AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1188180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1188180 MtrunA17_Chr8g0355251 98.129 1176 22 0 2 1177 1 1176 0.0 2397
Msa1188180 MtrunA17_Chr3g0078371 77.826 1159 233 7 22 1176 73 1211 0.0 1837
Msa1188180 MtrunA17_Chr7g0244991 58.135 1137 431 10 65 1160 137 1269 0.0 1308
Msa1188180 MtrunA17_Chr5g0415271 37.060 1136 636 20 71 1158 24 1128 0.0 714
Msa1188180 MtrunA17_Chr8g0363911 37.728 1153 634 24 71 1174 44 1161 0.0 709
Msa1188180 MtrunA17_Chr6g0450601 37.500 1144 645 22 70 1157 37 1166 0.0 691
Msa1188180 MtrunA17_Chr2g0329991 36.466 1160 638 29 70 1157 40 1172 0.0 684
Msa1188180 MtrunA17_Chr8g0368691 36.661 1102 641 19 87 1144 67 1155 0.0 684
Msa1188180 MtrunA17_Chr4g0062251 37.337 1074 615 19 70 1101 38 1095 0.0 682
Msa1188180 MtrunA17_Chr3g0091611 36.762 1118 631 24 79 1144 41 1134 0.0 663
Msa1188180 MtrunA17_Chr8g0342811 34.824 1163 655 25 70 1158 40 1173 0.0 660
Msa1188180 MtrunA17_Chr0c05g0492131 35.784 1129 645 25 70 1144 33 1135 0.0 637
Msa1188180 MtrunA17_Chr2g0324791 33.010 1133 655 25 71 1176 3 1058 0.0 560
Msa1188180 MtrunA17_Chr8g0382071 22.099 543 264 18 377 900 376 778 3.27e-16 84.3
Msa1188180 MtrunA17_Chr1g0173111 23.716 409 209 14 377 768 375 697 2.90e-15 81.3
Msa1188180 MtrunA17_Chr8g0346461 25.143 350 207 10 442 767 352 670 1.39e-11 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1188180 AT5G04930.1 69.629 1159 328 8 22 1177 20 1157 0.0 1700
Msa1188180 AT3G27870.1 38.676 1148 619 27 70 1158 37 1158 0.0 718
Msa1188180 AT1G59820.1 35.780 1199 668 21 23 1176 11 1152 0.0 713
Msa1188180 AT3G13900.1 36.915 1154 640 22 71 1156 41 1174 0.0 698
Msa1188180 AT3G25610.1 37.288 1121 639 23 70 1144 39 1141 0.0 693
Msa1188180 AT1G68710.2 35.975 1123 654 20 70 1144 41 1146 0.0 689
Msa1188180 AT1G68710.1 35.975 1123 654 20 70 1144 41 1146 0.0 689
Msa1188180 AT1G26130.1 36.782 1131 630 23 70 1144 41 1142 0.0 687
Msa1188180 AT1G17500.2 36.649 1146 651 27 70 1161 40 1164 0.0 686
Msa1188180 AT1G17500.1 36.649 1146 651 27 70 1161 40 1164 0.0 686
Msa1188180 AT1G54280.2 36.810 1160 635 26 71 1156 41 1176 0.0 686
Msa1188180 AT1G54280.3 36.810 1160 635 26 71 1156 41 1176 0.0 686
Msa1188180 AT1G54280.1 36.810 1160 635 26 71 1156 41 1176 0.0 686
Msa1188180 AT1G72700.1 36.606 1161 646 30 70 1165 40 1175 0.0 684
Msa1188180 AT1G72700.3 36.606 1161 646 30 70 1165 40 1175 0.0 684
Msa1188180 AT1G72700.2 36.606 1161 646 30 70 1165 40 1175 0.0 684
Msa1188180 AT1G26130.2 36.749 1132 630 24 70 1144 41 1143 0.0 684
Msa1188180 AT1G26130.4 36.749 1132 630 24 70 1144 41 1143 0.0 684
Msa1188180 AT1G26130.3 36.749 1132 630 24 70 1144 41 1143 0.0 684
Msa1188180 AT1G68710.3 35.335 1149 652 21 70 1144 41 1172 0.0 677
Msa1188180 AT3G27870.2 40.680 971 515 20 70 1000 37 986 0.0 666
Msa1188180 AT1G13210.1 35.765 1124 655 23 70 1144 37 1142 0.0 664
Msa1188180 AT3G27870.3 38.206 992 531 24 224 1158 1 967 0.0 597
Msa1188180 AT3G13900.2 38.627 932 499 17 71 945 41 956 0.0 596
Msa1188180 AT5G44240.2 33.547 1094 649 19 71 1155 3 1027 0.0 568
Msa1188180 AT5G44240.1 33.547 1094 649 19 71 1155 35 1059 0.0 568
Msa1188180 AT3G13900.3 36.865 925 504 18 70 941 40 937 3.45e-176 546

Find 254 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATATCAATGAAGATTT+AGG 0.134302 8_1:+28285786 Msa1188180:CDS
GACTATTTCGATAGTTATTT+TGG 0.183975 8_1:+28288495 Msa1188180:CDS
CTACAGAGTCCTCAGCTTTA+TGG 0.189123 8_1:+28288325 Msa1188180:CDS
TTCTTCTTTCACTCTGTCTT+TGG 0.199217 8_1:+28284231 Msa1188180:five_prime_UTR
AGTTTCAATGCGCTAGTATT+TGG 0.205298 8_1:+28285865 Msa1188180:CDS
TGTTCCTCTCTTTGCATATT+GGG 0.205345 8_1:+28288435 Msa1188180:CDS
CTTCTTGTATTTATAAAATT+AGG 0.206900 8_1:+28289691 Msa1188180:three_prime_UTR
ATTACCTTATTATAGGAAAT+TGG 0.214718 8_1:+28285548 Msa1188180:CDS
TGAATCGATTACCTTATTAT+AGG 0.220322 8_1:+28285541 Msa1188180:CDS
GTGAGAGATGCTTGTGAATT+TGG 0.230511 8_1:-28284058 None:intergenic
GATTTCTCATGCATCCATTT+GGG 0.234204 8_1:+28288558 Msa1188180:CDS
GAAAAGAATGTCTGTTATAT+TGG 0.236706 8_1:+28286670 Msa1188180:CDS
GTTTCAATGCGCTAGTATTT+GGG 0.239935 8_1:+28285866 Msa1188180:CDS
GATATCCTTGTACATTTCTA+TGG 0.241630 8_1:+28285674 Msa1188180:CDS
AATCTCTCATTTGTTCTATC+AGG 0.248475 8_1:-28284688 None:intergenic
TTGTTCCTCTCTTTGCATAT+TGG 0.261562 8_1:+28288434 Msa1188180:CDS
TTGACAAGGATCTTAGTAAA+AGG 0.262036 8_1:+28288296 Msa1188180:CDS
AGAAAATAACCTATGCATAT+TGG 0.269137 8_1:+28286958 Msa1188180:CDS
TAGTACTAAAACATTTATTA+AGG 0.277021 8_1:-28284385 None:intergenic
GGAAAGCCGGTATTAAAGTA+TGG 0.277372 8_1:+28287041 Msa1188180:CDS
CTATGCAGGTTCAATGTCTT+GGG 0.277909 8_1:+28286623 Msa1188180:intron
TTAACTTTCACCTTCATCTT+TGG 0.278701 8_1:-28286091 None:intergenic
AATGAGAGATTTGAATTTGC+TGG 0.284143 8_1:+28284700 Msa1188180:CDS
TTTAGTACTAGAACAAATTA+TGG 0.286657 8_1:+28284398 Msa1188180:five_prime_UTR
TCTTTGTGCTAATTCTGTTT+TGG 0.290282 8_1:+28287931 Msa1188180:CDS
AAATCCAATTTCCTATAATA+AGG 0.292418 8_1:-28285552 None:intergenic
TAGCAAGTATTGGGGATCTT+TGG 0.295898 8_1:+28288473 Msa1188180:CDS
TACAGAGTCCTCAGCTTTAT+GGG 0.300068 8_1:+28288326 Msa1188180:CDS
AAAAGAATGTCTGTTATATT+GGG 0.301829 8_1:+28286671 Msa1188180:CDS
GGATTTCTCATGCATCCATT+TGG 0.302390 8_1:+28288557 Msa1188180:CDS
GTCATTTCATTGAGAAGAAA+TGG 0.322837 8_1:+28284992 Msa1188180:CDS
TCAACTAGGGAAGTCACTTT+TGG 0.326432 8_1:+28284547 Msa1188180:CDS
TGAATATCAATGAAGATTTA+GGG 0.327800 8_1:+28285787 Msa1188180:CDS
CAATAGGTTAGGATTGGTTT+TGG 0.334033 8_1:+28284963 Msa1188180:CDS
GAAAATAACCTATGCATATT+GGG 0.338089 8_1:+28286959 Msa1188180:CDS
TCGAGAAGTTTGAGAATAGA+AGG 0.341274 8_1:+28289445 Msa1188180:CDS
GGTTTGAGGACGCTTGTTAT+TGG 0.342303 8_1:+28286824 Msa1188180:CDS
GTTCAAACTCTTAATCTAGA+TGG 0.343224 8_1:+28285117 Msa1188180:CDS
CTTCAGTTTGCGCTGCTGTT+TGG 0.350525 8_1:+28285496 Msa1188180:CDS
TGGCAAGCACGACATTATTC+TGG 0.350578 8_1:+28289319 Msa1188180:CDS
AATCCATATATATTCCTATT+CGG 0.352270 8_1:-28285234 None:intergenic
GATTAAGTATAGCAATTATA+AGG 0.352400 8_1:-28284813 None:intergenic
CATGAAAAGGAGAGGTTTAG+TGG 0.354836 8_1:+28285192 Msa1188180:CDS
ATAGAAATGTACAAGGATAT+CGG 0.355230 8_1:-28285672 None:intergenic
CTGTAGATATAGCAAGTATT+GGG 0.355510 8_1:+28288464 Msa1188180:CDS
CCTATGGCGTTGATTATTGA+TGG 0.358296 8_1:+28287277 Msa1188180:CDS
TACCGTCACTTCATGGTTAC+TGG 0.358328 8_1:+28288626 Msa1188180:CDS
CAGATAAAGTTGAGAACAAT+AGG 0.358646 8_1:+28284947 Msa1188180:CDS
TCCTCGAATATTGTACTTAG+AGG 0.362052 8_1:+28285300 Msa1188180:CDS
GTTTGAGGACGCTTGTTATT+GGG 0.362402 8_1:+28286825 Msa1188180:CDS
CAACACTAGTGTTATCTTTG+TGG 0.362784 8_1:-28289510 None:intergenic
GTCGTGCAGAAGACGTTTAC+AGG 0.366456 8_1:+28287168 Msa1188180:CDS
GCTATGCAGGTTCAATGTCT+TGG 0.366620 8_1:+28286622 Msa1188180:intron
AAAGGGTAGCTTTGGAGAAA+TGG 0.374344 8_1:-28284129 None:intergenic
GTGAAAGGTGGTAGAAGAAA+AGG 0.376860 8_1:-28284147 None:intergenic
ATTTGAATTTGCTGGGAATT+CGG 0.381074 8_1:+28284708 Msa1188180:CDS
AAGCCGAATAGGAATATATA+TGG 0.382174 8_1:+28285231 Msa1188180:CDS
