AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0283480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0283480 MtrunA17_Chr2g0298751 92.623 244 18 0 1 244 1 244 3.32e-169 466
Msa0283480 MtrunA17_Chr8g0365711 31.765 170 108 2 51 220 243 404 6.18e-22 93.6
Msa0283480 MtrunA17_Chr1g0211081 31.818 242 135 6 6 218 258 498 2.55e-21 92.4
Msa0283480 MtrunA17_Chr2g0320291 28.272 191 114 5 51 236 132 304 3.24e-18 82.0
Msa0283480 MtrunA17_Chr3g0131691 32.240 183 116 5 48 227 294 471 2.85e-17 80.5
Msa0283480 MtrunA17_Chr7g0252041 32.632 190 115 6 49 232 283 465 2.97e-17 80.5
Msa0283480 MtrunA17_Chr4g0028071 29.101 189 119 4 51 236 148 324 3.50e-16 76.6
Msa0283480 MtrunA17_Chr7g0260841 29.714 175 86 5 53 227 356 493 2.24e-15 75.1
Msa0283480 MtrunA17_Chr7g0275821 27.219 169 92 4 53 216 253 395 3.29e-15 74.3
Msa0283480 MtrunA17_Chr4g0049331 29.878 164 98 4 53 214 136 284 4.32e-15 73.2
Msa0283480 MtrunA17_Chr8g0366751 51.667 60 29 0 53 112 463 522 4.00e-14 71.2
Msa0283480 MtrunA17_Chr5g0411341 50.000 70 32 1 53 119 494 563 9.26e-14 70.5
Msa0283480 MtrunA17_Chr2g0333611 24.878 205 122 5 27 214 3 192 1.47e-13 67.8
Msa0283480 MtrunA17_Chr8g0346161 60.000 45 18 0 53 97 292 336 5.35e-13 67.8
Msa0283480 MtrunA17_Chr2g0280161 28.834 163 102 2 53 214 178 327 7.01e-13 67.4
Msa0283480 MtrunA17_Chr8g0346151 60.000 45 18 0 53 97 280 324 7.62e-13 67.4
Msa0283480 MtrunA17_Chr4g0048851 29.341 167 98 3 50 215 45 192 1.24e-12 65.1
Msa0283480 MtrunA17_Chr5g0400661 27.374 179 107 6 53 219 150 317 2.14e-12 65.9
Msa0283480 MtrunA17_Chr2g0333641 26.768 198 115 6 53 242 138 313 7.26e-12 63.9
Msa0283480 MtrunA17_Chr1g0185621 50.909 55 27 0 43 97 466 520 1.78e-11 63.5
Msa0283480 MtrunA17_Chr3g0141091 51.282 78 34 2 48 122 169 245 2.85e-11 62.4
Msa0283480 MtrunA17_Chr6g0468491 29.240 171 90 7 53 214 138 286 2.85e-11 62.4
Msa0283480 MtrunA17_Chr8g0336681 25.767 163 113 2 53 214 157 312 4.19e-11 62.0
Msa0283480 MtrunA17_Chr5g0400621 39.189 74 42 1 37 107 139 212 5.75e-11 61.6
Msa0283480 MtrunA17_Chr5g0411541 34.810 158 81 4 48 205 152 287 7.32e-11 61.2
Msa0283480 MtrunA17_Chr5g0400671 25.871 201 127 6 29 224 132 315 8.39e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0283480 AT5G57150.1 61.475 244 86 6 1 241 1 239 2.85e-92 272
Msa0283480 AT4G29930.1 53.200 250 103 3 1 238 1 248 7.11e-86 256
Msa0283480 AT4G29930.6 53.333 240 92 3 1 238 1 222 8.91e-84 249
Msa0283480 AT4G29930.2 52.917 240 90 3 1 238 1 219 1.05e-82 247
Msa0283480 AT5G57150.5 63.761 218 71 6 1 215 1 213 1.41e-82 246
Msa0283480 AT5G57150.3 62.557 219 73 6 1 215 1 214 1.36e-81 244
Msa0283480 AT5G57150.2 61.991 221 75 6 1 217 1 216 2.16e-81 243
Msa0283480 AT5G57150.4 62.557 219 73 6 1 215 1 214 5.28e-80 241
Msa0283480 AT4G29930.3 53.070 228 93 3 1 216 1 226 5.86e-76 231
Msa0283480 AT4G29930.7 53.070 228 93 3 1 216 1 226 5.86e-76 231
Msa0283480 AT4G29930.5 52.752 218 80 3 1 216 1 197 1.04e-72 221
Msa0283480 AT4G29930.4 53.143 175 68 3 1 163 1 173 1.06e-51 166
Msa0283480 AT3G26744.1 31.915 188 117 5 49 232 304 484 3.54e-18 83.6
Msa0283480 AT3G26744.4 31.915 188 117 5 49 232 304 484 3.54e-18 83.6
Msa0283480 AT3G26744.2 31.915 188 117 5 49 232 304 484 3.54e-18 83.6
Msa0283480 AT1G12860.1 31.183 186 117 3 49 232 264 440 4.04e-18 83.2
Msa0283480 AT1G01260.1 29.651 172 86 3 53 224 434 570 1.55e-17 81.6
Msa0283480 AT1G01260.2 29.651 172 86 3 53 224 434 570 1.55e-17 81.6
Msa0283480 AT1G01260.3 29.651 172 86 3 53 224 434 570 1.55e-17 81.6
Msa0283480 AT2G28160.2 30.769 156 96 4 51 205 130 274 9.31e-17 78.2
Msa0283480 AT2G16910.1 29.016 193 108 5 51 225 313 494 9.37e-17 79.3
Msa0283480 AT2G28160.1 30.769 156 96 4 51 205 130 274 9.95e-17 78.2
Msa0283480 AT3G26744.6 33.918 171 102 5 49 215 304 467 3.20e-16 77.8
Msa0283480 AT2G46510.1 61.818 55 21 0 53 107 396 450 5.36e-16 77.4
Msa0283480 AT5G46760.1 27.419 186 118 5 53 233 416 589 6.72e-16 77.0
Msa0283480 AT1G12860.2 31.875 160 98 3 49 206 264 414 5.15e-15 74.3
Msa0283480 AT4G17880.1 26.943 193 106 5 53 233 417 586 5.28e-15 74.3
Msa0283480 AT4G16430.1 46.053 76 40 1 53 127 321 396 7.51e-15 73.9
Msa0283480 AT1G32640.1 31.333 150 91 4 53 202 453 590 1.88e-14 72.8
Msa0283480 AT1G63650.3 30.675 163 106 3 56 212 409 570 9.86e-14 70.5
Msa0283480 AT1G63650.1 30.675 163 106 3 56 212 409 570 9.86e-14 70.5
Msa0283480 AT1G63650.2 30.675 163 106 3 56 212 409 570 9.86e-14 70.5
