AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1283740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1283740 MtrunA17_Chr8g0355251 98.469 1176 18 0 2 1177 1 1176 0.0 2407
Msa1283740 MtrunA17_Chr3g0078371 77.998 1159 231 7 22 1176 73 1211 0.0 1843
Msa1283740 MtrunA17_Chr7g0244991 58.223 1137 430 10 65 1160 137 1269 0.0 1311
Msa1283740 MtrunA17_Chr5g0415271 37.060 1136 636 20 71 1158 24 1128 0.0 712
Msa1283740 MtrunA17_Chr8g0363911 37.728 1153 634 24 71 1174 44 1161 0.0 708
Msa1283740 MtrunA17_Chr6g0450601 37.522 1146 642 23 70 1157 37 1166 0.0 691
Msa1283740 MtrunA17_Chr8g0368691 36.618 1106 636 20 87 1144 67 1155 0.0 682
Msa1283740 MtrunA17_Chr2g0329991 36.442 1158 641 28 70 1157 40 1172 0.0 681
Msa1283740 MtrunA17_Chr4g0062251 37.326 1077 611 21 70 1101 38 1095 0.0 681
Msa1283740 MtrunA17_Chr3g0091611 36.852 1118 630 24 79 1144 41 1134 0.0 662
Msa1283740 MtrunA17_Chr8g0342811 34.824 1163 655 25 70 1158 40 1173 0.0 661
Msa1283740 MtrunA17_Chr0c05g0492131 35.943 1124 650 25 70 1144 33 1135 0.0 637
Msa1283740 MtrunA17_Chr2g0324791 32.653 1127 667 22 71 1176 3 1058 2.50e-180 559
Msa1283740 MtrunA17_Chr8g0382071 22.391 527 254 17 389 900 392 778 3.62e-16 84.3
Msa1283740 MtrunA17_Chr1g0173111 23.500 400 197 14 387 768 389 697 7.51e-15 79.7
Msa1283740 MtrunA17_Chr8g0346461 25.143 350 207 10 442 767 352 670 1.30e-11 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1283740 AT5G04930.1 69.663 1157 331 7 22 1177 20 1157 0.0 1703
Msa1283740 AT1G59820.1 35.780 1199 668 21 23 1176 11 1152 0.0 714
Msa1283740 AT3G27870.1 38.502 1148 621 27 70 1158 37 1158 0.0 714
Msa1283740 AT3G13900.1 36.915 1154 640 22 71 1156 41 1174 0.0 698
Msa1283740 AT3G25610.1 37.288 1121 639 23 70 1144 39 1141 0.0 691
Msa1283740 AT1G68710.2 35.975 1123 654 20 70 1144 41 1146 0.0 687
Msa1283740 AT1G68710.1 35.975 1123 654 20 70 1144 41 1146 0.0 687
Msa1283740 AT1G17500.2 36.649 1146 651 27 70 1161 40 1164 0.0 687
Msa1283740 AT1G17500.1 36.649 1146 651 27 70 1161 40 1164 0.0 687
Msa1283740 AT1G54280.2 36.810 1160 635 26 71 1156 41 1176 0.0 686
Msa1283740 AT1G54280.3 36.810 1160 635 26 71 1156 41 1176 0.0 686
Msa1283740 AT1G54280.1 36.810 1160 635 26 71 1156 41 1176 0.0 686
Msa1283740 AT1G72700.1 36.606 1161 646 30 70 1165 40 1175 0.0 684
Msa1283740 AT1G72700.3 36.606 1161 646 30 70 1165 40 1175 0.0 684
Msa1283740 AT1G72700.2 36.606 1161 646 30 70 1165 40 1175 0.0 684
Msa1283740 AT1G26130.1 36.740 1135 625 24 70 1144 41 1142 0.0 684
Msa1283740 AT1G26130.2 36.708 1136 625 25 70 1144 41 1143 0.0 681
Msa1283740 AT1G26130.4 36.708 1136 625 25 70 1144 41 1143 0.0 681
Msa1283740 AT1G26130.3 36.708 1136 625 25 70 1144 41 1143 0.0 681
Msa1283740 AT1G68710.3 35.248 1149 653 21 70 1144 41 1172 0.0 675
Msa1283740 AT3G27870.2 40.577 971 516 20 70 1000 37 986 0.0 663
Msa1283740 AT1G13210.1 35.765 1124 655 23 70 1144 37 1142 0.0 661
Msa1283740 AT3G13900.2 38.627 932 499 17 71 945 41 956 0.0 597
Msa1283740 AT3G27870.3 38.004 992 533 24 224 1158 1 967 0.0 594
Msa1283740 AT5G44240.2 33.729 1094 647 20 71 1155 3 1027 0.0 570
Msa1283740 AT5G44240.1 33.638 1094 648 19 71 1155 35 1059 0.0 570
Msa1283740 AT3G13900.3 36.905 924 503 18 71 941 41 937 1.60e-176 546

Find 255 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATATCAATGAAGATTT+AGG 0.134302 8_3:+25356639 Msa1283740:CDS
GACTATTTCGATAGTTATTT+TGG 0.183975 8_3:+25359350 Msa1283740:CDS
CTACAGAGTCCTCAGCTTTA+TGG 0.189123 8_3:+25359180 Msa1283740:CDS
AGTTTCAATGCGCTAGTATT+TGG 0.205298 8_3:+25356718 Msa1283740:CDS
TGTTCCTCTCTTTGCATATT+GGG 0.205345 8_3:+25359290 Msa1283740:CDS
CTTCTTGTATTTATAAAATT+AGG 0.206900 8_3:+25360546 Msa1283740:three_prime_UTR
ATTACCTTATTATAGGAAAT+TGG 0.214718 8_3:+25356401 Msa1283740:CDS
TGAATCGATTACCTTATTAT+AGG 0.220322 8_3:+25356394 Msa1283740:CDS
GATTTCTCATGCATCCATTT+GGG 0.234204 8_3:+25359413 Msa1283740:CDS
GAAAAGAATGTCTGTTATAT+TGG 0.236706 8_3:+25357523 Msa1283740:CDS
CAGATAAAGTTGAGAATAAT+AGG 0.237012 8_3:+25355800 Msa1283740:CDS
GTTTCAATGCGCTAGTATTT+GGG 0.239935 8_3:+25356719 Msa1283740:CDS
GATATCCTTGTACATTTCTA+TGG 0.241630 8_3:+25356527 Msa1283740:CDS
AATCTCTCATTTGTTCTATC+AGG 0.248475 8_3:-25355541 None:intergenic
GAGGAAAGTTATCAATATTA+TGG 0.260563 8_3:+25356441 Msa1283740:CDS
TTGTTCCTCTCTTTGCATAT+TGG 0.261562 8_3:+25359289 Msa1283740:CDS
TTGACAAGGATCTTAGTAAA+AGG 0.262036 8_3:+25359151 Msa1283740:CDS
AGAAAATAACCTATGCATAT+TGG 0.269137 8_3:+25357811 Msa1283740:CDS
TAGTACTAAAACATTTATTA+AGG 0.277021 8_3:-25355240 None:intergenic
GGAAAGCCGGTATTAAAGTA+TGG 0.277372 8_3:+25357894 Msa1283740:CDS
CTATGCAGGTTCAATGTCTT+GGG 0.277909 8_3:+25357476 Msa1283740:intron
TTAACTTTCACCTTCATCTT+TGG 0.278701 8_3:-25356944 None:intergenic
AATGAGAGATTTGAATTTGC+TGG 0.284143 8_3:+25355553 Msa1283740:CDS
TTTAGTACTAGAACAAATTA+TGG 0.286657 8_3:+25355253 Msa1283740:five_prime_UTR
AGAGAGAAAGCTTGTGAAAT+TGG 0.287115 8_3:-25354909 None:intergenic
TCTTTGTGCTAATTCTGTTT+TGG 0.290282 8_3:+25358784 Msa1283740:CDS
AAATCCAATTTCCTATAATA+AGG 0.292418 8_3:-25356405 None:intergenic
TAGCAAGTATTGGGGATCTT+TGG 0.295898 8_3:+25359328 Msa1283740:CDS
TACAGAGTCCTCAGCTTTAT+GGG 0.300068 8_3:+25359181 Msa1283740:CDS
AAAAGAATGTCTGTTATATT+GGG 0.301829 8_3:+25357524 Msa1283740:CDS
GGATTTCTCATGCATCCATT+TGG 0.302390 8_3:+25359412 Msa1283740:CDS
TCAACAAGGGAAGTCACTTT+TGG 0.317357 8_3:+25355400 Msa1283740:CDS
GTCATTTCATTGAGAAGAAA+TGG 0.322837 8_3:+25355845 Msa1283740:CDS
TGAATATCAATGAAGATTTA+GGG 0.327800 8_3:+25356640 Msa1283740:CDS
GATTAAGAATAGCAATTATA+AGG 0.334849 8_3:-25355666 None:intergenic
GAAAATAACCTATGCATATT+GGG 0.338089 8_3:+25357812 Msa1283740:CDS
TCGAGAAGTTTGAGAATAGA+AGG 0.341274 8_3:+25360300 Msa1283740:CDS
GGTTTGAGGACGCTTGTTAT+TGG 0.342303 8_3:+25357677 Msa1283740:CDS
GTTCAAACTCTTAATCTAGA+TGG 0.343224 8_3:+25355970 Msa1283740:CDS
AAACCGAATAGGAATATATA+TGG 0.343990 8_3:+25356084 Msa1283740:CDS
CTTCAGTTTGCGCTGCTGTT+TGG 0.350525 8_3:+25356349 Msa1283740:CDS
TGGCAAGCACGACATTATTC+TGG 0.350578 8_3:+25360174 Msa1283740:CDS
TAATAGGTTAGGATTGGTTT+TGG 0.353886 8_3:+25355816 Msa1283740:CDS
CATGAAAAGGAGAGGTTTAG+TGG 0.354836 8_3:+25356045 Msa1283740:CDS
ATAGAAATGTACAAGGATAT+CGG 0.355230 8_3:-25356525 None:intergenic
CTGTAGATATAGCAAGTATT+GGG 0.355510 8_3:+25359319 Msa1283740:CDS
CCTATGGCGTTGATTATTGA+TGG 0.358296 8_3:+25358130 Msa1283740:CDS
TACCGTCACTTCATGGTTAC+TGG 0.358328 8_3:+25359481 Msa1283740:CDS
TCCTCGAATATTGTACTTAG+AGG 0.362052 8_3:+25356153 Msa1283740:CDS
GTTTGAGGACGCTTGTTATT+GGG 0.362402 8_3:+25357678 Msa1283740:CDS
AATCCATATATATTCCTATT+CGG 0.362404 8_3:-25356087 None:intergenic
CAACACTAGTGTTATCTTTG+TGG 0.362784 8_3:-25360365 None:intergenic
GTCGTGCAGAAGACGTTTAC+AGG 0.366456 8_3:+25358021 Msa1283740:CDS
GCTATGCAGGTTCAATGTCT+TGG 0.366620 8_3:+25357475 Msa1283740:intron
AAAGGGTAGCTTTGGAGAAA+TGG 0.374344 8_3:-25354980 None:intergenic
GTGAAAGGTGGTAGAAGAAA+AGG 0.376860 8_3:-25354998 None:intergenic
ATTTGAATTTGCTGGGAATT+CGG 0.381074 8_3:+25355561 Msa1283740:CDS
TGACGAGTAGCCAATTGATA+TGG 0.383546 8_3:-25357945 None:intergenic