TGACGAGTAGCCAATTGATA+TGG 0.383546 8_1:-28287092 None:intergenic
GAGGTAAGTTATCAATATTA+TGG 0.385325 8_1:+28285588 Msa1188180:CDS
TATGTCAACGCTTGTTCATC+TGG 0.387878 8_1:-28286274 None:intergenic
GAGTCCAAACCTGTGAGATA+TGG 0.388556 8_1:+28284577 Msa1188180:CDS
GATGCTATACCGTCACTTCA+TGG 0.388855 8_1:+28288619 Msa1188180:CDS
CTTATTCTTCTGTGGGTTTG+AGG 0.389069 8_1:+28286810 Msa1188180:CDS
TAAATCTTCATTGATATTCA+AGG 0.394762 8_1:-28285784 None:intergenic
CAAACCCAGAAGTTCAAATC+TGG 0.395330 8_1:-28284189 None:intergenic
TCAATTTAAGTTTCATGAAA+AGG 0.397346 8_1:+28285179 Msa1188180:CDS
TGGGGTTGGCATCAGTGGTC+AGG 0.401702 8_1:+28287770 Msa1188180:CDS
CTTCACTCTTATTCTTCTGT+GGG 0.407311 8_1:+28286803 Msa1188180:CDS
CAAGAAACTGCCATATCAAT+TGG 0.409612 8_1:+28287082 Msa1188180:CDS
TGATCCATATCTCACAGGTT+TGG 0.410264 8_1:-28284581 None:intergenic
AACTTGCTCATTCTCAAGGC+TGG 0.412722 8_1:-28285913 None:intergenic
CGGAAGCTATTGAGTCTCTA+AGG 0.413263 8_1:+28287020 Msa1188180:CDS
TCATCATCAAGAAGAAGTTC+TGG 0.413308 8_1:+28284517 Msa1188180:CDS
CTTAGAGACTCAATAGCTTC+CGG 0.418470 8_1:-28287019 None:intergenic
CAGAAGAATAAGAGTGAAGA+TGG 0.418864 8_1:-28286799 None:intergenic
CACATAATGATTGATATTCA+TGG 0.419762 8_1:+28286343 Msa1188180:CDS
GGAGCTTGTTCGTGTTGGTC+AGG 0.421237 8_1:+28285695 Msa1188180:CDS
GTAGAAGAAAAGGGTAGCTT+TGG 0.427448 8_1:-28284137 None:intergenic
CATGTCGGTTATAGTTTACC+AGG 0.432869 8_1:+28285641 Msa1188180:CDS
CAAGTACTTCTATGATTGGT+AGG 0.433645 8_1:+28286903 Msa1188180:CDS
CAAGCTACAATGGAGGTTGA+TGG 0.433886 8_1:+28285258 Msa1188180:CDS
CAAGTTGAATACTCTCTTCA+AGG 0.436098 8_1:+28285930 Msa1188180:CDS
TTTGAGAATAGAAGGGTCAA+TGG 0.436649 8_1:+28289453 Msa1188180:CDS
AGTGGATTTGCAAGCAAAGA+TGG 0.436723 8_1:+28286139 Msa1188180:CDS
CGTCAGAATATTATTGATGT+TGG 0.436878 8_1:+28289589 Msa1188180:three_prime_UTR
ACATATGCTGCCGCTGCCTA+TGG 0.439035 8_1:+28286292 Msa1188180:CDS
CAACCCCAACATCAGCCATT+TGG 0.441854 8_1:-28287755 None:intergenic
ATTGGGGTGCAATGACAATT+CGG 0.449050 8_1:+28286688 Msa1188180:CDS
TCTTCACTCTTATTCTTCTG+TGG 0.450704 8_1:+28286802 Msa1188180:CDS
AAAGTTGAGAACAATAGGTT+AGG 0.450930 8_1:+28284952 Msa1188180:CDS
ATGCTTCAGAATTTGATCAA+TGG 0.454118 8_1:+28286861 Msa1188180:CDS
ATTAAAGTATGGGTGTTGAC+TGG 0.454694 8_1:+28287052 Msa1188180:CDS
TTATTCTGGTTATGTTTGCT+AGG 0.459471 8_1:+28289333 Msa1188180:CDS
TGGATGTAATCAGGTGGACT+TGG 0.459902 8_1:+28288536 Msa1188180:CDS
CGATGTATCAATGATCCAAA+TGG 0.463472 8_1:+28287740 Msa1188180:CDS
ACTGTAGATATAGCAAGTAT+TGG 0.463941 8_1:+28288463 Msa1188180:CDS
AAATTCAAGGTTTCAGTGTA+GGG 0.465525 8_1:+28285761 Msa1188180:CDS
CCTGTGAGATATGGATCAAA+GGG 0.466156 8_1:+28284586 Msa1188180:CDS
GGAGGGTAGGCAAGCTGTAA+TGG 0.466999 8_1:+28287791 Msa1188180:CDS
TGACAATAGCTGATACGTTA+TGG 0.468397 8_1:+28288392 Msa1188180:CDS
ATGAGAGATTTGAATTTGCT+GGG 0.468936 8_1:+28284701 Msa1188180:CDS
GTAGCTCCGTTGCAAAAGGC+TGG 0.475516 8_1:+28287477 Msa1188180:CDS
TGATCCAAATGGCTGATGTT+GGG 0.475834 8_1:+28287751 Msa1188180:CDS
GATAGAAAACAATGAAATCA+TGG 0.476780 8_1:-28289615 None:intergenic
GCAGCAAGTACTTCTATGAT+TGG 0.480124 8_1:+28286899 Msa1188180:CDS
AAGAAGAAGTAGAAGCAAGT+TGG 0.480792 8_1:-28284080 None:intergenic
TGAGAACAATAGGTTAGGAT+TGG 0.482905 8_1:+28284957 Msa1188180:CDS
TGAAAGGTGGTAGAAGAAAA+GGG 0.483991 8_1:-28284146 None:intergenic
TGGAGTTGTTTCAACTCCTA+TGG 0.484075 8_1:+28287261 Msa1188180:CDS
TTGTCTCTCTCGTAAAGAAT+AGG 0.484493 8_1:+28287502 Msa1188180:CDS
GAGGTTGGCAACTATCTTGA+AGG 0.484584 8_1:+28287229 Msa1188180:CDS
GATGTTGGGGTTGGCATCAG+TGG 0.487356 8_1:+28287765 Msa1188180:CDS
AGTCCTCAGCTTTATGGGGC+TGG 0.487402 8_1:+28288331 Msa1188180:CDS
AATTTGCTGGGAATTCGGTT+CGG 0.487604 8_1:+28284713 Msa1188180:CDS
GCTGGGAATTCGGTTCGGAC+CGG 0.489295 8_1:+28284718 Msa1188180:CDS
GGTCAATTTGCACTTGGCCA+TGG 0.490285 8_1:+28288516 Msa1188180:CDS
GACGCTTGTTATTGGGATGC+GGG 0.490460 8_1:+28286832 Msa1188180:CDS
ATACGATTTCTTTCTTGCAC+TGG 0.491560 8_1:+28286171 Msa1188180:CDS
TTAAGTGCGAGAAGCCGAAT+AGG 0.492784 8_1:+28285220 Msa1188180:CDS
TCCTCTAAGTACAATATTCG+AGG 0.493160 8_1:-28285301 None:intergenic
ATGATGAGGCAACAAATTCA+AGG 0.494420 8_1:+28285748 Msa1188180:CDS
TAAGTTATCAATATTATGGA+TGG 0.497507 8_1:+28285592 Msa1188180:CDS
AAGATGCATATGAGGATTGG+AGG 0.498020 8_1:+28284914 Msa1188180:CDS
TAGAAATGTACAAGGATATC+GGG 0.498250 8_1:-28285671 None:intergenic
AAAATGGCAACAACAATAGT+TGG 0.499937 8_1:-28288274 None:intergenic
GTTCCTCTCTTTGCATATTG+GGG 0.500684 8_1:+28288436 Msa1188180:CDS
AATCTATCAGCTTGACTGTA+GGG 0.500945 8_1:-28286237 None:intergenic
GGACGCTTGTTATTGGGATG+CGG 0.502399 8_1:+28286831 Msa1188180:CDS
GGTTGGCATCAGTGGTCAGG+AGG 0.503044 8_1:+28287773 Msa1188180:CDS
CCCTTTGATCCATATCTCAC+AGG 0.503525 8_1:-28284586 None:intergenic
TCTTATTTGTACACGGACAC+TGG 0.506057 8_1:+28287856 Msa1188180:CDS
AGAATCTTTGATCATGAAGT+AGG 0.508208 8_1:-28285718 None:intergenic
CAACACCCATACTTTAATAC+CGG 0.510191 8_1:-28287047 None:intergenic
TCGAGTAGCTCCGTTGCAAA+AGG 0.511123 8_1:+28287473 Msa1188180:CDS
ACTTGGCCATGGATGTAATC+AGG 0.511345 8_1:+28288527 Msa1188180:CDS
TTAAAGTATGGGTGTTGACT+GGG 0.511818 8_1:+28287053 Msa1188180:CDS
AACTTTGAAGAATTCTCAGA+TGG 0.512471 8_1:-28284475 None:intergenic
GGTCTTGAAGCCAAAGATGA+AGG 0.512614 8_1:+28286081 Msa1188180:CDS
CAAATTCAAGGTTTCAGTGT+AGG 0.513211 8_1:+28285760 Msa1188180:CDS
CCGACATGAGGAATGTGAAA+AGG 0.513314 8_1:-28285626 None:intergenic
AACGTAGCTGCGTCTGAGGT+TGG 0.513352 8_1:+28287214 Msa1188180:CDS
ATTTCTCATGCATCCATTTG+GGG 0.515709 8_1:+28288559 Msa1188180:CDS
CTTGAAATCTGAATATCGTC+GGG 0.518724 8_1:-28289417 None:intergenic
TATCTTGAAGGAAGTTCTGA+TGG 0.520260 8_1:+28287241 Msa1188180:CDS
ATGCTTATAGAGCGAACCTC+AGG 0.520554 8_1:+28286319 Msa1188180:CDS
TGATAGTGAACTTGAAGAAG+AGG 0.521242 8_1:+28287321 Msa1188180:CDS
AAAACAAAATCACACGGAAT+CGG 0.522784 8_1:-28285060 None:intergenic
TGCTGTGAAAGATGCATATG+AGG 0.524329 8_1:+28284906 Msa1188180:CDS
TGACAACAGCTATAAATGAA+TGG 0.524690 8_1:+28288215 Msa1188180:CDS
TTGCAAGCAAAGATGGAAAA+CGG 0.526412 8_1:+28286146 Msa1188180:CDS
TGCATGAATTTGATAGTGAT+CGG 0.526715 8_1:+28286648 Msa1188180:CDS
TCTTGAAATCTGAATATCGT+CGG 0.531604 8_1:-28289418 None:intergenic
AAATGGAAAGATATTAGAGT+TGG 0.535651 8_1:+28285009 Msa1188180:CDS
TGAAAGATGCATATGAGGAT+TGG 0.536868 8_1:+28284911 Msa1188180:CDS
TCTATGGAGCTTGTTCGTGT+TGG 0.538618 8_1:+28285690 Msa1188180:CDS
TAAACTGCAGCAAGGTGTAC+CGG 0.538892 8_1:+28287000 Msa1188180:CDS
ACCTGTGAGATATGGATCAA+AGG 0.539126 8_1:+28284585 Msa1188180:CDS
GTCAAGCTGATAGATTATCA+AGG 0.540142 8_1:+28286244 Msa1188180:CDS
ATTGAATACAGACATAATAC+AGG 0.540454 8_1:+28286766 Msa1188180:CDS
CACTATCAAGAATATATACA+AGG 0.541563 8_1:-28287306 None:intergenic
AACTGTTCAAACAAATTCCT+AGG 0.542452 8_1:-28284766 None:intergenic
GGTAGCTTTGGAGAAATGGT+TGG 0.546075 8_1:-28284125 None:intergenic
AGAAGTACTTGCTGCCTCAA+AGG 0.546382 8_1:-28286891 None:intergenic
GTTGGCATCAGTGGTCAGGA+GGG 0.546555 8_1:+28287774 Msa1188180:CDS
TAGGGCTGCTTTGCTTCGCA+AGG 0.549839 8_1:+28286922 Msa1188180:CDS
ATCAAGAATATATACAAGGC+TGG 0.550049 8_1:-28287302 None:intergenic
