Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270860 | XP_013463376.1 | 93.671 | 79 | 3 | 1 | 1 | 79 | 1 | 77 | 1.18e-39 | 155 |
| Msa0270860 | XP_013463376.1 | 98.253 | 229 | 4 | 0 | 73 | 301 | 6 | 234 | 4.09e-159 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270860 | I3S3V7 | 93.671 | 79 | 3 | 1 | 1 | 79 | 1 | 77 | 5.64e-40 | 155 |
| Msa0270860 | I3S3V7 | 98.253 | 229 | 4 | 0 | 73 | 301 | 6 | 234 | 1.95e-159 | 462 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0270860 | Msa0432160 | 0.805254 | 1.458647e-49 | -8.615850e-47 |
| Msa0270860 | Msa0476680 | 0.803688 | 3.093684e-49 | -8.615850e-47 |
| Msa0270860 | Msa0521010 | 0.800760 | 1.239220e-48 | -8.615850e-47 |
| Msa0270860 | Msa0597770 | 0.802531 | 5.368527e-49 | -8.615850e-47 |
| Msa0270860 | Msa0626270 | 0.817540 | 3.128280e-52 | -8.615850e-47 |
| Msa0270860 | Msa1188180 | 0.817752 | 2.800948e-52 | -8.615850e-47 |
| Msa0270860 | Msa1283740 | 0.809451 | 1.880092e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270860 | MtrunA17_Chr2g0297561 | 98.253 | 229 | 4 | 0 | 73 | 301 | 6 | 234 | 3.76e-163 | 462 |
| Msa0270860 | MtrunA17_Chr2g0297561 | 93.671 | 79 | 3 | 1 | 1 | 79 | 1 | 77 | 1.09e-43 | 155 |
| Msa0270860 | MtrunA17_Chr7g0255441 | 36.885 | 244 | 134 | 7 | 71 | 301 | 3 | 239 | 3.71e-33 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0270860 | AT1G10790.1 | 40.000 | 210 | 123 | 3 | 78 | 285 | 19 | 227 | 1.08e-43 | 152 |
| Msa0270860 | AT3G56590.2 | 36.161 | 224 | 137 | 2 | 84 | 301 | 21 | 244 | 1.51e-32 | 126 |
| Msa0270860 | AT3G56590.1 | 36.161 | 224 | 137 | 2 | 84 | 301 | 21 | 244 | 2.88e-32 | 125 |
| Msa0270860 | AT3G10810.2 | 37.900 | 219 | 131 | 3 | 85 | 301 | 24 | 239 | 1.23e-26 | 109 |
| Msa0270860 | AT3G10810.1 | 37.900 | 219 | 131 | 3 | 85 | 301 | 24 | 239 | 1.41e-26 | 109 |
Find 57 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTAACAACATCAGTATT+TGG | 0.132242 | 2_3:+2198821 | Msa0270860:CDS |
| CTCAAGTACACTGGATTTAT+TGG | 0.142617 | 2_3:-2198749 | None:intergenic |
| CTTTCGTTTCTGTAATCTTT+TGG | 0.184778 | 2_3:+2195137 | Msa0270860:CDS |
| CTTTCGTTTCTGTAATCTTT+TGG | 0.184778 | 2_3:+2196609 | Msa0270860:CDS |
| GCTTTGGCAATGGGGAAAAT+TGG | 0.213954 | 2_3:+2194992 | Msa0270860:exon |
| CTAGCTTCAAATTTGTGTTT+AGG | 0.277519 | 2_3:-2195166 | None:intergenic |
| TTTGAGATCTTAAAGTTTCC+TGG | 0.282888 | 2_3:+2198857 | Msa0270860:CDS |
| TTTGAGGAAGAATTGAAGTT+TGG | 0.294679 | 2_3:+2198992 | Msa0270860:CDS |
| CTAGCTTCGAATTTGTGTTT+AGG | 0.304005 | 2_3:-2196638 | None:intergenic |
| TCTTCTAATCTTTCAATGTA+TGG | 0.309011 | 2_3:-2198512 | None:intergenic |
| GGATTTATTGGAACGTTCAT+TGG | 0.310537 | 2_3:-2198737 | None:intergenic |
| ACCAAAGTGTTGCACCTAAT+TGG | 0.313782 | 2_3:+2198684 | Msa0270860:CDS |
| TTAAAGTCAGGTTGGTTTGC+TGG | 0.321820 | 2_3:-2198805 | None:intergenic |
| CTTTAACAACATCAGTATTT+GGG | 0.342490 | 2_3:+2198822 | Msa0270860:CDS |
| AATTGGTCTGACGTGGTATT+TGG | 0.346861 | 2_3:+2198701 | Msa0270860:CDS |
| TTCCCCATTGCCAAAGCATC+TGG | 0.355407 | 2_3:-2194986 | None:intergenic |
| CTCAAAATATTAAGTGAAAC+AGG | 0.366531 | 2_3:-2199051 | None:intergenic |
| GGTTGGTTTGCTGGAGAAAC+AGG | 0.378948 | 2_3:-2198796 | None:intergenic |
| CTTATCCAGGACTTCAGATA+TGG | 0.382361 | 2_3:-2198960 | None:intergenic |
| GAGAGAGATTCCAGATGCTT+TGG | 0.383155 | 2_3:+2194976 | Msa0270860:five_prime_UTR |
