 | Msa0916640:CDS | 35.0% | |
| ! | ACATGGATAAACAAGTTGGA+TGG | + | chr6_2:38585840-38585859 | Msa0916640:CDS | 35.0% |
| ! | ATAAACAAGTTGGATGGAGT+TGG | + | chr6_2:38585846-38585865 | Msa0916640:CDS | 35.0% |
| ! | TCCATGTCTATTTTCTTCAG+CGG | - | chr6_2:38585925-38585944 | None:intergenic | 35.0% |
| ATCCAATATTTGATTGGAGC+TGG | + | chr6_2:38586008-38586027 | Msa0916640:CDS | 35.0% | |
| ! | CGTTAGTTTGGCAAATGTAT+GGG | - | chr6_2:38586202-38586221 | None:intergenic | 35.0% |
| ! | TCGTTAGTTTGGCAAATGTA+TGG | - | chr6_2:38586203-38586222 | None:intergenic | 35.0% |
| GCATAATATATGCAAAGGTC+CGG | + | chr6_2:38586448-38586467 | Msa0916640:intron | 35.0% | |
| CATAATATATGCAAAGGTCC+GGG | + | chr6_2:38586449-38586468 | Msa0916640:intron | 35.0% | |
| TGTACACAAAACCCATGTAT+GGG | - | chr6_2:38586700-38586719 | None:intergenic | 35.0% | |
| ! | AATCTTGCGATGCATCATTT+TGG | - | chr6_2:38586915-38586934 | None:intergenic | 35.0% |
| TAGAGTTCTTGATTAGACGA+TGG | + | chr6_2:38587047-38587066 | Msa0916640:CDS | 35.0% | |
| TGCACCTAGATTAAGAAAAC+TGG | + | chr6_2:38587135-38587154 | Msa0916640:CDS | 35.0% | |
| !!! | AGTGTGTCTTTTGGGGTTTT+AGG | - | chr6_2:38585569-38585588 | None:intergenic | 40.0% |
| ! | GACATTGAGTGTGTCTTTTG+GGG | - | chr6_2:38585576-38585595 | None:intergenic | 40.0% |
| ! | GAGACATTGAGTGTGTCTTT+TGG | - | chr6_2:38585578-38585597 | None:intergenic | 40.0% |
| TTCACAAAGTGTGTTGCCAT+TGG | + | chr6_2:38585638-38585657 | Msa0916640:CDS | 40.0% | |
| GAGTCTGGCAACAAATTATG+TGG | - | chr6_2:38585690-38585709 | None:intergenic | 40.0% | |
| ! | CACTTGATGGATGAACTCAT+CGG | - | chr6_2:38585724-38585743 | None:intergenic | 40.0% |
| GCTTCCAGATGATTATCTTG+TGG | + | chr6_2:38585770-38585789 | Msa0916640:CDS | 40.0% | |
| ACCGCTGAAGAAAATAGACA+TGG | + | chr6_2:38585921-38585940 | Msa0916640:CDS | 40.0% | |
| TGCCAGCTCCAATCAAATAT+TGG | - | chr6_2:38586013-38586032 | None:intergenic | 40.0% | |
| ATATTTGATTGGAGCTGGCA+TGG | + | chr6_2:38586013-38586032 | Msa0916640:CDS | 40.0% | |
| AGCTCACAAGGACAAAATAG+AGG | - | chr6_2:38586406-38586425 | None:intergenic | 40.0% | |
| !!! | TCTTTTTTTTTGCGGTGGTC+GGG | - | chr6_2:38586483-38586502 | None:intergenic | 40.0% |
| !!! | GTCTTTTTTTTTGCGGTGGT+CGG | - | chr6_2:38586484-38586503 | None:intergenic | 40.0% |
| !!! | TGGTGTCTTTTTTTTTGCGG+TGG | - | chr6_2:38586488-38586507 | None:intergenic | 40.0% |
| ATTGTTCATGGTGTAGGATG+TGG | + | chr6_2:38586661-38586680 | Msa0916640:intron | 40.0% | |
| TTGTTCATGGTGTAGGATGT+GGG | + | chr6_2:38586662-38586681 | Msa0916640:intron | 40.0% | |
| TACCGAAAACAACCCATACA+TGG | + | chr6_2:38586685-38586704 | Msa0916640:CDS | 40.0% | |