TTGGACAGCACAATGGTCAA+TGG 0.551043 8_1:-28284039 None:intergenic
GTGAGTCTAATTTGAAGACT+AGG 0.551484 8_1:+28285139 Msa1188180:CDS
AAGTTATCAATATTATGGAT+GGG 0.551657 8_1:+28285593 Msa1188180:CDS
GAAAGCCGGTATTAAAGTAT+GGG 0.552040 8_1:+28287042 Msa1188180:CDS
ACAGAGTCCTCAGCTTTATG+GGG 0.554892 8_1:+28288327 Msa1188180:CDS
ATTCAACTTGCTCATTCTCA+AGG 0.555225 8_1:-28285917 None:intergenic
GCATCAGTGGTCAGGAGGGT+AGG 0.555914 8_1:+28287778 Msa1188180:CDS
CACTCTGACTGAGAACAAGA+TGG 0.558857 8_1:+28285842 Msa1188180:CDS
ATGATCCAAATGGCTGATGT+TGG 0.559216 8_1:+28287750 Msa1188180:CDS
CTTGTATTTATAAAATTAGG+TGG 0.559367 8_1:+28289694 Msa1188180:three_prime_UTR
TGCAACTTTCATATGTGTCA+TGG 0.559490 8_1:+28288591 Msa1188180:CDS
TCAATATTATGGATGGGGAG+TGG 0.560880 8_1:+28285599 Msa1188180:CDS
TAATCTATCAGCTTGACTGT+AGG 0.565808 8_1:-28286238 None:intergenic
AAGAATACTAATTGTGTGGT+TGG 0.566670 8_1:+28285333 Msa1188180:CDS
TCAAGCTGATAGATTATCAA+GGG 0.569002 8_1:+28286245 Msa1188180:CDS
ATGACTCTAGCCATCGGAGA+TGG 0.569025 8_1:+28287534 Msa1188180:CDS
TTACCAACGACTAGGCTACA+TGG 0.572195 8_1:+28287881 Msa1188180:CDS
TATGCAGGTTCAATGTCTTG+GGG 0.575323 8_1:+28286624 Msa1188180:intron
GTTGGTGTTGCCGTGTATTG+TGG 0.575445 8_1:+28285351 Msa1188180:CDS
TTAAGTTTCATGAAAAGGAG+AGG 0.577127 8_1:+28285184 Msa1188180:CDS
AGTCCACCTGATTACATCCA+TGG 0.578614 8_1:-28288533 None:intergenic
ATTGAGTCTCTAAGGAAAGC+CGG 0.578620 8_1:+28287028 Msa1188180:CDS
AAATCAGTGATGAAGATGCT+AGG 0.579456 8_1:+28284647 Msa1188180:CDS
AGTTATCAATATTATGGATG+GGG 0.580201 8_1:+28285594 Msa1188180:CDS
CTCTATAAGCATAAAACCAT+AGG 0.580922 8_1:-28286308 None:intergenic
TAGCTCCGTTGCAAAAGGCT+GGG 0.582525 8_1:+28287478 Msa1188180:CDS
TCAAGACGGCTCCTCTTAGA+CGG 0.582988 8_1:-28285411 None:intergenic
CAAATGGCTGATGTTGGGGT+TGG 0.584450 8_1:+28287756 Msa1188180:CDS
TTCTGGTAGAAATTCAACTA+GGG 0.587363 8_1:+28284534 Msa1188180:CDS
GTTCCTCTCTTATTTGTACA+CGG 0.589784 8_1:+28287849 Msa1188180:CDS
ATATGGATTTCAAGCTACAA+TGG 0.591040 8_1:+28285248 Msa1188180:CDS
GTTCTGGTAGAAATTCAACT+AGG 0.591194 8_1:+28284533 Msa1188180:CDS
AGTTCATTTGTGTCTCAAGA+CGG 0.592225 8_1:-28285425 None:intergenic
TATCAGCTTGACTGTAGGGT+CGG 0.595910 8_1:-28286233 None:intergenic
TTTCAATGCGCTAGTATTTG+GGG 0.596349 8_1:+28285867 Msa1188180:CDS
TTTCTCATGCATCCATTTGG+GGG 0.597711 8_1:+28288560 Msa1188180:CDS
CGGTAGCGCCCAATATGCAT+AGG 0.597956 8_1:-28286967 None:intergenic
CACTGGAATTACCAACGACT+AGG 0.598882 8_1:+28287873 Msa1188180:CDS
AAAGCTATGCTCAACAACTC+AGG 0.598989 8_1:+28285384 Msa1188180:CDS
AAGTACTTCTATGATTGGTA+GGG 0.600513 8_1:+28286904 Msa1188180:CDS
GATCCAAATGGCTGATGTTG+GGG 0.600913 8_1:+28287752 Msa1188180:CDS
CGTCTCACGACCACAATACA+CGG 0.601943 8_1:-28285361 None:intergenic
AAAGAATGTCTGTTATATTG+GGG 0.603285 8_1:+28286672 Msa1188180:CDS
AGGATATCGGGATCATAACC+TGG 0.604549 8_1:-28285659 None:intergenic
AAGCATAAAACCATAGGCAG+CGG 0.609256 8_1:-28286302 None:intergenic
ACTTTGAAGAATTCTCAGAT+GGG 0.609588 8_1:-28284474 None:intergenic
CCATCAATAATCAACGCCAT+AGG 0.614847 8_1:-28287277 None:intergenic
CGAGAAGTTTGAGAATAGAA+GGG 0.615333 8_1:+28289446 Msa1188180:CDS
GCACCATGTAGCCTAGTCGT+TGG 0.617009 8_1:-28287884 None:intergenic
TCGGATGTGTCAACAACAAG+AGG 0.617316 8_1:-28286214 None:intergenic
ACAAGAAGAACAAAAGCCAA+TGG 0.621288 8_1:-28284880 None:intergenic
AAGCTCCATAGAAATGTACA+AGG 0.624504 8_1:-28285679 None:intergenic
TTTGGTCTCAGTGAATGGAA+AGG 0.626806 8_1:+28286060 Msa1188180:intron
GAAACAAACAACGTTGGTGT+TGG 0.631441 8_1:+28284279 Msa1188180:five_prime_UTR
TTGTCGGCGAGTGATCCTAC+CGG 0.632123 8_1:+28285084 Msa1188180:CDS
AGAAGAATAAGAGTGAAGAT+GGG 0.633351 8_1:-28286798 None:intergenic
TCGTCAAAGCTACTAACAAG+CGG 0.635770 8_1:+28287109 Msa1188180:CDS
TCCGATGGCTAGAGTCATGT+CGG 0.637075 8_1:-28287529 None:intergenic
GATGGAAAGAGATTGTCACT+TGG 0.637955 8_1:+28285276 Msa1188180:CDS
CTTCCCCAATATGCAAAGAG+AGG 0.638044 8_1:-28288439 None:intergenic
ATCAATCATTATGTGACCTG+AGG 0.639691 8_1:-28286335 None:intergenic
CTGCAGTTTATCTTCAATAG+CGG 0.645080 8_1:-28286987 None:intergenic
AGATACCATACCATCTCCGA+TGG 0.645447 8_1:-28287544 None:intergenic
AGATTCTAGATTGTATGATG+AGG 0.647520 8_1:+28285734 Msa1188180:CDS
TACCAGTAACCATGAAGTGA+CGG 0.649664 8_1:-28288628 None:intergenic
TGAACATAAGCAACACCGGT+AGG 0.652658 8_1:-28285099 None:intergenic
TGTAGATATAGCAAGTATTG+GGG 0.656699 8_1:+28288465 Msa1188180:CDS
TGGATTTCAAGCTACAATGG+AGG 0.657601 8_1:+28285251 Msa1188180:CDS
CTCTCTCGTAAAGAATAGGA+CGG 0.658957 8_1:+28287506 Msa1188180:CDS
GCCGACATGACTCTAGCCAT+CGG 0.659172 8_1:+28287528 Msa1188180:CDS
TGGCCATGGATGTAATCAGG+TGG 0.664998 8_1:+28288530 Msa1188180:CDS
TGTCCAGCCCCATAAAGCTG+AGG 0.666629 8_1:-28288334 None:intergenic
TAAAGTATGGGTGTTGACTG+GGG 0.668570 8_1:+28287054 Msa1188180:CDS
TACTCGACAACAAAGAACAA+CGG 0.673269 8_1:-28287457 None:intergenic
ACTTAAGAATACTAATTGTG+TGG 0.675064 8_1:+28285329 Msa1188180:CDS
TGCAGATGTGAAGTGAAAGG+TGG 0.676711 8_1:-28284159 None:intergenic
TGTGAATTTGGACAGCACAA+TGG 0.678439 8_1:-28284046 None:intergenic
TGTCCGTGTACAAATAAGAG+AGG 0.679867 8_1:-28287852 None:intergenic
AGTTTGAACATAAGCAACAC+CGG 0.682795 8_1:-28285103 None:intergenic
TGGGGCTGGACAAAGACAAG+AGG 0.684412 8_1:+28288345 Msa1188180:CDS
ATTGAAGATAAACTGCAGCA+AGG 0.685229 8_1:+28286992 Msa1188180:CDS
TGTTGCAGATGTGAAGTGAA+AGG 0.685702 8_1:-28284162 None:intergenic
CAAGCTGATAGATTATCAAG+GGG 0.688461 8_1:+28286246 Msa1188180:CDS
GGTAAACTATAACCGACATG+AGG 0.690892 8_1:-28285638 None:intergenic
ATATTCATGGAGAACAACAA+AGG 0.691556 8_1:+28286356 Msa1188180:CDS
GACAACAAAACAAAATCACA+CGG 0.692270 8_1:-28285066 None:intergenic
ATAAACTTTACAACAAAACG+TGG 0.694069 8_1:-28289378 None:intergenic
GTGTGTGAAACAAACAACGT+TGG 0.752417 8_1:+28284273 Msa1188180:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTATTATGTTTTAAAA+TGG + chr8_1:28288792-28288811 Msa1188180:intron 10.0%
!!! ATTAAGGTTGTTTTAAATAT+GGG - chr8_1:28284372-28284391 None:intergenic 15.0%
!!! TATTAAGGTTGTTTTAAATA+TGG - chr8_1:28284373-28284392 None:intergenic 15.0%
!! TAGTACTAAAACATTTATTA+AGG - chr8_1:28284388-28284407 None:intergenic 15.0%
!!! TTTATTTTTGTGTTGTTATT+TGG + chr8_1:28286042-28286061 Msa1188180:intron 15.0%
!!! TGTAAAGTTATTCATTTTTT+AGG + chr8_1:28289563-28289582 Msa1188180:three_prime_UTR 15.0%
!! CTTCTTGTATTTATAAAATT+AGG + chr8_1:28289691-28289710 Msa1188180:three_prime_UTR 15.0%
!!! TTTTATGTCTTTTTGATGAT+TGG + chr8_1:28284312-28284331 Msa1188180:five_prime_UTR 20.0%
!! TTTAGTACTAGAACAAATTA+TGG + chr8_1:28284398-28284417 Msa1188180:five_prime_UTR 20.0%
!!! AGTTATAAAAGAGTATTTTC+CGG - chr8_1:28284740-28284759 None:intergenic 20.0%
!! GATTAAGTATAGCAATTATA+AGG - chr8_1:28284816-28284835 None:intergenic 20.0%
!!! TCAATTTAAGTTTCATGAAA+AGG + chr8_1:28285179-28285198 Msa1188180:CDS 20.0%
!! AATCCATATATATTCCTATT+CGG - chr8_1:28285237-28285256 None:intergenic 20.0%
!! ATTACCTTATTATAGGAAAT+TGG + chr8_1:28285548-28285567 Msa1188180:CDS 20.0%
!! AAATCCAATTTCCTATAATA+AGG - chr8_1:28285555-28285574 None:intergenic 20.0%
!! TAAGTTATCAATATTATGGA+TGG + chr8_1:28285592-28285611 Msa1188180:CDS 20.0%
