AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0037570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037570 MtrunA17_Chr1g0195891 98.555 346 1 2 1 345 1 343 0.0 684
Msa0037570 MtrunA17_Chr1g0195891 53.947 76 33 1 297 370 91 166 3.50e-21 94.7
Msa0037570 MtrunA17_Chr4g0066941 53.069 505 176 11 4 459 5 497 3.89e-144 422
Msa0037570 MtrunA17_Chr2g0286151 51.282 468 191 13 1 444 1 455 1.93e-129 384
Msa0037570 MtrunA17_Chr7g0249221 48.626 364 171 8 33 386 9 366 3.62e-108 327
Msa0037570 MtrunA17_Chr5g0438891 36.923 390 209 10 48 433 36 392 2.33e-76 245
Msa0037570 MtrunA17_Chr5g0438891 37.838 111 57 3 12 122 237 335 9.98e-16 79.0
Msa0037570 MtrunA17_Chr5g0438891 38.614 101 50 2 293 388 32 125 2.90e-15 77.8
Msa0037570 MtrunA17_Chr4g0058011 36.207 348 168 13 44 374 227 537 4.87e-61 209
Msa0037570 MtrunA17_Chr4g0058011 50.538 93 43 1 93 185 458 547 1.57e-21 97.8
Msa0037570 MtrunA17_Chr3g0116431 34.985 343 177 9 42 370 165 475 5.02e-59 202
Msa0037570 MtrunA17_Chr3g0116431 47.368 114 54 3 92 204 399 507 1.81e-20 94.0
Msa0037570 MtrunA17_Chr3g0116431 35.000 100 58 2 297 393 171 266 8.73e-13 70.5
Msa0037570 MtrunA17_Chr1g0195901 96.970 99 3 0 374 472 1 99 9.57e-56 180
Msa0037570 MtrunA17_Chr8g0356241 33.803 355 197 9 42 370 132 474 1.14e-55 193
Msa0037570 MtrunA17_Chr8g0356241 36.025 161 56 3 56 170 317 476 2.21e-23 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0037570 AT2G47850.1 64.990 477 148 9 3 472 1 465 0.0 573
Msa0037570 AT2G47850.3 64.990 477 148 9 3 472 1 465 0.0 573
Msa0037570 AT2G47850.2 60.168 477 145 10 3 472 1 439 8.97e-178 506
Msa0037570 AT2G47850.4 63.818 351 112 7 129 472 1 343 2.98e-136 396
Msa0037570 AT2G47850.4 53.571 84 39 0 86 169 157 240 1.50e-23 102
Msa0037570 AT2G47850.4 41.414 99 51 2 46 137 162 260 2.30e-16 80.9
Msa0037570 AT5G18550.1 49.036 467 198 15 19 465 18 464 1.82e-125 373
Msa0037570 AT5G18550.4 52.267 419 162 13 19 417 18 418 2.88e-125 372
Msa0037570 AT5G18550.3 49.087 438 186 12 46 465 14 432 5.17e-123 366
Msa0037570 AT3G06410.1 52.184 412 169 11 1 393 1 403 5.03e-119 357
Msa0037570 AT5G18550.2 47.629 464 196 15 19 465 18 451 1.06e-118 355
Msa0037570 AT3G02830.1 46.154 364 166 7 33 386 19 362 3.88e-102 311
Msa0037570 AT3G02830.2 46.409 362 164 7 35 386 1 342 1.24e-101 309
Msa0037570 AT5G16540.1 43.003 393 154 13 33 410 20 357 1.91e-90 280
Msa0037570 AT5G16540.1 37.107 159 78 6 297 446 84 229 2.60e-20 92.8
Msa0037570 AT5G16540.3 43.223 391 152 13 35 410 1 336 4.14e-90 279
Msa0037570 AT5G16540.3 37.107 159 78 6 297 446 63 208 2.16e-20 92.8
Msa0037570 AT5G16540.2 41.432 391 156 13 33 410 20 350 3.69e-84 264
Msa0037570 AT5G16540.2 37.107 159 78 6 297 446 84 229 1.98e-20 93.2
Msa0037570 AT5G16540.4 43.614 321 119 11 35 345 1 269 3.76e-75 237
Msa0037570 AT5G16540.4 37.107 159 78 6 297 446 63 208 9.78e-21 92.4
Msa0037570 AT5G16540.4 43.878 98 50 2 297 393 18 111 5.83e-17 81.3
Msa0037570 AT1G04990.1 35.475 358 171 9 28 370 21 333 2.08e-64 214
Msa0037570 AT1G04990.6 35.475 358 171 9 28 370 21 333 2.08e-64 214
Msa0037570 AT1G04990.2 35.475 358 171 9 28 370 21 333 2.08e-64 214
Msa0037570 AT3G48440.1 35.511 352 192 9 48 387 107 435 4.96e-62 209
Msa0037570 AT3G48440.1 33.858 127 34 2 294 370 104 230 2.80e-15 78.2
Msa0037570 AT3G48440.1 39.241 79 45 2 45 121 340 417 3.61e-11 65.5
Msa0037570 AT2G32930.2 34.667 375 195 12 31 392 21 358 1.69e-58 199
Msa0037570 AT2G32930.3 36.338 355 179 11 48 392 14 331 2.62e-58 198
Msa0037570 AT1G04990.5 33.708 356 160 9 28 370 21 313 1.08e-56 193
Msa0037570 AT1G04990.5 38.043 92 56 1 297 388 44 134 7.13e-14 73.6
Msa0037570 AT5G63260.1 35.429 350 189 11 48 386 98 421 5.59e-54 187
Msa0037570 AT5G63260.1 42.718 103 54 1 89 191 327 424 2.07e-18 87.8
Msa0037570 AT5G63260.1 32.394 142 41 3 296 388 97 232 3.20e-15 78.2
Msa0037570 AT5G63260.1 38.462 78 47 1 45 121 328 405 3.49e-12 68.6
Msa0037570 AT2G32930.1 33.867 375 194 13 31 392 21 354 1.48e-53 186
Msa0037570 AT3G12680.1 33.705 359 195 9 33 370 163 499 7.01e-52 184
Msa0037570 AT3G12680.1 39.024 164 58 4 49 170 338 501 5.68e-27 114
Msa0037570 AT3G12680.1 41.748 103 51 2 28 122 398 499 1.73e-17 85.5
Msa0037570 AT5G63260.2 33.880 366 189 11 48 386 98 437 1.29e-51 181
Msa0037570 AT5G63260.2 42.718 103 54 1 89 191 343 440 2.03e-18 87.8
Msa0037570 AT5G63260.2 45.652 92 42 2 299 388 163 248 7.92e-18 86.3
Msa0037570 AT5G63260.2 38.462 78 47 1 45 121 344 421 3.86e-12 68.6
Msa0037570 AT1G04990.3 35.714 280 125 7 103 370 16 252 3.31e-44 158
Msa0037570 AT1G04990.3 48.571 70 36 0 59 128 17 86 7.62e-18 84.7
Msa0037570 AT1G04990.3 38.017 121 61 4 81 190 165 282 1.10e-13 72.4
Msa0037570 AT1G04990.4 33.453 278 114 7 103 370 16 232 7.57e-37 137
Msa0037570 AT1G04990.4 48.571 70 36 0 59 128 17 86 9.73e-18 84.3
Msa0037570 AT1G48195.1 51.250 80 37 1 292 369 1 80 3.65e-20 85.1
Msa0037570 AT1G48195.1 52.000 75 36 0 93 167 6 80 1.43e-18 80.5

Find 192 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGGGGTTGTTCCATTTCC+TGG 0.149575 1_1:-66610123 Msa0037570:CDS
ACCGGTTCACCGGGTCTTTC+AGG 0.153591 1_1:+66609804 None:intergenic
AAAACTGGAACCTGTAAATT+TGG 0.163743 1_1:-66610583 Msa0037570:CDS
AAAACGGGGCAGTGCAAATT+TGG 0.196691 1_1:-66610351 Msa0037570:CDS
AGAACTGGGGACTGTAAATT+TGG 0.217131 1_1:-66609765 Msa0037570:CDS
CAAGCTCCACTAAATATTTA+TGG 0.224349 1_1:-66610511 Msa0037570:CDS
CGAGAGAGACAGAAAGAAAA+TGG 0.228655 1_1:+66611698 None:intergenic
CTTCAACATCTTCAGAATTT+CGG 0.252360 1_1:-66607397 Msa0037570:CDS
ATGCTCCTCTCAGTATTTAA+TGG 0.254508 1_1:-66607117 Msa0037570:three_prime_UTR
CAAAATGGGCACTGCAAGTT+TGG 0.265662 1_1:-66607539 Msa0037570:CDS
CTGGCGCGCAACCTGCTGTT+GGG 0.306993 1_1:-66609947 Msa0037570:CDS
ACAAGACGCGCCAAATTTAC+AGG 0.307599 1_1:+66610573 None:intergenic
CTTCATACTATTATGCTTTG+TGG 0.327068 1_1:-66606957 Msa0037570:three_prime_UTR
GAAGAGGGCAGAGGAGTATA+AGG 0.330274 1_1:+66609867 None:intergenic
TCCTGAAGTGTGTTTCCTCC+AGG 0.341736 1_1:+66609837 None:intergenic
GGAGATAACACAGGGCTTAC+AGG 0.346214 1_1:+66609969 None:intergenic
TCCTGGATGGAGTCCTTATT+CGG 0.346285 1_1:-66610106 Msa0037570:intron
CTGCCCTCTTCTCCTGGCCC+TGG 0.347929 1_1:-66609855 Msa0037570:CDS
GTTGGGGCTACTTCTCTTTA+CGG 0.355067 1_1:-66609930 Msa0037570:CDS
TGCTCCTATTATTTGAAAAC+GGG 0.359605 1_1:-66610366 Msa0037570:CDS
CATTCTGGCTGAAAAGGAAT+TGG 0.360799 1_1:+66607355 None:intergenic
CATTCATCTGGAAATGGTTC+TGG 0.366848 1_1:-66607332 Msa0037570:CDS
TCATATGTACAAGGGGCTTA+TGG 0.368244 1_1:-66610162 Msa0037570:CDS
CCAACAGCAGGTTGCGCGCC+AGG 0.368459 1_1:+66609948 None:intergenic
AAAGAGAGTTAGCGATTTAG+AGG 0.369711 1_1:-66606869 Msa0037570:three_prime_UTR