Msa0283480 AT4G37850.2 30.857 175 101 6 53 223 153 311 3.02e-13 68.6
Msa0283480 AT4G37850.1 30.857 175 101 6 53 223 153 311 3.02e-13 68.6
Msa0283480 AT4G21330.1 29.762 168 108 3 51 218 31 188 8.55e-13 65.9
Msa0283480 AT5G46830.1 26.923 182 112 3 53 228 344 510 3.05e-12 66.2
Msa0283480 AT1G10610.1 26.036 169 116 2 51 219 263 422 9.16e-12 64.7
Msa0283480 AT1G10610.3 27.219 169 114 3 51 219 166 325 1.02e-11 64.3
Msa0283480 AT1G10610.2 26.036 169 116 2 51 219 233 392 1.19e-11 64.3
Msa0283480 AT4G00870.1 43.333 60 34 0 53 112 250 309 1.98e-11 63.5
Msa0283480 AT2G22770.1 24.242 198 120 3 33 214 113 296 4.25e-11 62.4
Msa0283480 AT2G22750.4 27.225 191 126 4 53 243 155 332 7.75e-11 61.6

Find 67 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAGGTGGTTGGTTTATT+TGG 0.165944 2_3:-20687608 None:intergenic
TTGTGGATCTATATCGATTT+AGG 0.197301 2_3:+20693727 Msa0283480:three_prime_UTR
TCTTGATCAAAATCATAATT+TGG 0.197391 2_3:-20688578 None:intergenic
CTGATCTGTTCTCTTCTTCT+TGG 0.200519 2_3:-20688621 None:intergenic
TAGCAAAACTCCTTAATAAT+TGG 0.235419 2_3:-20693624 None:intergenic
TGATGATTGAAAGAAGTTTA+AGG 0.235606 2_3:-20687624 None:intergenic
GGATAAAGCTTCAATTATTA+AGG 0.255192 2_3:+20688460 Msa0283480:CDS
TAATTTGGATTAATATTATT+AGG 0.270353 2_3:-20688563 None:intergenic
ACCTATCAAGCTCTTGGGTT+TGG 0.289916 2_3:-20687750 None:intergenic
GTGATGAGTACAAGCTTTAC+TGG 0.315934 2_3:+20687710 Msa0283480:CDS
GAGATAATGGAACTTGAATC+TGG 0.329852 2_3:+20688536 Msa0283480:CDS
GCATTTCATTAGATGCTCAT+AGG 0.341879 2_3:-20693473 None:intergenic
ATGTTTACCTTGCTAATGTT+TGG 0.350291 2_3:-20688030 None:intergenic
TGTTTACCTTGCTAATGTTT+GGG 0.357210 2_3:-20688029 None:intergenic
GATTATTCAAGCTGAGATAA+TGG 0.358095 2_3:+20688523 Msa0283480:CDS
TGAGAGCTGCAACGGCTGTT+TGG 0.367368 2_3:-20693436 None:intergenic
ATAACATGTTAAGAAATAAA+TGG 0.379183 2_3:-20693673 None:intergenic
AGCCACTAGTATATAAGTAT+TGG 0.383506 2_3:+20693518 Msa0283480:three_prime_UTR
CCTGATGATGCTGCACCATC+GGG 0.391505 2_3:-20687925 None:intergenic
GCCACTAGTATATAAGTATT+GGG 0.404265 2_3:+20693519 Msa0283480:three_prime_UTR
TAGATGCTCATAGGGCTTAG+AGG 0.411365 2_3:-20693464 None:intergenic
TTGTGGTTGCAGCTGGGGAT+TGG 0.412240 2_3:+20687867 Msa0283480:intron
TTTACCTCAAGAACTTCAAA+TGG 0.425820 2_3:-20688674 None:intergenic
TCCTGATGATGCTGCACCAT+CGG 0.430185 2_3:-20687926 None:intergenic
TCCAAACCCAAGAGCTTGAT+AGG 0.430262 2_3:+20687749 Msa0283480:CDS
CATTTCATTAGATGCTCATA+GGG 0.433690 2_3:-20693472 None:intergenic
CCCGATGGTGCAGCATCATC+AGG 0.443280 2_3:+20687925 Msa0283480:CDS
TGAAAGAAGTTTAAGGTGGT+TGG 0.451251 2_3:-20687617 None:intergenic
TATCAAGCTCTTGGGTTTGG+AGG 0.453409 2_3:-20687747 None:intergenic
AATTGAGTAGGAAGAAGAAA+GGG 0.460818 2_3:-20693599 None:intergenic
GTTGTTAATGTTGAAATTGA+AGG 0.464958 2_3:-20687673 None:intergenic
TTCTTTCTTTCAGGCAAATG+AGG 0.466600 2_3:+20693385 Msa0283480:intron
TGAGCTTGACATGTAACAAA+AGG 0.468788 2_3:+20690041 Msa0283480:CDS
TCACTATATATATACAAAGT+AGG 0.497510 2_3:+20687571 None:intergenic
AAATTGAGTAGGAAGAAGAA+AGG 0.501022 2_3:-20693600 None:intergenic
TGATGAACTGCTATGAAAAT+CGG 0.502899 2_3:-20693560 None:intergenic
GCAGCTTAGGGTTACATACA+TGG 0.504078 2_3:+20690000 Msa0283480:intron
ACATTGACTCTGAGAGGAAG+AGG 0.514432 2_3:+20687962 Msa0283480:CDS
CTTTCCATTTGAAGTTCTTG+AGG 0.517691 2_3:+20688670 Msa0283480:CDS
AGTATATAAGTATTGGGTTG+AGG 0.521733 2_3:+20693525 Msa0283480:three_prime_UTR
AAGAGCTTCCTGTGTTGCTA+AGG 0.527358 2_3:+20688597 Msa0283480:CDS
TTGGGTTTGGAGGAACATGT+TGG 0.533281 2_3:-20687737 None:intergenic
GAGCTTGACATGTAACAAAA+GGG 0.547151 2_3:+20690042 Msa0283480:CDS
TTCTTGGACCTTAGCAACAC+AGG 0.566724 2_3:-20688605 None:intergenic
AATTTCAACATTAACAACCA+TGG 0.567785 2_3:+20687678 Msa0283480:exon
CTCATCACCAATGTTCTCCA+TGG 0.572679 2_3:-20687695 None:intergenic
AGGGTCATTGAGAGCTGCAA+CGG 0.580316 2_3:-20693444 None:intergenic
AGATGCTCATAGGGCTTAGA+GGG 0.580755 2_3:-20693463 None:intergenic
TGATGATGCTGCACCATCGG+GGG 0.580991 2_3:-20687923 None:intergenic
TAATAATTGGAAAATTGAGT+AGG 0.581054 2_3:-20693611 None:intergenic
TGATGAGTACAAGCTTTACT+GGG 0.584970 2_3:+20687711 Msa0283480:CDS
TTTGAAGACAGTCATCATTG+AGG 0.588729 2_3:+20690153 Msa0283480:CDS
ACCCAATACTTATATACTAG+TGG 0.593092 2_3:-20693520 None:intergenic
ATTGAGTAGGAAGAAGAAAG+GGG 0.596958 2_3:-20693598 None:intergenic