!! AAGTTATCAATATTATGGAT+GGG + chr8_1:28285593-28285612 Msa1188180:CDS 20.0%
!! TAAATCTTCATTGATATTCA+AGG - chr8_1:28285787-28285806 None:intergenic 20.0%
!! TTGAATATCAATGAAGATTT+AGG + chr8_1:28285786-28285805 Msa1188180:CDS 20.0%
!! TGAATATCAATGAAGATTTA+GGG + chr8_1:28285787-28285806 Msa1188180:CDS 20.0%
!!! GCAAATTAAATATGTCTTTT+CGG + chr8_1:28285809-28285828 Msa1188180:CDS 20.0%
!! AAAAGAATGTCTGTTATATT+GGG + chr8_1:28286671-28286690 Msa1188180:CDS 20.0%
!! GAAAATGGAAAAGAAATAAA+AGG + chr8_1:28287630-28287649 Msa1188180:intron 20.0%
!! AAAAAGAAATGATACAACAA+AGG - chr8_1:28289544-28289563 None:intergenic 20.0%
!!! AGTTTTTGTTTCATACAAAA+AGG + chr8_1:28289652-28289671 Msa1188180:three_prime_UTR 20.0%
!! CTTGTATTTATAAAATTAGG+TGG + chr8_1:28289694-28289713 Msa1188180:three_prime_UTR 20.0%
! GTGAAAGAAGAAAAAAAAAC+TGG - chr8_1:28284223-28284242 None:intergenic 25.0%
! GTCAAAAAGTCAAATTATGA+TGG + chr8_1:28284441-28284460 Msa1188180:exon 25.0%
!! CTTTTATAACTTTTCTTCCT+AGG + chr8_1:28284749-28284768 Msa1188180:CDS 25.0%
! AAATGGAAAGATATTAGAGT+TGG + chr8_1:28285009-28285028 Msa1188180:CDS 25.0%
! ACTTAAGAATACTAATTGTG+TGG + chr8_1:28285329-28285348 Msa1188180:CDS 25.0%
! TGAATCGATTACCTTATTAT+AGG + chr8_1:28285541-28285560 Msa1188180:CDS 25.0%
!!! TAGGAAATTGGATTTTTCAA+AGG + chr8_1:28285560-28285579 Msa1188180:CDS 25.0%
!!! AGGAAATTGGATTTTTCAAA+GGG + chr8_1:28285561-28285580 Msa1188180:CDS 25.0%
! GAGGTAAGTTATCAATATTA+TGG + chr8_1:28285588-28285607 Msa1188180:CDS 25.0%
! AGTTATCAATATTATGGATG+GGG + chr8_1:28285594-28285613 Msa1188180:CDS 25.0%
! ATAGAAATGTACAAGGATAT+CGG - chr8_1:28285675-28285694 None:intergenic 25.0%
! CACATAATGATTGATATTCA+TGG + chr8_1:28286343-28286362 Msa1188180:CDS 25.0%
! AACATAAAAATGTCTGTTTG+GGG - chr8_1:28286425-28286444 None:intergenic 25.0%
! CAACATAAAAATGTCTGTTT+GGG - chr8_1:28286426-28286445 None:intergenic 25.0%
! TCAACATAAAAATGTCTGTT+TGG - chr8_1:28286427-28286446 None:intergenic 25.0%
!!! TTAGAATGATTTGCTGTTAA+TGG + chr8_1:28286458-28286477 Msa1188180:intron 25.0%
! CATAAAAAAAGGACTACTTT+GGG - chr8_1:28286586-28286605 None:intergenic 25.0%
! TCATAAAAAAAGGACTACTT+TGG - chr8_1:28286587-28286606 None:intergenic 25.0%
!!! ATGAGAGCATTCATAAAAAA+AGG - chr8_1:28286597-28286616 None:intergenic 25.0%
!! TTTTATGAATGCTCTCATTT+TGG + chr8_1:28286599-28286618 Msa1188180:intron 25.0%
!! TTTATGAATGCTCTCATTTT+GGG + chr8_1:28286600-28286619 Msa1188180:intron 25.0%
! GAAAAGAATGTCTGTTATAT+TGG + chr8_1:28286670-28286689 Msa1188180:CDS 25.0%
! AAAGAATGTCTGTTATATTG+GGG + chr8_1:28286672-28286691 Msa1188180:CDS 25.0%
! ATTGAATACAGACATAATAC+AGG + chr8_1:28286766-28286785 Msa1188180:CDS 25.0%
! AGAAAATAACCTATGCATAT+TGG + chr8_1:28286958-28286977 Msa1188180:CDS 25.0%
! GAAAATAACCTATGCATATT+GGG + chr8_1:28286959-28286978 Msa1188180:CDS 25.0%
! CACTATCAAGAATATATACA+AGG - chr8_1:28287309-28287328 None:intergenic 25.0%
! TTTCGTTCTCATTATTTGAA+GGG - chr8_1:28287598-28287617 None:intergenic 25.0%
! ATTTCGTTCTCATTATTTGA+AGG - chr8_1:28287599-28287618 None:intergenic 25.0%
! AATAATGAGAACGAAATACA+AGG + chr8_1:28287602-28287621 Msa1188180:intron 25.0%
! AAATACAAGGATAGAGAAAA+TGG + chr8_1:28287615-28287634 Msa1188180:intron 25.0%
! AGGCACATATAGAAATAAAT+TGG - chr8_1:28288040-28288059 None:intergenic 25.0%
!!! CCAAAACAATTTTTTGTTGT+AGG - chr8_1:28288371-28288390 None:intergenic 25.0%
!! CCTACAACAAAAAATTGTTT+TGG + chr8_1:28288368-28288387 Msa1188180:CDS 25.0%
!! GACTATTTCGATAGTTATTT+TGG + chr8_1:28288495-28288514 Msa1188180:CDS 25.0%
!! TTGATTTTGCAATCCATAAA+GGG - chr8_1:28288968-28288987 None:intergenic 25.0%
!!! ATTGATTTTGCAATCCATAA+AGG - chr8_1:28288969-28288988 None:intergenic 25.0%
! ATAAACTTTACAACAAAACG+TGG - chr8_1:28289381-28289400 None:intergenic 25.0%
! GATAGAAAACAATGAAATCA+TGG - chr8_1:28289618-28289637 None:intergenic 25.0%
!! TTTCATTGTTTTCTATCCAA+AGG + chr8_1:28289621-28289640 Msa1188180:three_prime_UTR 25.0%
!! TTCATTGTTTTCTATCCAAA+GGG + chr8_1:28289622-28289641 Msa1188180:three_prime_UTR 25.0%
! ATTTTCCAGATTTGAACTTC+TGG + chr8_1:28284184-28284203 Msa1188180:five_prime_UTR 30.0%
! TTTTCCAGATTTGAACTTCT+GGG + chr8_1:28284185-28284204 Msa1188180:five_prime_UTR 30.0%
! ACTTTGAAGAATTCTCAGAT+GGG - chr8_1:28284477-28284496 None:intergenic 30.0%
! AACTTTGAAGAATTCTCAGA+TGG - chr8_1:28284478-28284497 None:intergenic 30.0%
TTCTGGTAGAAATTCAACTA+GGG + chr8_1:28284534-28284553 Msa1188180:CDS 30.0%
AATCTCTCATTTGTTCTATC+AGG - chr8_1:28284691-28284710 None:intergenic 30.0%
AATGAGAGATTTGAATTTGC+TGG + chr8_1:28284700-28284719 Msa1188180:CDS 30.0%
! ATGAGAGATTTGAATTTGCT+GGG + chr8_1:28284701-28284720 Msa1188180:CDS 30.0%
!! ATTTGAATTTGCTGGGAATT+CGG + chr8_1:28284708-28284727 Msa1188180:CDS 30.0%
AACTGTTCAAACAAATTCCT+AGG - chr8_1:28284769-28284788 None:intergenic 30.0%
CAGATAAAGTTGAGAACAAT+AGG + chr8_1:28284947-28284966 Msa1188180:CDS 30.0%
AAAGTTGAGAACAATAGGTT+AGG + chr8_1:28284952-28284971 Msa1188180:CDS 30.0%
!!! TTAGGATTGGTTTTGGTTAA+TGG + chr8_1:28284970-28284989 Msa1188180:CDS 30.0%
GTCATTTCATTGAGAAGAAA+TGG + chr8_1:28284992-28285011 Msa1188180:CDS 30.0%
AAAACAAAATCACACGGAAT+CGG - chr8_1:28285063-28285082 None:intergenic 30.0%
GACAACAAAACAAAATCACA+CGG - chr8_1:28285069-28285088 None:intergenic 30.0%
!!! GTGTGATTTTGTTTTGTTGT+CGG + chr8_1:28285068-28285087 Msa1188180:CDS 30.0%
GTTCAAACTCTTAATCTAGA+TGG + chr8_1:28285117-28285136 Msa1188180:CDS 30.0%
TTAAGTTTCATGAAAAGGAG+AGG + chr8_1:28285184-28285203 Msa1188180:CDS 30.0%
AAGCCGAATAGGAATATATA+TGG + chr8_1:28285231-28285250 Msa1188180:CDS 30.0%
ATATGGATTTCAAGCTACAA+TGG + chr8_1:28285248-28285267 Msa1188180:CDS 30.0%
AAGAATACTAATTGTGTGGT+TGG + chr8_1:28285333-28285352 Msa1188180:CDS 30.0%
TAGAAATGTACAAGGATATC+GGG - chr8_1:28285674-28285693 None:intergenic 30.0%
GATATCCTTGTACATTTCTA+TGG + chr8_1:28285674-28285693 Msa1188180:CDS 30.0%
AGAATCTTTGATCATGAAGT+AGG - chr8_1:28285721-28285740 None:intergenic 30.0%
AGATTCTAGATTGTATGATG+AGG + chr8_1:28285734-28285753 Msa1188180:CDS 30.0%
AAATTCAAGGTTTCAGTGTA+GGG + chr8_1:28285761-28285780 Msa1188180:CDS 30.0%
TTAACTTTCACCTTCATCTT+TGG - chr8_1:28286094-28286113 None:intergenic 30.0%
CTTATGCAATTAGCAAAAAG+TGG + chr8_1:28286121-28286140 Msa1188180:CDS 30.0%
TCAAGCTGATAGATTATCAA+GGG + chr8_1:28286245-28286264 Msa1188180:CDS 30.0%
CTCTATAAGCATAAAACCAT+AGG - chr8_1:28286311-28286330 None:intergenic 30.0%
ATATTCATGGAGAACAACAA+AGG + chr8_1:28286356-28286375 Msa1188180:CDS 30.0%
!! TGCATGAATTTGATAGTGAT+CGG + chr8_1:28286648-28286667 Msa1188180:CDS 30.0%
AGAAGAATAAGAGTGAAGAT+GGG - chr8_1:28286801-28286820 None:intergenic 30.0%
ATGCTTCAGAATTTGATCAA+TGG + chr8_1:28286861-28286880 Msa1188180:CDS 30.0%
AAGTACTTCTATGATTGGTA+GGG + chr8_1:28286904-28286923 Msa1188180:CDS 30.0%
ATCAAGAATATATACAAGGC+TGG - chr8_1:28287305-28287324 None:intergenic 30.0%
! GGAAAAGAAATAAAAGGCAT+CGG + chr8_1:28287636-28287655 Msa1188180:intron 30.0%
CTTTCTCCTTCATATGTTAT+AGG + chr8_1:28287711-28287730 Msa1188180:intron 30.0%