| ACCGAAAACAACCCATACAT+GGG | + | chr6_2:38586686-38586705 | Msa0916640:CDS | 40.0% | |
| !! | ACCCATGTATGGGTTGTTTT+CGG | - | chr6_2:38586690-38586709 | None:intergenic | 40.0% |
| GTGTACACAAAACCCATGTA+TGG | - | chr6_2:38586701-38586720 | None:intergenic | 40.0% | |
| !! | AAATGTGGCTCGCTTTTGAA+AGG | - | chr6_2:38586726-38586745 | None:intergenic | 40.0% |
| GAATGCATATGTGAGGATTG+TGG | + | chr6_2:38586844-38586863 | Msa0916640:CDS | 40.0% | |
| ! | AAAAATGATCGAAGAGGCGT+GGG | - | chr6_2:38586973-38586992 | None:intergenic | 40.0% |
| CTGCAGAAAAATGATCGAAG+AGG | - | chr6_2:38586979-38586998 | None:intergenic | 40.0% | |
| !! | CTTCGATCATTTTTCTGCAG+TGG | + | chr6_2:38586979-38586998 | Msa0916640:CDS | 40.0% |
| CTTGATTAGACGATGGAGAT+TGG | + | chr6_2:38587054-38587073 | Msa0916640:CDS | 40.0% | |
| ATGGAGATTGGAGAAGATTG+AGG | + | chr6_2:38587066-38587085 | Msa0916640:CDS | 40.0% | |
| TGGAGATTGGAGAAGATTGA+GGG | + | chr6_2:38587067-38587086 | Msa0916640:CDS | 40.0% | |
| GAGAGCAATTAGACGAAAGT+GGG | - | chr6_2:38587361-38587380 | None:intergenic | 40.0% | |
| TGAGAGCAATTAGACGAAAG+TGG | - | chr6_2:38587362-38587381 | None:intergenic | 40.0% | |
| !!! | AGTGTGTCTTTTGGGGTTTT+AGG | - | chr6_2:38585569-38585588 | None:intergenic | 40.0% |
| ! | GACATTGAGTGTGTCTTTTG+GGG | - | chr6_2:38585576-38585595 | None:intergenic | 40.0% |
| ! | GAGACATTGAGTGTGTCTTT+TGG | - | chr6_2:38585578-38585597 | None:intergenic | 40.0% |
| TTCACAAAGTGTGTTGCCAT+TGG | + | chr6_2:38585638-38585657 | Msa0916640:CDS | 40.0% | |
| GAGTCTGGCAACAAATTATG+TGG | - | chr6_2:38585690-38585709 | None:intergenic | 40.0% | |
| ! | CACTTGATGGATGAACTCAT+CGG | - | chr6_2:38585724-38585743 | None:intergenic | 40.0% |
| GCTTCCAGATGATTATCTTG+TGG | + | chr6_2:38585770-38585789 | Msa0916640:CDS | 40.0% | |
| ACCGCTGAAGAAAATAGACA+TGG | + | chr6_2:38585921-38585940 | Msa0916640:CDS | 40.0% | |
| TGCCAGCTCCAATCAAATAT+TGG | - | chr6_2:38586013-38586032 | None:intergenic | 40.0% | |
| ATATTTGATTGGAGCTGGCA+TGG | + | chr6_2:38586013-38586032 | Msa0916640:CDS | 40.0% | |
| AGCTCACAAGGACAAAATAG+AGG | - | chr6_2:38586406-38586425 | None:intergenic | 40.0% | |
| !!! | TCTTTTTTTTTGCGGTGGTC+GGG | - | chr6_2:38586483-38586502 | None:intergenic | 40.0% |
| !!! | GTCTTTTTTTTTGCGGTGGT+CGG | - | chr6_2:38586484-38586503 | None:intergenic | 40.0% |
| !!! | TGGTGTCTTTTTTTTTGCGG+TGG | - | chr6_2:38586488-38586507 | None:intergenic | 40.0% |
| ATTGTTCATGGTGTAGGATG+TGG | + | chr6_2:38586661-38586680 | Msa0916640:intron | 40.0% | |
| TTGTTCATGGTGTAGGATGT+GGG | + | chr6_2:38586662-38586681 | Msa0916640:intron | 40.0% | |