| ATTCCAGATGCTTTGGCAAT+GGG | 0.385105 | 2_3:+2194983 | Msa0270860:exon |
| CTCATGTTCAAGCATCCTTC+AGG | 0.393016 | 2_3:+2198462 | Msa0270860:CDS |
| AATACCACGTCAGACCAATT+AGG | 0.396698 | 2_3:-2198698 | None:intergenic |
| TTGGCAAATACCTTCGTGTT+TGG | 0.407914 | 2_3:-2198560 | None:intergenic |
| CGATGAAGGTGCACGGTGTT+CGG | 0.433041 | 2_3:+2196529 | Msa0270860:CDS |
| ACCAATTAGGTGCAACACTT+TGG | 0.454232 | 2_3:-2198685 | None:intergenic |
| CAAAATCATCAAACTTATCC+AGG | 0.459186 | 2_3:-2198973 | None:intergenic |
| ATTAAGTGAAACAGGTTATG+AGG | 0.465705 | 2_3:-2199043 | None:intergenic |
| ATACTGATGTTGTTAAAGTC+AGG | 0.468534 | 2_3:-2198817 | None:intergenic |
| TATGGAATAAGCTGTGAAAC+TGG | 0.468542 | 2_3:-2198494 | None:intergenic |
| AATTAGGTGCAACACTTTGG+TGG | 0.478750 | 2_3:-2198682 | None:intergenic |
| TCATTCCATATCTGAAGTCC+TGG | 0.479722 | 2_3:+2198955 | Msa0270860:CDS |
| CAACACTTTGGTGGATGGAT+AGG | 0.504344 | 2_3:-2198673 | None:intergenic |
| GATTCCAGATGCTTTGGCAA+TGG | 0.514774 | 2_3:+2194982 | Msa0270860:exon |
| AGGTGCAACACTTTGGTGGA+TGG | 0.525225 | 2_3:-2198678 | None:intergenic |
| GAACAGAGGCAAGACGATGA+AGG | 0.536245 | 2_3:+2195043 | Msa0270860:CDS |
| AGATCTTAAAGTTTCCTGGT+GGG | 0.540304 | 2_3:+2198861 | Msa0270860:CDS |
| TGATGTTGTTAAAGTCAGGT+TGG | 0.550468 | 2_3:-2198813 | None:intergenic |
| TGTTCAAGCATCCTTCAGGC+TGG | 0.554060 | 2_3:+2198466 | Msa0270860:CDS |
| GAGATCTTAAAGTTTCCTGG+TGG | 0.566552 | 2_3:+2198860 | Msa0270860:CDS |
| GAACAGAGGCAAAACGATGA+AGG | 0.566636 | 2_3:+2196515 | Msa0270860:CDS |
| AATGATGTAATTAAGCATAG+AGG | 0.580743 | 2_3:+2195199 | Msa0270860:CDS |
| AATGATGTAATTAAGCATAG+AGG | 0.580743 | 2_3:+2196671 | Msa0270860:CDS |
| CACATAGAAACAGACTGCAC+TGG | 0.581225 | 2_3:-2198896 | None:intergenic |
| GGTATTACAGTCAACCCACC+AGG | 0.602265 | 2_3:-2198875 | None:intergenic |
| TTCAGCACACTCAAGTACAC+TGG | 0.610830 | 2_3:-2198758 | None:intergenic |
| TTCTATGTGGCAGATACGCG+AGG | 0.614118 | 2_3:+2198910 | Msa0270860:CDS |
| GGCAAGACGATGAAGGTGCA+CGG | 0.631187 | 2_3:+2195050 | Msa0270860:CDS |
| GGCAAAACGATGAAGGTGCA+CGG | 0.631187 | 2_3:+2196522 | Msa0270860:CDS |
| CAGTGCAGTCTGTTTCTATG+TGG | 0.631558 | 2_3:+2198897 | Msa0270860:CDS |
| TTCCAGATGCTTTGGCAATG+GGG | 0.632353 | 2_3:+2194984 | Msa0270860:exon |
| TGCACCTAATTGGTCTGACG+TGG | 0.680415 | 2_3:+2198694 | Msa0270860:CDS |
| AATATCTCTGCCAAACACGA+AGG | 0.688962 | 2_3:+2198550 | Msa0270860:CDS |
| ATGTACAACAAGAAGAACAG+AGG | 0.698663 | 2_3:+2195029 | Msa0270860:CDS |
| GAACGTTCATTGGATCAGAG+AGG | 0.710677 | 2_3:-2198727 | None:intergenic |
| ATGTGCAACAAGAAGAACAG+AGG | 0.711319 | 2_3:+2196501 | Msa0270860:CDS |
| ATTGCATCTGAAGTCTGATG+AGG | 0.712979 | 2_3:+2199015 | Msa0270860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAATTTTATACTGATTA+TGG | + | chr2_3:2195441-2195460 | Msa0270860:intron | 10.0% |
| !!! | TTTCCTTTTTTTTAATTTTA+GGG | - | chr2_3:2196210-2196229 | None:intergenic | 10.0% |
| !!! | ATTTCCTTTTTTTTAATTTT+AGG | - | chr2_3:2196211-2196230 | None:intergenic | 10.0% |
| !!! | TTTTAATTTTATACTGATTA+TGG | + | chr2_3:2196931-2196950 | Msa0270860:intron | 10.0% |
| !!! | GGATTAGATTTTTTTTTTTT+TGG | + | chr2_3:2195523-2195542 | Msa0270860:intron | 15.0% |
| !! | TAACCCTAAAATTAAAAAAA+AGG | + | chr2_3:2196204-2196223 | Msa0270860:intron | 15.0% |