AGATAATGGAACTTGAATCT+GGG 0.607917 2_3:+20688537 Msa0283480:CDS
CTAAGAACATTGACTCTGAG+AGG 0.615826 2_3:+20687956 Msa0283480:CDS
TTGAGTAGGAAGAAGAAAGG+GGG 0.617979 2_3:-20693597 None:intergenic
TTGACTCTGAGAGGAAGAGG+AGG 0.620990 2_3:+20687965 Msa0283480:CDS
TAACAAAAGGGCAGACACAA+TGG 0.621554 2_3:+20690054 Msa0283480:CDS
ACTCTTTGCACTTAGAGCAG+TGG 0.626022 2_3:+20688005 Msa0283480:CDS
TTAACAACCATGGAGAACAT+TGG 0.629027 2_3:+20687688 Msa0283480:exon
AGTATTGGGTTGAGGAACAG+TGG 0.632496 2_3:+20693533 Msa0283480:three_prime_UTR
CAGCTTAGGGTTACATACAT+GGG 0.636587 2_3:+20690001 Msa0283480:intron
CTGATGATGCTGCACCATCG+GGG 0.660135 2_3:-20687924 None:intergenic
AGTGGTCCCAAACATTAGCA+AGG 0.661525 2_3:+20688023 Msa0283480:CDS
TGATTGAAAGAAGTTTAAGG+TGG 0.686687 2_3:-20687621 None:intergenic
ATACATGGGAGAGAATACAA+TGG 0.777577 2_3:+20690015 Msa0283480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATTAATAATTAAATAA+TGG - chr2_3:20688072-20688091 None:intergenic 0.0%
!!! ATATTTTAATTTTTAATATT+CGG + chr2_3:20692221-20692240 Msa0283480:intron 0.0%
!! TAATTTGGATTAATATTATT+AGG - chr2_3:20688566-20688585 None:intergenic 10.0%
!! TATTCCAATTTAAAAAAAAA+AGG + chr2_3:20688780-20688799 Msa0283480:intron 10.0%
!!! AAAAAATTCTGAATTTTTTT+TGG + chr2_3:20689097-20689116 Msa0283480:intron 10.0%
!!! GAAGTTTTTTTTTTTTTTTT+GGG - chr2_3:20691184-20691203 None:intergenic 10.0%
!!! TGAAGTTTTTTTTTTTTTTT+TGG - chr2_3:20691185-20691204 None:intergenic 10.0%
!! AAATCAAAAAAAAAATTACA+GGG - chr2_3:20691299-20691318 None:intergenic 10.0%
!! TAAATCAAAAAAAAAATTAC+AGG - chr2_3:20691300-20691319 None:intergenic 10.0%
!!! AAAAATATATATTTTACAGA+GGG - chr2_3:20691323-20691342 None:intergenic 10.0%
!!! AAAAAATATATATTTTACAG+AGG - chr2_3:20691324-20691343 None:intergenic 10.0%
!! TCTTGAAAAAAAAATAAAAT+TGG + chr2_3:20691381-20691400 Msa0283480:intron 10.0%
!!! TCAAAAAAAATATTTTAAAG+GGG + chr2_3:20691454-20691473 Msa0283480:intron 10.0%
!! ATTCTAATTATTATATGTAT+AGG + chr2_3:20691685-20691704 Msa0283480:intron 10.0%
!! AAAAAAAAAAAAAGGAAAAT+AGG + chr2_3:20691974-20691993 Msa0283480:intron 10.0%
!! TAAAAATTAAAATATGAATG+TGG - chr2_3:20692216-20692235 None:intergenic 10.0%
!!! TATGTTTCATTTTATATTAT+AGG - chr2_3:20692650-20692669 None:intergenic 10.0%
!!! ATTATTAAGTACTATTTTTT+TGG - chr2_3:20692770-20692789 None:intergenic 10.0%
!! AAAAAAAAGAAAAAAATGAA+AGG + chr2_3:20693301-20693320 Msa0283480:intron 10.0%
!!! TGCTTATATTTTATTACAAA+CGG + chr2_3:20688246-20688265 Msa0283480:intron 15.0%
!!! GTTTCCTTTTTTTTTTAAAT+TGG - chr2_3:20688787-20688806 None:intergenic 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG - chr2_3:20688898-20688917 None:intergenic 15.0%
!!! TGAAGATTGAAAATTTTATA+GGG + chr2_3:20689213-20689232 Msa0283480:intron 15.0%
!! ATTTAACCCTAAAAAAAAAA+AGG + chr2_3:20689307-20689326 Msa0283480:intron 15.0%
!!! CTATTTCCTTTTTTTTTTTA+GGG - chr2_3:20689316-20689335 None:intergenic 15.0%
!!! TCTATTTCCTTTTTTTTTTT+AGG - chr2_3:20689317-20689336 None:intergenic 15.0%
!!! GTAATATATTTTCTCTATTA+GGG - chr2_3:20689475-20689494 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr2_3:20689852-20689871 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr2_3:20689876-20689895 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr2_3:20689875-20689894 Msa0283480:intron 15.0%
!!! TTGTTGTTTTATATTATTTG+AGG - chr2_3:20690321-20690340 None:intergenic 15.0%
!! AATGTAAATATAATATGTGT+TGG + chr2_3:20690713-20690732 Msa0283480:intron 15.0%
!! TATTAACCTAATCATTTATA+AGG - chr2_3:20691234-20691253 None:intergenic 15.0%
!! TTATAAATGATTAGGTTAAT+AGG + chr2_3:20691233-20691252 Msa0283480:intron 15.0%
!!! AAATAAAATTGGTTTTTGTT+TGG + chr2_3:20691392-20691411 Msa0283480:intron 15.0%
!! GGTAAATAAAAAAAATTACA+GGG + chr2_3:20691424-20691443 Msa0283480:intron 15.0%
!! GTAAATAAAAAAAATTACAG+GGG + chr2_3:20691425-20691444 Msa0283480:intron 15.0%
!! TAAATAAAAAAAATTACAGG+GGG + chr2_3:20691426-20691445 Msa0283480:intron 15.0%
!!! CAAAAAAAATATTTTAAAGG+GGG + chr2_3:20691455-20691474 Msa0283480:intron 15.0%
!! TCCTCAAAAAAAAAAAAAAA+AGG + chr2_3:20691966-20691985 Msa0283480:intron 15.0%
!!! TCCTTTTTTTTTTTTTTTTG+AGG - chr2_3:20691970-20691989 None:intergenic 15.0%
!!! ATAAGTCTTTAATTTAATGT+TGG - chr2_3:20692021-20692040 None:intergenic 15.0%
!!! AAATTTAACTTATTTAGCAT+AGG + chr2_3:20692555-20692574 Msa0283480:intron 15.0%
!!! ATTTTATTTTTGGTTACAAT+TGG - chr2_3:20692805-20692824 None:intergenic 15.0%