CGACCACTTCTTAGTCCCTT+TGG 0.371098 1_1:-66609699 Msa0037570:CDS
TATGTGTCTCTTACCGAATA+AGG 0.372520 1_1:+66610093 None:intergenic
TAGAATGATCTAGAATGTTC+TGG 0.372795 1_1:+66611627 None:intergenic
TGCCAATACTATATGAGAAC+TGG 0.381157 1_1:-66609780 Msa0037570:CDS
TAAGATGATTATGTTTAGAC+AGG 0.383054 1_1:-66606920 Msa0037570:three_prime_UTR
GCTGCTGATGCTACTGCTCT+TGG 0.385955 1_1:-66611459 Msa0037570:CDS
ACTCCTCTGCCCTCTTCTCC+TGG 0.392892 1_1:-66609861 Msa0037570:CDS
CTCGACTCGACGAGGAAGTT+AGG 0.394395 1_1:-66611679 Msa0037570:five_prime_UTR
GGAGGTTCGCCAAGCCTCTC+CGG 0.397154 1_1:+66610730 None:intergenic
AGAGTCGAACCGGTCGTAAT+GGG 0.398417 1_1:+66610485 None:intergenic
TGTGCTTATTATATGAGAAC+CGG 0.398738 1_1:-66611255 Msa0037570:CDS
TGCAGTGCAAAACTGACATT+CGG 0.398789 1_1:+66606844 None:intergenic
TTGGATCCTGACTTCAGTTC+AGG 0.402122 1_1:+66607374 None:intergenic
CCTGGCGCGCAACCTGCTGT+TGG 0.402151 1_1:-66609948 Msa0037570:CDS
AAGAGTCGAACCGGTCGTAA+TGG 0.402365 1_1:+66610484 None:intergenic
TCAGCCAGAATGCATTCATC+TGG 0.404570 1_1:-66607344 Msa0037570:CDS
AGCCCCTTGTACATATGAAC+CGG 0.406272 1_1:+66610167 None:intergenic
TAAGGACTCCATCCAGGAAA+TGG 0.406810 1_1:+66610111 None:intergenic
TGAATGCATTCTGGCTGAAA+AGG 0.407290 1_1:+66607349 None:intergenic
GGTGGGTCTGTCTCACTGTC+TGG 0.408100 1_1:-66607281 Msa0037570:CDS
GTGCTCCTATTATTTGAAAA+CGG 0.410929 1_1:-66610367 Msa0037570:CDS
GTGTTTACGAGAAAGGAAAA+TGG 0.411487 1_1:+66611588 None:intergenic
CATAAATATTTAGTGGAGCT+TGG 0.417854 1_1:+66610512 None:intergenic
CTGTACAGTGTTTACGAGAA+AGG 0.418611 1_1:+66611581 None:intergenic
CCTCCTCTGCCGGAACAGTT+TGG 0.418933 1_1:-66610234 Msa0037570:CDS
TCCTGAAAGACCCGGTGAAC+CGG 0.419994 1_1:-66609805 Msa0037570:CDS
TTCGGTACACCATGTCTCTC+CGG 0.421325 1_1:+66611279 None:intergenic
CCAACTGGGTATGGAGCAAC+TGG 0.428649 1_1:+66607443 None:intergenic
TATGCTTTGTGGACTTATGC+TGG 0.433115 1_1:-66606946 Msa0037570:three_prime_UTR
GGTCCCGTGCTTCTTTCCCC+AGG 0.436024 1_1:-66610141 Msa0037570:CDS
CCCTGGAGGAAACACACTTC+AGG 0.438306 1_1:-66609838 Msa0037570:CDS
ATTTCCAGATGAATGCATTC+TGG 0.440875 1_1:+66607340 None:intergenic
GCTGCTGCAGTAAGAGCTAC+AGG 0.442302 1_1:-66610760 Msa0037570:CDS
CAGTTGCTCCATACCCAGTT+GGG 0.446844 1_1:-66607442 Msa0037570:CDS
AATGGTTCTGGTACCTCTGT+TGG 0.448422 1_1:-66607320 Msa0037570:CDS
CATTTATCACTTGGTGGTGG+TGG 0.458400 1_1:-66611315 Msa0037570:CDS
CTCATATAATAAGCACAATT+CGG 0.458439 1_1:+66611261 None:intergenic
CCTGAAGTGTGTTTCCTCCA+GGG 0.458829 1_1:+66609838 None:intergenic
AGTAAAGACCCAACTGGGTA+TGG 0.465151 1_1:+66607434 None:intergenic
GGGTTGTTCCATTTCCTGGA+TGG 0.465512 1_1:-66610119 Msa0037570:CDS
GAAGCTCCTCCAAACTGTTC+CGG 0.468963 1_1:+66610225 None:intergenic
GAGAGAGACAGAAAGAAAAT+GGG 0.469232 1_1:+66611699 None:intergenic
CTCATATAGTATTGGCAGAC+CGG 0.470230 1_1:+66609786 None:intergenic
CTTTGGTCTTCCTCTACGCC+CGG 0.470273 1_1:-66609682 Msa0037570:intron
GTCCCGTGCTTCTTTCCCCA+GGG 0.477072 1_1:-66610140 Msa0037570:CDS
CCAGTTGCTCCATACCCAGT+TGG 0.481757 1_1:-66607443 Msa0037570:CDS
AGAATGCATTCATCTGGAAA+TGG 0.482468 1_1:-66607338 Msa0037570:CDS
TCCTCCAGGGCCAGGAGAAG+AGG 0.485909 1_1:+66609851 None:intergenic
CTTTCTCGTAAACACTGTAC+AGG 0.487912 1_1:-66611580 Msa0037570:five_prime_UTR
CCAGGAAATGGAACAACCCC+TGG 0.488180 1_1:+66610123 None:intergenic
GCTTGGCGAACCTCCATGTC+AGG 0.489422 1_1:-66610722 Msa0037570:intron
CCCCAGTTCTCATATAGTAT+TGG 0.489917 1_1:+66609778 None:intergenic
CTGAAGATGTTGAAGGAACC+AGG 0.490486 1_1:+66607405 None:intergenic
GTAAGCCCTGTGTTATCTCC+TGG 0.490761 1_1:-66609966 Msa0037570:CDS
CCCTCTTCTCCTGGCCCTGG+AGG 0.494580 1_1:-66609852 Msa0037570:CDS
GGGTATCCATAAATATTTAG+TGG 0.496866 1_1:+66610505 None:intergenic
TTAGATAGTAAAGACCCAAC+TGG 0.497066 1_1:+66607428 None:intergenic
ACCCCTGGGGAAAGAAGCAC+GGG 0.497178 1_1:+66610138 None:intergenic
CGCCATTCATGTTGATTAAG+CGG 0.499950 1_1:+66611489 None:intergenic
GGTCGGAGCCCCACTAGAAA+CGG 0.501024 1_1:-66611519 Msa0037570:CDS
GCAGTGCAAAACTGACATTC+GGG 0.502440 1_1:+66606845 None:intergenic
CCTCTGCCGGAACAGTTTGG+AGG 0.503926 1_1:-66610231 Msa0037570:CDS
TGCAAGTTTGATCATCCTGC+GGG 0.504011 1_1:-66607509 Msa0037570:CDS
CCTCCAAACTGTTCCGGCAG+AGG 0.504937 1_1:+66610231 None:intergenic
TGGGTCTTTACTATCTAACC+TGG 0.505387 1_1:-66607423 Msa0037570:CDS
GGGGACTACCCGGAGAGGCT+TGG 0.507506 1_1:-66610739 Msa0037570:CDS
CGGGTTGGATCCGTTTCTAG+TGG 0.508512 1_1:+66611509 None:intergenic
GCCATTCATGTTGATTAAGC+GGG 0.509081 1_1:+66611490 None:intergenic
GGGTTGGATCCGTTTCTAGT+GGG 0.515461 1_1:+66611510 None:intergenic
AGTGTGTTTCCTCCAGGGCC+AGG 0.516627 1_1:+66609843 None:intergenic
TTCATGTTGATTAAGCGGGT+TGG 0.518663 1_1:+66611494 None:intergenic
TCTTTACCTTTGTACAGAGC+AGG 0.520007 1_1:+66606887 None:intergenic
TTTCGGCCTGAACTGAAGTC+AGG 0.521259 1_1:-66607380 Msa0037570:CDS
CAGAGTTCTGCTTCTTTGAA+CGG 0.524210 1_1:-66607242 Msa0037570:CDS
CGAAATTCTGAAGATGTTGA+AGG 0.524251 1_1:+66607398 None:intergenic
ACCGAATAAGGACTCCATCC+AGG 0.527011 1_1:+66610105 None:intergenic
CCTCCAGGGCCAGGAGAAGA+GGG 0.528497 1_1:+66609852 None:intergenic
GGGCCAGGAGAAGAGGGCAG+AGG 0.530606 1_1:+66609858 None:intergenic
GCTGATGCTACTGCTCTTGG+AGG 0.530886 1_1:-66611456 Msa0037570:intron
GTATTGGCAGACCGGTTCAC+CGG 0.534770 1_1:+66609794 None:intergenic
GATCACGCGGGTGATTGAAA+CGG 0.536117 1_1:+66611208 None:intergenic
CTCTCTCTCTGGAAACTGTA+CGG 0.536785 1_1:+66611814 None:intergenic
GAGGTTCGCCAAGCCTCTCC+GGG 0.539007 1_1:+66610731 None:intergenic
TCCAACGGTTCCTCCTCTGC+CGG 0.542744 1_1:-66610244 Msa0037570:CDS
TTCCACCATCCTCAACCTGC+TGG 0.542831 1_1:-66610315 Msa0037570:CDS
AGAGAAGTAGCCCCAACAGC+AGG 0.544267 1_1:+66609936 None:intergenic
ATATCATCATCCACGGGACC+AGG 0.545094 1_1:-66609730 Msa0037570:CDS
ATGTGGCATTTATCACTTGG+TGG 0.548863 1_1:-66611321 Msa0037570:CDS
TCGGTACACCATGTCTCTCC+GGG 0.549964 1_1:+66611280 None:intergenic
TCCGGCAGAGGAGGAACCGT+TGG 0.550152 1_1:+66610243 None:intergenic
AATGAAGTGCCAGCAGGTTG+AGG 0.551017 1_1:+66610306 None:intergenic
TATTGGCAGACCGGTTCACC+GGG 0.551065 1_1:+66609795 None:intergenic
CCGTGGATGATGATATCGAC+AGG 0.551295 1_1:+66609737 None:intergenic
CGTTCAAAGAAGCAGAACTC+TGG 0.551424 1_1:+66607243 None:intergenic
AGAGCAGTAGCATCAGCAGC+AGG 0.552367 1_1:+66611462 None:intergenic
ACCCGCTTAATCAACATGAA+TGG 0.553551 1_1:-66611491 Msa0037570:CDS
CACACGAACGAGAGAACACA+AGG 0.555271 1_1:-66611740 Msa0037570:five_prime_UTR
TGCCAGCAGGTTGAGGATGG+TGG 0.556077 1_1:+66610313 None:intergenic
TCGATGTGGCATTTATCACT+TGG 0.559752 1_1:-66611324 Msa0037570:CDS
CCAAACTGTTCCGGCAGAGG+AGG 0.560230 1_1:+66610234 None:intergenic
GCCAATACTATATGAGAACT+GGG 0.562063 1_1:-66609779 Msa0037570:CDS