| !!! | TTTTTTTTTTGATCAAATTC+AGG | + | chr2_3:2197023-2197042 | Msa0270860:intron | 15.0% |
| !!! | CCTAAAAAATTTAGTTATTT+TGG | - | chr2_3:2198210-2198229 | None:intergenic | 15.0% |
| !!! | CCAAAATAACTAAATTTTTT+AGG | + | chr2_3:2198207-2198226 | Msa0270860:intron | 15.0% |
| !! | TGATTTCAAAATTCAAAAGT+AGG | + | chr2_3:2195501-2195520 | Msa0270860:intron | 20.0% |
| !! | GATTTCAAAATTCAAAAGTA+GGG | + | chr2_3:2195502-2195521 | Msa0270860:intron | 20.0% |
| !!! | TTTTTTTTTGGATCAAATTC+AGG | + | chr2_3:2195535-2195554 | Msa0270860:intron | 20.0% |
| !!! | CTATTATAGATTGTTGATTT+CGG | + | chr2_3:2195610-2195629 | Msa0270860:intron | 20.0% |
| !!! | TATGAGAGTATTATGATTTA+TGG | + | chr2_3:2195855-2195874 | Msa0270860:intron | 20.0% |
| !! | AAATTTAAATCGTCAATTAG+TGG | + | chr2_3:2195923-2195942 | Msa0270860:intron | 20.0% |
| !! | TGAGAGAATATTATGATTTA+TGG | + | chr2_3:2196017-2196036 | Msa0270860:intron | 20.0% |
| !!! | AATTTTAGGGTTAACTTTTT+AGG | - | chr2_3:2196197-2196216 | None:intergenic | 20.0% |
| !! | TGATACTATTTGTCATAATT+AGG | + | chr2_3:2196837-2196856 | Msa0270860:intron | 20.0% |
| !! | TGATTTCAAAATTCAAAAGT+AGG | + | chr2_3:2195501-2195520 | Msa0270860:intron | 20.0% |
| !! | GATTTCAAAATTCAAAAGTA+GGG | + | chr2_3:2195502-2195521 | Msa0270860:intron | 20.0% |
| !!! | CTATTATAGATTGTTGATTT+CGG | + | chr2_3:2195610-2195629 | Msa0270860:intron | 20.0% |
| !!! | TATGAGAGTATTATGATTTA+TGG | + | chr2_3:2195855-2195874 | Msa0270860:intron | 20.0% |
| !! | AAAAAAGTGAACAATTTACA+AGG | - | chr2_3:2197605-2197624 | None:intergenic | 20.0% |
| !! | ATTGTAATAATAGTTACTGT+TGG | + | chr2_3:2197757-2197776 | Msa0270860:intron | 20.0% |
| !! | TCCATAAATTTAAACTTTGA+AGG | + | chr2_3:2198138-2198157 | Msa0270860:intron | 20.0% |
| !! | TCCTTCAAAGTTTAAATTTA+TGG | - | chr2_3:2198142-2198161 | None:intergenic | 20.0% |
| !! | TTCATTTGAATTCTTATTGT+TGG | + | chr2_3:2198388-2198407 | Msa0270860:intron | 20.0% |
| ! | AATGATGTAATTAAGCATAG+AGG | + | chr2_3:2195199-2195218 | Msa0270860:CDS | 25.0% |
| !! | TGATGCTATTTGTCATAATT+AGG | + | chr2_3:2195347-2195366 | Msa0270860:intron | 25.0% |
| ! | CGAAATCAACAATCTATAAT+AGG | - | chr2_3:2195612-2195631 | None:intergenic | 25.0% |
| ! | TGAAAATAGTATGATAGCAT+CGG | + | chr2_3:2195636-2195655 | Msa0270860:intron | 25.0% |
| ! | CATATCTCATTAACATGTAA+GGG | - | chr2_3:2195706-2195725 | None:intergenic | 25.0% |
| ! | TAATACTCTCATACAATGTA+TGG | - | chr2_3:2195848-2195867 | None:intergenic | 25.0% |
| !! | AGAGTATTATGATTTATGGT+TGG | + | chr2_3:2195859-2195878 | Msa0270860:intron | 25.0% |
| ! | TATTCTCTCAATACAAAGTA+TGG | - | chr2_3:2196007-2196026 | None:intergenic | 25.0% |
| ! | AGAATATTATGATTTATGGC+TGG | + | chr2_3:2196021-2196040 | Msa0270860:intron | 25.0% |
| ! | AATGATGTAATTAAGCATAG+AGG | + | chr2_3:2195199-2195218 | Msa0270860:CDS | 25.0% |
| ! | CGAAATCAACAATCTATAAT+AGG | - | chr2_3:2195612-2195631 | None:intergenic | 25.0% |
| ! | TGAAAATAGTATGATAGCAT+CGG | + | chr2_3:2195636-2195655 | Msa0270860:intron | 25.0% |
| ! | CATATCTCATTAACATGTAA+GGG | - | chr2_3:2195706-2195725 | None:intergenic | 25.0% |
| ! | TAATACTCTCATACAAAGTA+TGG | - | chr2_3:2197330-2197349 | None:intergenic | 25.0% |
| !! | AGAGTATTATGATTTATGGT+TGG | + | chr2_3:2195859-2195878 | Msa0270860:intron | 25.0% |
| !!! | TGAGAGAGTATTATGATTTA+TGG | + | chr2_3:2197479-2197498 | Msa0270860:intron | 25.0% |