TTAGCACCTATAACATATGA+AGG - chr8_1:28287720-28287739 None:intergenic 30.0%
! TCTTTGTGCTAATTCTGTTT+TGG + chr8_1:28287931-28287950 Msa1188180:CDS 30.0%
TGACAACAGCTATAAATGAA+TGG + chr8_1:28288215-28288234 Msa1188180:CDS 30.0%
AAAATGGCAACAACAATAGT+TGG - chr8_1:28288277-28288296 None:intergenic 30.0%
ACTAAGATCCTTGTCAAAAA+TGG - chr8_1:28288293-28288312 None:intergenic 30.0%
TTGACAAGGATCTTAGTAAA+AGG + chr8_1:28288296-28288315 Msa1188180:CDS 30.0%
ACTGTAGATATAGCAAGTAT+TGG + chr8_1:28288463-28288482 Msa1188180:CDS 30.0%
CTGTAGATATAGCAAGTATT+GGG + chr8_1:28288464-28288483 Msa1188180:CDS 30.0%
! TGTAGATATAGCAAGTATTG+GGG + chr8_1:28288465-28288484 Msa1188180:CDS 30.0%
!!! TATTTTGGTCAATTTGCACT+TGG + chr8_1:28288510-28288529 Msa1188180:CDS 30.0%
! TGATTTTGCAATCCATAAAG+GGG - chr8_1:28288967-28288986 None:intergenic 30.0%
!! CAAAGTTGACTTGTAAGATA+AGG - chr8_1:28289057-28289076 None:intergenic 30.0%
ATCTTACAAGTCAACTTTGT+AGG + chr8_1:28289058-28289077 Msa1188180:intron 30.0%
TCTTACAAGTCAACTTTGTA+GGG + chr8_1:28289059-28289078 Msa1188180:intron 30.0%
!! TGTTTCTATCCTAGTCTTAT+TGG + chr8_1:28289118-28289137 Msa1188180:intron 30.0%
! TTATTCTGGTTATGTTTGCT+AGG + chr8_1:28289333-28289352 Msa1188180:CDS 30.0%
TCTTGAAATCTGAATATCGT+CGG - chr8_1:28289421-28289440 None:intergenic 30.0%
CGTCAGAATATTATTGATGT+TGG + chr8_1:28289589-28289608 Msa1188180:three_prime_UTR 30.0%
AAGAAGAAGTAGAAGCAAGT+TGG - chr8_1:28284083-28284102 None:intergenic 35.0%
TGAAAGGTGGTAGAAGAAAA+GGG - chr8_1:28284149-28284168 None:intergenic 35.0%
TTCTTCTTTCACTCTGTCTT+TGG + chr8_1:28284231-28284250 Msa1188180:five_prime_UTR 35.0%
TCATCATCAAGAAGAAGTTC+TGG + chr8_1:28284517-28284536 Msa1188180:CDS 35.0%
GTTCTGGTAGAAATTCAACT+AGG + chr8_1:28284533-28284552 Msa1188180:CDS 35.0%
AAATCAGTGATGAAGATGCT+AGG + chr8_1:28284647-28284666 Msa1188180:CDS 35.0%
!! TTACCTCAACTAGCTGTTTT+TGG + chr8_1:28284838-28284857 Msa1188180:CDS 35.0%
! AGGTGTATCAATTTTGCCAT+TGG + chr8_1:28284864-28284883 Msa1188180:CDS 35.0%
ACAAGAAGAACAAAAGCCAA+TGG - chr8_1:28284883-28284902 None:intergenic 35.0%
TGAAAGATGCATATGAGGAT+TGG + chr8_1:28284911-28284930 Msa1188180:CDS 35.0%
TGAGAACAATAGGTTAGGAT+TGG + chr8_1:28284957-28284976 Msa1188180:CDS 35.0%
!!! CAATAGGTTAGGATTGGTTT+TGG + chr8_1:28284963-28284982 Msa1188180:CDS 35.0%
AGTTTGAACATAAGCAACAC+CGG - chr8_1:28285106-28285125 None:intergenic 35.0%
GTGAGTCTAATTTGAAGACT+AGG + chr8_1:28285139-28285158 Msa1188180:CDS 35.0%
TCCTCGAATATTGTACTTAG+AGG + chr8_1:28285300-28285319 Msa1188180:CDS 35.0%
TCCTCTAAGTACAATATTCG+AGG - chr8_1:28285304-28285323 None:intergenic 35.0%
AGTTCATTTGTGTCTCAAGA+CGG - chr8_1:28285428-28285447 None:intergenic 35.0%
!! GGATTTTTCAAAGGGAAAAG+AGG + chr8_1:28285569-28285588 Msa1188180:CDS 35.0%
AAGCTCCATAGAAATGTACA+AGG - chr8_1:28285682-28285701 None:intergenic 35.0%
ATGATGAGGCAACAAATTCA+AGG + chr8_1:28285748-28285767 Msa1188180:CDS 35.0%
CAAATTCAAGGTTTCAGTGT+AGG + chr8_1:28285760-28285779 Msa1188180:CDS 35.0%
! TATGTCTTTTCGGACAAAAC+TGG + chr8_1:28285819-28285838 Msa1188180:CDS 35.0%
AGTTTCAATGCGCTAGTATT+TGG + chr8_1:28285865-28285884 Msa1188180:CDS 35.0%
GTTTCAATGCGCTAGTATTT+GGG + chr8_1:28285866-28285885 Msa1188180:CDS 35.0%
TTTCAATGCGCTAGTATTTG+GGG + chr8_1:28285867-28285886 Msa1188180:CDS 35.0%
! ATTCAACTTGCTCATTCTCA+AGG - chr8_1:28285920-28285939 None:intergenic 35.0%
! CAAGTTGAATACTCTCTTCA+AGG + chr8_1:28285930-28285949 Msa1188180:CDS 35.0%
! TGTTATTTGGTCTCAGTGAA+TGG + chr8_1:28286055-28286074 Msa1188180:intron 35.0%
TTGCAAGCAAAGATGGAAAA+CGG + chr8_1:28286146-28286165 Msa1188180:CDS 35.0%
ATACGATTTCTTTCTTGCAC+TGG + chr8_1:28286171-28286190 Msa1188180:CDS 35.0%
AATCTATCAGCTTGACTGTA+GGG - chr8_1:28286240-28286259 None:intergenic 35.0%
TAATCTATCAGCTTGACTGT+AGG - chr8_1:28286241-28286260 None:intergenic 35.0%
GTCAAGCTGATAGATTATCA+AGG + chr8_1:28286244-28286263 Msa1188180:CDS 35.0%
CAAGCTGATAGATTATCAAG+GGG + chr8_1:28286246-28286265 Msa1188180:CDS 35.0%
ATCAATCATTATGTGACCTG+AGG - chr8_1:28286338-28286357 None:intergenic 35.0%
TAAAGCAGTTGAAGGAGTTA+AGG - chr8_1:28286548-28286567 None:intergenic 35.0%
!! TACTTTGGGACCTAATTCAA+GGG - chr8_1:28286572-28286591 None:intergenic 35.0%
CAGAAGAATAAGAGTGAAGA+TGG - chr8_1:28286802-28286821 None:intergenic 35.0%
TCTTCACTCTTATTCTTCTG+TGG + chr8_1:28286802-28286821 Msa1188180:CDS 35.0%
CTTCACTCTTATTCTTCTGT+GGG + chr8_1:28286803-28286822 Msa1188180:CDS 35.0%
CAAGTACTTCTATGATTGGT+AGG + chr8_1:28286903-28286922 Msa1188180:CDS 35.0%
CTGCAGTTTATCTTCAATAG+CGG - chr8_1:28286990-28287009 None:intergenic 35.0%
ATTGAAGATAAACTGCAGCA+AGG + chr8_1:28286992-28287011 Msa1188180:CDS 35.0%
GAAAGCCGGTATTAAAGTAT+GGG + chr8_1:28287042-28287061 Msa1188180:CDS 35.0%
CAACACCCATACTTTAATAC+CGG - chr8_1:28287050-28287069 None:intergenic 35.0%
!! ATTAAAGTATGGGTGTTGAC+TGG + chr8_1:28287052-28287071 Msa1188180:CDS 35.0%
!! TTAAAGTATGGGTGTTGACT+GGG + chr8_1:28287053-28287072 Msa1188180:CDS 35.0%
CAAGAAACTGCCATATCAAT+TGG + chr8_1:28287082-28287101 Msa1188180:CDS 35.0%
! TATCTTGAAGGAAGTTCTGA+TGG + chr8_1:28287241-28287260 Msa1188180:CDS 35.0%
! TGATAGTGAACTTGAAGAAG+AGG + chr8_1:28287321-28287340 Msa1188180:CDS 35.0%
TACTCGACAACAAAGAACAA+CGG - chr8_1:28287460-28287479 None:intergenic 35.0%
TTGTCTCTCTCGTAAAGAAT+AGG + chr8_1:28287502-28287521 Msa1188180:CDS 35.0%
CGATGTATCAATGATCCAAA+TGG + chr8_1:28287740-28287759 Msa1188180:CDS 35.0%
! AATGGCTTCAGATTTTGCAA+TGG + chr8_1:28287809-28287828 Msa1188180:CDS 35.0%
! ATGGCTTCAGATTTTGCAAT+GGG + chr8_1:28287810-28287829 Msa1188180:CDS 35.0%
! GTTCCTCTCTTATTTGTACA+CGG + chr8_1:28287849-28287868 Msa1188180:CDS 35.0%
!!! TGTTGTTGCCATTTTTGACA+AGG + chr8_1:28288282-28288301 Msa1188180:CDS 35.0%
TGACAATAGCTGATACGTTA+TGG + chr8_1:28288392-28288411 Msa1188180:CDS 35.0%
TTGTTCCTCTCTTTGCATAT+TGG + chr8_1:28288434-28288453 Msa1188180:CDS 35.0%
TGTTCCTCTCTTTGCATATT+GGG + chr8_1:28288435-28288454 Msa1188180:CDS 35.0%
GATTTCTCATGCATCCATTT+GGG + chr8_1:28288558-28288577 Msa1188180:CDS 35.0%
ATTTCTCATGCATCCATTTG+GGG + chr8_1:28288559-28288578 Msa1188180:CDS 35.0%
TGCAACTTTCATATGTGTCA+TGG + chr8_1:28288591-28288610 Msa1188180:CDS 35.0%
CATGACATGACATGACTAAT+TGG - chr8_1:28288727-28288746 None:intergenic 35.0%
CCAACGTAGACTTATTTAAG+AGG - chr8_1:28288992-28289011 None:intergenic 35.0%
CCTCTTAAATAAGTCTACGT+TGG + chr8_1:28288989-28289008 Msa1188180:intron 35.0%
AATAAGTCTACGTTGGATAG+TGG + chr8_1:28288996-28289015 Msa1188180:intron 35.0%
TGTTCCAAATGTTCAATCCT+AGG + chr8_1:28289154-28289173 Msa1188180:intron 35.0%
ACTATTTAAGCCATCCAATG+TGG - chr8_1:28289204-28289223 None:intergenic 35.0%
ACATGTGTACAAAACTTTGC+AGG + chr8_1:28289283-28289302 Msa1188180:intron 35.0%
CATGTGTACAAAACTTTGCA+GGG + chr8_1:28289284-28289303 Msa1188180:intron 35.0%
CTTGAAATCTGAATATCGTC+GGG - chr8_1:28289420-28289439 None:intergenic 35.0%
TCGAGAAGTTTGAGAATAGA+AGG + chr8_1:28289445-28289464 Msa1188180:CDS 35.0%
CGAGAAGTTTGAGAATAGAA+GGG + chr8_1:28289446-28289465 Msa1188180:CDS 35.0%
TTTGAGAATAGAAGGGTCAA+TGG + chr8_1:28289453-28289472 Msa1188180:CDS 35.0%