AGCACACAAGAATCACGATT+GGG 0.562359 1_1:+66607053 None:intergenic
GGGCGTAGAGGAAGACCAAA+GGG 0.563721 1_1:+66609684 None:intergenic
TAAAATTGAGGTGCAGATGC+TGG 0.564467 1_1:+66610282 None:intergenic
AACCCCTGGGGAAAGAAGCA+CGG 0.566411 1_1:+66610137 None:intergenic
TGGCGCGCAACCTGCTGTTG+GGG 0.568122 1_1:-66609946 Msa0037570:CDS
GAAGTGGTCGTGCAGCAACC+TGG 0.569368 1_1:+66609712 None:intergenic
GCTAGACCTCCTGTGTTACC+CGG 0.569379 1_1:-66610186 Msa0037570:CDS
TCTAGAATGTTCTGGAAGAT+CGG 0.571009 1_1:+66611635 None:intergenic
CAGGAAATGGAACAACCCCT+GGG 0.572341 1_1:+66610124 None:intergenic
CTGTCTCTCTCGACTCGACG+AGG 0.573937 1_1:-66611687 Msa0037570:five_prime_UTR
AGCTTCTGCAAGTGTGAGAG+TGG 0.577326 1_1:-66610208 Msa0037570:CDS
TTTCTTCCTGCTCTGTACAA+AGG 0.580033 1_1:-66606893 Msa0037570:three_prime_UTR
TGGCATTTATCACTTGGTGG+TGG 0.580267 1_1:-66611318 Msa0037570:CDS
TCAACAGGTGCAGTCTCCAA+CGG 0.580807 1_1:-66610259 Msa0037570:CDS
CGTGCAGCAACCTGGTCCCG+TGG 0.581143 1_1:+66609720 None:intergenic
CTGTATCTCATTGACCCCGC+AGG 0.585745 1_1:+66607494 None:intergenic
GTGCTTATTATATGAGAACC+GGG 0.587111 1_1:-66611254 Msa0037570:CDS
TAGCACACAAGAATCACGAT+TGG 0.588728 1_1:+66607052 None:intergenic
TCAATAAGAGAAGATGCTGA+TGG 0.590082 1_1:+66607470 None:intergenic
GGTTGGATCCGTTTCTAGTG+GGG 0.592076 1_1:+66611511 None:intergenic
AAACAAAATTATACCTGACA+TGG 0.597128 1_1:+66610709 None:intergenic
TTACCCGGTTCATATGTACA+AGG 0.598382 1_1:-66610171 Msa0037570:CDS
ACCATTCATACCGGGCGTAG+AGG 0.599219 1_1:+66609672 None:intergenic
TTATGGATACCCATTACGAC+CGG 0.600721 1_1:-66610494 Msa0037570:intron
AAGAGCTACAGGGGACTACC+CGG 0.601311 1_1:-66610749 Msa0037570:CDS
CTGCTGCAGTAAGAGCTACA+GGG 0.603414 1_1:-66610759 Msa0037570:CDS
GAATCTTACCCGGAGAGACA+TGG 0.604072 1_1:-66611288 Msa0037570:CDS
AGGAGCATGAACAGAAGCAA+TGG 0.605978 1_1:+66607132 None:intergenic
AAGAGAGTTAGCGATTTAGA+GGG 0.608238 1_1:-66606868 Msa0037570:three_prime_UTR
AGCATGAACAGAAGCAATGG+TGG 0.610209 1_1:+66607135 None:intergenic
CCTGTCGATATCATCATCCA+CGG 0.616717 1_1:-66609737 Msa0037570:CDS
ACCCGGTTCATATGTACAAG+GGG 0.619952 1_1:-66610169 Msa0037570:CDS
TGCGCGCCAGGAGATAACAC+AGG 0.621580 1_1:+66609960 None:intergenic
GCTGGCAATGAAGTGCCAGC+AGG 0.622750 1_1:+66610300 None:intergenic
TCCACCATATCCACAAAACC+CGG 0.626060 1_1:+66611236 None:intergenic
TAGATAGTAAAGACCCAACT+GGG 0.626186 1_1:+66607429 None:intergenic
ATTCTTGTGTGCTATACACC+AGG 0.628639 1_1:-66607043 Msa0037570:three_prime_UTR
CTGTCGATATCATCATCCAC+GGG 0.629057 1_1:-66609736 Msa0037570:CDS
TCCCGTGCTTCTTTCCCCAG+GGG 0.630198 1_1:-66610139 Msa0037570:CDS
TGCACCTGTTGATAAAATTG+AGG 0.642079 1_1:+66610270 None:intergenic
GCCCCTTGTACATATGAACC+GGG 0.643721 1_1:+66610168 None:intergenic
AAGATGATTATGTTTAGACA+GGG 0.643889 1_1:-66606919 Msa0037570:three_prime_UTR
TGGTGGTGTTGAATCTTACC+CGG 0.644232 1_1:-66611298 Msa0037570:CDS
AGCAGAAGCAGCAGACAGAG+TGG 0.645532 1_1:-66607218 Msa0037570:CDS
ACATATGAACCGGGTAACAC+AGG 0.645643 1_1:+66610177 None:intergenic
ATTACCGCAGCACGATCACG+CGG 0.645892 1_1:+66611195 None:intergenic
ATGCAAGTTTGATCATCCTG+CGG 0.650257 1_1:-66607510 Msa0037570:CDS
AGACCAAAGGGACTAAGAAG+TGG 0.653237 1_1:+66609696 None:intergenic
AAGTGCCAGCAGGTTGAGGA+TGG 0.654749 1_1:+66610310 None:intergenic
CAAAATTATACCTGACATGG+AGG 0.657604 1_1:+66610712 None:intergenic
TACCCGGTTCATATGTACAA+GGG 0.670537 1_1:-66610170 Msa0037570:CDS
GCTCCTATTATTTGAAAACG+GGG 0.671672 1_1:-66610365 Msa0037570:CDS
CGGGCGTAGAGGAAGACCAA+AGG 0.672188 1_1:+66609683 None:intergenic
TCACCCGCGTGATCGTGCTG+CGG 0.674265 1_1:-66611199 Msa0037570:intron
AAAGTATTTCCTGAAAGACC+CGG 0.677421 1_1:-66609813 Msa0037570:CDS
GCGCGCCAGGAGATAACACA+GGG 0.680593 1_1:+66609961 None:intergenic
CTACAGGGGACTACCCGGAG+AGG 0.687189 1_1:-66610744 Msa0037570:CDS
AAGCATAAAAGAGAATGACC+TGG 0.694248 1_1:+66607025 None:intergenic
TGCTGCAGTAAGAGCTACAG+GGG 0.695738 1_1:-66610758 Msa0037570:CDS
GTTTATGTTCAGAGTCGATG+TGG 0.699078 1_1:-66611338 Msa0037570:intron
TATGAACCGGGTAACACAGG+AGG 0.706559 1_1:+66610180 None:intergenic
AGTTGCCATTAAATACTGAG+AGG 0.712026 1_1:+66607112 None:intergenic
AGGAAATGGAACAACCCCTG+GGG 0.738169 1_1:+66610125 None:intergenic
CCAATACTATATGAGAACTG+GGG 0.738213 1_1:-66609778 Msa0037570:CDS
TTACCGCAGCACGATCACGC+GGG 0.739210 1_1:+66611196 None:intergenic
GCAAGTTTGATCATCCTGCG+GGG 0.750469 1_1:-66607508 Msa0037570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTGTAATTTATTAATT+AGG - chr1_1:66607312-66607331 Msa0037570:CDS 10.0%
!! TTAATTGAATTTAACAATTT+AGG + chr1_1:66607632-66607651 None:intergenic 10.0%
!! AAATTGTTAAATTCAATTAA+AGG - chr1_1:66607632-66607651 Msa0037570:intron 10.0%
!!! CATTTTTTTCAATTTTTTAT+CGG - chr1_1:66607695-66607714 Msa0037570:intron 10.0%
!! ATATTATTTACACATTTATA+TGG + chr1_1:66609136-66609155 None:intergenic 10.0%
!! AAAAAATAAAATGAATGTTA+AGG + chr1_1:66609398-66609417 None:intergenic 10.0%
!!! CATTATTTGTATATTTTTTA+TGG - chr1_1:66610097-66610116 Msa0037570:intron 10.0%
!! AAATAATATGTATTCTATTC+AGG - chr1_1:66609147-66609166 Msa0037570:intron 15.0%
!! AAATAAACACATTAATAGTT+GGG + chr1_1:66609524-66609543 None:intergenic 15.0%
!!! ATTCAGACATTTATTTTAAT+CGG + chr1_1:66611044-66611063 None:intergenic 15.0%
!!! TAATTTATTTTCTAGAAAAC+AGG - chr1_1:66611102-66611121 Msa0037570:intron 15.0%
!!! AATTTATTTTCTAGAAAACA+GGG - chr1_1:66611103-66611122 Msa0037570:intron 15.0%
!!! TTTTGTATATAAAATGAACA+AGG + chr1_1:66611136-66611155 None:intergenic 15.0%
!!! TGTTCATTTTATATACAAAA+TGG - chr1_1:66611136-66611155 Msa0037570:intron 15.0%
!!! GTTCATTTTATATACAAAAT+GGG - chr1_1:66611137-66611156 Msa0037570:intron 15.0%
!! ATGTTATGTTATGTTATGTT+AGG - chr1_1:66607289-66607308 Msa0037570:CDS 20.0%
!! TGTTATGTTATGTTATGTTA+GGG - chr1_1:66607290-66607309 Msa0037570:CDS 20.0%
!!! ATTAATTAGGGTTTTGATTT+TGG - chr1_1:66607325-66607344 Msa0037570:CDS 20.0%
!! TAAAAGGGTTATACTAATTA+CGG - chr1_1:66608057-66608076 Msa0037570:intron 20.0%
!! GAACAGTATTATTTAAAAAC+TGG - chr1_1:66608092-66608111 Msa0037570:intron 20.0%
!! AATTCTCTGTAAATTACATA+AGG + chr1_1:66608249-66608268 None:intergenic 20.0%
!!! TTTACAGAGAATTTTTCATA+TGG - chr1_1:66608256-66608275 Msa0037570:intron 20.0%
!!! TATATATGTGATCTGAAATA+TGG - chr1_1:66608626-66608645 Msa0037570:intron 20.0%
!!! CAAATCTCCTTTTAAAAAAA+GGG - chr1_1:66609210-66609229 Msa0037570:intron 20.0%
!! CAAATAAACACATTAATAGT+TGG + chr1_1:66609525-66609544 None:intergenic 20.0%
!! CAACTATTAATGTGTTTATT+TGG - chr1_1:66609523-66609542 Msa0037570:intron 20.0%
!! TAATATCACGTTCATTAAAA+AGG + chr1_1:66610469-66610488 None:intergenic 20.0%
!! TTAACTATCAATTCTGAATT+AGG + chr1_1:66610618-66610637 None:intergenic 20.0%
!!! ATTACTTCGTAAGTAAATTT+TGG - chr1_1:66610809-66610828 Msa0037570:intron 20.0%