TATGTCAACGCTTGTTCATC+TGG 0.387878 8_3:-25357127 None:intergenic
GAGTCCAAACCTGTGAGATA+TGG 0.388556 8_3:+25355430 Msa1283740:CDS
GATGCTATACCGTCACTTCA+TGG 0.388855 8_3:+25359474 Msa1283740:CDS
CTTATTCTTCTGTGGGTTTG+AGG 0.389069 8_3:+25357663 Msa1283740:CDS
TAAATCTTCATTGATATTCA+AGG 0.394762 8_3:-25356637 None:intergenic
CAAACCCAGAAGTTCAAATC+TGG 0.395330 8_3:-25355040 None:intergenic
TCAATTTAAGTTTCATGAAA+AGG 0.397346 8_3:+25356032 Msa1283740:CDS
TGGGGTTGGCATCAGTGGTC+AGG 0.401702 8_3:+25358623 Msa1283740:CDS
CTTCACTCTTATTCTTCTGT+GGG 0.407311 8_3:+25357656 Msa1283740:CDS
CAAGAAACTGCCATATCAAT+TGG 0.409612 8_3:+25357935 Msa1283740:CDS
TGATCCATATCTCACAGGTT+TGG 0.410264 8_3:-25355434 None:intergenic
AACTTGCTCATTCTCAAGGC+TGG 0.412722 8_3:-25356766 None:intergenic
CGGAAGCTATTGAGTCTCTA+AGG 0.413263 8_3:+25357873 Msa1283740:CDS
TCATCATCAAGAAGAAGTTC+TGG 0.413308 8_3:+25355370 Msa1283740:CDS
CTTAGAGACTCAATAGCTTC+CGG 0.418470 8_3:-25357872 None:intergenic
CAGAAGAATAAGAGTGAAGA+TGG 0.418864 8_3:-25357652 None:intergenic
CACATAATGATTGATATTCA+TGG 0.419762 8_3:+25357196 Msa1283740:CDS
GGAGCTTGTTCGTGTTGGTC+AGG 0.421237 8_3:+25356548 Msa1283740:CDS
GTAGAAGAAAAGGGTAGCTT+TGG 0.427448 8_3:-25354988 None:intergenic
CATGTCGGTTATAGTTTACC+AGG 0.432869 8_3:+25356494 Msa1283740:CDS
CAAGTACTTCTATGATTGGT+AGG 0.433645 8_3:+25357756 Msa1283740:CDS
CAAGCTACAATGGAGGTTGA+TGG 0.433886 8_3:+25356111 Msa1283740:CDS
CAAGTTGAATACTCTCTTCA+AGG 0.436098 8_3:+25356783 Msa1283740:CDS
TTTGAGAATAGAAGGGTCAA+TGG 0.436649 8_3:+25360308 Msa1283740:CDS
AGTGGATTTGCAAGCAAAGA+TGG 0.436723 8_3:+25356992 Msa1283740:CDS
CGTCAGAATATTATTGATGT+TGG 0.436878 8_3:+25360444 Msa1283740:three_prime_UTR
ACATATGCTGCCGCTGCCTA+TGG 0.439035 8_3:+25357145 Msa1283740:CDS
CAACCCCAACATCAGCCATT+TGG 0.441854 8_3:-25358608 None:intergenic
AAAGTTGAGAATAATAGGTT+AGG 0.448938 8_3:+25355805 Msa1283740:CDS
ATTGGGGTGCAATGACAATT+CGG 0.449050 8_3:+25357541 Msa1283740:CDS
TCTTCACTCTTATTCTTCTG+TGG 0.450704 8_3:+25357655 Msa1283740:CDS
ATGCTTCAGAATTTGATCAA+TGG 0.454118 8_3:+25357714 Msa1283740:CDS
ATTAAAGTATGGGTGTTGAC+TGG 0.454694 8_3:+25357905 Msa1283740:CDS
TTATTCTGGTTATGTTTGCT+AGG 0.459471 8_3:+25360188 Msa1283740:CDS
TGGATGTAATCAGGTGGACT+TGG 0.459902 8_3:+25359391 Msa1283740:CDS
CGATGTATCAATGATCCAAA+TGG 0.463472 8_3:+25358593 Msa1283740:CDS
ACTGTAGATATAGCAAGTAT+TGG 0.463941 8_3:+25359318 Msa1283740:CDS
AAATTCAAGGTTTCAGTGTA+GGG 0.465525 8_3:+25356614 Msa1283740:CDS
CCTGTGAGATATGGATCAAA+GGG 0.466156 8_3:+25355439 Msa1283740:CDS
GGAGGGTAGGCAAGCTGTAA+TGG 0.466999 8_3:+25358644 Msa1283740:CDS
TGAGAATAATAGGTTAGGAT+TGG 0.467227 8_3:+25355810 Msa1283740:CDS
TGACAATAGCTGATACGTTA+TGG 0.468397 8_3:+25359247 Msa1283740:CDS
ATGAGAGATTTGAATTTGCT+GGG 0.468936 8_3:+25355554 Msa1283740:CDS
GTAGCTCCGTTGCAAAAGGC+TGG 0.475516 8_3:+25358330 Msa1283740:CDS
TGATCCAAATGGCTGATGTT+GGG 0.475834 8_3:+25358604 Msa1283740:CDS
GATAGAAAACAATGAAATCA+TGG 0.476780 8_3:-25360470 None:intergenic
GCAGCAAGTACTTCTATGAT+TGG 0.480124 8_3:+25357752 Msa1283740:CDS
TGAAAGGTGGTAGAAGAAAA+GGG 0.483991 8_3:-25354997 None:intergenic
TGGAGTTGTTTCAACTCCTA+TGG 0.484075 8_3:+25358114 Msa1283740:CDS
TTGTCTCTCTCGTAAAGAAT+AGG 0.484493 8_3:+25358355 Msa1283740:CDS
GAGGTTGGCAACTATCTTGA+AGG 0.484584 8_3:+25358082 Msa1283740:CDS
GATGTTGGGGTTGGCATCAG+TGG 0.487356 8_3:+25358618 Msa1283740:CDS
AGTCCTCAGCTTTATGGGGC+TGG 0.487402 8_3:+25359186 Msa1283740:CDS
AATTTGCTGGGAATTCGGTT+CGG 0.487604 8_3:+25355566 Msa1283740:CDS
GCTGGGAATTCGGTTCGGAC+CGG 0.489295 8_3:+25355571 Msa1283740:CDS
GGTCAATTTGCACTTGGCCA+TGG 0.490285 8_3:+25359371 Msa1283740:CDS
GACGCTTGTTATTGGGATGC+GGG 0.490460 8_3:+25357685 Msa1283740:CDS
ATACGATTTCTTTCTTGCAC+TGG 0.491560 8_3:+25357024 Msa1283740:CDS
TCCTCTAAGTACAATATTCG+AGG 0.493160 8_3:-25356154 None:intergenic
ATGATGAGGCAACAAATTCA+AGG 0.494420 8_3:+25356601 Msa1283740:CDS
AAAGTTATCAATATTATGGA+TGG 0.497507 8_3:+25356445 Msa1283740:CDS
TAGAAATGTACAAGGATATC+GGG 0.498250 8_3:-25356524 None:intergenic
ATAAAGAAGAAGAAGCAAGT+TGG 0.499266 8_3:-25354934 None:intergenic
AAAATGGCAACAACAATAGT+TGG 0.499937 8_3:-25359129 None:intergenic
GTTCCTCTCTTTGCATATTG+GGG 0.500684 8_3:+25359291 Msa1283740:CDS
AATCTATCAGCTTGACTGTA+GGG 0.500945 8_3:-25357090 None:intergenic
GGACGCTTGTTATTGGGATG+CGG 0.502399 8_3:+25357684 Msa1283740:CDS
GGTTGGCATCAGTGGTCAGG+AGG 0.503044 8_3:+25358626 Msa1283740:CDS
CCCTTTGATCCATATCTCAC+AGG 0.503525 8_3:-25355439 None:intergenic
TCTTATTTGTACACGGACAC+TGG 0.506057 8_3:+25358709 Msa1283740:CDS
AGAATCTTTGATCATGAAGT+AGG 0.508208 8_3:-25356571 None:intergenic
CAACACCCATACTTTAATAC+CGG 0.510191 8_3:-25357900 None:intergenic
TCGAGTAGCTCCGTTGCAAA+AGG 0.511123 8_3:+25358326 Msa1283740:CDS
ACTTGGCCATGGATGTAATC+AGG 0.511345 8_3:+25359382 Msa1283740:CDS
TTAAAGTATGGGTGTTGACT+GGG 0.511818 8_3:+25357906 Msa1283740:CDS
GGTCTTGAAGCCAAAGATGA+AGG 0.512614 8_3:+25356934 Msa1283740:CDS
CAAATTCAAGGTTTCAGTGT+AGG 0.513211 8_3:+25356613 Msa1283740:CDS
CCGACATGAGGAATGTGAAA+AGG 0.513314 8_3:-25356479 None:intergenic
AACGTAGCTGCGTCTGAGGT+TGG 0.513352 8_3:+25358067 Msa1283740:CDS
ATTTCTCATGCATCCATTTG+GGG 0.515709 8_3:+25359414 Msa1283740:CDS
CTTGAAATCTGAATATCGTC+GGG 0.518724 8_3:-25360272 None:intergenic
TATCTTGAAGGAAGTTCTGA+TGG 0.520260 8_3:+25358094 Msa1283740:CDS
ATGCTTATAGAGCGAACCTC+AGG 0.520554 8_3:+25357172 Msa1283740:CDS
TGATAGTGAACTTGAAGAAG+AGG 0.521242 8_3:+25358174 Msa1283740:CDS
TGCTGTGAAAGATGCATATG+AGG 0.524329 8_3:+25355759 Msa1283740:CDS
AAAACAAAATCACAAGGAAT+CGG 0.524501 8_3:-25355913 None:intergenic
TGACAACAGCTATAAATGAA+TGG 0.524690 8_3:+25359070 Msa1283740:CDS
TTGCAAGCAAAGATGGAAAA+CGG 0.526412 8_3:+25356999 Msa1283740:CDS
TGCATGAATTTGATAGTGAT+CGG 0.526715 8_3:+25357501 Msa1283740:CDS
AAGTCAAACTCAAACTATGA+TGG 0.530999 8_3:+25355294 Msa1283740:exon
TCTTGAAATCTGAATATCGT+CGG 0.531604 8_3:-25360273 None:intergenic
AAGATGCATATGAGGATTGG+AGG 0.533248 8_3:+25355767 Msa1283740:CDS
AAATGGAAAGATATTAGAGT+TGG 0.535651 8_3:+25355862 Msa1283740:CDS
TGAAAGATGCATATGAGGAT+TGG 0.536868 8_3:+25355764 Msa1283740:CDS
TTAAGTGCGAGAAACCGAAT+AGG 0.537373 8_3:+25356073 Msa1283740:CDS
TCTATGGAGCTTGTTCGTGT+TGG 0.538618 8_3:+25356543 Msa1283740:CDS
TAAACTGCAGCAAGGTGTAC+CGG 0.538892 8_3:+25357853 Msa1283740:CDS
ACCTGTGAGATATGGATCAA+AGG 0.539126 8_3:+25355438 Msa1283740:CDS
GTCAAGCTGATAGATTATCA+AGG 0.540142 8_3:+25357097 Msa1283740:CDS
ATTGAATACAGACATAATAC+AGG 0.540454 8_3:+25357619 Msa1283740:CDS
ATCTTTGAAGAATTCCCAGA+TGG 0.540629 8_3:-25355328 None:intergenic
CACTATCAAGAATATATACA+AGG 0.541563 8_3:-25358159 None:intergenic
AACTGTTCAAACAAATTCCT+AGG 0.542452 8_3:-25355619 None:intergenic
AGAAGTACTTGCTGCCTCAA+AGG 0.546382 8_3:-25357744 None:intergenic
GTTGGCATCAGTGGTCAGGA+GGG 0.546555 8_3:+25358627 Msa1283740:CDS
TAGGGCTGCTTTGCTTCGCA+AGG 0.549839 8_3:+25357775 Msa1283740:CDS
ATCAAGAATATATACAAGGC+TGG 0.550049 8_3:-25358155 None:intergenic
GTGAGTCTAATTTGAAGACT+AGG 0.551484 8_3:+25355992 Msa1283740:CDS
AAGTTATCAATATTATGGAT+GGG 0.551657 8_3:+25356446 Msa1283740:CDS