| TACCGAAAACAACCCATACA+TGG | + | chr6_2:38586685-38586704 | Msa0916640:CDS | 40.0% | |
| ACCGAAAACAACCCATACAT+GGG | + | chr6_2:38586686-38586705 | Msa0916640:CDS | 40.0% | |
| !! | ACCCATGTATGGGTTGTTTT+CGG | - | chr6_2:38586690-38586709 | None:intergenic | 40.0% |
| GTGTACACAAAACCCATGTA+TGG | - | chr6_2:38586701-38586720 | None:intergenic | 40.0% | |
| !! | AAATGTGGCTCGCTTTTGAA+AGG | - | chr6_2:38586726-38586745 | None:intergenic | 40.0% |
| GAATGCATATGTGAGGATTG+TGG | + | chr6_2:38586844-38586863 | Msa0916640:CDS | 40.0% | |
| ! | AAAAATGATCGAAGAGGCGT+GGG | - | chr6_2:38586973-38586992 | None:intergenic | 40.0% |
| CTGCAGAAAAATGATCGAAG+AGG | - | chr6_2:38586979-38586998 | None:intergenic | 40.0% | |
| !! | CTTCGATCATTTTTCTGCAG+TGG | + | chr6_2:38586979-38586998 | Msa0916640:CDS | 40.0% |
| CTTGATTAGACGATGGAGAT+TGG | + | chr6_2:38587054-38587073 | Msa0916640:CDS | 40.0% | |
| ATGGAGATTGGAGAAGATTG+AGG | + | chr6_2:38587066-38587085 | Msa0916640:CDS | 40.0% | |
| TGGAGATTGGAGAAGATTGA+GGG | + | chr6_2:38587067-38587086 | Msa0916640:CDS | 40.0% | |
| GAGAGCAATTAGACGAAAGT+GGG | - | chr6_2:38587361-38587380 | None:intergenic | 40.0% | |
| TGAGAGCAATTAGACGAAAG+TGG | - | chr6_2:38587362-38587381 | None:intergenic | 40.0% | |
| CAACAATATGCACCCATGCA+TGG | + | chr6_2:38585502-38585521 | Msa0916640:CDS | 45.0% | |
| ! | TTGTAGTGGAGTCCATGCAT+GGG | - | chr6_2:38585517-38585536 | None:intergenic | 45.0% |
| ! | ATTGTAGTGGAGTCCATGCA+TGG | - | chr6_2:38585518-38585537 | None:intergenic | 45.0% |
| ! | TGATGGATGAACTCATCGGA+AGG | - | chr6_2:38585720-38585739 | None:intergenic | 45.0% |
| TGAGTTCATCCATCAAGTGC+AGG | + | chr6_2:38585725-38585744 | Msa0916640:CDS | 45.0% | |
| !!! | TATCTTGTGGTTTTGGTCGG+TGG | + | chr6_2:38585783-38585802 | Msa0916640:CDS | 45.0% |
| CATTGCCTACGTACCAAACA+TGG | + | chr6_2:38585823-38585842 | Msa0916640:CDS | 45.0% | |
| TGGTTCAAGTCTCACACCAT+GGG | + | chr6_2:38585878-38585897 | Msa0916640:CDS | 45.0% | |
| CATGCACATATCAACTCGAC+CGG | - | chr6_2:38585976-38585995 | None:intergenic | 45.0% | |
| TGCACTCGTAACACGTATGT+GGG | - | chr6_2:38586280-38586299 | None:intergenic | 45.0% | |
| CCAACTGAGTTAAGCTCACA+AGG | - | chr6_2:38586418-38586437 | None:intergenic | 45.0% | |
| CCTTGTGAGCTTAACTCAGT+TGG | + | chr6_2:38586415-38586434 | Msa0916640:intron | 45.0% | |
| TCTCTTTAGCCAACCTACCT+AGG | - | chr6_2:38586763-38586782 | None:intergenic | 45.0% | |
| GTCACGAGAATGCATATGTG+AGG | + | chr6_2:38586837-38586856 | Msa0916640:CDS | 45.0% | |
| !!! | GCGATGCATCATTTTGGCTA+TGG | - | chr6_2:38586909-38586928 | None:intergenic | 45.0% |