CAACACTAGTGTTATCTTTG+TGG - chr8_1:28289513-28289532 None:intergenic 35.0%
CAAAAACTCTATCTACCCTT+TGG - chr8_1:28289640-28289659 None:intergenic 35.0%
TGTGAATTTGGACAGCACAA+TGG - chr8_1:28284049-28284068 None:intergenic 40.0%
GTGAGAGATGCTTGTGAATT+TGG - chr8_1:28284061-28284080 None:intergenic 40.0%
!! AAAGGGTAGCTTTGGAGAAA+TGG - chr8_1:28284132-28284151 None:intergenic 40.0%
GTAGAAGAAAAGGGTAGCTT+TGG - chr8_1:28284140-28284159 None:intergenic 40.0%
GTGAAAGGTGGTAGAAGAAA+AGG - chr8_1:28284150-28284169 None:intergenic 40.0%
TGTTGCAGATGTGAAGTGAA+AGG - chr8_1:28284165-28284184 None:intergenic 40.0%
CAAACCCAGAAGTTCAAATC+TGG - chr8_1:28284192-28284211 None:intergenic 40.0%
GTGTGTGAAACAAACAACGT+TGG + chr8_1:28284273-28284292 Msa1188180:five_prime_UTR 40.0%
GAAACAAACAACGTTGGTGT+TGG + chr8_1:28284279-28284298 Msa1188180:five_prime_UTR 40.0%
!! TCAACTAGGGAAGTCACTTT+TGG + chr8_1:28284547-28284566 Msa1188180:CDS 40.0%
TGATCCATATCTCACAGGTT+TGG - chr8_1:28284584-28284603 None:intergenic 40.0%
ACCTGTGAGATATGGATCAA+AGG + chr8_1:28284585-28284604 Msa1188180:CDS 40.0%
CCTGTGAGATATGGATCAAA+GGG + chr8_1:28284586-28284605 Msa1188180:CDS 40.0%
!! AATTTGCTGGGAATTCGGTT+CGG + chr8_1:28284713-28284732 Msa1188180:CDS 40.0%
CTACCAAAAACAGCTAGTTG+AGG - chr8_1:28284844-28284863 None:intergenic 40.0%
!!! CAACTAGCTGTTTTTGGTAG+AGG + chr8_1:28284844-28284863 Msa1188180:CDS 40.0%
TGCTGTGAAAGATGCATATG+AGG + chr8_1:28284906-28284925 Msa1188180:CDS 40.0%
AAGATGCATATGAGGATTGG+AGG + chr8_1:28284914-28284933 Msa1188180:CDS 40.0%
CATGAAAAGGAGAGGTTTAG+TGG + chr8_1:28285192-28285211 Msa1188180:CDS 40.0%
TGGATTTCAAGCTACAATGG+AGG + chr8_1:28285251-28285270 Msa1188180:CDS 40.0%
GATGGAAAGAGATTGTCACT+TGG + chr8_1:28285276-28285295 Msa1188180:CDS 40.0%
AAAGCTATGCTCAACAACTC+AGG + chr8_1:28285384-28285403 Msa1188180:CDS 40.0%
TCAATATTATGGATGGGGAG+TGG + chr8_1:28285599-28285618 Msa1188180:CDS 40.0%
! CCTTTTCACATTCCTCATGT+CGG + chr8_1:28285626-28285645 Msa1188180:CDS 40.0%
GGTAAACTATAACCGACATG+AGG - chr8_1:28285641-28285660 None:intergenic 40.0%
! CATGTCGGTTATAGTTTACC+AGG + chr8_1:28285641-28285660 Msa1188180:CDS 40.0%
TTTGGTCTCAGTGAATGGAA+AGG + chr8_1:28286060-28286079 Msa1188180:intron 40.0%
! AGTGGATTTGCAAGCAAAGA+TGG + chr8_1:28286139-28286158 Msa1188180:CDS 40.0%
TATGTCAACGCTTGTTCATC+TGG - chr8_1:28286277-28286296 None:intergenic 40.0%
AAGCATAAAACCATAGGCAG+CGG - chr8_1:28286305-28286324 None:intergenic 40.0%
ACTGCTTTAGCCCTTGAATT+AGG + chr8_1:28286559-28286578 Msa1188180:intron 40.0%
!! CTACTTTGGGACCTAATTCA+AGG - chr8_1:28286573-28286592 None:intergenic 40.0%
CTATGCAGGTTCAATGTCTT+GGG + chr8_1:28286623-28286642 Msa1188180:intron 40.0%
TATGCAGGTTCAATGTCTTG+GGG + chr8_1:28286624-28286643 Msa1188180:intron 40.0%
ATTGGGGTGCAATGACAATT+CGG + chr8_1:28286688-28286707 Msa1188180:CDS 40.0%
! TCGGTGAAACTTTTCGTCAA+AGG + chr8_1:28286707-28286726 Msa1188180:CDS 40.0%
! CGGTGAAACTTTTCGTCAAA+GGG + chr8_1:28286708-28286727 Msa1188180:CDS 40.0%
! GGTGAAACTTTTCGTCAAAG+GGG + chr8_1:28286709-28286728 Msa1188180:CDS 40.0%
CTTATTCTTCTGTGGGTTTG+AGG + chr8_1:28286810-28286829 Msa1188180:CDS 40.0%
!! GTTTGAGGACGCTTGTTATT+GGG + chr8_1:28286825-28286844 Msa1188180:CDS 40.0%
! TCAATGGCATTTTGCCTTTG+AGG + chr8_1:28286877-28286896 Msa1188180:CDS 40.0%
GCAGCAAGTACTTCTATGAT+TGG + chr8_1:28286899-28286918 Msa1188180:CDS 40.0%
CTTAGAGACTCAATAGCTTC+CGG - chr8_1:28287022-28287041 None:intergenic 40.0%
! ATTGAGTCTCTAAGGAAAGC+CGG + chr8_1:28287028-28287047 Msa1188180:CDS 40.0%
GGAAAGCCGGTATTAAAGTA+TGG + chr8_1:28287041-28287060 Msa1188180:CDS 40.0%
!! TAAAGTATGGGTGTTGACTG+GGG + chr8_1:28287054-28287073 Msa1188180:CDS 40.0%
TGACGAGTAGCCAATTGATA+TGG - chr8_1:28287095-28287114 None:intergenic 40.0%
TCGTCAAAGCTACTAACAAG+CGG + chr8_1:28287109-28287128 Msa1188180:CDS 40.0%
! TGGAGTTGTTTCAACTCCTA+TGG + chr8_1:28287261-28287280 Msa1188180:CDS 40.0%
CCATCAATAATCAACGCCAT+AGG - chr8_1:28287280-28287299 None:intergenic 40.0%
!! CCTATGGCGTTGATTATTGA+TGG + chr8_1:28287277-28287296 Msa1188180:CDS 40.0%
! ATGTGCTGATAGATCTCAGA+TGG + chr8_1:28287345-28287364 Msa1188180:intron 40.0%
CTCTCTCGTAAAGAATAGGA+CGG + chr8_1:28287506-28287525 Msa1188180:CDS 40.0%
ATGATCCAAATGGCTGATGT+TGG + chr8_1:28287750-28287769 Msa1188180:CDS 40.0%
TGATCCAAATGGCTGATGTT+GGG + chr8_1:28287751-28287770 Msa1188180:CDS 40.0%
! TGGCTTCAGATTTTGCAATG+GGG + chr8_1:28287811-28287830 Msa1188180:CDS 40.0%
! ATTTTGCAATGGGGCAGTTT+CGG + chr8_1:28287820-28287839 Msa1188180:CDS 40.0%
TGTCCGTGTACAAATAAGAG+AGG - chr8_1:28287855-28287874 None:intergenic 40.0%
! TCTTATTTGTACACGGACAC+TGG + chr8_1:28287856-28287875 Msa1188180:CDS 40.0%
AAACTATGACCATTGCTCTG+TGG + chr8_1:28288101-28288120 Msa1188180:intron 40.0%
TCTTAAAAGCCACAGAGCAA+TGG - chr8_1:28288113-28288132 None:intergenic 40.0%
!!! TCTGTGGCTTTTAAGATGCA+TGG + chr8_1:28288117-28288136 Msa1188180:intron 40.0%
! TACAGAGTCCTCAGCTTTAT+GGG + chr8_1:28288326-28288345 Msa1188180:CDS 40.0%
GTTCCTCTCTTTGCATATTG+GGG + chr8_1:28288436-28288455 Msa1188180:CDS 40.0%
!! TAGCAAGTATTGGGGATCTT+TGG + chr8_1:28288473-28288492 Msa1188180:CDS 40.0%
GGATTTCTCATGCATCCATT+TGG + chr8_1:28288557-28288576 Msa1188180:CDS 40.0%
TTTCTCATGCATCCATTTGG+GGG + chr8_1:28288560-28288579 Msa1188180:CDS 40.0%
TACCAGTAACCATGAAGTGA+CGG - chr8_1:28288631-28288650 None:intergenic 40.0%
ATCCAACGCTGTAAAACACA+AGG + chr8_1:28288673-28288692 Msa1188180:intron 40.0%
TTCAATTCCTAACTCGTGTG+TGG + chr8_1:28288886-28288905 Msa1188180:intron 40.0%
TGTGTGGAGAAAACTCTGTT+GGG + chr8_1:28288902-28288921 Msa1188180:intron 40.0%
! GAACATTTGGAACATGACCT+AGG - chr8_1:28289148-28289167 None:intergenic 40.0%
CAAGCCTAGGATTGAACATT+TGG - chr8_1:28289161-28289180 None:intergenic 40.0%
TTCAATCCTAGGCTTGAGAA+GGG + chr8_1:28289165-28289184 Msa1188180:intron 40.0%
!!! TTGCAGGGCTATTTTTGATG+TGG + chr8_1:28289299-28289318 Msa1188180:intron 40.0%
TTGGACAGCACAATGGTCAA+TGG - chr8_1:28284042-28284061 None:intergenic 45.0%
!! GGTAGCTTTGGAGAAATGGT+TGG - chr8_1:28284128-28284147 None:intergenic 45.0%
TGCAGATGTGAAGTGAAAGG+TGG - chr8_1:28284162-28284181 None:intergenic 45.0%
GAGTCCAAACCTGTGAGATA+TGG + chr8_1:28284577-28284596 Msa1188180:CDS 45.0%
CCCTTTGATCCATATCTCAC+AGG - chr8_1:28284589-28284608 None:intergenic 45.0%
TGAACATAAGCAACACCGGT+AGG - chr8_1:28285102-28285121 None:intergenic 45.0%
TTAAGTGCGAGAAGCCGAAT+AGG + chr8_1:28285220-28285239 Msa1188180:CDS 45.0%
CAAGCTACAATGGAGGTTGA+TGG + chr8_1:28285258-28285277 Msa1188180:CDS 45.0%
CCGACATGAGGAATGTGAAA+AGG - chr8_1:28285629-28285648 None:intergenic 45.0%
AGGATATCGGGATCATAACC+TGG - chr8_1:28285662-28285681 None:intergenic 45.0%
! TCTATGGAGCTTGTTCGTGT+TGG + chr8_1:28285690-28285709 Msa1188180:CDS 45.0%
CACTCTGACTGAGAACAAGA+TGG + chr8_1:28285842-28285861 Msa1188180:CDS 45.0%
! AACTTGCTCATTCTCAAGGC+TGG - chr8_1:28285916-28285935 None:intergenic 45.0%
GGTCTTGAAGCCAAAGATGA+AGG + chr8_1:28286081-28286100 Msa1188180:CDS 45.0%
TCGGATGTGTCAACAACAAG+AGG - chr8_1:28286217-28286236 None:intergenic 45.0%