| !!! | TCTTCTAGAGTTGTAAAAAA+AGG | - | chr2_3:2197531-2197550 | None:intergenic | 25.0% |
| !!! | AATTTGTCATTTTTACCTTC+AGG | + | chr2_3:2197669-2197688 | Msa0270860:intron | 25.0% |
| !! | ATCAAACTTTTCTGCATAAA+AGG | - | chr2_3:2197739-2197758 | None:intergenic | 25.0% |
| ! | CTAATAGTTGTAATACTACT+TGG | - | chr2_3:2197809-2197828 | None:intergenic | 25.0% |
| ! | TAAATACAGTTAGAGAATTG+AGG | + | chr2_3:2198083-2198102 | Msa0270860:intron | 25.0% |
| !!! | TATCACTCATAAGTTTGTTA+TGG | + | chr2_3:2198318-2198337 | Msa0270860:intron | 25.0% |
| ! | TCTTCTAATCTTTCAATGTA+TGG | - | chr2_3:2198515-2198534 | None:intergenic | 25.0% |
| ! | ACTTTAACAACATCAGTATT+TGG | + | chr2_3:2198821-2198840 | Msa0270860:CDS | 25.0% |
| ! | CTTTAACAACATCAGTATTT+GGG | + | chr2_3:2198822-2198841 | Msa0270860:CDS | 25.0% |
| ! | CTCAAAATATTAAGTGAAAC+AGG | - | chr2_3:2199054-2199073 | None:intergenic | 25.0% |
| !!! | ATATTTTGAGAACTGCAATT+TGG | + | chr2_3:2199064-2199083 | Msa0270860:exon | 25.0% |
| !!! | TATTTTGAGAACTGCAATTT+GGG | + | chr2_3:2199065-2199084 | Msa0270860:exon | 25.0% |
| !!! | CATTCTCTTTTTCAGTTTAG+CGG | + | chr2_3:2195114-2195133 | Msa0270860:CDS | 30.0% |
| ! | CTTTCGTTTCTGTAATCTTT+TGG | + | chr2_3:2195137-2195156 | Msa0270860:CDS | 30.0% |
| CTAGCTTCAAATTTGTGTTT+AGG | - | chr2_3:2195169-2195188 | None:intergenic | 30.0% | |
| TCAAAACACGAAATTGAAAG+TGG | - | chr2_3:2195233-2195252 | None:intergenic | 30.0% | |
| TTCAGGTATAACATGTTAAG+TGG | + | chr2_3:2195552-2195571 | Msa0270860:intron | 30.0% | |
| TCAGGTATAACATGTTAAGT+GGG | + | chr2_3:2195553-2195572 | Msa0270860:intron | 30.0% | |
| !! | TTATAGATTGTTGATTTCGG+AGG | + | chr2_3:2195613-2195632 | Msa0270860:intron | 30.0% |
| GCATATCTCATTAACATGTA+AGG | - | chr2_3:2195707-2195726 | None:intergenic | 30.0% | |
| ATAAACACACCTCAATAAGA+AGG | - | chr2_3:2195737-2195756 | None:intergenic | 30.0% | |
| TTCTTATTGAGGTGTGTTTA+TGG | + | chr2_3:2195736-2195755 | Msa0270860:intron | 30.0% | |
| TCTTATTGAGGTGTGTTTAT+GGG | + | chr2_3:2195737-2195756 | Msa0270860:intron | 30.0% | |
| AGATTTAAATCGTCAGTAAG+TGG | + | chr2_3:2195778-2195797 | Msa0270860:intron | 30.0% | |
| !! | TATGATTTATGGTTGGTAAG+AGG | + | chr2_3:2195866-2195885 | Msa0270860:intron | 30.0% |
| ! | TACAACAAGAGTATAAAGTC+GGG | - | chr2_3:2196133-2196152 | None:intergenic | 30.0% |
| ! | GTACAACAAGAGTATAAAGT+CGG | - | chr2_3:2196134-2196153 | None:intergenic | 30.0% |
| !!! | CATTCTCTTTTTCAGTTTAG+CGG | + | chr2_3:2195114-2195133 | Msa0270860:CDS | 30.0% |
| ! | CTTTCGTTTCTGTAATCTTT+TGG | + | chr2_3:2195137-2195156 | Msa0270860:CDS | 30.0% |
| TCAAAACACGAAATTGAAAG+TGG | - | chr2_3:2195233-2195252 | None:intergenic | 30.0% | |
| TTTATTTCGCTGTATTCGAT+TGG | + | chr2_3:2195307-2195326 | Msa0270860:intron | 30.0% | |
| !! | TTATAGATTGTTGATTTCGG+AGG | + | chr2_3:2195613-2195632 | Msa0270860:intron | 30.0% |
| GCATATCTCATTAACATGTA+AGG | - | chr2_3:2195707-2195726 | None:intergenic | 30.0% | |
| ATAAACACACCTCAATAAGA+AGG | - | chr2_3:2195737-2195756 | None:intergenic | 30.0% | |
| TTCTTATTGAGGTGTGTTTA+TGG | + | chr2_3:2195736-2195755 | Msa0270860:intron | 30.0% | |
| TCTTATTGAGGTGTGTTTAT+GGG | + | chr2_3:2195737-2195756 | Msa0270860:intron | 30.0% | |
| AGATTTAAATCGTCAGTAAG+TGG | + | chr2_3:2195778-2195797 | Msa0270860:intron | 30.0% | |