| TCCATCATGCATCAAGTGAG+CGG | - | chr6_2:38586945-38586964 | None:intergenic | 45.0% | |
| GAAAAATGATCGAAGAGGCG+TGG | - | chr6_2:38586974-38586993 | None:intergenic | 45.0% | |
| ATTGAGGGTTTGACAAGCGA+AGG | + | chr6_2:38587082-38587101 | Msa0916640:CDS | 45.0% | |
| CATGCACAAGAGTTTGTGTG+TGG | + | chr6_2:38587109-38587128 | Msa0916640:CDS | 45.0% | |
| !! | AAACTGGAAGAGCGTCTTGA+TGG | + | chr6_2:38587151-38587170 | Msa0916640:CDS | 45.0% |
| !! | AACTGGAAGAGCGTCTTGAT+GGG | + | chr6_2:38587152-38587171 | Msa0916640:CDS | 45.0% |
| ! | ATTAGACGAAAGTGGGCTCA+TGG | - | chr6_2:38587354-38587373 | None:intergenic | 45.0% |
| CAACAATATGCACCCATGCA+TGG | + | chr6_2:38585502-38585521 | Msa0916640:CDS | 45.0% | |
| ! | TTGTAGTGGAGTCCATGCAT+GGG | - | chr6_2:38585517-38585536 | None:intergenic | 45.0% |
| ! | ATTGTAGTGGAGTCCATGCA+TGG | - | chr6_2:38585518-38585537 | None:intergenic | 45.0% |
| ! | TGATGGATGAACTCATCGGA+AGG | - | chr6_2:38585720-38585739 | None:intergenic | 45.0% |
| TGAGTTCATCCATCAAGTGC+AGG | + | chr6_2:38585725-38585744 | Msa0916640:CDS | 45.0% | |
| !!! | TATCTTGTGGTTTTGGTCGG+TGG | + | chr6_2:38585783-38585802 | Msa0916640:CDS | 45.0% |
| CATTGCCTACGTACCAAACA+TGG | + | chr6_2:38585823-38585842 | Msa0916640:CDS | 45.0% | |
| TGGTTCAAGTCTCACACCAT+GGG | + | chr6_2:38585878-38585897 | Msa0916640:CDS | 45.0% | |
| CATGCACATATCAACTCGAC+CGG | - | chr6_2:38585976-38585995 | None:intergenic | 45.0% | |
| TGCACTCGTAACACGTATGT+GGG | - | chr6_2:38586280-38586299 | None:intergenic | 45.0% | |
| CCAACTGAGTTAAGCTCACA+AGG | - | chr6_2:38586418-38586437 | None:intergenic | 45.0% | |
| CCTTGTGAGCTTAACTCAGT+TGG | + | chr6_2:38586415-38586434 | Msa0916640:intron | 45.0% | |
| TCTCTTTAGCCAACCTACCT+AGG | - | chr6_2:38586763-38586782 | None:intergenic | 45.0% | |
| GTCACGAGAATGCATATGTG+AGG | + | chr6_2:38586837-38586856 | Msa0916640:CDS | 45.0% | |
| !!! | GCGATGCATCATTTTGGCTA+TGG | - | chr6_2:38586909-38586928 | None:intergenic | 45.0% |
| TCCATCATGCATCAAGTGAG+CGG | - | chr6_2:38586945-38586964 | None:intergenic | 45.0% | |
| GAAAAATGATCGAAGAGGCG+TGG | - | chr6_2:38586974-38586993 | None:intergenic | 45.0% | |
| ATTGAGGGTTTGACAAGCGA+AGG | + | chr6_2:38587082-38587101 | Msa0916640:CDS | 45.0% | |
| CATGCACAAGAGTTTGTGTG+TGG | + | chr6_2:38587109-38587128 | Msa0916640:CDS | 45.0% | |
| !! | AAACTGGAAGAGCGTCTTGA+TGG | + | chr6_2:38587151-38587170 | Msa0916640:CDS | 45.0% |
| !! | AACTGGAAGAGCGTCTTGAT+GGG | + | chr6_2:38587152-38587171 | Msa0916640:CDS | 45.0% |
| ! | ATTAGACGAAAGTGGGCTCA+TGG | - | chr6_2:38587354-38587373 | None:intergenic | 45.0% |