GAAAGCCGGTATTAAAGTAT+GGG 0.552040 8_3:+25357895 Msa1283740:CDS
ACAGAGTCCTCAGCTTTATG+GGG 0.554892 8_3:+25359182 Msa1283740:CDS
ATTCAACTTGCTCATTCTCA+AGG 0.555225 8_3:-25356770 None:intergenic
GCATCAGTGGTCAGGAGGGT+AGG 0.555914 8_3:+25358631 Msa1283740:CDS
CACTCTGACTGAGAACAAGA+TGG 0.558857 8_3:+25356695 Msa1283740:CDS
ATGATCCAAATGGCTGATGT+TGG 0.559216 8_3:+25358603 Msa1283740:CDS
CTTGTATTTATAAAATTAGG+TGG 0.559367 8_3:+25360549 Msa1283740:three_prime_UTR
TGCAACTTTCATATGTGTCA+TGG 0.559490 8_3:+25359446 Msa1283740:CDS
TCAATATTATGGATGGGGAG+TGG 0.560880 8_3:+25356452 Msa1283740:CDS
TAGAAACCAAAGACAAAGAG+TGG 0.565375 8_3:-25355092 None:intergenic
GACAGCAGAGGAGAGGTCAA+TGG 0.565719 8_3:-25354887 None:intergenic
TAATCTATCAGCTTGACTGT+AGG 0.565808 8_3:-25357091 None:intergenic
AAGAATACTAATTGTGTGGT+TGG 0.566670 8_3:+25356186 Msa1283740:CDS
TCAAGCTGATAGATTATCAA+GGG 0.569002 8_3:+25357098 Msa1283740:CDS
ATGACTCTAGCCATCGGAGA+TGG 0.569025 8_3:+25358387 Msa1283740:CDS
TTACCAACGACTAGGCTACA+TGG 0.572195 8_3:+25358734 Msa1283740:CDS
TATGCAGGTTCAATGTCTTG+GGG 0.575323 8_3:+25357477 Msa1283740:intron
GTTGGTGTTGCCGTGTATTG+TGG 0.575445 8_3:+25356204 Msa1283740:CDS
TTAAGTTTCATGAAAAGGAG+AGG 0.577127 8_3:+25356037 Msa1283740:CDS
AGTCCACCTGATTACATCCA+TGG 0.578614 8_3:-25359388 None:intergenic
ATTGAGTCTCTAAGGAAAGC+CGG 0.578620 8_3:+25357881 Msa1283740:CDS
AAATCAGTGATGAAGATGCT+AGG 0.579456 8_3:+25355500 Msa1283740:CDS
AGTTATCAATATTATGGATG+GGG 0.580201 8_3:+25356447 Msa1283740:CDS
CTCTATAAGCATAAAACCAT+AGG 0.580922 8_3:-25357161 None:intergenic
TAGCTCCGTTGCAAAAGGCT+GGG 0.582525 8_3:+25358331 Msa1283740:CDS
TCAAGACGGCTCCTCTTAGA+CGG 0.582988 8_3:-25356264 None:intergenic
TCTTTGAAGAATTCCCAGAT+GGG 0.584144 8_3:-25355327 None:intergenic
CAAATGGCTGATGTTGGGGT+TGG 0.584450 8_3:+25358609 Msa1283740:CDS
GTTCCTCTCTTATTTGTACA+CGG 0.589784 8_3:+25358702 Msa1283740:CDS
ATATGGATTTCAAGCTACAA+TGG 0.591040 8_3:+25356101 Msa1283740:CDS
AGTTCATTTGTGTCTCAAGA+CGG 0.592225 8_3:-25356278 None:intergenic
TATCAGCTTGACTGTAGGGT+CGG 0.595910 8_3:-25357086 None:intergenic
TTTCAATGCGCTAGTATTTG+GGG 0.596349 8_3:+25356720 Msa1283740:CDS
TTTCTCATGCATCCATTTGG+GGG 0.597711 8_3:+25359415 Msa1283740:CDS
CGGTAGCGCCCAATATGCAT+AGG 0.597956 8_3:-25357820 None:intergenic
CACTGGAATTACCAACGACT+AGG 0.598882 8_3:+25358726 Msa1283740:CDS
AAAGCTATGCTCAACAACTC+AGG 0.598989 8_3:+25356237 Msa1283740:CDS
AAGTACTTCTATGATTGGTA+GGG 0.600513 8_3:+25357757 Msa1283740:CDS
GATCCAAATGGCTGATGTTG+GGG 0.600913 8_3:+25358605 Msa1283740:CDS
CGTCTCACGACCACAATACA+CGG 0.601943 8_3:-25356214 None:intergenic
AAAGAATGTCTGTTATATTG+GGG 0.603285 8_3:+25357525 Msa1283740:CDS
AGGATATCGGGATCATAACC+TGG 0.604549 8_3:-25356512 None:intergenic
AAGCATAAAACCATAGGCAG+CGG 0.609256 8_3:-25357155 None:intergenic
CCATCAATAATCAACGCCAT+AGG 0.614847 8_3:-25358130 None:intergenic
CGAGAAGTTTGAGAATAGAA+GGG 0.615333 8_3:+25360301 Msa1283740:CDS
GCACCATGTAGCCTAGTCGT+TGG 0.617009 8_3:-25358737 None:intergenic
TCGGATGTGTCAACAACAAG+AGG 0.617316 8_3:-25357067 None:intergenic
ACAAGAAGAACAAAAGCCAA+TGG 0.621288 8_3:-25355733 None:intergenic
AAGCTCCATAGAAATGTACA+AGG 0.624504 8_3:-25356532 None:intergenic
TTTGGTCTCAGTGAATGGAA+AGG 0.626806 8_3:+25356913 Msa1283740:intron
AGAAGAATAAGAGTGAAGAT+GGG 0.633351 8_3:-25357651 None:intergenic
TCGTCAAAGCTACTAACAAG+CGG 0.635770 8_3:+25357962 Msa1283740:CDS
TCCGATGGCTAGAGTCATGT+CGG 0.637075 8_3:-25358382 None:intergenic
ATGCATATGAGGATTGGAGG+AGG 0.637600 8_3:+25355770 Msa1283740:CDS
GATGGAAAGAGATTGTCACT+TGG 0.637955 8_3:+25356129 Msa1283740:CDS
CTTCCCCAATATGCAAAGAG+AGG 0.638044 8_3:-25359294 None:intergenic
ATCAATCATTATGTGACCTG+AGG 0.639691 8_3:-25357188 None:intergenic
CTGCAGTTTATCTTCAATAG+CGG 0.645080 8_3:-25357840 None:intergenic
AGATACCATACCATCTCCGA+TGG 0.645447 8_3:-25358397 None:intergenic
AGATTCTAGATTGTATGATG+AGG 0.647520 8_3:+25356587 Msa1283740:CDS
TGTTACAGATGTGAAGTGAA+AGG 0.648450 8_3:-25355013 None:intergenic
TACCAGTAACCATGAAGTGA+CGG 0.649664 8_3:-25359483 None:intergenic
TGAACATAAGCAACACCGGT+AGG 0.652658 8_3:-25355952 None:intergenic
TGTAGATATAGCAAGTATTG+GGG 0.656699 8_3:+25359320 Msa1283740:CDS
TGGATTTCAAGCTACAATGG+AGG 0.657601 8_3:+25356104 Msa1283740:CDS
CTCTCTCGTAAAGAATAGGA+CGG 0.658957 8_3:+25358359 Msa1283740:CDS
GCCGACATGACTCTAGCCAT+CGG 0.659172 8_3:+25358381 Msa1283740:CDS
GAAATTGGACAGCAGAGGAG+AGG 0.660113 8_3:-25354894 None:intergenic
TGGCCATGGATGTAATCAGG+TGG 0.664998 8_3:+25359385 Msa1283740:CDS
TTGTCGACGAGTGATCCTAC+CGG 0.666383 8_3:+25355937 Msa1283740:CDS
TGTCCAGCCCCATAAAGCTG+AGG 0.666629 8_3:-25359189 None:intergenic
TTCTGGTAGAAATTCAACAA+GGG 0.668455 8_3:+25355387 Msa1283740:CDS
TAAAGTATGGGTGTTGACTG+GGG 0.668570 8_3:+25357907 Msa1283740:CDS
TACTCGACAACAAAGAACAA+CGG 0.673269 8_3:-25358310 None:intergenic
ACTTAAGAATACTAATTGTG+TGG 0.675064 8_3:+25356182 Msa1283740:CDS
GTTCTGGTAGAAATTCAACA+AGG 0.677278 8_3:+25355386 Msa1283740:CDS
TGTCCGTGTACAAATAAGAG+AGG 0.679867 8_3:-25358705 None:intergenic
AGTTTGAACATAAGCAACAC+CGG 0.682795 8_3:-25355956 None:intergenic
TGGGGCTGGACAAAGACAAG+AGG 0.684412 8_3:+25359200 Msa1283740:CDS
ATTGAAGATAAACTGCAGCA+AGG 0.685229 8_3:+25357845 Msa1283740:CDS
GACAACAAAACAAAATCACA+AGG 0.688219 8_3:-25355919 None:intergenic
CAAGCTGATAGATTATCAAG+GGG 0.688461 8_3:+25357099 Msa1283740:CDS
GGTAAACTATAACCGACATG+AGG 0.690892 8_3:-25356491 None:intergenic
ATATTCATGGAGAACAACAA+AGG 0.691556 8_3:+25357209 Msa1283740:CDS
ATAAACTTTACAACAAAACG+TGG 0.694069 8_3:-25360233 None:intergenic
TACAGATGTGAAGTGAAAGG+TGG 0.694727 8_3:-25355010 None:intergenic
CTTGTGAAATTGGACAGCAG+AGG 0.710207 8_3:-25354899 None:intergenic
GTGTGTGAAACAAACAACGT+TGG 0.752417 8_3:+25355128 Msa1283740:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTATTATGTTTTAAAA+TGG + chr8_3:25359647-25359666 Msa1283740:intron 10.0%
!! GGAAAAAAAAAAAAAAAAAC+TGG - chr8_3:25355074-25355093 None:intergenic 15.0%
!!! ATTAAGGTTGTTTTAAATAT+GGG - chr8_3:25355227-25355246 None:intergenic 15.0%
!!! TATTAAGGTTGTTTTAAATA+TGG - chr8_3:25355228-25355247 None:intergenic 15.0%
!! TAGTACTAAAACATTTATTA+AGG - chr8_3:25355243-25355262 None:intergenic 15.0%
!!! TTTATTTTTGTGTTGTTATT+TGG + chr8_3:25356895-25356914 Msa1283740:intron 15.0%
!!! TGTAAAGTTATTCATTTTTT+AGG + chr8_3:25360418-25360437 Msa1283740:three_prime_UTR 15.0%
!! CTTCTTGTATTTATAAAATT+AGG + chr8_3:25360546-25360565 Msa1283740:three_prime_UTR 15.0%
!!! TTTTATGTCTTTTTGATGAT+TGG + chr8_3:25355166-25355185 Msa1283740:five_prime_UTR 20.0%
!! TTTAGTACTAGAACAAATTA+TGG + chr8_3:25355253-25355272 Msa1283740:five_prime_UTR 20.0%
!!! AGTTATAAAAGAGTATTTTC+CGG - chr8_3:25355593-25355612 None:intergenic 20.0%
!! GATTAAGAATAGCAATTATA+AGG - chr8_3:25355669-25355688 None:intergenic 20.0%
!!! TCAATTTAAGTTTCATGAAA+AGG + chr8_3:25356032-25356051 Msa1283740:CDS 20.0%
!! AATCCATATATATTCCTATT+CGG - chr8_3:25356090-25356109 None:intergenic 20.0%
!! ATTACCTTATTATAGGAAAT+TGG + chr8_3:25356401-25356420 Msa1283740:CDS 20.0%
!! AAATCCAATTTCCTATAATA+AGG - chr8_3:25356408-25356427 None:intergenic 20.0%