| !! | TATGATTTATGGTTGGTAAG+AGG | + | chr2_3:2195866-2195885 | Msa0270860:intron | 30.0% |
| GAAAAACAATCGTCAATTAG+TGG | + | chr2_3:2197385-2197404 | Msa0270860:intron | 30.0% | |
| TACTCTCTCAATACAAAGTA+TGG | - | chr2_3:2197469-2197488 | None:intergenic | 30.0% | |
| ! | AGAGTATTATGATTTATGGC+TGG | + | chr2_3:2197483-2197502 | Msa0270860:intron | 30.0% |
| TGTCTACATTTACCAAAAAG+AGG | - | chr2_3:2197650-2197669 | None:intergenic | 30.0% | |
| TGCTTATATGATTTACCTGA+AGG | - | chr2_3:2197687-2197706 | None:intergenic | 30.0% | |
| AGTTACTGTTGGAAATAGAA+TGG | + | chr2_3:2197768-2197787 | Msa0270860:intron | 30.0% | |
| !! | TTTGCTGTATCTGATCTTTT+AGG | + | chr2_3:2197857-2197876 | Msa0270860:intron | 30.0% |
| CTCAGTAGAATGATACATTT+AGG | - | chr2_3:2197953-2197972 | None:intergenic | 30.0% | |
| AGGATATTTATTCCAAATCC+TGG | + | chr2_3:2198103-2198122 | Msa0270860:intron | 30.0% | |
| ! | TGCACATTGATATCTTTTAC+TGG | + | chr2_3:2198231-2198250 | Msa0270860:intron | 30.0% |
| AAAATGTAAGAGAAGAAGCT+TGG | - | chr2_3:2198582-2198601 | None:intergenic | 30.0% | |
| !!! | TCTCTTACATTTTTTTCCTC+AGG | + | chr2_3:2198589-2198608 | Msa0270860:intron | 30.0% |
| !!! | ATTAGCCACTTTTTATGTCT+GGG | - | chr2_3:2198623-2198642 | None:intergenic | 30.0% |
| !!! | TATTAGCCACTTTTTATGTC+TGG | - | chr2_3:2198624-2198643 | None:intergenic | 30.0% |
| ATACTGATGTTGTTAAAGTC+AGG | - | chr2_3:2198820-2198839 | None:intergenic | 30.0% | |
| ! | TTTGAGATCTTAAAGTTTCC+TGG | + | chr2_3:2198857-2198876 | Msa0270860:CDS | 30.0% |
| CAAAATCATCAAACTTATCC+AGG | - | chr2_3:2198976-2198995 | None:intergenic | 30.0% | |
| !! | GGATAAGTTTGATGATTTTG+AGG | + | chr2_3:2198976-2198995 | Msa0270860:CDS | 30.0% |
| TTTGAGGAAGAATTGAAGTT+TGG | + | chr2_3:2198992-2199011 | Msa0270860:CDS | 30.0% | |
| ATTAAGTGAAACAGGTTATG+AGG | - | chr2_3:2199046-2199065 | None:intergenic | 30.0% | |
| !!! | GTTTTGACTTTTGAGTGAAA+TGG | - | chr2_3:2199102-2199121 | None:intergenic | 30.0% |
| ATGTACAACAAGAAGAACAG+AGG | + | chr2_3:2195029-2195048 | Msa0270860:CDS | 35.0% | |
| TCGCTGTATTCGATATGAAA+CGG | + | chr2_3:2195313-2195332 | Msa0270860:intron | 35.0% | |
| TCTATAATAGGCACGAATCA+CGG | - | chr2_3:2195600-2195619 | None:intergenic | 35.0% | |
| AACATGTAAGGGAAGTCAAA+TGG | - | chr2_3:2195695-2195714 | None:intergenic | 35.0% | |
| GCATACAAACCTTCTTATTG+AGG | + | chr2_3:2195725-2195744 | Msa0270860:intron | 35.0% | |
| AAGGCAAACAACAATTGCTA+AGG | - | chr2_3:2195973-2195992 | None:intergenic | 35.0% | |
| !! | GCAATTGTTGTTTGCCTTAT+CGG | + | chr2_3:2195975-2195994 | Msa0270860:intron | 35.0% |
| ! | TACTCTTGTTGTACTCTTGT+TGG | + | chr2_3:2196074-2196093 | Msa0270860:intron | 35.0% |
| ! | ACTCTTGTTGTACTCTTGTT+GGG | + | chr2_3:2196075-2196094 | Msa0270860:intron | 35.0% |
| TCTTGTTGGGAATAGGATTA+TGG | + | chr2_3:2196088-2196107 | Msa0270860:intron | 35.0% | |
| CTTGTTGGGAATAGGATTAT+GGG | + | chr2_3:2196089-2196108 | Msa0270860:intron | 35.0% | |
| ! | ACAACAAGAGTATAAAGTCG+GGG | - | chr2_3:2196132-2196151 | None:intergenic | 35.0% |
| CTAGCTTCGAATTTGTGTTT+AGG | - | chr2_3:2196641-2196660 | None:intergenic | 35.0% | |
| TTCAGGTATAACGTGTTAAG+TGG | + | chr2_3:2197040-2197059 | Msa0270860:intron | 35.0% | |
| TCTATAATAGGCACGAATCA+CGG | - | chr2_3:2195600-2195619 | None:intergenic | 35.0% | |
| GCATACAAACCTTCTTATTG+AGG | + | chr2_3:2195725-2195744 | Msa0270860:intron | 35.0% | |