!!! TAATCTAAAGCTACTTAATA+TGG + chr1_1:66610960-66610979 None:intergenic 20.0%
!!! TTTGTTTGGGTTTCTTTTTT+AGG + chr1_1:66607138-66607157 None:intergenic 25.0%
! AAAAGAAACCCAAACAAAAA+TGG - chr1_1:66607140-66607159 Msa0037570:three_prime_UTR 25.0%
! CTCATATAATAAGCACAATT+CGG + chr1_1:66607432-66607451 None:intergenic 25.0%
! TGCATAAACCTATATTAGTA+AGG - chr1_1:66607804-66607823 Msa0037570:intron 25.0%
!!! CCTTTTTTCCTTACTAATAT+AGG + chr1_1:66607815-66607834 None:intergenic 25.0%
! CCTATATTAGTAAGGAAAAA+AGG - chr1_1:66607812-66607831 Msa0037570:intron 25.0%
! AAACAAAATTATACCTGACA+TGG + chr1_1:66607984-66608003 None:intergenic 25.0%
! AAAAGGGTTATACTAATTAC+GGG - chr1_1:66608058-66608077 Msa0037570:intron 25.0%
! ATATGGTTAAACTTAAACCA+TGG - chr1_1:66608273-66608292 Msa0037570:intron 25.0%
!! TGATGATTTTAAATTAGTGC+AGG - chr1_1:66608696-66608715 Msa0037570:intron 25.0%
!!! TAAACTATAAGAAGTACTGA+TGG + chr1_1:66609185-66609204 None:intergenic 25.0%
! ATCAGTACTTCTTATAGTTT+AGG - chr1_1:66609184-66609203 Msa0037570:intron 25.0%
!!! CCTTTTTTTAAAAGGAGATT+TGG + chr1_1:66609212-66609231 None:intergenic 25.0%
!!! CCAAATCTCCTTTTAAAAAA+AGG - chr1_1:66609209-66609228 Msa0037570:intron 25.0%
!!! TTTGGTTCCCTTTTTTTAAA+AGG + chr1_1:66609220-66609239 None:intergenic 25.0%
! CTTAAAAACCATGTTATCAA+GGG + chr1_1:66609441-66609460 None:intergenic 25.0%
! TCTTAAAAACCATGTTATCA+AGG + chr1_1:66609442-66609461 None:intergenic 25.0%
! TAGAGTTAGTTAAATCTTAG+CGG - chr1_1:66610060-66610079 Msa0037570:intron 25.0%
!! TGTCTGTTTATTCTGAAAAA+TGG - chr1_1:66610280-66610299 Msa0037570:CDS 25.0%
!! GTCTGTTTATTCTGAAAAAT+GGG - chr1_1:66610281-66610300 Msa0037570:CDS 25.0%
!! TCTGTTTATTCTGAAAAATG+GGG - chr1_1:66610282-66610301 Msa0037570:CDS 25.0%
! TACATCACTACATTGAAATT+TGG + chr1_1:66610660-66610679 None:intergenic 25.0%
!!! TTAATTTGTGTGCATTCTTT+TGG - chr1_1:66611065-66611084 Msa0037570:intron 25.0%
!!! TAATTTGTGTGCATTCTTTT+GGG - chr1_1:66611066-66611085 Msa0037570:intron 25.0%
! TGAAAAAATTAAACCAACAG+AGG + chr1_1:66611386-66611405 None:intergenic 25.0%
!!! GTTGGTTTAATTTTTTCACA+AGG - chr1_1:66611388-66611407 Msa0037570:intron 25.0%
!!! GTTTAATTTTTTCACAAGGT+GGG - chr1_1:66611392-66611411 Msa0037570:intron 25.0%
! TAAGATGATTATGTTTAGAC+AGG - chr1_1:66611770-66611789 Msa0037570:intron 25.0%
! AAGATGATTATGTTTAGACA+GGG - chr1_1:66611771-66611790 Msa0037570:intron 25.0%
! TAGAATGATCTAGAATGTTC+TGG + chr1_1:66607066-66607085 None:intergenic 30.0%
!! GTACAAGTCCATTTTTGTTT+GGG + chr1_1:66607151-66607170 None:intergenic 30.0%
! CAAACAAAAATGGACTTGTA+CGG - chr1_1:66607150-66607169 Msa0037570:three_prime_UTR 30.0%
!!! AATTAGGGTTTTGATTTTGG+TGG - chr1_1:66607328-66607347 Msa0037570:CDS 30.0%
TGTGCTTATTATATGAGAAC+CGG - chr1_1:66607435-66607454 Msa0037570:CDS 30.0%
AATGCAGATAACTAAAAACG+AGG + chr1_1:66607528-66607547 None:intergenic 30.0%
AGGAATAAAATTAACCATCC+AGG + chr1_1:66607612-66607631 None:intergenic 30.0%
! TCAGTGATATACATTTGCTA+AGG - chr1_1:66607728-66607747 Msa0037570:intron 30.0%
! CAGTGATATACATTTGCTAA+GGG - chr1_1:66607729-66607748 Msa0037570:intron 30.0%
! TAAGTGATGTACATTTGCTA+AGG - chr1_1:66607868-66607887 Msa0037570:intron 30.0%
! AAGTGATGTACATTTGCTAA+GGG - chr1_1:66607869-66607888 Msa0037570:intron 30.0%
! AACTGACTCAAATATTGTTC+AGG - chr1_1:66607905-66607924 Msa0037570:intron 30.0%
AAAACTGGAACCTGTAAATT+TGG - chr1_1:66608107-66608126 Msa0037570:intron 30.0%
CATAAATATTTAGTGGAGCT+TGG + chr1_1:66608181-66608200 None:intergenic 30.0%
CAAGCTCCACTAAATATTTA+TGG - chr1_1:66608179-66608198 Msa0037570:intron 30.0%
GGGTATCCATAAATATTTAG+TGG + chr1_1:66608188-66608207 None:intergenic 30.0%
!! CATGGATTTTGTTTAACACA+GGG - chr1_1:66608291-66608310 Msa0037570:intron 30.0%
GTGCTCCTATTATTTGAAAA+CGG - chr1_1:66608323-66608342 Msa0037570:intron 30.0%
TGCTCCTATTATTTGAAAAC+GGG - chr1_1:66608324-66608343 Msa0037570:intron 30.0%
! ATATGTGATCTGAAATATGG+CGG - chr1_1:66608629-66608648 Msa0037570:intron 30.0%
AATTGAGATACCATTCATAC+CGG + chr1_1:66609030-66609049 None:intergenic 30.0%
GTATGAATGGTATCTCAATT+TGG - chr1_1:66609030-66609049 Msa0037570:intron 30.0%
GTTTAGACTAACAACAGATT+TGG + chr1_1:66609238-66609257 None:intergenic 30.0%
GTTCTTCAATTTATGAGACT+AGG + chr1_1:66609660-66609679 None:intergenic 30.0%
AATGAAAGCGGAATAGATAT+GGG + chr1_1:66609703-66609722 None:intergenic 30.0%
AAATGAAAGCGGAATAGATA+TGG + chr1_1:66609704-66609723 None:intergenic 30.0%
CTCAGAATATCAAATGAAAG+CGG + chr1_1:66609715-66609734 None:intergenic 30.0%
!!! CTTGTGACTTTGTTTTAAGA+TGG - chr1_1:66609829-66609848 Msa0037570:CDS 30.0%
GTTGTAATTCATGAAAGACA+TGG + chr1_1:66610003-66610022 None:intergenic 30.0%
! CTGTTTATTCTGAAAAATGG+GGG - chr1_1:66610283-66610302 Msa0037570:CDS 30.0%
AAGGAAATAGATTGAATAGC+AGG + chr1_1:66610450-66610469 None:intergenic 30.0%
TTCTAAGTGTCTGTAAAACA+AGG - chr1_1:66610498-66610517 Msa0037570:CDS 30.0%
TTTGAATGCTTCTTTATCTC+AGG - chr1_1:66610573-66610592 Msa0037570:CDS 30.0%
! AATTAGGTTTTGCTAACCTT+GGG + chr1_1:66610602-66610621 None:intergenic 30.0%
! TTTGGAGTTGTAAACTGAAA+AGG + chr1_1:66610642-66610661 None:intergenic 30.0%
AAAGAATGGAAACTACGATA+CGG + chr1_1:66610706-66610725 None:intergenic 30.0%
AAGCACAACTTAAGAAAGAA+TGG + chr1_1:66610720-66610739 None:intergenic 30.0%
!!! TCGTAAGTAAATTTTGGTTG+CGG - chr1_1:66610815-66610834 Msa0037570:intron 30.0%
TCATACGCATCATAAATGAA+AGG + chr1_1:66611010-66611029 None:intergenic 30.0%
CTTCAACATCTTCAGAATTT+CGG - chr1_1:66611293-66611312 Msa0037570:CDS 30.0%
!!! GGTTTAATTTTTTCACAAGG+TGG - chr1_1:66611391-66611410 Msa0037570:intron 30.0%
!! TTGGGTGACAAATTTTTCAA+TGG + chr1_1:66611622-66611641 None:intergenic 30.0%
CTTCATACTATTATGCTTTG+TGG - chr1_1:66611733-66611752 Msa0037570:five_prime_UTR 30.0%
GAGAGAGACAGAAAGAAAAT+GGG + chr1_1:66606994-66607013 None:intergenic 35.0%
!! TCTAGAATGTTCTGGAAGAT+CGG + chr1_1:66607058-66607077 None:intergenic 35.0%
GTGTTTACGAGAAAGGAAAA+TGG + chr1_1:66607105-66607124 None:intergenic 35.0%
!! CGTACAAGTCCATTTTTGTT+TGG + chr1_1:66607152-66607171 None:intergenic 35.0%
GTGCTTATTATATGAGAACC+GGG - chr1_1:66607436-66607455 Msa0037570:CDS 35.0%
!!! TAGTAGATGCTATTTTTGCC+TGG - chr1_1:66607591-66607610 Msa0037570:intron 35.0%
CAAAATTATACCTGACATGG+AGG + chr1_1:66607981-66608000 None:intergenic 35.0%
AAATTCCACCATCCCAAAAA+TGG - chr1_1:66608140-66608159 Msa0037570:intron 35.0%
!! AAATATCCCCCTCCATTTTT+GGG + chr1_1:66608155-66608174 None:intergenic 35.0%
! TAAATATCCCCCTCCATTTT+TGG + chr1_1:66608156-66608175 None:intergenic 35.0%
AAGAAAAAGAAGAGTCGAAC+CGG + chr1_1:66608218-66608237 None:intergenic 35.0%