| GTTGCCATTGGTCAAACCTG+TGG | + | chr6_2:38585650-38585669 | Msa0916640:CDS | 50.0% | |
| TCCTCCACAGGTTTGACCAA+TGG | - | chr6_2:38585657-38585676 | None:intergenic | 50.0% | |
| TCAAACCTGTGGAGGAATGC+TGG | + | chr6_2:38585661-38585680 | Msa0916640:CDS | 50.0% | |
| TCGGAAGGTAGTGATGAGTC+TGG | - | chr6_2:38585705-38585724 | None:intergenic | 50.0% | |
| GTACGTAGGCAATGCTTCCT+CGG | - | chr6_2:38585817-38585836 | None:intergenic | 50.0% | |
| CTGGTTCAAGTCTCACACCA+TGG | + | chr6_2:38585877-38585896 | Msa0916640:CDS | 50.0% | |
| ! | GTCTCACACCATGGGCTATA+TGG | + | chr6_2:38585886-38585905 | Msa0916640:CDS | 50.0% |
| CTGCACTCGTAACACGTATG+TGG | - | chr6_2:38586281-38586300 | None:intergenic | 50.0% | |
| CACATACGTGTTACGAGTGC+AGG | + | chr6_2:38586279-38586298 | Msa0916640:intron | 50.0% | |
| CGAGCCACATTTGTGTCACA+CGG | + | chr6_2:38586734-38586753 | Msa0916640:CDS | 50.0% | |
| GTTGCCGTGTGACACAAATG+TGG | - | chr6_2:38586741-38586760 | None:intergenic | 50.0% | |
| TTTGTGTCACACGGCAACCT+AGG | + | chr6_2:38586743-38586762 | Msa0916640:CDS | 50.0% | |
| ! | GGTAGGTTGGCTAAAGAGAG+AGG | + | chr6_2:38586764-38586783 | Msa0916640:CDS | 50.0% |
| CTCTCACTTGCACGCATATG+CGG | + | chr6_2:38586791-38586810 | Msa0916640:CDS | 50.0% | |
| TCTCACTTGCACGCATATGC+GGG | + | chr6_2:38586792-38586811 | Msa0916640:CDS | 50.0% | |
| ! | TCTAGAAGTTGATCCCACCG+AGG | + | chr6_2:38586874-38586893 | Msa0916640:CDS | 50.0% |
| CCATCATGCATCAAGTGAGC+GGG | - | chr6_2:38586944-38586963 | None:intergenic | 50.0% | |
| TCTGCAGTGGCACAACGTAT+TGG | + | chr6_2:38586992-38587011 | Msa0916640:CDS | 50.0% | |
| GTTGCCATTGGTCAAACCTG+TGG | + | chr6_2:38585650-38585669 | Msa0916640:CDS | 50.0% | |
| TCCTCCACAGGTTTGACCAA+TGG | - | chr6_2:38585657-38585676 | None:intergenic | 50.0% | |
| TCAAACCTGTGGAGGAATGC+TGG | + | chr6_2:38585661-38585680 | Msa0916640:CDS | 50.0% | |
| TCGGAAGGTAGTGATGAGTC+TGG | - | chr6_2:38585705-38585724 | None:intergenic | 50.0% | |
| GTACGTAGGCAATGCTTCCT+CGG | - | chr6_2:38585817-38585836 | None:intergenic | 50.0% | |
| CTGGTTCAAGTCTCACACCA+TGG | + | chr6_2:38585877-38585896 | Msa0916640:CDS | 50.0% | |
| ! | GTCTCACACCATGGGCTATA+TGG | + | chr6_2:38585886-38585905 | Msa0916640:CDS | 50.0% |
| CTGCACTCGTAACACGTATG+TGG | - | chr6_2:38586281-38586300 | None:intergenic | 50.0% | |
| CACATACGTGTTACGAGTGC+AGG | + | chr6_2:38586279-38586298 | Msa0916640:intron | 50.0% | |
| CGAGCCACATTTGTGTCACA+CGG | + | chr6_2:38586734-38586753 | Msa0916640:CDS | 50.0% | |
| GTTGCCGTGTGACACAAATG+TGG | - | chr6_2:38586741-38586760 | None:intergenic | 50.0% | |
| TTTGTGTCACACGGCAACCT+AGG | + | chr6_2:38586743-38586762 | Msa0916640:CDS | 50.0% | |