| AAGGCAAACAACAATTGCTA+AGG | - | chr2_3:2195973-2195992 | None:intergenic | 35.0% | |
| !! | GCAATTGTTGTTTGCCTTAT+CGG | + | chr2_3:2195975-2195994 | Msa0270860:intron | 35.0% |
| ! | CTAGAAGACTCTTGATGTTT+TGG | + | chr2_3:2197543-2197562 | Msa0270860:intron | 35.0% |
| ! | TTGTCAAACGTTCCTCTTTT+TGG | + | chr2_3:2197635-2197654 | Msa0270860:intron | 35.0% |
| ACTCAAGCATATTCAGAATC+TGG | + | chr2_3:2197983-2198002 | Msa0270860:intron | 35.0% | |
| CTCAAGCATATTCAGAATCT+GGG | + | chr2_3:2197984-2198003 | Msa0270860:intron | 35.0% | |
| !! | TATCTGTGATGAAGCATTGT+CGG | - | chr2_3:2198038-2198057 | None:intergenic | 35.0% |
| ACATGTATAGTGCAGTACAA+AGG | - | chr2_3:2198286-2198305 | None:intergenic | 35.0% | |
| ACTTATGAGTGATAGTTGCA+CGG | - | chr2_3:2198312-2198331 | None:intergenic | 35.0% | |
| CTTGAACATGAGCTGAAAAT+TGG | - | chr2_3:2198454-2198473 | None:intergenic | 35.0% | |
| TATGGAATAAGCTGTGAAAC+TGG | - | chr2_3:2198497-2198516 | None:intergenic | 35.0% | |
| AAGCTAGTTACTCTTAACAC+AGG | + | chr2_3:2198643-2198662 | Msa0270860:intron | 35.0% | |
| GGATTTATTGGAACGTTCAT+TGG | - | chr2_3:2198740-2198759 | None:intergenic | 35.0% | |
| CTCAAGTACACTGGATTTAT+TGG | - | chr2_3:2198752-2198771 | None:intergenic | 35.0% | |
| TGATGTTGTTAAAGTCAGGT+TGG | - | chr2_3:2198816-2198835 | None:intergenic | 35.0% | |
| AGATCTTAAAGTTTCCTGGT+GGG | + | chr2_3:2198861-2198880 | Msa0270860:CDS | 35.0% | |
| ATTCCAGATGCTTTGGCAAT+GGG | + | chr2_3:2194983-2195002 | Msa0270860:exon | 40.0% | |
| !! | ACTCATTGTTGACTTGCTGT+TGG | + | chr2_3:2195807-2195826 | Msa0270860:intron | 40.0% |
| AACAACAATTGCTAAGGTGC+AGG | - | chr2_3:2195967-2195986 | None:intergenic | 40.0% | |
| AAGTATGGATCTTGCCGATA+AGG | - | chr2_3:2195992-2196011 | None:intergenic | 40.0% | |
| GTTGTACTCTTGTTGGGAAT+AGG | + | chr2_3:2196081-2196100 | Msa0270860:intron | 40.0% | |
| TTGGGAATAGGATTATGGGT+TGG | + | chr2_3:2196093-2196112 | Msa0270860:intron | 40.0% | |
| TGGGAATAGGATTATGGGTT+GGG | + | chr2_3:2196094-2196113 | Msa0270860:intron | 40.0% | |
| !! | TAGGATTATGGGTTGGGAAT+AGG | + | chr2_3:2196100-2196119 | Msa0270860:intron | 40.0% |
| ! | CAACAAGAGTATAAAGTCGG+GGG | - | chr2_3:2196131-2196150 | None:intergenic | 40.0% |
| CTCTATAGTGTGATTTACGC+TGG | - | chr2_3:2196256-2196275 | None:intergenic | 40.0% | |
| GCGTAAATCACACTATAGAG+AGG | + | chr2_3:2196256-2196275 | Msa0270860:intron | 40.0% | |
| !! | TGTTATGATGGTGTTGTTGC+TGG | - | chr2_3:2196392-2196411 | None:intergenic | 40.0% |
| TCTACAACGCGTTGTTATGA+TGG | - | chr2_3:2196404-2196423 | None:intergenic | 40.0% | |
| ATTCCAGATGCTTTGGCAAT+GGG | + | chr2_3:2194983-2195002 | Msa0270860:exon | 40.0% | |
| ATGTGCAACAAGAAGAACAG+AGG | + | chr2_3:2196501-2196520 | Msa0270860:CDS | 40.0% | |
| GCTGTATTCGATTGGATTTG+AGG | + | chr2_3:2196790-2196809 | Msa0270860:intron | 40.0% | |
| ! | GGATTTGAGGTGTGATGAAA+CGG | + | chr2_3:2196803-2196822 | Msa0270860:intron | 40.0% |
| !! | AGTCATTGTTGACTTGCTGT+TGG | + | chr2_3:2197289-2197308 | Msa0270860:intron | 40.0% |
| AACAACAATTGCTAAGGTGC+AGG | - | chr2_3:2195967-2195986 | None:intergenic | 40.0% | |
| AAGTATGGATCTTGCCGATA+AGG | - | chr2_3:2195992-2196011 | None:intergenic | 40.0% | |
| !! | ATCTGTGATGAAGCATTGTC+GGG | - | chr2_3:2198037-2198056 | None:intergenic | 40.0% |