CCTGTGTTAAACAAAATCCA+TGG + chr1_1:66608293-66608312 None:intergenic 35.0%
!! CCATGGATTTTGTTTAACAC+AGG - chr1_1:66608290-66608309 Msa0037570:intron 35.0%
GCTCCTATTATTTGAAAACG+GGG - chr1_1:66608325-66608344 Msa0037570:intron 35.0%
! TGCACCTCAATTTTATCAAC+AGG - chr1_1:66608416-66608435 Msa0037570:intron 35.0%
! TGCACCTGTTGATAAAATTG+AGG + chr1_1:66608423-66608442 None:intergenic 35.0%
TATGTGTCTCTTACCGAATA+AGG + chr1_1:66608600-66608619 None:intergenic 35.0%
! AAAGTATTTCCTGAAAGACC+CGG - chr1_1:66608877-66608896 Msa0037570:intron 35.0%
TGCCAATACTATATGAGAAC+TGG - chr1_1:66608910-66608929 Msa0037570:intron 35.0%
GCCAATACTATATGAGAACT+GGG - chr1_1:66608911-66608930 Msa0037570:intron 35.0%
CCAATACTATATGAGAACTG+GGG - chr1_1:66608912-66608931 Msa0037570:intron 35.0%
ATTGAGATACCATTCATACC+GGG + chr1_1:66609029-66609048 None:intergenic 35.0%
ATGTATTCTATTCAGGAGTC+AGG - chr1_1:66609154-66609173 Msa0037570:intron 35.0%
! TTTTTGCAAAACTGCAGAGT+TGG - chr1_1:66609415-66609434 Msa0037570:intron 35.0%
AAGATTGTGATATTCCTCGT+AGG - chr1_1:66609458-66609477 Msa0037570:intron 35.0%
CATTTCAGTGGCAATCTATT+AGG + chr1_1:66609602-66609621 None:intergenic 35.0%
CTAATAGATTGCCACTGAAA+TGG - chr1_1:66609600-66609619 Msa0037570:intron 35.0%
ATGAAAGCGGAATAGATATG+GGG + chr1_1:66609702-66609721 None:intergenic 35.0%
AGCTAAGAAAAAGATTGGAG+GGG + chr1_1:66609751-66609770 None:intergenic 35.0%
GAGCTAAGAAAAAGATTGGA+GGG + chr1_1:66609752-66609771 None:intergenic 35.0%
GATGGAGCTAAGAAAAAGAT+TGG + chr1_1:66609756-66609775 None:intergenic 35.0%
! TTTTCTTAGCTCCATCATGT+CGG - chr1_1:66609760-66609779 Msa0037570:CDS 35.0%
CAAAGCAAAGAAAACAGTGT+GGG + chr1_1:66609931-66609950 None:intergenic 35.0%
ACAAAGCAAAGAAAACAGTG+TGG + chr1_1:66609932-66609951 None:intergenic 35.0%
TCAAAATTGAGATCCTTCCT+AGG + chr1_1:66610169-66610188 None:intergenic 35.0%
ATTCCTTGATGGAACATGAT+TGG - chr1_1:66610201-66610220 Msa0037570:CDS 35.0%
!! ATTGGCTTTCTGTATCTATC+CGG - chr1_1:66610219-66610238 Msa0037570:CDS 35.0%
GGATACATGGATCAAACTTA+TGG - chr1_1:66610304-66610323 Msa0037570:CDS 35.0%
GGATCAAACTTATGGTTACT+TGG - chr1_1:66610312-66610331 Msa0037570:CDS 35.0%
TCATCCAATAACTTGAGCTT+AGG + chr1_1:66610381-66610400 None:intergenic 35.0%
ATTGGATGAATGCACATGAT+TGG - chr1_1:66610392-66610411 Msa0037570:intron 35.0%
! TAGCTTGTGAGTATCTTATG+TGG - chr1_1:66610542-66610561 Msa0037570:CDS 35.0%
AGCTTGTGAGTATCTTATGT+GGG - chr1_1:66610543-66610562 Msa0037570:CDS 35.0%
! GAATTAGGTTTTGCTAACCT+TGG + chr1_1:66610603-66610622 None:intergenic 35.0%
! TTCTTAAGTTGTGCTTTGCT+TGG - chr1_1:66610724-66610743 Msa0037570:CDS 35.0%
TCAATAAGAGAAGATGCTGA+TGG + chr1_1:66611223-66611242 None:intergenic 35.0%
TAGATAGTAAAGACCCAACT+GGG + chr1_1:66611264-66611283 None:intergenic 35.0%
TTAGATAGTAAAGACCCAAC+TGG + chr1_1:66611265-66611284 None:intergenic 35.0%
! CGAAATTCTGAAGATGTTGA+AGG + chr1_1:66611295-66611314 None:intergenic 35.0%
ATTTCCAGATGAATGCATTC+TGG + chr1_1:66611353-66611372 None:intergenic 35.0%
AGAATGCATTCATCTGGAAA+TGG - chr1_1:66611352-66611371 Msa0037570:intron 35.0%
ATGCTCCTCTCAGTATTTAA+TGG - chr1_1:66611573-66611592 Msa0037570:five_prime_UTR 35.0%
AGTTGCCATTAAATACTGAG+AGG + chr1_1:66611581-66611600 None:intergenic 35.0%
AAGCATAAAAGAGAATGACC+TGG + chr1_1:66611668-66611687 None:intergenic 35.0%
AAAGAGAGTTAGCGATTTAG+AGG - chr1_1:66611821-66611840 Msa0037570:five_prime_UTR 35.0%
AAGAGAGTTAGCGATTTAGA+GGG - chr1_1:66611822-66611841 Msa0037570:five_prime_UTR 35.0%
! TCTTTTTCTCTCTCTCTCTC+TGG + chr1_1:66606890-66606909 None:intergenic 40.0%
CGAGAGAGACAGAAAGAAAA+TGG + chr1_1:66606995-66607014 None:intergenic 40.0%
CTGTACAGTGTTTACGAGAA+AGG + chr1_1:66607112-66607131 None:intergenic 40.0%
CTTTCTCGTAAACACTGTAC+AGG - chr1_1:66607110-66607129 Msa0037570:three_prime_UTR 40.0%
! CAAAAATGGACTTGTACGGT+CGG - chr1_1:66607154-66607173 Msa0037570:three_prime_UTR 40.0%
! TTCATGTTGATTAAGCGGGT+TGG + chr1_1:66607199-66607218 None:intergenic 40.0%
ACCCGCTTAATCAACATGAA+TGG - chr1_1:66607199-66607218 Msa0037570:exon 40.0%
! GCCATTCATGTTGATTAAGC+GGG + chr1_1:66607203-66607222 None:intergenic 40.0%
! CGCCATTCATGTTGATTAAG+CGG + chr1_1:66607204-66607223 None:intergenic 40.0%
GTTTATGTTCAGAGTCGATG+TGG - chr1_1:66607352-66607371 Msa0037570:CDS 40.0%
TCGATGTGGCATTTATCACT+TGG - chr1_1:66607366-66607385 Msa0037570:CDS 40.0%
ATGTGGCATTTATCACTTGG+TGG - chr1_1:66607369-66607388 Msa0037570:CDS 40.0%
! TATATGAGAACCGGGTTTTG+TGG - chr1_1:66607444-66607463 Msa0037570:CDS 40.0%
!!! AGATGCTATTTTTGCCTGGA+TGG - chr1_1:66607595-66607614 Msa0037570:intron 40.0%
TTATGGATACCCATTACGAC+CGG - chr1_1:66608196-66608215 Msa0037570:intron 40.0%
! CTGCCCCGTTTTCAAATAAT+AGG + chr1_1:66608331-66608350 None:intergenic 40.0%
TAAAATTGAGGTGCAGATGC+TGG + chr1_1:66608411-66608430 None:intergenic 40.0%
TTACCCGGTTCATATGTACA+AGG - chr1_1:66608519-66608538 Msa0037570:intron 40.0%
TACCCGGTTCATATGTACAA+GGG - chr1_1:66608520-66608539 Msa0037570:intron 40.0%
TCATATGTACAAGGGGCTTA+TGG - chr1_1:66608528-66608547 Msa0037570:intron 40.0%
!! CTCATATAGTATTGGCAGAC+CGG + chr1_1:66608907-66608926 None:intergenic 40.0%
CCCCAGTTCTCATATAGTAT+TGG + chr1_1:66608915-66608934 None:intergenic 40.0%
AGAACTGGGGACTGTAAATT+TGG - chr1_1:66608925-66608944 Msa0037570:intron 40.0%
GTGCGTACATGTATTATGTG+TGG - chr1_1:66609488-66609507 Msa0037570:intron 40.0%
ACCAGGTTAGTGTGTATACT+TGG + chr1_1:66609553-66609572 None:intergenic 40.0%
GTATACACACTAACCTGGTT+TGG - chr1_1:66609554-66609573 Msa0037570:intron 40.0%
ATAGATTGCCACTGAAATGG+CGG - chr1_1:66609603-66609622 Msa0037570:intron 40.0%
! AAAGTTTTCCGCCATTTCAG+TGG + chr1_1:66609614-66609633 None:intergenic 40.0%
ATTGAAGAACCCCATCCTTA+TGG - chr1_1:66609670-66609689 Msa0037570:intron 40.0%
GGAGCTAAGAAAAAGATTGG+AGG + chr1_1:66609753-66609772 None:intergenic 40.0%
AAGATGAAACACCCACAAAG+GGG + chr1_1:66609812-66609831 None:intergenic 40.0%
CAAGATGAAACACCCACAAA+GGG + chr1_1:66609813-66609832 None:intergenic 40.0%
ACAAGATGAAACACCCACAA+AGG + chr1_1:66609814-66609833 None:intergenic 40.0%
TGAACTCAACACCGTATCTT+TGG - chr1_1:66609853-66609872 Msa0037570:CDS 40.0%
ATGGGTCTTGACCAAAGATA+CGG + chr1_1:66609867-66609886 None:intergenic 40.0%
ATCTTTGGTCAAGACCCATA+AGG - chr1_1:66609868-66609887 Msa0037570:CDS 40.0%
GAGAAACAGGTAGTCCTTAT+GGG + chr1_1:66609885-66609904 None:intergenic 40.0%
TGAGAAACAGGTAGTCCTTA+TGG + chr1_1:66609886-66609905 None:intergenic 40.0%
! ACTACCTGTTTCTCACTGTT+GGG - chr1_1:66609891-66609910 Msa0037570:CDS 40.0%
TTCTCTTCCCAATTGATCCT+AGG - chr1_1:66610149-66610168 Msa0037570:CDS 40.0%
GATCCTTCCTAGGATCAATT+GGG + chr1_1:66610159-66610178 None:intergenic 40.0%