| ! | GGTAGGTTGGCTAAAGAGAG+AGG | + | chr6_2:38586764-38586783 | Msa0916640:CDS | 50.0% |
| CTCTCACTTGCACGCATATG+CGG | + | chr6_2:38586791-38586810 | Msa0916640:CDS | 50.0% | |
| TCTCACTTGCACGCATATGC+GGG | + | chr6_2:38586792-38586811 | Msa0916640:CDS | 50.0% | |
| ! | TCTAGAAGTTGATCCCACCG+AGG | + | chr6_2:38586874-38586893 | Msa0916640:CDS | 50.0% |
| CCATCATGCATCAAGTGAGC+GGG | - | chr6_2:38586944-38586963 | None:intergenic | 50.0% | |
| TCTGCAGTGGCACAACGTAT+TGG | + | chr6_2:38586992-38587011 | Msa0916640:CDS | 50.0% | |
| GCCATTGGTCAAACCTGTGG+AGG | + | chr6_2:38585653-38585672 | Msa0916640:CDS | 55.0% | |
| CTCAGCCGTTCGATCTCTCA+GGG | - | chr6_2:38585751-38585770 | None:intergenic | 55.0% | |
| GAGCGTGACCATATAGCCCA+TGG | - | chr6_2:38585897-38585916 | None:intergenic | 55.0% | |
| GGGCTATATGGTCACGCTCT+TGG | + | chr6_2:38585898-38585917 | Msa0916640:CDS | 55.0% | |
| GGTGGTCGGGATTTGAATCC+CGG | - | chr6_2:38586470-38586489 | None:intergenic | 55.0% | |
| TGTCACACGGCAACCTAGGT+AGG | + | chr6_2:38586747-38586766 | Msa0916640:CDS | 55.0% | |
| ACACGGCAACCTAGGTAGGT+TGG | + | chr6_2:38586751-38586770 | Msa0916640:CDS | 55.0% | |
| CGCATATGCGTGCAAGTGAG+AGG | - | chr6_2:38586793-38586812 | None:intergenic | 55.0% | |
| CTCGTGACGCTTCTCATCAG+CGG | - | chr6_2:38586825-38586844 | None:intergenic | 55.0% | |
| AGTTGATCCCACCGAGGCTA+TGG | + | chr6_2:38586880-38586899 | Msa0916640:CDS | 55.0% | |
| CCCGCTCACTTGATGCATGA+TGG | + | chr6_2:38586941-38586960 | Msa0916640:CDS | 55.0% | |
| GCCATTGGTCAAACCTGTGG+AGG | + | chr6_2:38585653-38585672 | Msa0916640:CDS | 55.0% | |
| CTCAGCCGTTCGATCTCTCA+GGG | - | chr6_2:38585751-38585770 | None:intergenic | 55.0% | |
| GAGCGTGACCATATAGCCCA+TGG | - | chr6_2:38585897-38585916 | None:intergenic | 55.0% | |
| GGGCTATATGGTCACGCTCT+TGG | + | chr6_2:38585898-38585917 | Msa0916640:CDS | 55.0% | |
| GGTGGTCGGGATTTGAATCC+CGG | - | chr6_2:38586470-38586489 | None:intergenic | 55.0% | |
| TGTCACACGGCAACCTAGGT+AGG | + | chr6_2:38586747-38586766 | Msa0916640:CDS | 55.0% | |
| ACACGGCAACCTAGGTAGGT+TGG | + | chr6_2:38586751-38586770 | Msa0916640:CDS | 55.0% | |
| CGCATATGCGTGCAAGTGAG+AGG | - | chr6_2:38586793-38586812 | None:intergenic | 55.0% | |
| CTCGTGACGCTTCTCATCAG+CGG | - | chr6_2:38586825-38586844 | None:intergenic | 55.0% | |
| AGTTGATCCCACCGAGGCTA+TGG | + | chr6_2:38586880-38586899 | Msa0916640:CDS | 55.0% | |
| CCCGCTCACTTGATGCATGA+TGG | + | chr6_2:38586941-38586960 | Msa0916640:CDS | 55.0% | |
| CTCTCAGGGCCTGCACTTGA+TGG | - | chr6_2:38585737-38585756 | None:intergenic | 60.0% | |
| GCAGGCCCTGAGAGATCGAA+CGG | + | chr6_2:38585743-38585762 | Msa0916640:CDS | 60.0% | |