!! AAAGTTATCAATATTATGGA+TGG + chr8_3:25356445-25356464 Msa1283740:CDS 20.0%
!! AAGTTATCAATATTATGGAT+GGG + chr8_3:25356446-25356465 Msa1283740:CDS 20.0%
!! TAAATCTTCATTGATATTCA+AGG - chr8_3:25356640-25356659 None:intergenic 20.0%
!! TTGAATATCAATGAAGATTT+AGG + chr8_3:25356639-25356658 Msa1283740:CDS 20.0%
!! TGAATATCAATGAAGATTTA+GGG + chr8_3:25356640-25356659 Msa1283740:CDS 20.0%
!!! GCAAATTAAATATGTCTTTT+CGG + chr8_3:25356662-25356681 Msa1283740:CDS 20.0%
!! AAAAGAATGTCTGTTATATT+GGG + chr8_3:25357524-25357543 Msa1283740:CDS 20.0%
!! GAAAATGGAAAAGAAATAAA+AGG + chr8_3:25358483-25358502 Msa1283740:intron 20.0%
!! AAAAAGAAATGATACAACAA+AGG - chr8_3:25360399-25360418 None:intergenic 20.0%
!!! AGTTTTTGTTTCATACAAAA+AGG + chr8_3:25360507-25360526 Msa1283740:three_prime_UTR 20.0%
!! CTTGTATTTATAAAATTAGG+TGG + chr8_3:25360549-25360568 Msa1283740:three_prime_UTR 20.0%
!! CTTTTATAACTTTTCTTCCT+AGG + chr8_3:25355602-25355621 Msa1283740:CDS 25.0%
! CAGATAAAGTTGAGAATAAT+AGG + chr8_3:25355800-25355819 Msa1283740:CDS 25.0%
! AAAGTTGAGAATAATAGGTT+AGG + chr8_3:25355805-25355824 Msa1283740:CDS 25.0%
! AAATGGAAAGATATTAGAGT+TGG + chr8_3:25355862-25355881 Msa1283740:CDS 25.0%
! AAAACAAAATCACAAGGAAT+CGG - chr8_3:25355916-25355935 None:intergenic 25.0%
! AAACCGAATAGGAATATATA+TGG + chr8_3:25356084-25356103 Msa1283740:CDS 25.0%
! ACTTAAGAATACTAATTGTG+TGG + chr8_3:25356182-25356201 Msa1283740:CDS 25.0%
! TGAATCGATTACCTTATTAT+AGG + chr8_3:25356394-25356413 Msa1283740:CDS 25.0%
!!! TAGGAAATTGGATTTTTCAA+AGG + chr8_3:25356413-25356432 Msa1283740:CDS 25.0%
!!! AGGAAATTGGATTTTTCAAA+GGG + chr8_3:25356414-25356433 Msa1283740:CDS 25.0%
! GAGGAAAGTTATCAATATTA+TGG + chr8_3:25356441-25356460 Msa1283740:CDS 25.0%
! AGTTATCAATATTATGGATG+GGG + chr8_3:25356447-25356466 Msa1283740:CDS 25.0%
! ATAGAAATGTACAAGGATAT+CGG - chr8_3:25356528-25356547 None:intergenic 25.0%
! CACATAATGATTGATATTCA+TGG + chr8_3:25357196-25357215 Msa1283740:CDS 25.0%
! AACATAAAAATGTCTGTTTG+GGG - chr8_3:25357278-25357297 None:intergenic 25.0%
! CAACATAAAAATGTCTGTTT+GGG - chr8_3:25357279-25357298 None:intergenic 25.0%
! TCAACATAAAAATGTCTGTT+TGG - chr8_3:25357280-25357299 None:intergenic 25.0%
!!! TTAGAATGATTTGCTGTTAA+TGG + chr8_3:25357311-25357330 Msa1283740:intron 25.0%
! CATAAAAAAAGGACTACTTT+GGG - chr8_3:25357439-25357458 None:intergenic 25.0%
! TCATAAAAAAAGGACTACTT+TGG - chr8_3:25357440-25357459 None:intergenic 25.0%
!!! ATGAGAGCATTCATAAAAAA+AGG - chr8_3:25357450-25357469 None:intergenic 25.0%
!! TTTTATGAATGCTCTCATTT+TGG + chr8_3:25357452-25357471 Msa1283740:intron 25.0%
!! TTTATGAATGCTCTCATTTT+GGG + chr8_3:25357453-25357472 Msa1283740:intron 25.0%
! GAAAAGAATGTCTGTTATAT+TGG + chr8_3:25357523-25357542 Msa1283740:CDS 25.0%
! AAAGAATGTCTGTTATATTG+GGG + chr8_3:25357525-25357544 Msa1283740:CDS 25.0%
! ATTGAATACAGACATAATAC+AGG + chr8_3:25357619-25357638 Msa1283740:CDS 25.0%
! AGAAAATAACCTATGCATAT+TGG + chr8_3:25357811-25357830 Msa1283740:CDS 25.0%
! GAAAATAACCTATGCATATT+GGG + chr8_3:25357812-25357831 Msa1283740:CDS 25.0%
! CACTATCAAGAATATATACA+AGG - chr8_3:25358162-25358181 None:intergenic 25.0%
! TTTCGTTCTCATTATTTGAA+GGG - chr8_3:25358451-25358470 None:intergenic 25.0%
! ATTTCGTTCTCATTATTTGA+AGG - chr8_3:25358452-25358471 None:intergenic 25.0%
! AATAATGAGAACGAAATACA+AGG + chr8_3:25358455-25358474 Msa1283740:intron 25.0%
! AAATACAAGGATAGAGAAAA+TGG + chr8_3:25358468-25358487 Msa1283740:intron 25.0%
! AGGCACATAAAGAAATAAAT+TGG - chr8_3:25358893-25358912 None:intergenic 25.0%
!!! CCAAAACAATTTTTTGTTGT+AGG - chr8_3:25359226-25359245 None:intergenic 25.0%
!! CCTACAACAAAAAATTGTTT+TGG + chr8_3:25359223-25359242 Msa1283740:CDS 25.0%
!! GACTATTTCGATAGTTATTT+TGG + chr8_3:25359350-25359369 Msa1283740:CDS 25.0%
!! TTGATTTTGCAATCCATAAA+GGG - chr8_3:25359823-25359842 None:intergenic 25.0%
!!! ATTGATTTTGCAATCCATAA+AGG - chr8_3:25359824-25359843 None:intergenic 25.0%
! ATAAACTTTACAACAAAACG+TGG - chr8_3:25360236-25360255 None:intergenic 25.0%
! GATAGAAAACAATGAAATCA+TGG - chr8_3:25360473-25360492 None:intergenic 25.0%
!! TTTCATTGTTTTCTATCCAA+AGG + chr8_3:25360476-25360495 Msa1283740:three_prime_UTR 25.0%
!! TTCATTGTTTTCTATCCAAA+GGG + chr8_3:25360477-25360496 Msa1283740:three_prime_UTR 25.0%
ATAAAGAAGAAGAAGCAAGT+TGG - chr8_3:25354937-25354956 None:intergenic 30.0%
! ATTTTCCAGATTTGAACTTC+TGG + chr8_3:25355035-25355054 Msa1283740:five_prime_UTR 30.0%
! TTTTCCAGATTTGAACTTCT+GGG + chr8_3:25355036-25355055 Msa1283740:five_prime_UTR 30.0%
!!! TTTTTTCCACTCTTTGTCTT+TGG + chr8_3:25355086-25355105 Msa1283740:five_prime_UTR 30.0%
AAGTCAAACTCAAACTATGA+TGG + chr8_3:25355294-25355313 Msa1283740:exon 30.0%
TTCTGGTAGAAATTCAACAA+GGG + chr8_3:25355387-25355406 Msa1283740:CDS 30.0%
AATCTCTCATTTGTTCTATC+AGG - chr8_3:25355544-25355563 None:intergenic 30.0%
AATGAGAGATTTGAATTTGC+TGG + chr8_3:25355553-25355572 Msa1283740:CDS 30.0%
! ATGAGAGATTTGAATTTGCT+GGG + chr8_3:25355554-25355573 Msa1283740:CDS 30.0%
!! ATTTGAATTTGCTGGGAATT+CGG + chr8_3:25355561-25355580 Msa1283740:CDS 30.0%
AACTGTTCAAACAAATTCCT+AGG - chr8_3:25355622-25355641 None:intergenic 30.0%
TGAGAATAATAGGTTAGGAT+TGG + chr8_3:25355810-25355829 Msa1283740:CDS 30.0%
!!! TAATAGGTTAGGATTGGTTT+TGG + chr8_3:25355816-25355835 Msa1283740:CDS 30.0%
!!! TTAGGATTGGTTTTGGTTAA+TGG + chr8_3:25355823-25355842 Msa1283740:CDS 30.0%
GTCATTTCATTGAGAAGAAA+TGG + chr8_3:25355845-25355864 Msa1283740:CDS 30.0%
GACAACAAAACAAAATCACA+AGG - chr8_3:25355922-25355941 None:intergenic 30.0%
GTTCAAACTCTTAATCTAGA+TGG + chr8_3:25355970-25355989 Msa1283740:CDS 30.0%
TTAAGTTTCATGAAAAGGAG+AGG + chr8_3:25356037-25356056 Msa1283740:CDS 30.0%
ATATGGATTTCAAGCTACAA+TGG + chr8_3:25356101-25356120 Msa1283740:CDS 30.0%
AAGAATACTAATTGTGTGGT+TGG + chr8_3:25356186-25356205 Msa1283740:CDS 30.0%
TAGAAATGTACAAGGATATC+GGG - chr8_3:25356527-25356546 None:intergenic 30.0%
GATATCCTTGTACATTTCTA+TGG + chr8_3:25356527-25356546 Msa1283740:CDS 30.0%
AGAATCTTTGATCATGAAGT+AGG - chr8_3:25356574-25356593 None:intergenic 30.0%
AGATTCTAGATTGTATGATG+AGG + chr8_3:25356587-25356606 Msa1283740:CDS 30.0%
AAATTCAAGGTTTCAGTGTA+GGG + chr8_3:25356614-25356633 Msa1283740:CDS 30.0%
TTAACTTTCACCTTCATCTT+TGG - chr8_3:25356947-25356966 None:intergenic 30.0%
CTTATGCAATTAGCAAAAAG+TGG + chr8_3:25356974-25356993 Msa1283740:CDS 30.0%
TCAAGCTGATAGATTATCAA+GGG + chr8_3:25357098-25357117 Msa1283740:CDS 30.0%
CTCTATAAGCATAAAACCAT+AGG - chr8_3:25357164-25357183 None:intergenic 30.0%
ATATTCATGGAGAACAACAA+AGG + chr8_3:25357209-25357228 Msa1283740:CDS 30.0%
!! TGCATGAATTTGATAGTGAT+CGG + chr8_3:25357501-25357520 Msa1283740:CDS 30.0%
AGAAGAATAAGAGTGAAGAT+GGG - chr8_3:25357654-25357673 None:intergenic 30.0%
ATGCTTCAGAATTTGATCAA+TGG + chr8_3:25357714-25357733 Msa1283740:CDS 30.0%
AAGTACTTCTATGATTGGTA+GGG + chr8_3:25357757-25357776 Msa1283740:CDS 30.0%
ATCAAGAATATATACAAGGC+TGG - chr8_3:25358158-25358177 None:intergenic 30.0%
! GGAAAAGAAATAAAAGGCAT+CGG + chr8_3:25358489-25358508 Msa1283740:intron 30.0%
CTTTCTCCTTCATATGTTAT+AGG + chr8_3:25358564-25358583 Msa1283740:intron 30.0%