TATCAGCTTGACTGTAGGGT+CGG - chr8_1:28286236-28286255 None:intergenic 45.0%
ATGCTTATAGAGCGAACCTC+AGG + chr8_1:28286319-28286338 Msa1188180:CDS 45.0%
TTGAAGGAGTTAAGGAGCTG+GGG - chr8_1:28286540-28286559 None:intergenic 45.0%
GTTGAAGGAGTTAAGGAGCT+GGG - chr8_1:28286541-28286560 None:intergenic 45.0%
AGTTGAAGGAGTTAAGGAGC+TGG - chr8_1:28286542-28286561 None:intergenic 45.0%
TCAAGGGCTAAAGCAGTTGA+AGG - chr8_1:28286556-28286575 None:intergenic 45.0%
GCTATGCAGGTTCAATGTCT+TGG + chr8_1:28286622-28286641 Msa1188180:intron 45.0%
! GAAACTTTTCGTCAAAGGGG+CGG + chr8_1:28286712-28286731 Msa1188180:CDS 45.0%
!! GGTTTGAGGACGCTTGTTAT+TGG + chr8_1:28286824-28286843 Msa1188180:CDS 45.0%
!! AGAAGTACTTGCTGCCTCAA+AGG - chr8_1:28286894-28286913 None:intergenic 45.0%
TAAACTGCAGCAAGGTGTAC+CGG + chr8_1:28287000-28287019 Msa1188180:CDS 45.0%
CGGAAGCTATTGAGTCTCTA+AGG + chr8_1:28287020-28287039 Msa1188180:CDS 45.0%
AAAAAACGTAGCTGCGTCTG+AGG + chr8_1:28287210-28287229 Msa1188180:CDS 45.0%
GAGGTTGGCAACTATCTTGA+AGG + chr8_1:28287229-28287248 Msa1188180:CDS 45.0%
AGAGCTGGAATCAACAGCAT+TGG - chr8_1:28287416-28287435 None:intergenic 45.0%
TTCGTGCAAGTTCAAAGAGC+TGG - chr8_1:28287431-28287450 None:intergenic 45.0%
! ACAATCCCAGCCTTTTGCAA+CGG - chr8_1:28287486-28287505 None:intergenic 45.0%
AGATACCATACCATCTCCGA+TGG - chr8_1:28287547-28287566 None:intergenic 45.0%
GATCCAAATGGCTGATGTTG+GGG + chr8_1:28287752-28287771 Msa1188180:CDS 45.0%
CACTGGAATTACCAACGACT+AGG + chr8_1:28287873-28287892 Msa1188180:CDS 45.0%
TTACCAACGACTAGGCTACA+TGG + chr8_1:28287881-28287900 Msa1188180:CDS 45.0%
GTTGTGTGTCTTTGTCTACC+AGG + chr8_1:28288167-28288186 Msa1188180:intron 45.0%
AGCAGTGAAGAGAACATACC+TGG - chr8_1:28288188-28288207 None:intergenic 45.0%
CTACAGAGTCCTCAGCTTTA+TGG + chr8_1:28288325-28288344 Msa1188180:CDS 45.0%
! ACAGAGTCCTCAGCTTTATG+GGG + chr8_1:28288327-28288346 Msa1188180:CDS 45.0%
CTTCCCCAATATGCAAAGAG+AGG - chr8_1:28288442-28288461 None:intergenic 45.0%
ACTTGGCCATGGATGTAATC+AGG + chr8_1:28288527-28288546 Msa1188180:CDS 45.0%
AGTCCACCTGATTACATCCA+TGG - chr8_1:28288536-28288555 None:intergenic 45.0%
! TGGATGTAATCAGGTGGACT+TGG + chr8_1:28288536-28288555 Msa1188180:CDS 45.0%
TGCAATGATAGACCCCCAAA+TGG - chr8_1:28288575-28288594 None:intergenic 45.0%
GATGCTATACCGTCACTTCA+TGG + chr8_1:28288619-28288638 Msa1188180:CDS 45.0%
TACCGTCACTTCATGGTTAC+TGG + chr8_1:28288626-28288645 Msa1188180:CDS 45.0%
! CTCCTTGTGTTTTACAGCGT+TGG - chr8_1:28288678-28288697 None:intergenic 45.0%
CAGAGTCACCAACATGTGAT+AGG + chr8_1:28288817-28288836 Msa1188180:intron 45.0%
CACTCTGACCTATCACATGT+TGG - chr8_1:28288828-28288847 None:intergenic 45.0%
CAACATGTGATAGGTCAGAG+TGG + chr8_1:28288826-28288845 Msa1188180:intron 45.0%
! GTTTTCTCCACACACGAGTT+AGG - chr8_1:28288896-28288915 None:intergenic 45.0%
GTGTGTGGAGAAAACTCTGT+TGG + chr8_1:28288901-28288920 Msa1188180:intron 45.0%
GTGTGGAGAAAACTCTGTTG+GGG + chr8_1:28288903-28288922 Msa1188180:intron 45.0%
AGAAAACTCTGTTGGGGTGA+GGG + chr8_1:28288909-28288928 Msa1188180:intron 45.0%
ATCCAACAGGTTCCCCTTTA+TGG + chr8_1:28288952-28288971 Msa1188180:intron 45.0%
ATCCATAAAGGGGAACCTGT+TGG - chr8_1:28288957-28288976 None:intergenic 45.0%
CTAGGTGGTCCAATAAGACT+AGG - chr8_1:28289130-28289149 None:intergenic 45.0%
!! CTAGTCTTATTGGACCACCT+AGG + chr8_1:28289128-28289147 Msa1188180:intron 45.0%
! CATTTGGAACATGACCTAGG+TGG - chr8_1:28289145-28289164 None:intergenic 45.0%
GTTCAATCCTAGGCTTGAGA+AGG + chr8_1:28289164-28289183 Msa1188180:intron 45.0%
GTTGAGAGTTCCACATTGGA+TGG + chr8_1:28289191-28289210 Msa1188180:intron 45.0%
TGGCAAGCACGACATTATTC+TGG + chr8_1:28289319-28289338 Msa1188180:CDS 45.0%
!! GTTGGTGTTGCCGTGTATTG+TGG + chr8_1:28285351-28285370 Msa1188180:CDS 50.0%
CGTCTCACGACCACAATACA+CGG - chr8_1:28285364-28285383 None:intergenic 50.0%
TCAAGACGGCTCCTCTTAGA+CGG - chr8_1:28285414-28285433 None:intergenic 50.0%
CTTCAGTTTGCGCTGCTGTT+TGG + chr8_1:28285496-28285515 Msa1188180:CDS 50.0%
! GCTCTCATTTTGGGCTATGC+AGG + chr8_1:28286609-28286628 Msa1188180:intron 50.0%
!! GGACGCTTGTTATTGGGATG+CGG + chr8_1:28286831-28286850 Msa1188180:CDS 50.0%
!! GACGCTTGTTATTGGGATGC+GGG + chr8_1:28286832-28286851 Msa1188180:CDS 50.0%
GTCGTGCAGAAGACGTTTAC+AGG + chr8_1:28287168-28287187 Msa1188180:CDS 50.0%
TCGAGTAGCTCCGTTGCAAA+AGG + chr8_1:28287473-28287492 Msa1188180:CDS 50.0%
TAGCTCCGTTGCAAAAGGCT+GGG + chr8_1:28287478-28287497 Msa1188180:CDS 50.0%
TCCGATGGCTAGAGTCATGT+CGG - chr8_1:28287532-28287551 None:intergenic 50.0%
ATGACTCTAGCCATCGGAGA+TGG + chr8_1:28287534-28287553 Msa1188180:CDS 50.0%
TCTAGCCATCGGAGATGGTA+TGG + chr8_1:28287539-28287558 Msa1188180:intron 50.0%
CAACCCCAACATCAGCCATT+TGG - chr8_1:28287758-28287777 None:intergenic 50.0%
CAAATGGCTGATGTTGGGGT+TGG + chr8_1:28287756-28287775 Msa1188180:CDS 50.0%
GGTCAATTTGCACTTGGCCA+TGG + chr8_1:28288516-28288535 Msa1188180:CDS 50.0%
TGGCCATGGATGTAATCAGG+TGG + chr8_1:28288530-28288549 Msa1188180:CDS 50.0%
! AGGTCAGAGTGGTAACGATC+AGG + chr8_1:28288837-28288856 Msa1188180:intron 50.0%
GAGAAAACTCTGTTGGGGTG+AGG + chr8_1:28288908-28288927 Msa1188180:intron 50.0%
ACCTGTTGGATGCACAAGGT+GGG - chr8_1:28288943-28288962 None:intergenic 50.0%
AACCTGTTGGATGCACAAGG+TGG - chr8_1:28288944-28288963 None:intergenic 50.0%
GCGTGTTGAGAGTTCCACAT+TGG + chr8_1:28289187-28289206 Msa1188180:intron 50.0%
TTGTCGGCGAGTGATCCTAC+CGG + chr8_1:28285084-28285103 Msa1188180:CDS 55.0%
ACTCAGGAGCTCCGTCTAAG+AGG + chr8_1:28285400-28285419 Msa1188180:CDS 55.0%
! GGAGCTTGTTCGTGTTGGTC+AGG + chr8_1:28285695-28285714 Msa1188180:CDS 55.0%
ACATATGCTGCCGCTGCCTA+TGG + chr8_1:28286292-28286311 Msa1188180:CDS 55.0%
! TAGGGCTGCTTTGCTTCGCA+AGG + chr8_1:28286922-28286941 Msa1188180:CDS 55.0%
CGGTAGCGCCCAATATGCAT+AGG - chr8_1:28286970-28286989 None:intergenic 55.0%
! AACGTAGCTGCGTCTGAGGT+TGG + chr8_1:28287214-28287233 Msa1188180:CDS 55.0%
GTAGCTCCGTTGCAAAAGGC+TGG + chr8_1:28287477-28287496 Msa1188180:CDS 55.0%
GCCGACATGACTCTAGCCAT+CGG + chr8_1:28287528-28287547 Msa1188180:CDS 55.0%
! GATGTTGGGGTTGGCATCAG+TGG + chr8_1:28287765-28287784 Msa1188180:CDS 55.0%
GTTGGCATCAGTGGTCAGGA+GGG + chr8_1:28287774-28287793 Msa1188180:CDS 55.0%
GGAGGGTAGGCAAGCTGTAA+TGG + chr8_1:28287791-28287810 Msa1188180:CDS 55.0%
GCACCATGTAGCCTAGTCGT+TGG - chr8_1:28287887-28287906 None:intergenic 55.0%
ACACATGCAAGCGTGCACAC+AGG - chr8_1:28288060-28288079 None:intergenic 55.0%
! AGTCCTCAGCTTTATGGGGC+TGG + chr8_1:28288331-28288350 Msa1188180:CDS 55.0%
TGTCCAGCCCCATAAAGCTG+AGG - chr8_1:28288337-28288356 None:intergenic 55.0%
TGGGGCTGGACAAAGACAAG+AGG + chr8_1:28288345-28288364 Msa1188180:CDS 55.0%
AAACTCTGTTGGGGTGAGGG+TGG + chr8_1:28288912-28288931 Msa1188180:intron 55.0%
AACTCTGTTGGGGTGAGGGT+GGG + chr8_1:28288913-28288932 Msa1188180:intron 55.0%
ACCCACCTTGTGCATCCAAC+AGG + chr8_1:28288939-28288958 Msa1188180:intron 55.0%
GGGAACCTGTTGGATGCACA+AGG - chr8_1:28288947-28288966 None:intergenic 55.0%
AACACGCCCTTCTCAAGCCT+AGG - chr8_1:28289174-28289193 None:intergenic 55.0%
!! GCTGGGAATTCGGTTCGGAC+CGG + chr8_1:28284718-28284737 Msa1188180:CDS 60.0%