| GCTCAGCCGTTCGATCTCTC+AGG | - | chr6_2:38585752-38585771 | None:intergenic | 60.0% | |
| GATGGAGTTGGCGACGAGAC+TGG | + | chr6_2:38585858-38585877 | Msa0916640:CDS | 60.0% | |
| TGATCCCACCGAGGCTATGG+TGG | + | chr6_2:38586883-38586902 | Msa0916640:CDS | 60.0% | |
| ATGGCCACCATAGCCTCGGT+GGG | - | chr6_2:38586890-38586909 | None:intergenic | 60.0% | |
| TATGGCCACCATAGCCTCGG+TGG | - | chr6_2:38586891-38586910 | None:intergenic | 60.0% | |
| GGCTATGGCCACCATAGCCT+CGG | - | chr6_2:38586894-38586913 | None:intergenic | 60.0% | |
| CTCTCAGGGCCTGCACTTGA+TGG | - | chr6_2:38585737-38585756 | None:intergenic | 60.0% | |
| GCAGGCCCTGAGAGATCGAA+CGG | + | chr6_2:38585743-38585762 | Msa0916640:CDS | 60.0% | |
| GCTCAGCCGTTCGATCTCTC+AGG | - | chr6_2:38585752-38585771 | None:intergenic | 60.0% | |
| GATGGAGTTGGCGACGAGAC+TGG | + | chr6_2:38585858-38585877 | Msa0916640:CDS | 60.0% | |
| TGATCCCACCGAGGCTATGG+TGG | + | chr6_2:38586883-38586902 | Msa0916640:CDS | 60.0% | |
| ATGGCCACCATAGCCTCGGT+GGG | - | chr6_2:38586890-38586909 | None:intergenic | 60.0% | |
| TATGGCCACCATAGCCTCGG+TGG | - | chr6_2:38586891-38586910 | None:intergenic | 60.0% | |
| GGCTATGGCCACCATAGCCT+CGG | - | chr6_2:38586894-38586913 | None:intergenic | 60.0% | |
| GGCTGCCAGCATTCCTCCAC+AGG | - | chr6_2:38585669-38585688 | None:intergenic | 65.0% | |
| GGTCGGTGGCATGATCACCG+AGG | + | chr6_2:38585797-38585816 | Msa0916640:CDS | 65.0% | |
| GGCTGCCAGCATTCCTCCAC+AGG | - | chr6_2:38585669-38585688 | None:intergenic | 65.0% | |
| GGTCGGTGGCATGATCACCG+AGG | + | chr6_2:38585797-38585816 | Msa0916640:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 38585474 | 38587387 | 38585474 | ID=Msa0916640;Name=Msa0916640 |
| chr6_2 | mRNA | 38585474 | 38587387 | 38585474 | ID=Msa0916640-mRNA-1;Parent=Msa0916640;Name=Msa0916640-mRNA-1;_AED=0.00;_eAED=0.00;_QI=18|1|1|1|1|1|2|153|366 |
| chr6_2 | exon | 38585474 | 38586034 | 38585474 | ID=Msa0916640-mRNA-1:exon:6388;Parent=Msa0916640-mRNA-1 |
| chr6_2 | exon | 38586677 | 38587387 | 38586677 | ID=Msa0916640-mRNA-1:exon:6389;Parent=Msa0916640-mRNA-1 |
| chr6_2 | five_prime_UTR | 38585474 | 38585491 | 38585474 | ID=Msa0916640-mRNA-1:five_prime_utr;Parent=Msa0916640-mRNA-1 |
| chr6_2 | CDS | 38585492 | 38586034 | 38585492 | ID=Msa0916640-mRNA-1:cds;Parent=Msa0916640-mRNA-1 |
| chr6_2 | CDS | 38586677 | 38587234 | 38586677 | ID=Msa0916640-mRNA-1:cds;Parent=Msa0916640-mRNA-1 |
| chr6_2 | three_prime_UTR | 38587235 | 38587387 | 38587235 | ID=Msa0916640-mRNA-1:three_prime_utr;Parent=Msa0916640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