TTAGCACCTATAACATATGA+AGG - chr8_3:25358573-25358592 None:intergenic 30.0%
! TCTTTGTGCTAATTCTGTTT+TGG + chr8_3:25358784-25358803 Msa1283740:CDS 30.0%
TGACAACAGCTATAAATGAA+TGG + chr8_3:25359070-25359089 Msa1283740:CDS 30.0%
AAAATGGCAACAACAATAGT+TGG - chr8_3:25359132-25359151 None:intergenic 30.0%
ACTAAGATCCTTGTCAAAAA+TGG - chr8_3:25359148-25359167 None:intergenic 30.0%
TTGACAAGGATCTTAGTAAA+AGG + chr8_3:25359151-25359170 Msa1283740:CDS 30.0%
ACTGTAGATATAGCAAGTAT+TGG + chr8_3:25359318-25359337 Msa1283740:CDS 30.0%
CTGTAGATATAGCAAGTATT+GGG + chr8_3:25359319-25359338 Msa1283740:CDS 30.0%
! TGTAGATATAGCAAGTATTG+GGG + chr8_3:25359320-25359339 Msa1283740:CDS 30.0%
!!! TATTTTGGTCAATTTGCACT+TGG + chr8_3:25359365-25359384 Msa1283740:CDS 30.0%
! TGATTTTGCAATCCATAAAG+GGG - chr8_3:25359822-25359841 None:intergenic 30.0%
TCTTACAAGTCAACTTTGTA+GGG + chr8_3:25359914-25359933 Msa1283740:intron 30.0%
!! TGTTTCTATCCTAGTCTTAT+TGG + chr8_3:25359973-25359992 Msa1283740:intron 30.0%
! TTATTCTGGTTATGTTTGCT+AGG + chr8_3:25360188-25360207 Msa1283740:CDS 30.0%
TCTTGAAATCTGAATATCGT+CGG - chr8_3:25360276-25360295 None:intergenic 30.0%
CGTCAGAATATTATTGATGT+TGG + chr8_3:25360444-25360463 Msa1283740:three_prime_UTR 30.0%
AGAGAGAAAGCTTGTGAAAT+TGG - chr8_3:25354912-25354931 None:intergenic 35.0%
TGAAAGGTGGTAGAAGAAAA+GGG - chr8_3:25355000-25355019 None:intergenic 35.0%
TGTTACAGATGTGAAGTGAA+AGG - chr8_3:25355016-25355035 None:intergenic 35.0%
TAGAAACCAAAGACAAAGAG+TGG - chr8_3:25355095-25355114 None:intergenic 35.0%
ATGGATACAAAAAACCCATC+TGG + chr8_3:25355313-25355332 Msa1283740:CDS 35.0%
TGGATACAAAAAACCCATCT+GGG + chr8_3:25355314-25355333 Msa1283740:CDS 35.0%
! TCTTTGAAGAATTCCCAGAT+GGG - chr8_3:25355330-25355349 None:intergenic 35.0%
! ATCTTTGAAGAATTCCCAGA+TGG - chr8_3:25355331-25355350 None:intergenic 35.0%
TCATCATCAAGAAGAAGTTC+TGG + chr8_3:25355370-25355389 Msa1283740:CDS 35.0%
GTTCTGGTAGAAATTCAACA+AGG + chr8_3:25355386-25355405 Msa1283740:CDS 35.0%
AAATCAGTGATGAAGATGCT+AGG + chr8_3:25355500-25355519 Msa1283740:CDS 35.0%
!! TTACCTCAACTAGCTGTTTT+TGG + chr8_3:25355691-25355710 Msa1283740:CDS 35.0%
! AGGTGTATCAATTTTGCCAT+TGG + chr8_3:25355717-25355736 Msa1283740:CDS 35.0%
ACAAGAAGAACAAAAGCCAA+TGG - chr8_3:25355736-25355755 None:intergenic 35.0%
TGAAAGATGCATATGAGGAT+TGG + chr8_3:25355764-25355783 Msa1283740:CDS 35.0%
AGTTTGAACATAAGCAACAC+CGG - chr8_3:25355959-25355978 None:intergenic 35.0%
GTGAGTCTAATTTGAAGACT+AGG + chr8_3:25355992-25356011 Msa1283740:CDS 35.0%
TCCTCGAATATTGTACTTAG+AGG + chr8_3:25356153-25356172 Msa1283740:CDS 35.0%
TCCTCTAAGTACAATATTCG+AGG - chr8_3:25356157-25356176 None:intergenic 35.0%
AGTTCATTTGTGTCTCAAGA+CGG - chr8_3:25356281-25356300 None:intergenic 35.0%
!! GGATTTTTCAAAGGGAAAAG+AGG + chr8_3:25356422-25356441 Msa1283740:CDS 35.0%
AAGCTCCATAGAAATGTACA+AGG - chr8_3:25356535-25356554 None:intergenic 35.0%
ATGATGAGGCAACAAATTCA+AGG + chr8_3:25356601-25356620 Msa1283740:CDS 35.0%
CAAATTCAAGGTTTCAGTGT+AGG + chr8_3:25356613-25356632 Msa1283740:CDS 35.0%
! TATGTCTTTTCGGACAAAAC+TGG + chr8_3:25356672-25356691 Msa1283740:CDS 35.0%
AGTTTCAATGCGCTAGTATT+TGG + chr8_3:25356718-25356737 Msa1283740:CDS 35.0%
GTTTCAATGCGCTAGTATTT+GGG + chr8_3:25356719-25356738 Msa1283740:CDS 35.0%
TTTCAATGCGCTAGTATTTG+GGG + chr8_3:25356720-25356739 Msa1283740:CDS 35.0%
! ATTCAACTTGCTCATTCTCA+AGG - chr8_3:25356773-25356792 None:intergenic 35.0%
! CAAGTTGAATACTCTCTTCA+AGG + chr8_3:25356783-25356802 Msa1283740:CDS 35.0%
! TGTTATTTGGTCTCAGTGAA+TGG + chr8_3:25356908-25356927 Msa1283740:intron 35.0%
TTGCAAGCAAAGATGGAAAA+CGG + chr8_3:25356999-25357018 Msa1283740:CDS 35.0%
ATACGATTTCTTTCTTGCAC+TGG + chr8_3:25357024-25357043 Msa1283740:CDS 35.0%
AATCTATCAGCTTGACTGTA+GGG - chr8_3:25357093-25357112 None:intergenic 35.0%
TAATCTATCAGCTTGACTGT+AGG - chr8_3:25357094-25357113 None:intergenic 35.0%
GTCAAGCTGATAGATTATCA+AGG + chr8_3:25357097-25357116 Msa1283740:CDS 35.0%
CAAGCTGATAGATTATCAAG+GGG + chr8_3:25357099-25357118 Msa1283740:CDS 35.0%
ATCAATCATTATGTGACCTG+AGG - chr8_3:25357191-25357210 None:intergenic 35.0%
TAAAGCAGTTGAAGGAGTTA+AGG - chr8_3:25357401-25357420 None:intergenic 35.0%
!! TACTTTGGGACCTAATTCAA+GGG - chr8_3:25357425-25357444 None:intergenic 35.0%
CAGAAGAATAAGAGTGAAGA+TGG - chr8_3:25357655-25357674 None:intergenic 35.0%
TCTTCACTCTTATTCTTCTG+TGG + chr8_3:25357655-25357674 Msa1283740:CDS 35.0%
CTTCACTCTTATTCTTCTGT+GGG + chr8_3:25357656-25357675 Msa1283740:CDS 35.0%
CAAGTACTTCTATGATTGGT+AGG + chr8_3:25357756-25357775 Msa1283740:CDS 35.0%
CTGCAGTTTATCTTCAATAG+CGG - chr8_3:25357843-25357862 None:intergenic 35.0%
ATTGAAGATAAACTGCAGCA+AGG + chr8_3:25357845-25357864 Msa1283740:CDS 35.0%
GAAAGCCGGTATTAAAGTAT+GGG + chr8_3:25357895-25357914 Msa1283740:CDS 35.0%
CAACACCCATACTTTAATAC+CGG - chr8_3:25357903-25357922 None:intergenic 35.0%
!! ATTAAAGTATGGGTGTTGAC+TGG + chr8_3:25357905-25357924 Msa1283740:CDS 35.0%
!! TTAAAGTATGGGTGTTGACT+GGG + chr8_3:25357906-25357925 Msa1283740:CDS 35.0%
CAAGAAACTGCCATATCAAT+TGG + chr8_3:25357935-25357954 Msa1283740:CDS 35.0%
! TATCTTGAAGGAAGTTCTGA+TGG + chr8_3:25358094-25358113 Msa1283740:CDS 35.0%
! TGATAGTGAACTTGAAGAAG+AGG + chr8_3:25358174-25358193 Msa1283740:CDS 35.0%
TACTCGACAACAAAGAACAA+CGG - chr8_3:25358313-25358332 None:intergenic 35.0%
TTGTCTCTCTCGTAAAGAAT+AGG + chr8_3:25358355-25358374 Msa1283740:CDS 35.0%
CGATGTATCAATGATCCAAA+TGG + chr8_3:25358593-25358612 Msa1283740:CDS 35.0%
! AATGGCTTCAGATTTTGCAA+TGG + chr8_3:25358662-25358681 Msa1283740:CDS 35.0%
! ATGGCTTCAGATTTTGCAAT+GGG + chr8_3:25358663-25358682 Msa1283740:CDS 35.0%
! GTTCCTCTCTTATTTGTACA+CGG + chr8_3:25358702-25358721 Msa1283740:CDS 35.0%
TTAAAAGCCACAAAGAGCAA+TGG - chr8_3:25358966-25358985 None:intergenic 35.0%
!!! TTTGTGGCTTTTAAGATGCA+TGG + chr8_3:25358972-25358991 Msa1283740:intron 35.0%
!!! TGTTGTTGCCATTTTTGACA+AGG + chr8_3:25359137-25359156 Msa1283740:CDS 35.0%
TGACAATAGCTGATACGTTA+TGG + chr8_3:25359247-25359266 Msa1283740:CDS 35.0%
TTGTTCCTCTCTTTGCATAT+TGG + chr8_3:25359289-25359308 Msa1283740:CDS 35.0%
TGTTCCTCTCTTTGCATATT+GGG + chr8_3:25359290-25359309 Msa1283740:CDS 35.0%
GATTTCTCATGCATCCATTT+GGG + chr8_3:25359413-25359432 Msa1283740:CDS 35.0%
ATTTCTCATGCATCCATTTG+GGG + chr8_3:25359414-25359433 Msa1283740:CDS 35.0%
TGCAACTTTCATATGTGTCA+TGG + chr8_3:25359446-25359465 Msa1283740:CDS 35.0%
CATGACATGACATGACTAAT+TGG - chr8_3:25359582-25359601 None:intergenic 35.0%
CCAACGTAGACTTATTTAAG+AGG - chr8_3:25359847-25359866 None:intergenic 35.0%
CCTCTTAAATAAGTCTACGT+TGG + chr8_3:25359844-25359863 Msa1283740:intron 35.0%
AATAAGTCTACGTTGGATAG+TGG + chr8_3:25359851-25359870 Msa1283740:intron 35.0%
!! CAAAGTTGACTTGTAAGACA+AGG - chr8_3:25359912-25359931 None:intergenic 35.0%
GTCTTACAAGTCAACTTTGT+AGG + chr8_3:25359913-25359932 Msa1283740:intron 35.0%
TGTTCCAAATGTTCAATCCT+AGG + chr8_3:25360009-25360028 Msa1283740:intron 35.0%
ACTATTTAAGCCATCCAATG+TGG - chr8_3:25360059-25360078 None:intergenic 35.0%
ACATGTGTACAAAACTTTGC+AGG + chr8_3:25360138-25360157 Msa1283740:intron 35.0%