| ! | ACTCACAGTTTTCCAGGATT+TGG | - | chr2_3:2198118-2198137 | None:intergenic | 40.0% |
| ! | TATGGAACTCACAGTTTTCC+AGG | - | chr2_3:2198124-2198143 | None:intergenic | 40.0% |
| CAACACAGAAGATTAATCGC+AGG | - | chr2_3:2198363-2198382 | None:intergenic | 40.0% | |
| AATATCTCTGCCAAACACGA+AGG | + | chr2_3:2198550-2198569 | Msa0270860:CDS | 40.0% | |
| TTGGCAAATACCTTCGTGTT+TGG | - | chr2_3:2198563-2198582 | None:intergenic | 40.0% | |
| CTCTACCCAGACATAAAAAG+TGG | + | chr2_3:2198615-2198634 | Msa0270860:intron | 40.0% | |
| CTAGTTACTCTTAACACAGG+TGG | + | chr2_3:2198646-2198665 | Msa0270860:intron | 40.0% | |
| AATTAGGTGCAACACTTTGG+TGG | - | chr2_3:2198685-2198704 | None:intergenic | 40.0% | |
| !! | ACCAAAGTGTTGCACCTAAT+TGG | + | chr2_3:2198684-2198703 | Msa0270860:CDS | 40.0% |
| ACCAATTAGGTGCAACACTT+TGG | - | chr2_3:2198688-2198707 | None:intergenic | 40.0% | |
| AATACCACGTCAGACCAATT+AGG | - | chr2_3:2198701-2198720 | None:intergenic | 40.0% | |
| ! | AATTGGTCTGACGTGGTATT+TGG | + | chr2_3:2198701-2198720 | Msa0270860:CDS | 40.0% |
| !! | TTAAAGTCAGGTTGGTTTGC+TGG | - | chr2_3:2198808-2198827 | None:intergenic | 40.0% |
| GAGATCTTAAAGTTTCCTGG+TGG | + | chr2_3:2198860-2198879 | Msa0270860:CDS | 40.0% | |
| ! | TCATTCCATATCTGAAGTCC+TGG | + | chr2_3:2198955-2198974 | Msa0270860:CDS | 40.0% |
| CTTATCCAGGACTTCAGATA+TGG | - | chr2_3:2198963-2198982 | None:intergenic | 40.0% | |
| ! | ATTGCATCTGAAGTCTGATG+AGG | + | chr2_3:2199015-2199034 | Msa0270860:CDS | 40.0% |
| GAGAGAGATTCCAGATGCTT+TGG | + | chr2_3:2194976-2194995 | Msa0270860:five_prime_UTR | 45.0% | |
| GATTCCAGATGCTTTGGCAA+TGG | + | chr2_3:2194982-2195001 | Msa0270860:exon | 45.0% | |
| TTCCAGATGCTTTGGCAATG+GGG | + | chr2_3:2194984-2195003 | Msa0270860:exon | 45.0% | |
| GCTTTGGCAATGGGGAAAAT+TGG | + | chr2_3:2194992-2195011 | Msa0270860:exon | 45.0% | |
| ! | AGCATCGGATACGCGTAATT+AGG | + | chr2_3:2195651-2195670 | Msa0270860:intron | 45.0% |
| GCATCGGATACGCGTAATTA+GGG | + | chr2_3:2195652-2195671 | Msa0270860:intron | 45.0% | |
| !! | TGACTTGCTGTTGGACTCTT+CGG | + | chr2_3:2195816-2195835 | Msa0270860:intron | 45.0% |
| ! | GTAAGAGGAGTGTGCAAAAC+TGG | + | chr2_3:2195881-2195900 | Msa0270860:intron | 45.0% |
| CTTTGCTTCTCCTCAACGTT+CGG | + | chr2_3:2196168-2196187 | Msa0270860:intron | 45.0% | |
| ! | TTTTAGGCTACCGAACGTTG+AGG | - | chr2_3:2196181-2196200 | None:intergenic | 45.0% |
| ACAGAGAGAAAGAGTGAGAG+AGG | + | chr2_3:2196358-2196377 | Msa0270860:intron | 45.0% | |
| !! | TATGATGGTGTTGTTGCTGG+TGG | - | chr2_3:2196389-2196408 | None:intergenic | 45.0% |
| GAGAGAGATTCCAGATGCTT+TGG | + | chr2_3:2194976-2194995 | Msa0270860:five_prime_UTR | 45.0% | |
| GATTCCAGATGCTTTGGCAA+TGG | + | chr2_3:2194982-2195001 | Msa0270860:exon | 45.0% | |
| TTCCAGATGCTTTGGCAATG+GGG | + | chr2_3:2194984-2195003 | Msa0270860:exon | 45.0% | |
| GCTTTGGCAATGGGGAAAAT+TGG | + | chr2_3:2194992-2195011 | Msa0270860:exon | 45.0% | |
| GAACAGAGGCAAAACGATGA+AGG | + | chr2_3:2196515-2196534 | Msa0270860:CDS | 45.0% | |
| !! | TGACTTGCTGTTGGACTCTT+CGG | + | chr2_3:2195816-2195835 | Msa0270860:intron | 45.0% |
| CATGAGCTGAAAATTGGTCG+AGG | - | chr2_3:2198448-2198467 | None:intergenic | 45.0% | |
| CTCATGTTCAAGCATCCTTC+AGG | + | chr2_3:2198462-2198481 | Msa0270860:CDS | 45.0% | |
| !!! | AACTGGTTTTTCCAGCCTGA+AGG | - | chr2_3:2198480-2198499 | None:intergenic | 45.0% |