!!! TTAATTTTGAAATGTTGAAT+TGG - chr2_3:20692837-20692856 None:intergenic 15.0%
!!! AAAAGTATTATAACTTATCA+TGG + chr2_3:20693067-20693086 Msa0283480:intron 15.0%
!! ATAACATGTTAAGAAATAAA+TGG - chr2_3:20693676-20693695 None:intergenic 15.0%
!! TTGAATCAAAGTGAATTAAA+TGG - chr2_3:20687783-20687802 None:intergenic 20.0%
!!! ATTAGTACTACTCAATTTTT+TGG + chr2_3:20688089-20688108 Msa0283480:intron 20.0%
!!! TTAGTACTACTCAATTTTTT+GGG + chr2_3:20688090-20688109 Msa0283480:intron 20.0%
!!! TTTGTTTGAATTAAGTGTTT+TGG + chr2_3:20688139-20688158 Msa0283480:intron 20.0%
!!! TTGTTTGAATTAAGTGTTTT+GGG + chr2_3:20688140-20688159 Msa0283480:intron 20.0%
!! CTACTATCTTCATAAAATAT+AGG + chr2_3:20688169-20688188 Msa0283480:intron 20.0%
!! GAAATAATTAAACCATATGA+TGG - chr2_3:20688372-20688391 None:intergenic 20.0%
!! AATTTCTTTCTAATTATGAG+TGG + chr2_3:20688413-20688432 Msa0283480:intron 20.0%
!! TCTTGATCAAAATCATAATT+TGG - chr2_3:20688581-20688600 None:intergenic 20.0%
!! GAAAAGTTGACATATTTATA+GGG - chr2_3:20689273-20689292 None:intergenic 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG - chr2_3:20688899-20688918 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG + chr2_3:20688902-20688921 Msa0283480:intron 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG + chr2_3:20689181-20689200 Msa0283480:intron 20.0%
!!! AAATTTTCAATCTTCACTTT+AGG - chr2_3:20689209-20689228 None:intergenic 20.0%
!!! GTGAAGATTGAAAATTTTAT+AGG + chr2_3:20689212-20689231 Msa0283480:intron 20.0%
!!! AAGTTGAAGGAAAATTTTAA+AGG + chr2_3:20689241-20689260 Msa0283480:intron 20.0%
!!! AGTTGAAGGAAAATTTTAAA+GGG + chr2_3:20689242-20689261 Msa0283480:intron 20.0%
!! GAAAAGTTGACATATTTATA+GGG + chr2_3:20689273-20689292 Msa0283480:intron 20.0%
!!! TTTAGGGTTAAATATGTTTT+TGG - chr2_3:20689300-20689319 None:intergenic 20.0%
!! AACTTCAAAAAAATAGATAG+TGG + chr2_3:20689374-20689393 Msa0283480:intron 20.0%
!! ACTTCAAAAAAATAGATAGT+GGG + chr2_3:20689375-20689394 Msa0283480:intron 20.0%
!!! GGTAATATATTTTCTCTATT+AGG - chr2_3:20689476-20689495 None:intergenic 20.0%
!! GTTAGCAAAAAAAATAATAG+TGG - chr2_3:20689533-20689552 None:intergenic 20.0%
!!! TCTTTAATCTATTTGTTGTT+GGG - chr2_3:20689564-20689583 None:intergenic 20.0%
!!! TTCTTTAATCTATTTGTTGT+TGG - chr2_3:20689565-20689584 None:intergenic 20.0%
!! TGATGCTAAAAAAATAAATG+TGG + chr2_3:20689619-20689638 Msa0283480:intron 20.0%
!! GATGCTAAAAAAATAAATGT+GGG + chr2_3:20689620-20689639 Msa0283480:intron 20.0%
!! ATGCTAAAAAAATAAATGTG+GGG + chr2_3:20689621-20689640 Msa0283480:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr2_3:20689789-20689808 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr2_3:20689866-20689885 Msa0283480:intron 20.0%
!! AGAAAGTGAAATGAAATTAA+AGG - chr2_3:20690191-20690210 None:intergenic 20.0%
!! ACTTGTAATAGAAAAATGTT+TGG - chr2_3:20690373-20690392 None:intergenic 20.0%
!!! TATGCTTTTAATTTTTGTGT+TGG - chr2_3:20690405-20690424 None:intergenic 20.0%
!! TACAACATGAATATTAAAAC+TGG + chr2_3:20690434-20690453 Msa0283480:intron 20.0%
!! ACTGGAATTTAGATAAATTT+AGG + chr2_3:20690452-20690471 Msa0283480:intron 20.0%
!! CTGGAATTTAGATAAATTTA+GGG + chr2_3:20690453-20690472 Msa0283480:intron 20.0%
!!! TCATTACTTTTTGTAAACTT+TGG + chr2_3:20690531-20690550 Msa0283480:intron 20.0%
!!! TATCTGAATTTATCTCTTTT+TGG - chr2_3:20690633-20690652 None:intergenic 20.0%
!!! TTGTGTTACCTTATTTATTT+CGG + chr2_3:20690838-20690857 Msa0283480:intron 20.0%
!! TTATGACCTTATAAATGATT+AGG + chr2_3:20691225-20691244 Msa0283480:intron 20.0%
!!! AAGAAATTTTCGTTTTTGTT+TGG - chr2_3:20691365-20691384 None:intergenic 20.0%
!!! TTTTTTTATTTACCCCTAAT+AGG - chr2_3:20691418-20691437 None:intergenic 20.0%
!! GGGTAAATAAAAAAAATTAC+AGG + chr2_3:20691423-20691442 Msa0283480:intron 20.0%
!! AAATAAAAAAAATTACAGGG+GGG + chr2_3:20691427-20691446 Msa0283480:intron 20.0%
!! ATAAAAAAGAGTTGAATCAT+GGG - chr2_3:20691525-20691544 None:intergenic 20.0%
!! AATAAAAAAGAGTTGAATCA+TGG - chr2_3:20691526-20691545 None:intergenic 20.0%
!! ATTAGAATAATCCATTTCTA+TGG - chr2_3:20691673-20691692 None:intergenic 20.0%
!! AATGTGTGCATAATTAATAT+TGG + chr2_3:20691823-20691842 Msa0283480:intron 20.0%
!! TACAGTATAATATTACCATA+CGG - chr2_3:20691915-20691934 None:intergenic 20.0%
!!! TATTTTCCTATTTTGTGAAA+AGG - chr2_3:20691942-20691961 None:intergenic 20.0%