CATGTGTACAAAACTTTGCA+GGG + chr8_3:25360139-25360158 Msa1283740:intron 35.0%
CTTGAAATCTGAATATCGTC+GGG - chr8_3:25360275-25360294 None:intergenic 35.0%
TCGAGAAGTTTGAGAATAGA+AGG + chr8_3:25360300-25360319 Msa1283740:CDS 35.0%
CGAGAAGTTTGAGAATAGAA+GGG + chr8_3:25360301-25360320 Msa1283740:CDS 35.0%
TTTGAGAATAGAAGGGTCAA+TGG + chr8_3:25360308-25360327 Msa1283740:CDS 35.0%
CAACACTAGTGTTATCTTTG+TGG - chr8_3:25360368-25360387 None:intergenic 35.0%
CAAAAACTCTATCTACCCTT+TGG - chr8_3:25360495-25360514 None:intergenic 35.0%
!! AAAGGGTAGCTTTGGAGAAA+TGG - chr8_3:25354983-25355002 None:intergenic 40.0%
GTAGAAGAAAAGGGTAGCTT+TGG - chr8_3:25354991-25355010 None:intergenic 40.0%
GTGAAAGGTGGTAGAAGAAA+AGG - chr8_3:25355001-25355020 None:intergenic 40.0%
TACAGATGTGAAGTGAAAGG+TGG - chr8_3:25355013-25355032 None:intergenic 40.0%
CAAACCCAGAAGTTCAAATC+TGG - chr8_3:25355043-25355062 None:intergenic 40.0%
GTGTGTGAAACAAACAACGT+TGG + chr8_3:25355128-25355147 Msa1283740:five_prime_UTR 40.0%
!! TCAACAAGGGAAGTCACTTT+TGG + chr8_3:25355400-25355419 Msa1283740:CDS 40.0%
TGATCCATATCTCACAGGTT+TGG - chr8_3:25355437-25355456 None:intergenic 40.0%
ACCTGTGAGATATGGATCAA+AGG + chr8_3:25355438-25355457 Msa1283740:CDS 40.0%
CCTGTGAGATATGGATCAAA+GGG + chr8_3:25355439-25355458 Msa1283740:CDS 40.0%
!! AATTTGCTGGGAATTCGGTT+CGG + chr8_3:25355566-25355585 Msa1283740:CDS 40.0%
CTACCAAAAACAGCTAGTTG+AGG - chr8_3:25355697-25355716 None:intergenic 40.0%
!!! CAACTAGCTGTTTTTGGTAG+AGG + chr8_3:25355697-25355716 Msa1283740:CDS 40.0%
TGCTGTGAAAGATGCATATG+AGG + chr8_3:25355759-25355778 Msa1283740:CDS 40.0%
AAGATGCATATGAGGATTGG+AGG + chr8_3:25355767-25355786 Msa1283740:CDS 40.0%
CATGAAAAGGAGAGGTTTAG+TGG + chr8_3:25356045-25356064 Msa1283740:CDS 40.0%
TTAAGTGCGAGAAACCGAAT+AGG + chr8_3:25356073-25356092 Msa1283740:CDS 40.0%
TGGATTTCAAGCTACAATGG+AGG + chr8_3:25356104-25356123 Msa1283740:CDS 40.0%
GATGGAAAGAGATTGTCACT+TGG + chr8_3:25356129-25356148 Msa1283740:CDS 40.0%
AAAGCTATGCTCAACAACTC+AGG + chr8_3:25356237-25356256 Msa1283740:CDS 40.0%
TCAATATTATGGATGGGGAG+TGG + chr8_3:25356452-25356471 Msa1283740:CDS 40.0%
! CCTTTTCACATTCCTCATGT+CGG + chr8_3:25356479-25356498 Msa1283740:CDS 40.0%
GGTAAACTATAACCGACATG+AGG - chr8_3:25356494-25356513 None:intergenic 40.0%
! CATGTCGGTTATAGTTTACC+AGG + chr8_3:25356494-25356513 Msa1283740:CDS 40.0%
TTTGGTCTCAGTGAATGGAA+AGG + chr8_3:25356913-25356932 Msa1283740:intron 40.0%
! AGTGGATTTGCAAGCAAAGA+TGG + chr8_3:25356992-25357011 Msa1283740:CDS 40.0%
TATGTCAACGCTTGTTCATC+TGG - chr8_3:25357130-25357149 None:intergenic 40.0%
AAGCATAAAACCATAGGCAG+CGG - chr8_3:25357158-25357177 None:intergenic 40.0%
ACTGCTTTAGCCCTTGAATT+AGG + chr8_3:25357412-25357431 Msa1283740:intron 40.0%
!! CTACTTTGGGACCTAATTCA+AGG - chr8_3:25357426-25357445 None:intergenic 40.0%
CTATGCAGGTTCAATGTCTT+GGG + chr8_3:25357476-25357495 Msa1283740:intron 40.0%
TATGCAGGTTCAATGTCTTG+GGG + chr8_3:25357477-25357496 Msa1283740:intron 40.0%
ATTGGGGTGCAATGACAATT+CGG + chr8_3:25357541-25357560 Msa1283740:CDS 40.0%
! TCGGTGAAACTTTTCGTCAA+AGG + chr8_3:25357560-25357579 Msa1283740:CDS 40.0%
! CGGTGAAACTTTTCGTCAAA+GGG + chr8_3:25357561-25357580 Msa1283740:CDS 40.0%
! GGTGAAACTTTTCGTCAAAG+GGG + chr8_3:25357562-25357581 Msa1283740:CDS 40.0%
CTTATTCTTCTGTGGGTTTG+AGG + chr8_3:25357663-25357682 Msa1283740:CDS 40.0%
!! GTTTGAGGACGCTTGTTATT+GGG + chr8_3:25357678-25357697 Msa1283740:CDS 40.0%
! TCAATGGCATTTTGCCTTTG+AGG + chr8_3:25357730-25357749 Msa1283740:CDS 40.0%
GCAGCAAGTACTTCTATGAT+TGG + chr8_3:25357752-25357771 Msa1283740:CDS 40.0%
CTTAGAGACTCAATAGCTTC+CGG - chr8_3:25357875-25357894 None:intergenic 40.0%
! ATTGAGTCTCTAAGGAAAGC+CGG + chr8_3:25357881-25357900 Msa1283740:CDS 40.0%
GGAAAGCCGGTATTAAAGTA+TGG + chr8_3:25357894-25357913 Msa1283740:CDS 40.0%
!! TAAAGTATGGGTGTTGACTG+GGG + chr8_3:25357907-25357926 Msa1283740:CDS 40.0%
TGACGAGTAGCCAATTGATA+TGG - chr8_3:25357948-25357967 None:intergenic 40.0%
TCGTCAAAGCTACTAACAAG+CGG + chr8_3:25357962-25357981 Msa1283740:CDS 40.0%
! TGGAGTTGTTTCAACTCCTA+TGG + chr8_3:25358114-25358133 Msa1283740:CDS 40.0%
CCATCAATAATCAACGCCAT+AGG - chr8_3:25358133-25358152 None:intergenic 40.0%
!! CCTATGGCGTTGATTATTGA+TGG + chr8_3:25358130-25358149 Msa1283740:CDS 40.0%
! ATGTGCTGATAGATCTCAGA+TGG + chr8_3:25358198-25358217 Msa1283740:intron 40.0%
CTCTCTCGTAAAGAATAGGA+CGG + chr8_3:25358359-25358378 Msa1283740:CDS 40.0%
ATGATCCAAATGGCTGATGT+TGG + chr8_3:25358603-25358622 Msa1283740:CDS 40.0%
TGATCCAAATGGCTGATGTT+GGG + chr8_3:25358604-25358623 Msa1283740:CDS 40.0%
! TGGCTTCAGATTTTGCAATG+GGG + chr8_3:25358664-25358683 Msa1283740:CDS 40.0%
! ATTTTGCAATGGGGCAGTTT+CGG + chr8_3:25358673-25358692 Msa1283740:CDS 40.0%
TGTCCGTGTACAAATAAGAG+AGG - chr8_3:25358708-25358727 None:intergenic 40.0%
! TCTTATTTGTACACGGACAC+TGG + chr8_3:25358709-25358728 Msa1283740:CDS 40.0%
ACTATGACCATTGCTCTTTG+TGG + chr8_3:25358956-25358975 Msa1283740:intron 40.0%
! TACAGAGTCCTCAGCTTTAT+GGG + chr8_3:25359181-25359200 Msa1283740:CDS 40.0%
GTTCCTCTCTTTGCATATTG+GGG + chr8_3:25359291-25359310 Msa1283740:CDS 40.0%
!! TAGCAAGTATTGGGGATCTT+TGG + chr8_3:25359328-25359347 Msa1283740:CDS 40.0%
GGATTTCTCATGCATCCATT+TGG + chr8_3:25359412-25359431 Msa1283740:CDS 40.0%
TTTCTCATGCATCCATTTGG+GGG + chr8_3:25359415-25359434 Msa1283740:CDS 40.0%
TACCAGTAACCATGAAGTGA+CGG - chr8_3:25359486-25359505 None:intergenic 40.0%
ATCCAACGCTGTAAAACACA+AGG + chr8_3:25359528-25359547 Msa1283740:intron 40.0%
TTCAATTCCTAACTCGTGTG+TGG + chr8_3:25359741-25359760 Msa1283740:intron 40.0%
TGTGTGGAGAAAACTCTGTT+GGG + chr8_3:25359757-25359776 Msa1283740:intron 40.0%
! GAACATTTGGAACATGACCT+AGG - chr8_3:25360003-25360022 None:intergenic 40.0%
CAAGCCTAGGATTGAACATT+TGG - chr8_3:25360016-25360035 None:intergenic 40.0%
TTCAATCCTAGGCTTGAGAA+GGG + chr8_3:25360020-25360039 Msa1283740:intron 40.0%
!!! TTGCAGGGCTATTTTTGATG+TGG + chr8_3:25360154-25360173 Msa1283740:intron 40.0%
CTTGTGAAATTGGACAGCAG+AGG - chr8_3:25354902-25354921 None:intergenic 45.0%
GAGTCCAAACCTGTGAGATA+TGG + chr8_3:25355430-25355449 Msa1283740:CDS 45.0%
CCCTTTGATCCATATCTCAC+AGG - chr8_3:25355442-25355461 None:intergenic 45.0%
ATGCATATGAGGATTGGAGG+AGG + chr8_3:25355770-25355789 Msa1283740:CDS 45.0%
TGAACATAAGCAACACCGGT+AGG - chr8_3:25355955-25355974 None:intergenic 45.0%
CAAGCTACAATGGAGGTTGA+TGG + chr8_3:25356111-25356130 Msa1283740:CDS 45.0%
CCGACATGAGGAATGTGAAA+AGG - chr8_3:25356482-25356501 None:intergenic 45.0%
AGGATATCGGGATCATAACC+TGG - chr8_3:25356515-25356534 None:intergenic 45.0%
! TCTATGGAGCTTGTTCGTGT+TGG + chr8_3:25356543-25356562 Msa1283740:CDS 45.0%
CACTCTGACTGAGAACAAGA+TGG + chr8_3:25356695-25356714 Msa1283740:CDS 45.0%
! AACTTGCTCATTCTCAAGGC+TGG - chr8_3:25356769-25356788 None:intergenic 45.0%
GGTCTTGAAGCCAAAGATGA+AGG + chr8_3:25356934-25356953 Msa1283740:CDS 45.0%
TCGGATGTGTCAACAACAAG+AGG - chr8_3:25357070-25357089 None:intergenic 45.0%
TATCAGCTTGACTGTAGGGT+CGG - chr8_3:25357089-25357108 None:intergenic 45.0%
ATGCTTATAGAGCGAACCTC+AGG + chr8_3:25357172-25357191 Msa1283740:CDS 45.0%