AGATCCTTCCTAGGATCAAT+TGG + chr1_1:66610160-66610179 None:intergenic 40.0%
AACCTTGCTTGATTCCTTGA+TGG - chr1_1:66610190-66610209 Msa0037570:CDS 40.0%
TTCCATCAAGGAATCAAGCA+AGG + chr1_1:66610195-66610214 None:intergenic 40.0%
AAGCCAATCATGTTCCATCA+AGG + chr1_1:66610207-66610226 None:intergenic 40.0%
!! AGACCCAAGCTTTTGTTTGA+GGG + chr1_1:66610247-66610266 None:intergenic 40.0%
TCTGAAAAATGGGGGATACA+TGG - chr1_1:66610291-66610310 Msa0037570:CDS 40.0%
TAACTTGAGCTTAGGAGAGT+TGG + chr1_1:66610373-66610392 None:intergenic 40.0%
CTCTCCTAAGCTCAAGTTAT+TGG - chr1_1:66610374-66610393 Msa0037570:CDS 40.0%
TCTTTATCTCAGGAAACCCA+AGG - chr1_1:66610583-66610602 Msa0037570:CDS 40.0%
TAAGTTGTGCTTTGCTTGGT+TGG - chr1_1:66610728-66610747 Msa0037570:CDS 40.0%
ATCAAAAGTCCCCTGTAAGA+GGG + chr1_1:66610854-66610873 None:intergenic 40.0%
ATGCAAGTTTGATCATCCTG+CGG - chr1_1:66611180-66611199 Msa0037570:intron 40.0%
TGGGTCTTTACTATCTAACC+TGG - chr1_1:66611267-66611286 Msa0037570:CDS 40.0%
CATTCATCTGGAAATGGTTC+TGG - chr1_1:66611358-66611377 Msa0037570:intron 40.0%
CAGAGTTCTGCTTCTTTGAA+CGG - chr1_1:66611448-66611467 Msa0037570:intron 40.0%
AGCACACAAGAATCACGATT+GGG + chr1_1:66611640-66611659 None:intergenic 40.0%
TAGCACACAAGAATCACGAT+TGG + chr1_1:66611641-66611660 None:intergenic 40.0%
ATTCTTGTGTGCTATACACC+AGG - chr1_1:66611647-66611666 Msa0037570:five_prime_UTR 40.0%
TATGCTTTGTGGACTTATGC+TGG - chr1_1:66611744-66611763 Msa0037570:five_prime_UTR 40.0%
TTTCTTCCTGCTCTGTACAA+AGG - chr1_1:66611797-66611816 Msa0037570:five_prime_UTR 40.0%
TCTTTACCTTTGTACAGAGC+AGG + chr1_1:66611806-66611825 None:intergenic 40.0%
! CTCTCTCTCTGGAAACTGTA+CGG + chr1_1:66606879-66606898 None:intergenic 45.0%
! TGGCATTTATCACTTGGTGG+TGG - chr1_1:66607372-66607391 Msa0037570:CDS 45.0%
!! CATTTATCACTTGGTGGTGG+TGG - chr1_1:66607375-66607394 Msa0037570:CDS 45.0%
! TGGTGGTGTTGAATCTTACC+CGG - chr1_1:66607392-66607411 Msa0037570:CDS 45.0%
!! AGAACCGGGTTTTGTGGATA+TGG - chr1_1:66607450-66607469 Msa0037570:CDS 45.0%
TCCACCATATCCACAAAACC+CGG + chr1_1:66607457-66607476 None:intergenic 45.0%
!! GGTTTTGTGGATATGGTGGA+AGG - chr1_1:66607457-66607476 Msa0037570:CDS 45.0%
ACAAGACGCGCCAAATTTAC+AGG + chr1_1:66608120-66608139 None:intergenic 45.0%
TTCCACCATCCCAAAAATGG+AGG - chr1_1:66608143-66608162 Msa0037570:intron 45.0%
TCCACCATCCCAAAAATGGA+GGG - chr1_1:66608144-66608163 Msa0037570:intron 45.0%
AAAACGGGGCAGTGCAAATT+TGG - chr1_1:66608339-66608358 Msa0037570:intron 45.0%
ACATATGAACCGGGTAACAC+AGG + chr1_1:66608516-66608535 None:intergenic 45.0%
ACCCGGTTCATATGTACAAG+GGG - chr1_1:66608521-66608540 Msa0037570:intron 45.0%
AGCCCCTTGTACATATGAAC+CGG + chr1_1:66608526-66608545 None:intergenic 45.0%
TAAGGACTCCATCCAGGAAA+TGG + chr1_1:66608582-66608601 None:intergenic 45.0%
TCCTGGATGGAGTCCTTATT+CGG - chr1_1:66608584-66608603 Msa0037570:intron 45.0%
GTTGGGGCTACTTCTCTTTA+CGG - chr1_1:66608760-66608779 Msa0037570:intron 45.0%
CCTGTCGATATCATCATCCA+CGG - chr1_1:66608953-66608972 Msa0037570:intron 45.0%
CTGTCGATATCATCATCCAC+GGG - chr1_1:66608954-66608973 Msa0037570:intron 45.0%
AGACCAAAGGGACTAAGAAG+TGG + chr1_1:66608997-66609016 None:intergenic 45.0%
AACAAGTTAGACACCAGGCA+GGG + chr1_1:66609293-66609312 None:intergenic 45.0%
!! ACAGCTGGCTTTAGTTGCAT+TGG - chr1_1:66609350-66609369 Msa0037570:intron 45.0%
!! CAGCTGGCTTTAGTTGCATT+GGG - chr1_1:66609351-66609370 Msa0037570:intron 45.0%
!! AGCTGGCTTTAGTTGCATTG+GGG - chr1_1:66609352-66609371 Msa0037570:intron 45.0%
! AGAGTTGGCCCTTGATAACA+TGG - chr1_1:66609430-66609449 Msa0037570:intron 45.0%
GCCAAGTATACACACTAACC+TGG - chr1_1:66609549-66609568 Msa0037570:intron 45.0%
TACAGCAATCTCACCAAACC+AGG + chr1_1:66609570-66609589 None:intergenic 45.0%
!! TGGTTTGGTGAGATTGCTGT+AGG - chr1_1:66609569-66609588 Msa0037570:intron 45.0%
GATATGGGGAAACAGCCATA+AGG + chr1_1:66609688-66609707 None:intergenic 45.0%
! TTTTAGCACCACCGACATGA+TGG + chr1_1:66609774-66609793 None:intergenic 45.0%
! GTGGTGCTAAAACTCTGCAT+TGG - chr1_1:66609782-66609801 Msa0037570:CDS 45.0%
! GACTACCTGTTTCTCACTGT+TGG - chr1_1:66609890-66609909 Msa0037570:CDS 45.0%
AGTTCCCAACAGTGAGAAAC+AGG + chr1_1:66609898-66609917 None:intergenic 45.0%
GTTTCTCACTGTTGGGAACT+TGG - chr1_1:66609898-66609917 Msa0037570:CDS 45.0%
CTTCCCAATTGATCCTAGGA+AGG - chr1_1:66610153-66610172 Msa0037570:CDS 45.0%
!! AAGCTTTTGTTTGAGGGAGC+CGG + chr1_1:66610241-66610260 None:intergenic 45.0%
GCTCCCTCAAACAAAAGCTT+GGG - chr1_1:66610241-66610260 Msa0037570:CDS 45.0%
!! CAGACCCAAGCTTTTGTTTG+AGG + chr1_1:66610248-66610267 None:intergenic 45.0%
GAAGCCATGATACCATGTCA+AGG - chr1_1:66610346-66610365 Msa0037570:CDS 45.0%
TGGTCCTTGACATGGTATCA+TGG + chr1_1:66610353-66610372 None:intergenic 45.0%
!! TTGGTGTCATAGCATGGTTG+AGG - chr1_1:66610747-66610766 Msa0037570:CDS 45.0%
!! TGGTGTCATAGCATGGTTGA+GGG - chr1_1:66610748-66610767 Msa0037570:CDS 45.0%
GGTTGAGGGGATATGAAACA+TGG - chr1_1:66610762-66610781 Msa0037570:CDS 45.0%
TGGCTACAACAAAAGCGATG+TGG - chr1_1:66610782-66610801 Msa0037570:intron 45.0%
!! ATCGTTTTTGCCCCTCTTAC+AGG - chr1_1:66610840-66610859 Msa0037570:intron 45.0%
!! TCGTTTTTGCCCCTCTTACA+GGG - chr1_1:66610841-66610860 Msa0037570:intron 45.0%
TCAAAAGTCCCCTGTAAGAG+GGG + chr1_1:66610853-66610872 None:intergenic 45.0%
CATCAAAAGTCCCCTGTAAG+AGG + chr1_1:66610855-66610874 None:intergenic 45.0%
! CTCTTACAGGGGACTTTTGA+TGG - chr1_1:66610853-66610872 Msa0037570:intron 45.0%
! CAAAATGGGCACTGCAAGTT+TGG - chr1_1:66611151-66611170 Msa0037570:intron 45.0%
TGCAAGTTTGATCATCCTGC+GGG - chr1_1:66611181-66611200 Msa0037570:intron 45.0%
AGTAAAGACCCAACTGGGTA+TGG + chr1_1:66611259-66611278 None:intergenic 45.0%
CTGAAGATGTTGAAGGAACC+AGG + chr1_1:66611288-66611307 None:intergenic 45.0%
TTGGATCCTGACTTCAGTTC+AGG + chr1_1:66611319-66611338 None:intergenic 45.0%
!! AATGGTTCTGGTACCTCTGT+TGG - chr1_1:66611370-66611389 Msa0037570:intron 45.0%
CGTTCAAAGAAGCAGAACTC+TGG + chr1_1:66611450-66611469 None:intergenic 45.0%
AGCATGAACAGAAGCAATGG+TGG + chr1_1:66611558-66611577 None:intergenic 45.0%
! AGGAGCATGAACAGAAGCAA+TGG + chr1_1:66611561-66611580 None:intergenic 45.0%
!!! ATTTTGTAATTTATTAATTA+GGG - chr1_1:66607313-66607332 Msa0037570:CDS 5.0%
!! TATATTTACTATTTAATAAA+AGG - chr1_1:66608041-66608060 Msa0037570:intron 5.0%
!! ATATTTACTATTTAATAAAA+GGG - chr1_1:66608042-66608061 Msa0037570:intron 5.0%
CACACGAACGAGAGAACACA+AGG - chr1_1:66606950-66606969 Msa0037570:three_prime_UTR 50.0%
!! GGTTGGATCCGTTTCTAGTG+GGG + chr1_1:66607182-66607201 None:intergenic 50.0%
!! GGGTTGGATCCGTTTCTAGT+GGG + chr1_1:66607183-66607202 None:intergenic 50.0%
GAATCTTACCCGGAGAGACA+TGG - chr1_1:66607402-66607421 Msa0037570:CDS 50.0%