!!! TTTTCACAAAATAGGAAAAT+AGG + chr2_3:20691941-20691960 Msa0283480:intron 20.0%
!!! ATTAGGTTATGGTTTTATAT+TGG - chr2_3:20692091-20692110 None:intergenic 20.0%
!!! AAGTCAAAAGAGAAAATTTT+AGG - chr2_3:20692410-20692429 None:intergenic 20.0%
!!! GAGAGATAGAATTTTATTTT+TGG - chr2_3:20692815-20692834 None:intergenic 20.0%
!! AGAATTTAGAAGGAATAAAA+AGG - chr2_3:20692920-20692939 None:intergenic 20.0%
!! TTATTCCTTCTAAATTCTAA+TGG + chr2_3:20692922-20692941 Msa0283480:intron 20.0%
!! ATAATCCATTAGAATTTAGA+AGG - chr2_3:20692930-20692949 None:intergenic 20.0%
!!! CTAAATTCTAATGGATTATT+TGG + chr2_3:20692931-20692950 Msa0283480:intron 20.0%
!! TTTAACTAAAAAATATGGAC+TGG - chr2_3:20693013-20693032 None:intergenic 20.0%
!!! ATTATGAGGTACTTTTTATA+GGG - chr2_3:20693137-20693156 None:intergenic 20.0%
!!! AATTATGAGGTACTTTTTAT+AGG - chr2_3:20693138-20693157 None:intergenic 20.0%
!! TATTACAATGACAAATTATG+AGG - chr2_3:20693151-20693170 None:intergenic 20.0%
!!! TTTTAATTCAAAATTAGGGA+AGG + chr2_3:20693258-20693277 Msa0283480:intron 20.0%
!! TTTAATTCAAAATTAGGGAA+GGG + chr2_3:20693259-20693278 Msa0283480:intron 20.0%
!! TAATAATTGGAAAATTGAGT+AGG - chr2_3:20693614-20693633 None:intergenic 20.0%
!!! ACTCAATTTTCCAATTATTA+AGG + chr2_3:20693614-20693633 Msa0283480:three_prime_UTR 20.0%
!!! AAGTTCATTTTAAACAATTG+TGG + chr2_3:20693710-20693729 Msa0283480:three_prime_UTR 20.0%
! TGATGATTGAAAGAAGTTTA+AGG - chr2_3:20687627-20687646 None:intergenic 25.0%
! GTTGTTAATGTTGAAATTGA+AGG - chr2_3:20687676-20687695 None:intergenic 25.0%
! AATTTCAACATTAACAACCA+TGG + chr2_3:20687678-20687697 Msa0283480:exon 25.0%
! ATCATGGTAATTGAGATATA+TGG + chr2_3:20687844-20687863 Msa0283480:intron 25.0%
! GGTACAAAAGTAAATGAATT+TGG + chr2_3:20688190-20688209 Msa0283480:intron 25.0%
! TACAACTCTTTGATATCTAT+TGG + chr2_3:20688335-20688354 Msa0283480:intron 25.0%
! GAAAACTATTAACCATCATA+TGG + chr2_3:20688357-20688376 Msa0283480:intron 25.0%
! GGATAAAGCTTCAATTATTA+AGG + chr2_3:20688460-20688479 Msa0283480:CDS 25.0%
! AAAAAAAGGAAACCAACTTA+AGG + chr2_3:20688794-20688813 Msa0283480:intron 25.0%
! AAAAAAGGAAACCAACTTAA+GGG + chr2_3:20688795-20688814 Msa0283480:intron 25.0%
! AACATATTTAACCCTTAAGT+TGG - chr2_3:20688809-20688828 None:intergenic 25.0%
! CGAAAAGTTGACATATTTAT+AGG - chr2_3:20689272-20689291 None:intergenic 25.0%
! CGAAAAGTTGACATATTTAT+AGG + chr2_3:20689272-20689291 Msa0283480:intron 25.0%
!!! TTTATATTTGGTTCTAAGCA+TGG - chr2_3:20689410-20689429 None:intergenic 25.0%
! TTAAGGTGGTGATTTATATT+TGG - chr2_3:20689422-20689441 None:intergenic 25.0%
! TATAAATCACCACCTTAATA+AGG + chr2_3:20689424-20689443 Msa0283480:intron 25.0%
!!! TTTAATCTATTTGTTGTTGG+GGG - chr2_3:20689562-20689581 None:intergenic 25.0%
!!! CTTTAATCTATTTGTTGTTG+GGG - chr2_3:20689563-20689582 None:intergenic 25.0%
! AGATTAAAGAAGAGATTGTA+AGG + chr2_3:20689574-20689593 Msa0283480:intron 25.0%
! AATGATTAAGAGAAAGAGAA+TGG - chr2_3:20689909-20689928 None:intergenic 25.0%
!!! TCCTATTTAATTTGCTTTGT+AGG + chr2_3:20690266-20690285 Msa0283480:intron 25.0%
! ACCTACAAAGCAAATTAAAT+AGG - chr2_3:20690270-20690289 None:intergenic 25.0%
! AAATGTTTGGCTATATCATT+TGG - chr2_3:20690360-20690379 None:intergenic 25.0%
! AAATTTAGGGAGATATATCA+AGG + chr2_3:20690466-20690485 Msa0283480:intron 25.0%
!! TATATCAAGGTGTATTCTTT+TGG + chr2_3:20690479-20690498 Msa0283480:intron 25.0%
! GTAAATATAATATGTGTTGG+TGG + chr2_3:20690716-20690735 Msa0283480:intron 25.0%
! ATAGTGTGATACATGAATTA+GGG + chr2_3:20690753-20690772 Msa0283480:intron 25.0%
! GACATAAAAGACCAATAATT+AGG + chr2_3:20690798-20690817 Msa0283480:intron 25.0%
! AAAAACAAAATTAAACCACG+CGG - chr2_3:20690882-20690901 None:intergenic 25.0%
!! TTTTCTTCTTCGTCTAATAA+TGG + chr2_3:20690918-20690937 Msa0283480:intron 25.0%
!! CATGCTATAATTTGCAAAAT+GGG + chr2_3:20690969-20690988 Msa0283480:intron 25.0%
!! AAGTTTAAGTGTAGTGTTTT+AGG + chr2_3:20691094-20691113 Msa0283480:intron 25.0%
!! AGTTTAAGTGTAGTGTTTTA+GGG + chr2_3:20691095-20691114 Msa0283480:intron 25.0%
! AGTTTAACGAACATTAATTG+AGG + chr2_3:20691144-20691163 Msa0283480:intron 25.0%
!!! TTTTTGATTTACCCTCAAAT+AGG + chr2_3:20691339-20691358 Msa0283480:intron 25.0%
!!! ATATTTTAAAGGGGGAAAAT+CGG + chr2_3:20691463-20691482 Msa0283480:intron 25.0%
!! TACTTTCCTTTTCACAAAAT+AGG + chr2_3:20691933-20691952 Msa0283480:intron 25.0%
! AGCATATTCCATCAATTAAT+AGG + chr2_3:20692045-20692064 Msa0283480:intron 25.0%