! TGGGGTTGGCATCAGTGGTC+AGG + chr8_1:28287770-28287789 Msa1188180:CDS 60.0%
GGTTGGCATCAGTGGTCAGG+AGG + chr8_1:28287773-28287792 Msa1188180:CDS 60.0%
GCATCAGTGGTCAGGAGGGT+AGG + chr8_1:28287778-28287797 Msa1188180:CDS 60.0%
TCTGTTGGGGTGAGGGTGGG+AGG + chr8_1:28288916-28288935 Msa1188180:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 28284030 28289790 28284030 ID=Msa1188180;Name=Msa1188180
chr8_1 mRNA 28284030 28289790 28284030 ID=Msa1188180-mRNA-1;Parent=Msa1188180;Name=Msa1188180-mRNA-1;_AED=0.04;_eAED=0.04;_QI=427|1|1|1|1|1|7|269|1177
chr8_1 exon 28284030 28285951 28284030 ID=Msa1188180-mRNA-1:exon:9957;Parent=Msa1188180-mRNA-1
chr8_1 exon 28286071 28286377 28286071 ID=Msa1188180-mRNA-1:exon:9958;Parent=Msa1188180-mRNA-1
chr8_1 exon 28286631 28287342 28286631 ID=Msa1188180-mRNA-1:exon:9959;Parent=Msa1188180-mRNA-1
chr8_1 exon 28287432 28287555 28287432 ID=Msa1188180-mRNA-1:exon:9960;Parent=Msa1188180-mRNA-1
chr8_1 exon 28287733 28287952 28287733 ID=Msa1188180-mRNA-1:exon:9961;Parent=Msa1188180-mRNA-1
chr8_1 exon 28288189 28288647 28288189 ID=Msa1188180-mRNA-1:exon:9962;Parent=Msa1188180-mRNA-1
chr8_1 exon 28289305 28289790 28289305 ID=Msa1188180-mRNA-1:exon:9963;Parent=Msa1188180-mRNA-1
chr8_1 five_prime_UTR 28284030 28284456 28284030 ID=Msa1188180-mRNA-1:five_prime_utr;Parent=Msa1188180-mRNA-1
chr8_1 CDS 28284457 28285951 28284457 ID=Msa1188180-mRNA-1:cds;Parent=Msa1188180-mRNA-1
chr8_1 CDS 28286071 28286377 28286071 ID=Msa1188180-mRNA-1:cds;Parent=Msa1188180-mRNA-1
chr8_1 CDS 28286631 28287342 28286631 ID=Msa1188180-mRNA-1:cds;Parent=Msa1188180-mRNA-1
chr8_1 CDS 28287432 28287555 28287432 ID=Msa1188180-mRNA-1:cds;Parent=Msa1188180-mRNA-1
chr8_1 CDS 28287733 28287952 28287733 ID=Msa1188180-mRNA-1:cds;Parent=Msa1188180-mRNA-1
chr8_1 CDS 28288189 28288647 28288189 ID=Msa1188180-mRNA-1:cds;Parent=Msa1188180-mRNA-1
chr8_1 CDS 28289305 28289521 28289305 ID=Msa1188180-mRNA-1:cds;Parent=Msa1188180-mRNA-1
chr8_1 three_prime_UTR 28289522 28289790 28289522 ID=Msa1188180-mRNA-1:three_prime_utr;Parent=Msa1188180-mRNA-1
Gene Sequence

>Msa1188180

ATGATGGATACAAAAAACCCATCTGAGAATTCTTCAAAGTTTGAAACTTTCATGCATAATTCATCATCAAGAAGAAGTTCTGGTAGAAATTCAACTAGGGAAGTCACTTTTGGTCACTCTGAGTCCAAACCTGTGAGATATGGATCAAAGGGTGTTGCTGATTCTGAAGCATTCAGCATGTCTCAGAAAGAAATCAGTGATGAAGATGCTAGGTTGATTTATGTTGATGATCCTGATAGAACAAATGAGAGATTTGAATTTGCTGGGAATTCGGTTCGGACCGGAAAATACTCTTTTATAACTTTTCTTCCTAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTATATTTATTTCCTTATAATTGCTATACTTAATCAGTTACCTCAACTAGCTGTTTTTGGTAGAGGTGTATCAATTTTGCCATTGGCTTTTGTTCTTCTTGTTACTGCTGTGAAAGATGCATATGAGGATTGGAGGAGACATAGATCAGATAAAGTTGAGAACAATAGGTTAGGATTGGTTTTGGTTAATGGTCATTTCATTGAGAAGAAATGGAAAGATATTAGAGTTGGCGAGATCATTAAAATCAATGCAAATGAACCGATTCCGTGTGATTTTGTTTTGTTGTCGGCGAGTGATCCTACCGGTGTTGCTTATGTTCAAACTCTTAATCTAGATGGTGAGTCTAATTTGAAGACTAGGTATGCAAAACAAGAGACTCAATTTAAGTTTCATGAAAAGGAGAGGTTTAGTGGTTTGATTAAGTGCGAGAAGCCGAATAGGAATATATATGGATTTCAAGCTACAATGGAGGTTGATGGAAAGAGATTGTCACTTGGTTCCTCGAATATTGTACTTAGAGGATGTGAACTTAAGAATACTAATTGTGTGGTTGGTGTTGCCGTGTATTGTGGTCGTGAGACGAAAGCTATGCTCAACAACTCAGGAGCTCCGTCTAAGAGGAGCCGTCTTGAGACACAAATGAACTCTGAGATCATCATGCTTTCGTTCTTTCTTGTAGTTTTGTGTTCAGTTACTTCAGTTTGCGCTGCTGTTTGGTTAAAGCGAAACAAGAATGAATTGAATCGATTACCTTATTATAGGAAATTGGATTTTTCAAAGGGAAAAGAGGTAAGTTATCAATATTATGGATGGGGAGTGGAAATCCTTTTCACATTCCTCATGTCGGTTATAGTTTACCAGGTTATGATCCCGATATCCTTGTACATTTCTATGGAGCTTGTTCGTGTTGGTCAGGCCTACTTCATGATCAAAGATTCTAGATTGTATGATGAGGCAACAAATTCAAGGTTTCAGTGTAGGGCCTTGAATATCAATGAAGATTTAGGGCAAATTAAATATGTCTTTTCGGACAAAACTGGCACTCTGACTGAGAACAAGATGGAGTTTCAATGCGCTAGTATTTGGGGTGTCGATTACAGTTCTGCAAAAGCCAGCCTTGAGAATGAGCAAGTTGAATACTCTCTTCAAGTGAATGGAAAGGTCTTGAAGCCAAAGATGAAGGTGAAAGTTAATCAAGAGCTTATGCAATTAGCAAAAAGTGGATTTGCAAGCAAAGATGGAAAACGGATATACGATTTCTTTCTTGCACTGGCAGCATGCAATACTATTGTGCCTCTTGTTGTTGACACATCCGACCCTACAGTCAAGCTGATAGATTATCAAGGGGAATCACCAGATGAACAAGCGTTGACATATGCTGCCGCTGCCTATGGTTTTATGCTTATAGAGCGAACCTCAGGTCACATAATGATTGATATTCATGGAGAACAACAAAGGTTCAATGTCTTGGGGTTGCATGAATTTGATAGTGATCGGAAAAGAATGTCTGTTATATTGGGGTGCAATGACAATTCGGTGAAACTTTTCGTCAAAGGGGCGGATACATCAATGTTCAGTGTGATCAATAAATCATTGAATACAGACATAATACAGGATACTGAAACCCATCTTCACTCTTATTCTTCTGTGGGTTTGAGGACGCTTGTTATTGGGATGCGGGACTTAAATGCTTCAGAATTTGATCAATGGCATTTTGCCTTTGAGGCAGCAAGTACTTCTATGATTGGTAGGGCTGCTTTGCTTCGCAAGGTTGCTGCAAATGTAGAAAATAACCTATGCATATTGGGCGCTACCGCTATTGAAGATAAACTGCAGCAAGGTGTACCGGAAGCTATTGAGTCTCTAAGGAAAGCCGGTATTAAAGTATGGGTGTTGACTGGGGACAAACAAGAAACTGCCATATCAATTGGCTACTCGTCAAAGCTACTAACAAGCGGCATGACTCAATTTAGAATTAAGAGCAATAATCGAGAGTCGTGCAGAAGACGTTTACAGGATGCACTTCTCATGTCTAGAAAAAACGTAGCTGCGTCTGAGGTTGGCAACTATCTTGAAGGAAGTTCTGATGGAGTTGTTTCAACTCCTATGGCGTTGATTATTGATGGTACCAGCCTTGTATATATTCTTGATAGTGAACTTGAAGAAGAGCTCTTTGAACTTGCACGAAGATGTTCCGTTGTTCTTTGTTGTCGAGTAGCTCCGTTGCAAAAGGCTGGGATTGTCTCTCTCGTAAAGAATAGGACGGCCGACATGACTCTAGCCATCGGAGATGGTGCTAACGATGTATCAATGATCCAAATGGCTGATGTTGGGGTTGGCATCAGTGGTCAGGAGGGTAGGCAAGCTGTAATGGCTTCAGATTTTGCAATGGGGCAGTTTCGGTTTTTAGTTCCTCTCTTATTTGTACACGGACACTGGAATTACCAACGACTAGGCTACATGGTGCTATACAATTTTTACAGAAATGCTGTCTTTGTGCTAATTCTGTTTTGGTATGTTCTCTTCACTGCTTTCACTTTGACAACAGCTATAAATGAATGGAGCAGCATGTTGTATTCAATAATCTACACTGCAGTGCCAACTATTGTTGTTGCCATTTTTGACAAGGATCTTAGTAAAAGGACTCTTCTACAGAGTCCTCAGCTTTATGGGGCTGGACAAAGACAAGAGGCCTACAACAAAAAATTGTTTTGGTTGACAATAGCTGATACGTTATGGCAAAGCATTGTTGTCTTTTTTGTTCCTCTCTTTGCATATTGGGGAAGCACTGTAGATATAGCAAGTATTGGGGATCTTTGGACTATTTCGATAGTTATTTTGGTCAATTTGCACTTGGCCATGGATGTAATCAGGTGGACTTGGATTTCTCATGCATCCATTTGGGGGTCTATCATTGCAACTTTCATATGTGTCATGGTTGTTGATGCTATACCGTCACTTCATGGTTACTGGGCTATTTTTGATGTGGCAAGCACGACATTATTCTGGTTATGTTTGCTAGGAATACTGATAGCAGCATTGCTTCCACGTTTTGTTGTAAAGTTTATTTATCAATATTATTGTCCCGACGATATTCAGATTTCAAGAGAAATCGAGAAGTTTGAGAATAGAAGGGTCAATGGAGATAGACAGATAGAAATGCTTCACATCTCAAATCCACAAAGATAA
Protein sequence

>Msa1188180

MMDTKNPSENSSKFETFMHNSSSRRSSGRNSTREVTFGHSESKPVRYGSKGVADSEAFSMSQKEISDEDARLIYVDDPDRTNERFEFAGNSVRTGKYSFITFLPRNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRGVSILPLAFVLLVTAVKDAYEDWRRHRSDKVENNRLGLVLVNGHFIEKKWKDIRVGEIIKINANEPIPCDFVLLSASDPTGVAYVQTLNLDGESNLKTRYAKQETQFKFHEKERFSGLIKCEKPNRNIYGFQATMEVDGKRLSLGSSNIVLRGCELKNTNCVVGVAVYCGRETKAMLNNSGAPSKRSRLETQMNSEIIMLSFFLVVLCSVTSVCAAVWLKRNKNELNRLPYYRKLDFSKGKEVSYQYYGWGVEILFTFLMSVIVYQVMIPISLYISMELVRVGQAYFMIKDSRLYDEATNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSSAKASLENEQVEYSLQVNGKVLKPKMKVKVNQELMQLAKSGFASKDGKRIYDFFLALAACNTIVPLVVDTSDPTVKLIDYQGESPDEQALTYAAAAYGFMLIERTSGHIMIDIHGEQQRFNVLGLHEFDSDRKRMSVILGCNDNSVKLFVKGADTSMFSVINKSLNTDIIQDTETHLHSYSSVGLRTLVIGMRDLNASEFDQWHFAFEAASTSMIGRAALLRKVAANVENNLCILGATAIEDKLQQGVPEAIESLRKAGIKVWVLTGDKQETAISIGYSSKLLTSGMTQFRIKSNNRESCRRRLQDALLMSRKNVAASEVGNYLEGSSDGVVSTPMALIIDGTSLVYILDSELEEELFELARRCSVVLCCRVAPLQKAGIVSLVKNRTADMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLFVHGHWNYQRLGYMVLYNFYRNAVFVLILFWYVLFTAFTLTTAINEWSSMLYSIIYTAVPTIVVAIFDKDLSKRTLLQSPQLYGAGQRQEAYNKKLFWLTIADTLWQSIVVFFVPLFAYWGSTVDIASIGDLWTISIVILVNLHLAMDVIRWTWISHASIWGSIIATFICVMVVDAIPSLHGYWAIFDVASTTLFWLCLLGILIAALLPRFVVKFIYQYYCPDDIQISREIEKFENRRVNGDRQIEMLHISNPQR*