TTCGGTACACCATGTCTCTC+CGG + chr1_1:66607414-66607433 None:intergenic 50.0%
!! ACCGGGTTTTGTGGATATGG+TGG - chr1_1:66607453-66607472 Msa0037570:CDS 50.0%
GATCACGCGGGTGATTGAAA+CGG + chr1_1:66607485-66607504 None:intergenic 50.0%
CTGCTGCAGTAAGAGCTACA+GGG - chr1_1:66607931-66607950 Msa0037570:intron 50.0%
TGCTGCAGTAAGAGCTACAG+GGG - chr1_1:66607932-66607951 Msa0037570:intron 50.0%
CCACCATCCCAAAAATGGAG+GGG - chr1_1:66608145-66608164 Msa0037570:intron 50.0%
CACCATCCCAAAAATGGAGG+GGG - chr1_1:66608146-66608165 Msa0037570:intron 50.0%
!! ATCCCCCTCCATTTTTGGGA+TGG + chr1_1:66608151-66608170 None:intergenic 50.0%
AGAGTCGAACCGGTCGTAAT+GGG + chr1_1:66608208-66608227 None:intergenic 50.0%
AAGAGTCGAACCGGTCGTAA+TGG + chr1_1:66608209-66608228 None:intergenic 50.0%
! AATGAAGTGCCAGCAGGTTG+AGG + chr1_1:66608387-66608406 None:intergenic 50.0%
TCAACAGGTGCAGTCTCCAA+CGG - chr1_1:66608431-66608450 Msa0037570:intron 50.0%
GAAGCTCCTCCAAACTGTTC+CGG + chr1_1:66608468-66608487 None:intergenic 50.0%
AGCTTCTGCAAGTGTGAGAG+TGG - chr1_1:66608482-66608501 Msa0037570:intron 50.0%
TATGAACCGGGTAACACAGG+AGG + chr1_1:66608513-66608532 None:intergenic 50.0%
GCCCCTTGTACATATGAACC+GGG + chr1_1:66608525-66608544 None:intergenic 50.0%
AGGAAATGGAACAACCCCTG+GGG + chr1_1:66608568-66608587 None:intergenic 50.0%
CAGGAAATGGAACAACCCCT+GGG + chr1_1:66608569-66608588 None:intergenic 50.0%
GGGTTGTTCCATTTCCTGGA+TGG - chr1_1:66608571-66608590 Msa0037570:intron 50.0%
ACCGAATAAGGACTCCATCC+AGG + chr1_1:66608588-66608607 None:intergenic 50.0%
GGAGATAACACAGGGCTTAC+AGG + chr1_1:66608724-66608743 None:intergenic 50.0%
GTAAGCCCTGTGTTATCTCC+TGG - chr1_1:66608724-66608743 Msa0037570:intron 50.0%
! GAAGAGGGCAGAGGAGTATA+AGG + chr1_1:66608826-66608845 None:intergenic 50.0%
CCTGAAGTGTGTTTCCTCCA+GGG + chr1_1:66608855-66608874 None:intergenic 50.0%
TCCTGAAGTGTGTTTCCTCC+AGG + chr1_1:66608856-66608875 None:intergenic 50.0%
CCGTGGATGATGATATCGAC+AGG + chr1_1:66608956-66608975 None:intergenic 50.0%
ATATCATCATCCACGGGACC+AGG - chr1_1:66608960-66608979 Msa0037570:intron 50.0%
CGACCACTTCTTAGTCCCTT+TGG - chr1_1:66608991-66609010 Msa0037570:intron 50.0%
TTAAGACCAATGTCCCTGCC+TGG - chr1_1:66609277-66609296 Msa0037570:intron 50.0%
CAACAAGTTAGACACCAGGC+AGG + chr1_1:66609294-66609313 None:intergenic 50.0%
CAGGCAACAAGTTAGACACC+AGG + chr1_1:66609298-66609317 None:intergenic 50.0%
AATGCAACTAAAGCCAGCGC+AGG + chr1_1:66609317-66609336 None:intergenic 50.0%
!! TGCGCTGGCTTTAGTTGCAT+TGG - chr1_1:66609316-66609335 Msa0037570:intron 50.0%
!! GCGCTGGCTTTAGTTGCATT+GGG - chr1_1:66609317-66609336 Msa0037570:intron 50.0%
!! CGCTGGCTTTAGTTGCATTG+GGG - chr1_1:66609318-66609337 Msa0037570:intron 50.0%
TTGGGGTCAAAGTAGACAGC+TGG - chr1_1:66609335-66609354 Msa0037570:intron 50.0%
TACGCACGAGTAATCCTACG+AGG + chr1_1:66609475-66609494 None:intergenic 50.0%
GGGAAACAGCCATAAGGATG+GGG + chr1_1:66609682-66609701 None:intergenic 50.0%
GGGGAAACAGCCATAAGGAT+GGG + chr1_1:66609683-66609702 None:intergenic 50.0%
TGGGGAAACAGCCATAAGGA+TGG + chr1_1:66609684-66609703 None:intergenic 50.0%
TCTTAGCTCCATCATGTCGG+TGG - chr1_1:66609763-66609782 Msa0037570:CDS 50.0%
TGCATTGGAGTTCCCCTTTG+TGG - chr1_1:66609797-66609816 Msa0037570:CDS 50.0%
GCATTGGAGTTCCCCTTTGT+GGG - chr1_1:66609798-66609817 Msa0037570:CDS 50.0%
GGCTCCCTCAAACAAAAGCT+TGG - chr1_1:66610240-66610259 Msa0037570:CDS 50.0%
! AGGAGAGTTGGTCCTTGACA+TGG + chr1_1:66610361-66610380 None:intergenic 50.0%
!! GCTTGGTTGGTGTCATAGCA+TGG - chr1_1:66610741-66610760 Msa0037570:CDS 50.0%
! GGTGTCATAGCATGGTTGAG+GGG - chr1_1:66610749-66610768 Msa0037570:CDS 50.0%
! CGTTTTTGCCCCTCTTACAG+GGG - chr1_1:66610842-66610861 Msa0037570:intron 50.0%
GCAAGTTTGATCATCCTGCG+GGG - chr1_1:66611182-66611201 Msa0037570:intron 50.0%
CAGTTGCTCCATACCCAGTT+GGG - chr1_1:66611248-66611267 Msa0037570:CDS 50.0%
TTTCGGCCTGAACTGAAGTC+AGG - chr1_1:66611310-66611329 Msa0037570:CDS 50.0%
! CTCGACTCGACGAGGAAGTT+AGG - chr1_1:66607011-66607030 Msa0037570:three_prime_UTR 55.0%
! CGGGTTGGATCCGTTTCTAG+TGG + chr1_1:66607184-66607203 None:intergenic 55.0%
AGAGCAGTAGCATCAGCAGC+AGG + chr1_1:66607231-66607250 None:intergenic 55.0%
GCTGCTGATGCTACTGCTCT+TGG - chr1_1:66607231-66607250 Msa0037570:CDS 55.0%
GCTGATGCTACTGCTCTTGG+AGG - chr1_1:66607234-66607253 Msa0037570:CDS 55.0%
TCGGTACACCATGTCTCTCC+GGG + chr1_1:66607413-66607432 None:intergenic 55.0%
ATTACCGCAGCACGATCACG+CGG + chr1_1:66607498-66607517 None:intergenic 55.0%
GCTGCTGCAGTAAGAGCTAC+AGG - chr1_1:66607930-66607949 Msa0037570:intron 55.0%
AAGAGCTACAGGGGACTACC+CGG - chr1_1:66607941-66607960 Msa0037570:intron 55.0%
!!! CCCCTCCATTTTTGGGATGG+TGG + chr1_1:66608148-66608167 None:intergenic 55.0%
TTCCACCATCCTCAACCTGC+TGG - chr1_1:66608375-66608394 Msa0037570:intron 55.0%
! AAGTGCCAGCAGGTTGAGGA+TGG + chr1_1:66608383-66608402 None:intergenic 55.0%
GCTAGACCTCCTGTGTTACC+CGG - chr1_1:66608504-66608523 Msa0037570:intron 55.0%
AACCCCTGGGGAAAGAAGCA+CGG + chr1_1:66608556-66608575 None:intergenic 55.0%
CCAGGAAATGGAACAACCCC+TGG + chr1_1:66608570-66608589 None:intergenic 55.0%
CCAGGGGTTGTTCCATTTCC+TGG - chr1_1:66608567-66608586 Msa0037570:intron 55.0%
AGAGAAGTAGCCCCAACAGC+AGG + chr1_1:66608757-66608776 None:intergenic 55.0%
CCCTGGAGGAAACACACTTC+AGG - chr1_1:66608852-66608871 Msa0037570:intron 55.0%
TCCTGAAAGACCCGGTGAAC+CGG - chr1_1:66608885-66608904 Msa0037570:intron 55.0%
! TATTGGCAGACCGGTTCACC+GGG + chr1_1:66608898-66608917 None:intergenic 55.0%
! GTATTGGCAGACCGGTTCAC+CGG + chr1_1:66608899-66608918 None:intergenic 55.0%
GGGCGTAGAGGAAGACCAAA+GGG + chr1_1:66609009-66609028 None:intergenic 55.0%
! CTTTGGTCTTCCTCTACGCC+CGG - chr1_1:66609008-66609027 Msa0037570:intron 55.0%
TCCTCTACGCCCGGTATGAA+TGG - chr1_1:66609017-66609036 Msa0037570:intron 55.0%
ACCATTCATACCGGGCGTAG+AGG + chr1_1:66609021-66609040 None:intergenic 55.0%
TAGACACCAGGCAGGGACAT+TGG + chr1_1:66609286-66609305 None:intergenic 55.0%
!! GTCTAACTTGTTGCCTGCGC+TGG - chr1_1:66609301-66609320 Msa0037570:intron 55.0%
CTGTATCTCATTGACCCCGC+AGG + chr1_1:66611199-66611218 None:intergenic 55.0%
CCAACTGGGTATGGAGCAAC+TGG + chr1_1:66611250-66611269 None:intergenic 55.0%
CCAGTTGCTCCATACCCAGT+TGG - chr1_1:66611247-66611266 Msa0037570:CDS 55.0%
AGCAGAAGCAGCAGACAGAG+TGG - chr1_1:66611472-66611491 Msa0037570:CDS 55.0%
! CTGTCTCTCTCGACTCGACG+AGG - chr1_1:66607003-66607022 Msa0037570:three_prime_UTR 60.0%
GGTCGGAGCCCCACTAGAAA+CGG - chr1_1:66607171-66607190 Msa0037570:three_prime_UTR 60.0%
TTACCGCAGCACGATCACGC+GGG + chr1_1:66607497-66607516 None:intergenic 60.0%
GCTTGGCGAACCTCCATGTC+AGG - chr1_1:66607968-66607987 Msa0037570:intron 60.0%