! GCATATTCCATCAATTAATA+GGG + chr2_3:20692046-20692065 Msa0283480:intron 25.0%
! AGAAAATCCCTATTAATTGA+TGG - chr2_3:20692056-20692075 None:intergenic 25.0%
!!! CTTTTAGTTCTTCTTTCAAA+AGG - chr2_3:20692185-20692204 None:intergenic 25.0%
! AAAATGAAACATATTGACGT+AGG + chr2_3:20692657-20692676 Msa0283480:intron 25.0%
!! TTTTTATAGGGTACATAATG+AGG - chr2_3:20693125-20693144 None:intergenic 25.0%
! TTAATTCAAAATTAGGGAAG+GGG + chr2_3:20693260-20693279 Msa0283480:intron 25.0%
! CCTGAAAGAAAGAAAAAAAA+AGG - chr2_3:20693379-20693398 None:intergenic 25.0%
!!! CCTTTTTTTTTCTTTCTTTC+AGG + chr2_3:20693376-20693395 Msa0283480:intron 25.0%
! TAGCAAAACTCCTTAATAAT+TGG - chr2_3:20693627-20693646 None:intergenic 25.0%
!! TTTAAGGTGGTTGGTTTATT+TGG - chr2_3:20687611-20687630 None:intergenic 30.0%
TGATTGAAAGAAGTTTAAGG+TGG - chr2_3:20687624-20687643 None:intergenic 30.0%
! TTTTTACCTATCAAGCTCTT+GGG - chr2_3:20687758-20687777 None:intergenic 30.0%
! ATTTTTACCTATCAAGCTCT+TGG - chr2_3:20687759-20687778 None:intergenic 30.0%
TCACTTTGATTCAAGTATGA+AGG + chr2_3:20687789-20687808 Msa0283480:intron 30.0%
GTAATTGAGATATATGGTTG+TGG + chr2_3:20687850-20687869 Msa0283480:intron 30.0%
TGTTTACCTTGCTAATGTTT+GGG - chr2_3:20688032-20688051 None:intergenic 30.0%
ATGTTTACCTTGCTAATGTT+TGG - chr2_3:20688033-20688052 None:intergenic 30.0%
ACTAATATTATGTGACACAG+TGG + chr2_3:20688273-20688292 Msa0283480:intron 30.0%
CTAATATTATGTGACACAGT+GGG + chr2_3:20688274-20688293 Msa0283480:intron 30.0%
!! TGACTTTTTCTTTTTCCAGA+TGG + chr2_3:20688439-20688458 Msa0283480:intron 30.0%
! TAATTGAAGCTTTATCCATC+TGG - chr2_3:20688457-20688476 None:intergenic 30.0%
GATTATTCAAGCTGAGATAA+TGG + chr2_3:20688523-20688542 Msa0283480:CDS 30.0%
!! AGATAATGGAACTTGAATCT+GGG + chr2_3:20688537-20688556 Msa0283480:CDS 30.0%
TTTACCTCAAGAACTTCAAA+TGG - chr2_3:20688677-20688696 None:intergenic 30.0%
TTGAAGTTCTTGAGGTAAAT+TGG + chr2_3:20688678-20688697 Msa0283480:intron 30.0%
! AGTCGAAGGAAAATTTTAGA+GGG - chr2_3:20688869-20688888 None:intergenic 30.0%
! AAGTCGAAGGAAAATTTTAG+AGG - chr2_3:20688870-20688889 None:intergenic 30.0%
TTATAGGGACTAAAAGTTGA+AGG + chr2_3:20689228-20689247 Msa0283480:intron 30.0%
TGGTATTTGATAGGTTGTAA+TGG - chr2_3:20689497-20689516 None:intergenic 30.0%
!! AGTCTGATTTGGTATTTGAT+AGG - chr2_3:20689506-20689525 None:intergenic 30.0%
!! ATAGTGGATAAAGTCTGATT+TGG - chr2_3:20689517-20689536 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr2_3:20689958-20689977 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr2_3:20689958-20689977 Msa0283480:intron 30.0%
TTTGAGGAAGAAGAAAATGA+AGG - chr2_3:20690305-20690324 None:intergenic 30.0%
TCTATGAAATATGCTTGAGA+AGG - chr2_3:20690567-20690586 None:intergenic 30.0%
GATAGTGTGATACATGAATT+AGG + chr2_3:20690752-20690771 Msa0283480:intron 30.0%
GAAACACGTTTCCTAATTAT+TGG - chr2_3:20690812-20690831 None:intergenic 30.0%
GTCATATGCCGAAATAAATA+AGG - chr2_3:20690849-20690868 None:intergenic 30.0%
TCTAATAATGGCAAAATGTC+AGG + chr2_3:20690930-20690949 Msa0283480:intron 30.0%
! GCATGCTATAATTTGCAAAA+TGG + chr2_3:20690968-20690987 Msa0283480:intron 30.0%
! TTTGAAATCAACCCTAACTT+TGG - chr2_3:20691125-20691144 None:intergenic 30.0%
TAACTTAACTTTCGCTATCA+AGG - chr2_3:20691208-20691227 None:intergenic 30.0%
CAGAAATGACCTATATTACA+GGG - chr2_3:20691268-20691287 None:intergenic 30.0%
!! TTTTTGTTTGGCCTATTTGA+GGG - chr2_3:20691353-20691372 None:intergenic 30.0%
GGAAATGACCTATATTACAT+GGG + chr2_3:20691484-20691503 Msa0283480:intron 30.0%
GAAATGACCTATATTACATG+GGG + chr2_3:20691485-20691504 Msa0283480:intron 30.0%
! GTTTTTACCCCATGTAATAT+AGG - chr2_3:20691495-20691514 None:intergenic 30.0%
CAACATACGTTAATGAATGT+TGG - chr2_3:20691556-20691575 None:intergenic 30.0%
! CCATTTCTATGGTTTAGAAT+GGG - chr2_3:20691662-20691681 None:intergenic 30.0%
TCCATTTCTATGGTTTAGAA+TGG - chr2_3:20691663-20691682 None:intergenic 30.0%
AGTATAATATTACCATACGG+CGG - chr2_3:20691912-20691931 None:intergenic 30.0%
!!! AGGTTATGGTTTTATATTGG+AGG - chr2_3:20692088-20692107 None:intergenic 30.0%
ATGAAGAATCGATTAGGTTA+TGG - chr2_3:20692102-20692121 None:intergenic 30.0%
TTTAGCATGAAGAATCGATT+AGG - chr2_3:20692108-20692127 None:intergenic 30.0%
!!! TTTTGACTTTCTTAACTCTG+TGG + chr2_3:20692421-20692440 Msa0283480:intron 30.0%
TAAATTAGTCCCAAAAGAGA+GGG + chr2_3:20692863-20692882 Msa0283480:intron 30.0%
! TTTACTAAACCCTCTCTTTT+GGG - chr2_3:20692875-20692894 None:intergenic 30.0%