TTGAAGGAGTTAAGGAGCTG+GGG - chr8_3:25357393-25357412 None:intergenic 45.0%
GTTGAAGGAGTTAAGGAGCT+GGG - chr8_3:25357394-25357413 None:intergenic 45.0%
AGTTGAAGGAGTTAAGGAGC+TGG - chr8_3:25357395-25357414 None:intergenic 45.0%
TCAAGGGCTAAAGCAGTTGA+AGG - chr8_3:25357409-25357428 None:intergenic 45.0%
GCTATGCAGGTTCAATGTCT+TGG + chr8_3:25357475-25357494 Msa1283740:intron 45.0%
! GAAACTTTTCGTCAAAGGGG+CGG + chr8_3:25357565-25357584 Msa1283740:CDS 45.0%
!! GGTTTGAGGACGCTTGTTAT+TGG + chr8_3:25357677-25357696 Msa1283740:CDS 45.0%
!! AGAAGTACTTGCTGCCTCAA+AGG - chr8_3:25357747-25357766 None:intergenic 45.0%
TAAACTGCAGCAAGGTGTAC+CGG + chr8_3:25357853-25357872 Msa1283740:CDS 45.0%
CGGAAGCTATTGAGTCTCTA+AGG + chr8_3:25357873-25357892 Msa1283740:CDS 45.0%
AAAAAACGTAGCTGCGTCTG+AGG + chr8_3:25358063-25358082 Msa1283740:CDS 45.0%
GAGGTTGGCAACTATCTTGA+AGG + chr8_3:25358082-25358101 Msa1283740:CDS 45.0%
AGAGCTGGAATCAACAGCAT+TGG - chr8_3:25358269-25358288 None:intergenic 45.0%
TTCGTGCAAGTTCAAAGAGC+TGG - chr8_3:25358284-25358303 None:intergenic 45.0%
! ACAATCCCAGCCTTTTGCAA+CGG - chr8_3:25358339-25358358 None:intergenic 45.0%
AGATACCATACCATCTCCGA+TGG - chr8_3:25358400-25358419 None:intergenic 45.0%
GATCCAAATGGCTGATGTTG+GGG + chr8_3:25358605-25358624 Msa1283740:CDS 45.0%
CACTGGAATTACCAACGACT+AGG + chr8_3:25358726-25358745 Msa1283740:CDS 45.0%
TTACCAACGACTAGGCTACA+TGG + chr8_3:25358734-25358753 Msa1283740:CDS 45.0%
GTTGTGTGTCTTTGTCTACC+AGG + chr8_3:25359022-25359041 Msa1283740:intron 45.0%
AGCAGTGAAGAGAACATACC+TGG - chr8_3:25359043-25359062 None:intergenic 45.0%
CTACAGAGTCCTCAGCTTTA+TGG + chr8_3:25359180-25359199 Msa1283740:CDS 45.0%
! ACAGAGTCCTCAGCTTTATG+GGG + chr8_3:25359182-25359201 Msa1283740:CDS 45.0%
CTTCCCCAATATGCAAAGAG+AGG - chr8_3:25359297-25359316 None:intergenic 45.0%
ACTTGGCCATGGATGTAATC+AGG + chr8_3:25359382-25359401 Msa1283740:CDS 45.0%
AGTCCACCTGATTACATCCA+TGG - chr8_3:25359391-25359410 None:intergenic 45.0%
! TGGATGTAATCAGGTGGACT+TGG + chr8_3:25359391-25359410 Msa1283740:CDS 45.0%
TGCAATGATAGACCCCCAAA+TGG - chr8_3:25359430-25359449 None:intergenic 45.0%
GATGCTATACCGTCACTTCA+TGG + chr8_3:25359474-25359493 Msa1283740:CDS 45.0%
TACCGTCACTTCATGGTTAC+TGG + chr8_3:25359481-25359500 Msa1283740:CDS 45.0%
! CTCCTTGTGTTTTACAGCGT+TGG - chr8_3:25359533-25359552 None:intergenic 45.0%
CAGAGTCACCAACATGTGAT+AGG + chr8_3:25359672-25359691 Msa1283740:intron 45.0%
CACTCTGACCTATCACATGT+TGG - chr8_3:25359683-25359702 None:intergenic 45.0%
CAACATGTGATAGGTCAGAG+TGG + chr8_3:25359681-25359700 Msa1283740:intron 45.0%
! GTTTTCTCCACACACGAGTT+AGG - chr8_3:25359751-25359770 None:intergenic 45.0%
GTGTGTGGAGAAAACTCTGT+TGG + chr8_3:25359756-25359775 Msa1283740:intron 45.0%
GTGTGGAGAAAACTCTGTTG+GGG + chr8_3:25359758-25359777 Msa1283740:intron 45.0%
AGAAAACTCTGTTGGGGTGA+GGG + chr8_3:25359764-25359783 Msa1283740:intron 45.0%
ATCCAACAGGTTCCCCTTTA+TGG + chr8_3:25359807-25359826 Msa1283740:intron 45.0%
ATCCATAAAGGGGAACCTGT+TGG - chr8_3:25359812-25359831 None:intergenic 45.0%
CTAGGTGGTCCAATAAGACT+AGG - chr8_3:25359985-25360004 None:intergenic 45.0%
!! CTAGTCTTATTGGACCACCT+AGG + chr8_3:25359983-25360002 Msa1283740:intron 45.0%
! CATTTGGAACATGACCTAGG+TGG - chr8_3:25360000-25360019 None:intergenic 45.0%
GTTCAATCCTAGGCTTGAGA+AGG + chr8_3:25360019-25360038 Msa1283740:intron 45.0%
GTTGAGAGTTCCACATTGGA+TGG + chr8_3:25360046-25360065 Msa1283740:intron 45.0%
TGGCAAGCACGACATTATTC+TGG + chr8_3:25360174-25360193 Msa1283740:CDS 45.0%
GAAATTGGACAGCAGAGGAG+AGG - chr8_3:25354897-25354916 None:intergenic 50.0%
TTGTCGACGAGTGATCCTAC+CGG + chr8_3:25355937-25355956 Msa1283740:CDS 50.0%
!! GTTGGTGTTGCCGTGTATTG+TGG + chr8_3:25356204-25356223 Msa1283740:CDS 50.0%
CGTCTCACGACCACAATACA+CGG - chr8_3:25356217-25356236 None:intergenic 50.0%
TCAAGACGGCTCCTCTTAGA+CGG - chr8_3:25356267-25356286 None:intergenic 50.0%
CTTCAGTTTGCGCTGCTGTT+TGG + chr8_3:25356349-25356368 Msa1283740:CDS 50.0%
! GCTCTCATTTTGGGCTATGC+AGG + chr8_3:25357462-25357481 Msa1283740:intron 50.0%
!! GGACGCTTGTTATTGGGATG+CGG + chr8_3:25357684-25357703 Msa1283740:CDS 50.0%
!! GACGCTTGTTATTGGGATGC+GGG + chr8_3:25357685-25357704 Msa1283740:CDS 50.0%
GTCGTGCAGAAGACGTTTAC+AGG + chr8_3:25358021-25358040 Msa1283740:CDS 50.0%
TCGAGTAGCTCCGTTGCAAA+AGG + chr8_3:25358326-25358345 Msa1283740:CDS 50.0%
TAGCTCCGTTGCAAAAGGCT+GGG + chr8_3:25358331-25358350 Msa1283740:CDS 50.0%
TCCGATGGCTAGAGTCATGT+CGG - chr8_3:25358385-25358404 None:intergenic 50.0%
ATGACTCTAGCCATCGGAGA+TGG + chr8_3:25358387-25358406 Msa1283740:CDS 50.0%
TCTAGCCATCGGAGATGGTA+TGG + chr8_3:25358392-25358411 Msa1283740:intron 50.0%
CAACCCCAACATCAGCCATT+TGG - chr8_3:25358611-25358630 None:intergenic 50.0%
CAAATGGCTGATGTTGGGGT+TGG + chr8_3:25358609-25358628 Msa1283740:CDS 50.0%
GGTCAATTTGCACTTGGCCA+TGG + chr8_3:25359371-25359390 Msa1283740:CDS 50.0%
TGGCCATGGATGTAATCAGG+TGG + chr8_3:25359385-25359404 Msa1283740:CDS 50.0%
! AGGTCAGAGTGGTAACGATC+AGG + chr8_3:25359692-25359711 Msa1283740:intron 50.0%
GAGAAAACTCTGTTGGGGTG+AGG + chr8_3:25359763-25359782 Msa1283740:intron 50.0%
ACCTGTTGGATGCACAAGGT+GGG - chr8_3:25359798-25359817 None:intergenic 50.0%
AACCTGTTGGATGCACAAGG+TGG - chr8_3:25359799-25359818 None:intergenic 50.0%
GCGTGTTGAGAGTTCCACAT+TGG + chr8_3:25360042-25360061 Msa1283740:intron 50.0%
GACAGCAGAGGAGAGGTCAA+TGG - chr8_3:25354890-25354909 None:intergenic 55.0%
ACTCAGGAGCTCCGTCTAAG+AGG + chr8_3:25356253-25356272 Msa1283740:CDS 55.0%
! GGAGCTTGTTCGTGTTGGTC+AGG + chr8_3:25356548-25356567 Msa1283740:CDS 55.0%
ACATATGCTGCCGCTGCCTA+TGG + chr8_3:25357145-25357164 Msa1283740:CDS 55.0%
! TAGGGCTGCTTTGCTTCGCA+AGG + chr8_3:25357775-25357794 Msa1283740:CDS 55.0%
CGGTAGCGCCCAATATGCAT+AGG - chr8_3:25357823-25357842 None:intergenic 55.0%
! AACGTAGCTGCGTCTGAGGT+TGG + chr8_3:25358067-25358086 Msa1283740:CDS 55.0%
GTAGCTCCGTTGCAAAAGGC+TGG + chr8_3:25358330-25358349 Msa1283740:CDS 55.0%
GCCGACATGACTCTAGCCAT+CGG + chr8_3:25358381-25358400 Msa1283740:CDS 55.0%
! GATGTTGGGGTTGGCATCAG+TGG + chr8_3:25358618-25358637 Msa1283740:CDS 55.0%
GTTGGCATCAGTGGTCAGGA+GGG + chr8_3:25358627-25358646 Msa1283740:CDS 55.0%
GGAGGGTAGGCAAGCTGTAA+TGG + chr8_3:25358644-25358663 Msa1283740:CDS 55.0%
GCACCATGTAGCCTAGTCGT+TGG - chr8_3:25358740-25358759 None:intergenic 55.0%
ACACATGCAAGCGTGCACAC+AGG - chr8_3:25358913-25358932 None:intergenic 55.0%
! AGTCCTCAGCTTTATGGGGC+TGG + chr8_3:25359186-25359205 Msa1283740:CDS 55.0%
TGTCCAGCCCCATAAAGCTG+AGG - chr8_3:25359192-25359211 None:intergenic 55.0%
TGGGGCTGGACAAAGACAAG+AGG + chr8_3:25359200-25359219 Msa1283740:CDS 55.0%
AAACTCTGTTGGGGTGAGGG+TGG + chr8_3:25359767-25359786 Msa1283740:intron 55.0%
AACTCTGTTGGGGTGAGGGT+GGG + chr8_3:25359768-25359787 Msa1283740:intron 55.0%
ACCCACCTTGTGCATCCAAC+AGG + chr8_3:25359794-25359813 Msa1283740:intron 55.0%
GGGAACCTGTTGGATGCACA+AGG - chr8_3:25359802-25359821 None:intergenic 55.0%
AACACGCCCTTCTCAAGCCT+AGG - chr8_3:25360029-25360048 None:intergenic 55.0%
!! GCTGGGAATTCGGTTCGGAC+CGG + chr8_3:25355571-25355590 Msa1283740:CDS 60.0%