! TGCCAGCAGGTTGAGGATGG+TGG + chr1_1:66608380-66608399 None:intergenic 60.0%
! GCTGGCAATGAAGTGCCAGC+AGG + chr1_1:66608393-66608412 None:intergenic 60.0%
TCCAACGGTTCCTCCTCTGC+CGG - chr1_1:66608446-66608465 Msa0037570:intron 60.0%
CCAAACTGTTCCGGCAGAGG+AGG + chr1_1:66608459-66608478 None:intergenic 60.0%
CCTCCTCTGCCGGAACAGTT+TGG - chr1_1:66608456-66608475 Msa0037570:intron 60.0%
CCTCCAAACTGTTCCGGCAG+AGG + chr1_1:66608462-66608481 None:intergenic 60.0%
CCTCTGCCGGAACAGTTTGG+AGG - chr1_1:66608459-66608478 Msa0037570:intron 60.0%
GTCCCGTGCTTCTTTCCCCA+GGG - chr1_1:66608550-66608569 Msa0037570:intron 60.0%
TCCCGTGCTTCTTTCCCCAG+GGG - chr1_1:66608551-66608570 Msa0037570:intron 60.0%
! ACCCCTGGGGAAAGAAGCAC+GGG + chr1_1:66608555-66608574 None:intergenic 60.0%
GCGCGCCAGGAGATAACACA+GGG + chr1_1:66608732-66608751 None:intergenic 60.0%
TGCGCGCCAGGAGATAACAC+AGG + chr1_1:66608733-66608752 None:intergenic 60.0%
ACTCCTCTGCCCTCTTCTCC+TGG - chr1_1:66608829-66608848 Msa0037570:intron 60.0%
AGTGTGTTTCCTCCAGGGCC+AGG + chr1_1:66608850-66608869 None:intergenic 60.0%
! ACCGGTTCACCGGGTCTTTC+AGG + chr1_1:66608889-66608908 None:intergenic 60.0%
GAAGTGGTCGTGCAGCAACC+TGG + chr1_1:66608981-66609000 None:intergenic 60.0%
CGGGCGTAGAGGAAGACCAA+AGG + chr1_1:66609010-66609029 None:intergenic 60.0%
GGTGGGTCTGTCTCACTGTC+TGG - chr1_1:66611409-66611428 Msa0037570:intron 60.0%
TCACCCGCGTGATCGTGCTG+CGG - chr1_1:66607491-66607510 Msa0037570:CDS 65.0%
CTACAGGGGACTACCCGGAG+AGG - chr1_1:66607946-66607965 Msa0037570:intron 65.0%
GAGGTTCGCCAAGCCTCTCC+GGG + chr1_1:66607962-66607981 None:intergenic 65.0%
GGAGGTTCGCCAAGCCTCTC+CGG + chr1_1:66607963-66607982 None:intergenic 65.0%
TCCGGCAGAGGAGGAACCGT+TGG + chr1_1:66608450-66608469 None:intergenic 65.0%
GGTCCCGTGCTTCTTTCCCC+AGG - chr1_1:66608549-66608568 Msa0037570:intron 65.0%
CTGGCGCGCAACCTGCTGTT+GGG - chr1_1:66608743-66608762 Msa0037570:intron 65.0%
TGGCGCGCAACCTGCTGTTG+GGG - chr1_1:66608744-66608763 Msa0037570:intron 65.0%
CCTCCAGGGCCAGGAGAAGA+GGG + chr1_1:66608841-66608860 None:intergenic 65.0%
TCCTCCAGGGCCAGGAGAAG+AGG + chr1_1:66608842-66608861 None:intergenic 65.0%
GGGGACTACCCGGAGAGGCT+TGG - chr1_1:66607951-66607970 Msa0037570:intron 70.0%
CCAACAGCAGGTTGCGCGCC+AGG + chr1_1:66608745-66608764 None:intergenic 70.0%
CCTGGCGCGCAACCTGCTGT+TGG - chr1_1:66608742-66608761 Msa0037570:intron 70.0%
GGGCCAGGAGAAGAGGGCAG+AGG + chr1_1:66608835-66608854 None:intergenic 70.0%
CTGCCCTCTTCTCCTGGCCC+TGG - chr1_1:66608835-66608854 Msa0037570:intron 70.0%
CCCTCTTCTCCTGGCCCTGG+AGG - chr1_1:66608838-66608857 Msa0037570:intron 70.0%
CGTGCAGCAACCTGGTCCCG+TGG + chr1_1:66608973-66608992 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 66606850 66611862 66606850 ID=Msa0037570;Name=Msa0037570
chr1_1 mRNA 66606850 66611862 66606850 ID=Msa0037570-mRNA-1;Parent=Msa0037570;Name=Msa0037570-mRNA-1;_AED=0.20;_eAED=0.20;_QI=287|1|1|1|0.57|0.62|8|355|472
chr1_1 exon 66606850 66607588 66606850 ID=Msa0037570-mRNA-1:exon:21567;Parent=Msa0037570-mRNA-1
chr1_1 exon 66609683 66609994 66609683 ID=Msa0037570-mRNA-1:exon:21566;Parent=Msa0037570-mRNA-1
chr1_1 exon 66610107 66610400 66610107 ID=Msa0037570-mRNA-1:exon:21565;Parent=Msa0037570-mRNA-1
chr1_1 exon 66610495 66610614 66610495 ID=Msa0037570-mRNA-1:exon:21564;Parent=Msa0037570-mRNA-1
chr1_1 exon 66610723 66610785 66610723 ID=Msa0037570-mRNA-1:exon:21563;Parent=Msa0037570-mRNA-1
chr1_1 exon 66611200 66611348 66611200 ID=Msa0037570-mRNA-1:exon:21562;Parent=Msa0037570-mRNA-1
chr1_1 exon 66611457 66611767 66611457 ID=Msa0037570-mRNA-1:exon:21561;Parent=Msa0037570-mRNA-1
chr1_1 exon 66611790 66611862 66611790 ID=Msa0037570-mRNA-1:exon:21560;Parent=Msa0037570-mRNA-1
chr1_1 five_prime_UTR 66611790 66611862 66611790 ID=Msa0037570-mRNA-1:five_prime_utr;Parent=Msa0037570-mRNA-1
chr1_1 five_prime_UTR 66611554 66611767 66611554 ID=Msa0037570-mRNA-1:five_prime_utr;Parent=Msa0037570-mRNA-1
chr1_1 CDS 66611457 66611553 66611457 ID=Msa0037570-mRNA-1:cds;Parent=Msa0037570-mRNA-1
chr1_1 CDS 66611200 66611348 66611200 ID=Msa0037570-mRNA-1:cds;Parent=Msa0037570-mRNA-1
chr1_1 CDS 66610723 66610785 66610723 ID=Msa0037570-mRNA-1:cds;Parent=Msa0037570-mRNA-1
chr1_1 CDS 66610495 66610614 66610495 ID=Msa0037570-mRNA-1:cds;Parent=Msa0037570-mRNA-1
chr1_1 CDS 66610107 66610400 66610107 ID=Msa0037570-mRNA-1:cds;Parent=Msa0037570-mRNA-1
chr1_1 CDS 66609683 66609994 66609683 ID=Msa0037570-mRNA-1:cds;Parent=Msa0037570-mRNA-1
chr1_1 CDS 66607205 66607588 66607205 ID=Msa0037570-mRNA-1:cds;Parent=Msa0037570-mRNA-1
chr1_1 three_prime_UTR 66606850 66607204 66606850 ID=Msa0037570-mRNA-1:three_prime_utr;Parent=Msa0037570-mRNA-1
Gene Sequence

>Msa0037570

ATGGACTTGTACGGTCGGAGCCCCACTAGAAACGGATCCAACCCGCTTAATCAACATGAATGGCGTTCACCTGCTGCTGATGCTACTGCTCTTGGAGAGTCGATGTGGCATTTATCACTTGGTGGTGGTGGTGTTGAATCTTACCCGGAGAGACATGGTGTACCGAATTGTGCTTATTATATGAGAACCGGGTTTTGTGGATATGGTGGAAGGTGCCGTTTCAATCACCCGCGTGATCGTGCTGCGGTTGCTGCTGCAGTAAGAGCTACAGGGGACTACCCGGAGAGGCTTGGCGAACCTCCATGTCAGTATTATTTAAAAACTGGAACCTGTAAATTTGGCGCGTCTTGTAAATTCCACCATCCCAAAAATGGAGGGGGATATTTAAGCCAAGCTCCACTAAATATTTATGGATACCCATTACGACCGGGCGAGAGTGAGTGCTCCTATTATTTGAAAACGGGGCAGTGCAAATTTGGCGTAACTTGTAAATTCCACCATCCTCAACCTGCTGGCACTTCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCAACGGTTCCTCCTCTGCCGGAACAGTTTGGAGGAGCTTCTGCAAGTGTGAGAGTGGCTAGACCTCCTGTGTTACCCGGTTCATATGTACAAGGGGCTTATGGTCCCGTGCTTCTTTCCCCAGGGGTTGTTCCATTTCCTGGATGGAGTCCTTATTCGGCACCTGTAAGCCCTGTGTTATCTCCTGGCGCGCAACCTGCTGTTGGGGCTACTTCTCTTTACGGAGTAACTCAGTTGTCGTCATCAACATCAGCTTTTGCTAGACCTTATACTCCTCTGCCCTCTTCTCCTGGCCCTGGAGGAAACACACTTCAGGAAAAAGTATTTCCTGAAAGACCCGGTGAACCGGTCTGCCAATACTATATGAGAACTGGGGACTGTAAATTTGGATTAGCCTGTCGATATCATCATCCACGGGACCAGGTTGCTGCACGACCACTTCTTAGTCCCTTTGGTCTTCCTCTACGCCCGGGTGTACAGCCTTGTTCATTTTATATACAAAATGGGCACTGCAAGTTTGGCTCGACATGCAAGTTTGATCATCCTGCGGGGTCAATGAGATACAGTCCATCAGCATCTTCTCTTATTGATGTTCCAGTTGCTCCATACCCAGTTGGGTCTTTACTATCTAACCTGGTTCCTTCAACATCTTCAGAATTTCGGCCTGAACTGAAGTCAGGATCCAATTCCTTTTCAGCCAGAATGCATTCATCTGGAAATGGTTCTGGTACCTCTGTTGGTTTAATTTTTTCACAAGGTGGGTCTGTCTCACTGTCTGGTGCGCAACTCTCAAGCCAGAGTTCTGCTTCTTTGAACGGTAGCAGAAGCAGCAGACAGAGTGGTGAGATACATTGA
Protein sequence

>Msa0037570

MDLYGRSPTRNGSNPLNQHEWRSPAADATALGESMWHLSLGGGGVESYPERHGVPNCAYYMRTGFCGYGGRCRFNHPRDRAAVAAAVRATGDYPERLGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPGESECSYYLKTGQCKFGVTCKFHHPQPAGTSLPASAPQFYQQVQSPTVPPLPEQFGGASASVRVARPPVLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSPGPGGNTLQEKVFPERPGEPVCQYYMRTGDCKFGLACRYHHPRDQVAARPLLSPFGLPLRPGVQPCSFYIQNGHCKFGSTCKFDHPAGSMRYSPSASSLIDVPVAPYPVGSLLSNLVPSTSSEFRPELKSGSNSFSARMHSSGNGSGTSVGLIFSQGGSVSLSGAQLSSQSSASLNGSRSSRQSGEIH*