! TTTTACTAAACCCTCTCTTT+TGG - chr2_3:20692876-20692895 None:intergenic 30.0%
!! CTAATGGATTATTTGGTTCA+AGG + chr2_3:20692938-20692957 Msa0283480:intron 30.0%
TAGCTAGAAAACAAAGAAAC+AGG + chr2_3:20693097-20693116 Msa0283480:intron 30.0%
! AAAATATATCTAGCTTGACG+TGG + chr2_3:20693214-20693233 Msa0283480:intron 30.0%
TAATTCAAAATTAGGGAAGG+GGG + chr2_3:20693261-20693280 Msa0283480:intron 30.0%
CATTTCATTAGATGCTCATA+GGG - chr2_3:20693475-20693494 None:intergenic 30.0%
AGCCACTAGTATATAAGTAT+TGG + chr2_3:20693518-20693537 Msa0283480:three_prime_UTR 30.0%
GCCACTAGTATATAAGTATT+GGG + chr2_3:20693519-20693538 Msa0283480:three_prime_UTR 30.0%
ACCCAATACTTATATACTAG+TGG - chr2_3:20693523-20693542 None:intergenic 30.0%
!! AGTATATAAGTATTGGGTTG+AGG + chr2_3:20693525-20693544 Msa0283480:three_prime_UTR 30.0%
TGATGAACTGCTATGAAAAT+CGG - chr2_3:20693563-20693582 None:intergenic 30.0%
AATTGAGTAGGAAGAAGAAA+GGG - chr2_3:20693602-20693621 None:intergenic 30.0%
AAATTGAGTAGGAAGAAGAA+AGG - chr2_3:20693603-20693622 None:intergenic 30.0%
!! TTGTGGATCTATATCGATTT+AGG + chr2_3:20693727-20693746 Msa0283480:three_prime_UTR 30.0%
! TGAAAGAAGTTTAAGGTGGT+TGG - chr2_3:20687620-20687639 None:intergenic 35.0%
TTAACAACCATGGAGAACAT+TGG + chr2_3:20687688-20687707 Msa0283480:exon 35.0%
TGATGAGTACAAGCTTTACT+GGG + chr2_3:20687711-20687730 Msa0283480:CDS 35.0%
!! GAGATAATGGAACTTGAATC+TGG + chr2_3:20688536-20688555 Msa0283480:CDS 35.0%
! CTTTCCATTTGAAGTTCTTG+AGG + chr2_3:20688670-20688689 Msa0283480:CDS 35.0%
AAGATGATGATAGAGAGAGT+GGG - chr2_3:20688704-20688723 None:intergenic 35.0%
AAAGATGATGATAGAGAGAG+TGG - chr2_3:20688705-20688724 None:intergenic 35.0%
TTATAGGGACTAAAAGTCGA+AGG - chr2_3:20688883-20688902 None:intergenic 35.0%
!! ATTTTCTCTATTAGGGTACC+TGG - chr2_3:20689468-20689487 None:intergenic 35.0%
GCATCAATAATACAAGAGAG+AGG - chr2_3:20689605-20689624 None:intergenic 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr2_3:20689823-20689842 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr2_3:20689827-20689846 None:intergenic 35.0%
ATACATGGGAGAGAATACAA+TGG + chr2_3:20690015-20690034 Msa0283480:CDS 35.0%
TGAGCTTGACATGTAACAAA+AGG + chr2_3:20690041-20690060 Msa0283480:CDS 35.0%
GAGCTTGACATGTAACAAAA+GGG + chr2_3:20690042-20690061 Msa0283480:CDS 35.0%
TTTGAAGACAGTCATCATTG+AGG + chr2_3:20690153-20690172 Msa0283480:CDS 35.0%
AGGAAGAAGAAAATGAAGGT+TGG - chr2_3:20690301-20690320 None:intergenic 35.0%
ATGTATCACACTATCACTAG+TGG - chr2_3:20690747-20690766 None:intergenic 35.0%
GTTACCTTGTATTCATGAGA+GGG + chr2_3:20690775-20690794 Msa0283480:intron 35.0%
TTACCTTGTATTCATGAGAG+GGG + chr2_3:20690776-20690795 Msa0283480:intron 35.0%
!! TGACAAGGATTTTGCCATTT+TGG - chr2_3:20691034-20691053 None:intergenic 35.0%
TCTTTACCTCCCTGTAATAT+AGG + chr2_3:20691256-20691275 Msa0283480:intron 35.0%
AAATGACCTATATTACAGGG+AGG - chr2_3:20691265-20691284 None:intergenic 35.0%
CCAGAAATGACCTATATTAC+AGG - chr2_3:20691269-20691288 None:intergenic 35.0%
CCTGTAATATAGGTCATTTC+TGG + chr2_3:20691266-20691285 Msa0283480:intron 35.0%
!! GTTTTTGTTTGGCCTATTTG+AGG - chr2_3:20691354-20691373 None:intergenic 35.0%
!! TGGTTTTTGTTTGGCCTATT+AGG + chr2_3:20691401-20691420 Msa0283480:intron 35.0%
!! GGTTTTTGTTTGGCCTATTA+GGG + chr2_3:20691402-20691421 Msa0283480:intron 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG + chr2_3:20691403-20691422 Msa0283480:intron 35.0%
CGGAAATGACCTATATTACA+TGG + chr2_3:20691483-20691502 Msa0283480:intron 35.0%
! GAGTTGAATCATGGGTTAAT+AGG - chr2_3:20691517-20691536 None:intergenic 35.0%
CCCATTCTAAACCATAGAAA+TGG + chr2_3:20691659-20691678 Msa0283480:intron 35.0%
TACGGCGGTGAAAAATAAAA+TGG - chr2_3:20691897-20691916 None:intergenic 35.0%
!!! TTTTATTTTTCACCGCCGTA+TGG + chr2_3:20691897-20691916 Msa0283480:intron 35.0%
GCGACATATCAATCAATAGA+GGG - chr2_3:20692462-20692481 None:intergenic 35.0%
TGCGACATATCAATCAATAG+AGG - chr2_3:20692463-20692482 None:intergenic 35.0%
CTAAATTAGTCCCAAAAGAG+AGG + chr2_3:20692862-20692881 Msa0283480:intron 35.0%
! TATTTGGTTCAAGGATTCAG+AGG + chr2_3:20692947-20692966 Msa0283480:intron 35.0%
ATTCAGAGGCTAAGTAATTG+TGG + chr2_3:20692961-20692980 Msa0283480:intron 35.0%
TTCTTTCTTTCAGGCAAATG+AGG + chr2_3:20693385-20693404 Msa0283480:intron 35.0%
GCATTTCATTAGATGCTCAT+AGG - chr2_3:20693476-20693495 None:intergenic 35.0%
ATTGAGTAGGAAGAAGAAAG+GGG - chr2_3:20693601-20693620 None:intergenic 35.0%