! TGGGGTTGGCATCAGTGGTC+AGG + chr8_3:25358623-25358642 Msa1283740:CDS 60.0%
GGTTGGCATCAGTGGTCAGG+AGG + chr8_3:25358626-25358645 Msa1283740:CDS 60.0%
GCATCAGTGGTCAGGAGGGT+AGG + chr8_3:25358631-25358650 Msa1283740:CDS 60.0%
TCTGTTGGGGTGAGGGTGGG+AGG + chr8_3:25359771-25359790 Msa1283740:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 25354878 25360645 25354878 ID=Msa1283740;Name=Msa1283740
chr8_3 mRNA 25354878 25360645 25354878 ID=Msa1283740-mRNA-1;Parent=Msa1283740;Name=Msa1283740-mRNA-1;_AED=0.04;_eAED=0.04;_QI=432|1|1|1|1|1|7|269|1177
chr8_3 exon 25354878 25356804 25354878 ID=Msa1283740-mRNA-1:exon:8884;Parent=Msa1283740-mRNA-1
chr8_3 exon 25356924 25357230 25356924 ID=Msa1283740-mRNA-1:exon:8885;Parent=Msa1283740-mRNA-1
chr8_3 exon 25357484 25358195 25357484 ID=Msa1283740-mRNA-1:exon:8886;Parent=Msa1283740-mRNA-1
chr8_3 exon 25358285 25358408 25358285 ID=Msa1283740-mRNA-1:exon:8887;Parent=Msa1283740-mRNA-1
chr8_3 exon 25358586 25358805 25358586 ID=Msa1283740-mRNA-1:exon:8888;Parent=Msa1283740-mRNA-1
chr8_3 exon 25359044 25359502 25359044 ID=Msa1283740-mRNA-1:exon:8889;Parent=Msa1283740-mRNA-1
chr8_3 exon 25360160 25360645 25360160 ID=Msa1283740-mRNA-1:exon:8890;Parent=Msa1283740-mRNA-1
chr8_3 five_prime_UTR 25354878 25355309 25354878 ID=Msa1283740-mRNA-1:five_prime_utr;Parent=Msa1283740-mRNA-1
chr8_3 CDS 25355310 25356804 25355310 ID=Msa1283740-mRNA-1:cds;Parent=Msa1283740-mRNA-1
chr8_3 CDS 25356924 25357230 25356924 ID=Msa1283740-mRNA-1:cds;Parent=Msa1283740-mRNA-1
chr8_3 CDS 25357484 25358195 25357484 ID=Msa1283740-mRNA-1:cds;Parent=Msa1283740-mRNA-1
chr8_3 CDS 25358285 25358408 25358285 ID=Msa1283740-mRNA-1:cds;Parent=Msa1283740-mRNA-1
chr8_3 CDS 25358586 25358805 25358586 ID=Msa1283740-mRNA-1:cds;Parent=Msa1283740-mRNA-1
chr8_3 CDS 25359044 25359502 25359044 ID=Msa1283740-mRNA-1:cds;Parent=Msa1283740-mRNA-1
chr8_3 CDS 25360160 25360376 25360160 ID=Msa1283740-mRNA-1:cds;Parent=Msa1283740-mRNA-1
chr8_3 three_prime_UTR 25360377 25360645 25360377 ID=Msa1283740-mRNA-1:three_prime_utr;Parent=Msa1283740-mRNA-1
Gene Sequence

>Msa1283740

ATGATGGATACAAAAAACCCATCTGGGAATTCTTCAAAGATTGAAACTTTCATGCATAATTCATCATCAAGAAGAAGTTCTGGTAGAAATTCAACAAGGGAAGTCACTTTTGGTCACTCTGAGTCCAAACCTGTGAGATATGGATCAAAGGGTGTTGCTGATTCTGAAGCATTCAGCATGTCTCAGAAAGAAATCAGTGATGAAGATGCTAGGTTGATTTATGTTGATGATCCTGATAGAACAAATGAGAGATTTGAATTTGCTGGGAATTCGGTTCGGACCGGAAAATACTCTTTTATAACTTTTCTTCCTAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTATATTTATTTCCTTATAATTGCTATTCTTAATCAGTTACCTCAACTAGCTGTTTTTGGTAGAGGTGTATCAATTTTGCCATTGGCTTTTGTTCTTCTTGTTACTGCTGTGAAAGATGCATATGAGGATTGGAGGAGGCATAGATCAGATAAAGTTGAGAATAATAGGTTAGGATTGGTTTTGGTTAATGGTCATTTCATTGAGAAGAAATGGAAAGATATTAGAGTTGGCGAGATCATTAAAATCAATGCAAATGAACCGATTCCTTGTGATTTTGTTTTGTTGTCGACGAGTGATCCTACCGGTGTTGCTTATGTTCAAACTCTTAATCTAGATGGTGAGTCTAATTTGAAGACTAGGTATGCAAAACAAGAGACTCAATTTAAGTTTCATGAAAAGGAGAGGTTTAGTGGTTTGATTAAGTGCGAGAAACCGAATAGGAATATATATGGATTTCAAGCTACAATGGAGGTTGATGGAAAGAGATTGTCACTTGGTTCCTCGAATATTGTACTTAGAGGATGTGAACTTAAGAATACTAATTGTGTGGTTGGTGTTGCCGTGTATTGTGGTCGTGAGACGAAAGCTATGCTCAACAACTCAGGAGCTCCGTCTAAGAGGAGCCGTCTTGAGACACAAATGAACTCTGAGATCATCATGCTTTCGTTCTTTCTTGTAGTTTTGTGTTCAGTTACTTCAGTTTGCGCTGCTGTTTGGTTAAAGCGAAACAAGAATGAATTGAATCGATTACCTTATTATAGGAAATTGGATTTTTCAAAGGGAAAAGAGGAAAGTTATCAATATTATGGATGGGGAGTGGAAATCCTTTTCACATTCCTCATGTCGGTTATAGTTTACCAGGTTATGATCCCGATATCCTTGTACATTTCTATGGAGCTTGTTCGTGTTGGTCAGGCCTACTTCATGATCAAAGATTCTAGATTGTATGATGAGGCAACAAATTCAAGGTTTCAGTGTAGGGCCTTGAATATCAATGAAGATTTAGGGCAAATTAAATATGTCTTTTCGGACAAAACTGGCACTCTGACTGAGAACAAGATGGAGTTTCAATGCGCTAGTATTTGGGGTGTCGATTACAGTTCTGCAAAAGCCAGCCTTGAGAATGAGCAAGTTGAATACTCTCTTCAAGTGAATGGAAAGGTCTTGAAGCCAAAGATGAAGGTGAAAGTTAATCAAGAGCTTATGCAATTAGCAAAAAGTGGATTTGCAAGCAAAGATGGAAAACGGATATACGATTTCTTTCTTGCACTGGCAGCATGCAATACTATTGTGCCTCTTGTTGTTGACACATCCGACCCTACAGTCAAGCTGATAGATTATCAAGGGGAATCACCAGATGAACAAGCGTTGACATATGCTGCCGCTGCCTATGGTTTTATGCTTATAGAGCGAACCTCAGGTCACATAATGATTGATATTCATGGAGAACAACAAAGGTTCAATGTCTTGGGGTTGCATGAATTTGATAGTGATCGGAAAAGAATGTCTGTTATATTGGGGTGCAATGACAATTCGGTGAAACTTTTCGTCAAAGGGGCGGATACATCAATGTTCAGTGTGATCAATAAATCATTGAATACAGACATAATACAGGATACTGAAACCCATCTTCACTCTTATTCTTCTGTGGGTTTGAGGACGCTTGTTATTGGGATGCGGGACTTAAATGCTTCAGAATTTGATCAATGGCATTTTGCCTTTGAGGCAGCAAGTACTTCTATGATTGGTAGGGCTGCTTTGCTTCGCAAGGTTGCTGCAAATGTAGAAAATAACCTATGCATATTGGGCGCTACCGCTATTGAAGATAAACTGCAGCAAGGTGTACCGGAAGCTATTGAGTCTCTAAGGAAAGCCGGTATTAAAGTATGGGTGTTGACTGGGGACAAACAAGAAACTGCCATATCAATTGGCTACTCGTCAAAGCTACTAACAAGCGGCATGACTCAATTTAGAATTAAGAGCAATAATCGAGAGTCGTGCAGAAGACGTTTACAGGATGCACTTCTCATGTCTAGAAAAAACGTAGCTGCGTCTGAGGTTGGCAACTATCTTGAAGGAAGTTCTGATGGAGTTGTTTCAACTCCTATGGCGTTGATTATTGATGGTACCAGCCTTGTATATATTCTTGATAGTGAACTTGAAGAAGAGCTCTTTGAACTTGCACGAAGATGTTCCGTTGTTCTTTGTTGTCGAGTAGCTCCGTTGCAAAAGGCTGGGATTGTCTCTCTCGTAAAGAATAGGACGGCCGACATGACTCTAGCCATCGGAGATGGTGCTAACGATGTATCAATGATCCAAATGGCTGATGTTGGGGTTGGCATCAGTGGTCAGGAGGGTAGGCAAGCTGTAATGGCTTCAGATTTTGCAATGGGGCAGTTTCGGTTTTTAGTTCCTCTCTTATTTGTACACGGACACTGGAATTACCAACGACTAGGCTACATGGTGCTATACAATTTTTACAGAAATGCTGTCTTTGTGCTAATTCTGTTTTGGTATGTTCTCTTCACTGCTTTCACTTTGACAACAGCTATAAATGAATGGAGCAGCATGTTGTATTCAATAATCTACACTGCAGTGCCAACTATTGTTGTTGCCATTTTTGACAAGGATCTTAGTAAAAGGACTCTTCTACAGAGTCCTCAGCTTTATGGGGCTGGACAAAGACAAGAGGCCTACAACAAAAAATTGTTTTGGTTGACAATAGCTGATACGTTATGGCAAAGCATTGTTGTCTTTTTTGTTCCTCTCTTTGCATATTGGGGAAGCACTGTAGATATAGCAAGTATTGGGGATCTTTGGACTATTTCGATAGTTATTTTGGTCAATTTGCACTTGGCCATGGATGTAATCAGGTGGACTTGGATTTCTCATGCATCCATTTGGGGGTCTATCATTGCAACTTTCATATGTGTCATGGTTGTTGATGCTATACCGTCACTTCATGGTTACTGGGCTATTTTTGATGTGGCAAGCACGACATTATTCTGGTTATGTTTGCTAGGAATACTGATAGCAGCATTGCTTCCACGTTTTGTTGTAAAGTTTATTTATCAATATTATTGTCCCGACGATATTCAGATTTCAAGAGAAATCGAGAAGTTTGAGAATAGAAGGGTCAATGGAGATAGACAGATAGAAATGCTTCACATCTCAAATCCACAAAGATAA
Protein sequence

>Msa1283740

MMDTKNPSGNSSKIETFMHNSSSRRSSGRNSTREVTFGHSESKPVRYGSKGVADSEAFSMSQKEISDEDARLIYVDDPDRTNERFEFAGNSVRTGKYSFITFLPRNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRGVSILPLAFVLLVTAVKDAYEDWRRHRSDKVENNRLGLVLVNGHFIEKKWKDIRVGEIIKINANEPIPCDFVLLSTSDPTGVAYVQTLNLDGESNLKTRYAKQETQFKFHEKERFSGLIKCEKPNRNIYGFQATMEVDGKRLSLGSSNIVLRGCELKNTNCVVGVAVYCGRETKAMLNNSGAPSKRSRLETQMNSEIIMLSFFLVVLCSVTSVCAAVWLKRNKNELNRLPYYRKLDFSKGKEESYQYYGWGVEILFTFLMSVIVYQVMIPISLYISMELVRVGQAYFMIKDSRLYDEATNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSSAKASLENEQVEYSLQVNGKVLKPKMKVKVNQELMQLAKSGFASKDGKRIYDFFLALAACNTIVPLVVDTSDPTVKLIDYQGESPDEQALTYAAAAYGFMLIERTSGHIMIDIHGEQQRFNVLGLHEFDSDRKRMSVILGCNDNSVKLFVKGADTSMFSVINKSLNTDIIQDTETHLHSYSSVGLRTLVIGMRDLNASEFDQWHFAFEAASTSMIGRAALLRKVAANVENNLCILGATAIEDKLQQGVPEAIESLRKAGIKVWVLTGDKQETAISIGYSSKLLTSGMTQFRIKSNNRESCRRRLQDALLMSRKNVAASEVGNYLEGSSDGVVSTPMALIIDGTSLVYILDSELEEELFELARRCSVVLCCRVAPLQKAGIVSLVKNRTADMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMASDFAMGQFRFLVPLLFVHGHWNYQRLGYMVLYNFYRNAVFVLILFWYVLFTAFTLTTAINEWSSMLYSIIYTAVPTIVVAIFDKDLSKRTLLQSPQLYGAGQRQEAYNKKLFWLTIADTLWQSIVVFFVPLFAYWGSTVDIASIGDLWTISIVILVNLHLAMDVIRWTWISHASIWGSIIATFICVMVVDAIPSLHGYWAIFDVASTTLFWLCLLGILIAALLPRFVVKFIYQYYCPDDIQISREIEKFENRRVNGDRQIEMLHISNPQR*