| ! | CAACACTTTGGTGGATGGAT+AGG | - | chr2_3:2198676-2198695 | None:intergenic | 45.0% |
| GAACGTTCATTGGATCAGAG+AGG | - | chr2_3:2198730-2198749 | None:intergenic | 45.0% | |
| TTCAGCACACTCAAGTACAC+TGG | - | chr2_3:2198761-2198780 | None:intergenic | 45.0% | |
| CACATAGAAACAGACTGCAC+TGG | - | chr2_3:2198899-2198918 | None:intergenic | 45.0% | |
| !! | CAGTGCAGTCTGTTTCTATG+TGG | + | chr2_3:2198897-2198916 | Msa0270860:CDS | 45.0% |
| ! | TTCCCCATTGCCAAAGCATC+TGG | - | chr2_3:2194989-2195008 | None:intergenic | 50.0% |
| GAACAGAGGCAAGACGATGA+AGG | + | chr2_3:2195043-2195062 | Msa0270860:CDS | 50.0% | |
| CGAACGTTGAGGAGAAGCAA+AGG | - | chr2_3:2196170-2196189 | None:intergenic | 50.0% | |
| ! | TTCCCCATTGCCAAAGCATC+TGG | - | chr2_3:2194989-2195008 | None:intergenic | 50.0% |
| ! | GGCAAAACGATGAAGGTGCA+CGG | + | chr2_3:2196522-2196541 | Msa0270860:CDS | 50.0% |
| ! | AGCATCGGATGCGCGTAATT+AGG | + | chr2_3:2197133-2197152 | Msa0270860:intron | 50.0% |
| GCATCGGATGCGCGTAATTA+GGG | + | chr2_3:2197134-2197153 | Msa0270860:intron | 50.0% | |
| ! | GTAAGAGGAGCGTGCAAAAC+TGG | + | chr2_3:2197363-2197382 | Msa0270860:intron | 50.0% |
| TGTTCAAGCATCCTTCAGGC+TGG | + | chr2_3:2198466-2198485 | Msa0270860:CDS | 50.0% | |
| AGGTGCAACACTTTGGTGGA+TGG | - | chr2_3:2198681-2198700 | None:intergenic | 50.0% | |
| ! | TGCACCTAATTGGTCTGACG+TGG | + | chr2_3:2198694-2198713 | Msa0270860:CDS | 50.0% |
| !! | GGTTGGTTTGCTGGAGAAAC+AGG | - | chr2_3:2198799-2198818 | None:intergenic | 50.0% |
| GGTATTACAGTCAACCCACC+AGG | - | chr2_3:2198878-2198897 | None:intergenic | 50.0% | |
| TTCTATGTGGCAGATACGCG+AGG | + | chr2_3:2198910-2198929 | Msa0270860:CDS | 50.0% | |
| ! | GGCAAGACGATGAAGGTGCA+CGG | + | chr2_3:2195050-2195069 | Msa0270860:CDS | 55.0% |
| ! | CGATGAAGGTGCACGGTGTT+CGG | + | chr2_3:2195057-2195076 | Msa0270860:CDS | 55.0% |
| TGTCTGGGTAGAGAGACCTG+AGG | - | chr2_3:2198608-2198627 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 2194945 | 2199127 | 2194945 | ID=Msa0270860;Name=Msa0270860 |
| chr2_3 | mRNA | 2194945 | 2199127 | 2194945 | ID=Msa0270860-mRNA-1;Parent=Msa0270860;Name=Msa0270860-mRNA-1;_AED=0.05;_eAED=0.05;_QI=56|0.66|0.75|1|0.66|0.5|4|55|312 |
| chr2_3 | exon | 2194945 | 2195220 | 2194945 | ID=Msa0270860-mRNA-1:exon:1075;Parent=Msa0270860-mRNA-1 |
| chr2_3 | exon | 2196492 | 2196692 | 2196492 | ID=Msa0270860-mRNA-1:exon:1076;Parent=Msa0270860-mRNA-1 |
| chr2_3 | exon | 2198462 | 2198571 | 2198462 | ID=Msa0270860-mRNA-1:exon:1077;Parent=Msa0270860-mRNA-1 |
| chr2_3 | exon | 2198665 | 2199127 | 2198665 | ID=Msa0270860-mRNA-1:exon:1078;Parent=Msa0270860-mRNA-1 |
| chr2_3 | five_prime_UTR | 2194945 | 2195000 | 2194945 | ID=Msa0270860-mRNA-1:five_prime_utr;Parent=Msa0270860-mRNA-1 |
| chr2_3 | CDS | 2195001 | 2195220 | 2195001 | ID=Msa0270860-mRNA-1:cds;Parent=Msa0270860-mRNA-1 |
| chr2_3 | CDS | 2196492 | 2196692 | 2196492 | ID=Msa0270860-mRNA-1:cds;Parent=Msa0270860-mRNA-1 |
| chr2_3 | CDS | 2198462 | 2198571 | 2198462 | ID=Msa0270860-mRNA-1:cds;Parent=Msa0270860-mRNA-1 |
| chr2_3 | CDS | 2198665 | 2199072 | 2198665 | ID=Msa0270860-mRNA-1:cds;Parent=Msa0270860-mRNA-1 |
| chr2_3 | three_prime_UTR | 2199073 | 2199127 | 2199073 | ID=Msa0270860-mRNA-1:three_prime_utr;Parent=Msa0270860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