GTGATGAGTACAAGCTTTAC+TGG + chr2_3:20687710-20687729 Msa0283480:CDS 40.0%
!! GGATTGGATGAAGCTTTTTC+AGG + chr2_3:20687883-20687902 Msa0283480:CDS 40.0%
!! CTAAGAACATTGACTCTGAG+AGG + chr2_3:20687956-20687975 Msa0283480:CDS 40.0%
TATTATGTGACACAGTGGGT+AGG + chr2_3:20688278-20688297 Msa0283480:intron 40.0%
CTGATCTGTTCTCTTCTTCT+TGG - chr2_3:20688624-20688643 None:intergenic 40.0%
!! AATGGTAGGCCTTATTAAGG+TGG - chr2_3:20689436-20689455 None:intergenic 40.0%
!! ATCTATTTGTTGTTGGGGGT+TGG - chr2_3:20689558-20689577 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr2_3:20689962-20689981 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr2_3:20689824-20689843 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr2_3:20689962-20689981 Msa0283480:intron 40.0%
! TTTGAAACGGAGGGAGTATA+TGG + chr2_3:20689971-20689990 Msa0283480:intron 40.0%
TATATGGTTGAGTGCAGCTT+AGG + chr2_3:20689987-20690006 Msa0283480:intron 40.0%
ATATGGTTGAGTGCAGCTTA+GGG + chr2_3:20689988-20690007 Msa0283480:intron 40.0%
CAGCTTAGGGTTACATACAT+GGG + chr2_3:20690001-20690020 Msa0283480:intron 40.0%
TAACAAAAGGGCAGACACAA+TGG + chr2_3:20690054-20690073 Msa0283480:CDS 40.0%
GGTTACCTTGTATTCATGAG+AGG + chr2_3:20690774-20690793 Msa0283480:intron 40.0%
CAAAATTAAACCACGCGGTA+AGG - chr2_3:20690877-20690896 None:intergenic 40.0%
!!! GGATTTTGCCATTTTGGTGT+GGG - chr2_3:20691028-20691047 None:intergenic 40.0%
!!! AGGATTTTGCCATTTTGGTG+TGG - chr2_3:20691029-20691048 None:intergenic 40.0%
ATACACACGCAACTATGACA+AGG - chr2_3:20691049-20691068 None:intergenic 40.0%
!!! TTTTAGGGCTCACCAAAGTT+AGG + chr2_3:20691110-20691129 Msa0283480:intron 40.0%
! TTTAGGGCTCACCAAAGTTA+GGG + chr2_3:20691111-20691130 Msa0283480:intron 40.0%
GAAATGCTAACCAGTGCTTT+CGG + chr2_3:20692295-20692314 Msa0283480:intron 40.0%
! TAATTAGTGTCCGAAAGCAC+TGG - chr2_3:20692308-20692327 None:intergenic 40.0%
GTGCTTTCGGACACTAATTA+AGG + chr2_3:20692308-20692327 Msa0283480:intron 40.0%
CTTTCTTAACTCTGTGGCAT+TGG + chr2_3:20692427-20692446 Msa0283480:intron 40.0%
TTGATATGTCGCACAATGAG+TGG + chr2_3:20692470-20692489 Msa0283480:intron 40.0%
TTGAGTAGGAAGAAGAAAGG+GGG - chr2_3:20693600-20693619 None:intergenic 40.0%
CTCATCACCAATGTTCTCCA+TGG - chr2_3:20687698-20687717 None:intergenic 45.0%
TTGGGTTTGGAGGAACATGT+TGG - chr2_3:20687740-20687759 None:intergenic 45.0%
TATCAAGCTCTTGGGTTTGG+AGG - chr2_3:20687750-20687769 None:intergenic 45.0%
TCCAAACCCAAGAGCTTGAT+AGG + chr2_3:20687749-20687768 Msa0283480:CDS 45.0%
ACCTATCAAGCTCTTGGGTT+TGG - chr2_3:20687753-20687772 None:intergenic 45.0%
TATATGGTTGTGGTTGCAGC+TGG + chr2_3:20687860-20687879 Msa0283480:intron 45.0%
ATATGGTTGTGGTTGCAGCT+GGG + chr2_3:20687861-20687880 Msa0283480:intron 45.0%
!! ACATTGACTCTGAGAGGAAG+AGG + chr2_3:20687962-20687981 Msa0283480:CDS 45.0%
ACTCTTTGCACTTAGAGCAG+TGG + chr2_3:20688005-20688024 Msa0283480:CDS 45.0%
AGTGGTCCCAAACATTAGCA+AGG + chr2_3:20688023-20688042 Msa0283480:CDS 45.0%
! AAGAGCTTCCTGTGTTGCTA+AGG + chr2_3:20688597-20688616 Msa0283480:CDS 45.0%
TTCTTGGACCTTAGCAACAC+AGG - chr2_3:20688608-20688627 None:intergenic 45.0%
!! GGCAATGGTAGGCCTTATTA+AGG - chr2_3:20689439-20689458 None:intergenic 45.0%
! TTCTCTATTAGGGTACCTGG+TGG - chr2_3:20689465-20689484 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr2_3:20689961-20689980 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr2_3:20689961-20689980 Msa0283480:intron 45.0%
GCAGCTTAGGGTTACATACA+TGG + chr2_3:20690000-20690019 Msa0283480:intron 45.0%
! GCCAACATCACCTCTTTTTC+AGG + chr2_3:20690124-20690143 Msa0283480:CDS 45.0%
GCCTGAAAAAGAGGTGATGT+TGG - chr2_3:20690128-20690147 None:intergenic 45.0%
!!! ACATCACCTCTTTTTCAGGC+AGG + chr2_3:20690128-20690147 Msa0283480:CDS 45.0%
CAAAAGCCTGCCTGAAAAAG+AGG - chr2_3:20690137-20690156 None:intergenic 45.0%
TGTCCCCTCTCATGAATACA+AGG - chr2_3:20690782-20690801 None:intergenic 45.0%
GATGTGAGAAAGAGTGGCTT+TGG - chr2_3:20691004-20691023 None:intergenic 45.0%
TCACATCACCCACACCAAAA+TGG + chr2_3:20691017-20691036 Msa0283480:intron 45.0%
TAAGTAATTGTGGCTGCTGC+AGG + chr2_3:20692971-20692990 Msa0283480:intron 45.0%
AGATGCTCATAGGGCTTAGA+GGG - chr2_3:20693466-20693485 None:intergenic 45.0%
TAGATGCTCATAGGGCTTAG+AGG - chr2_3:20693467-20693486 None:intergenic 45.0%
!! AGTATTGGGTTGAGGAACAG+TGG + chr2_3:20693533-20693552 Msa0283480:three_prime_UTR 45.0%
!! TAATTAATTATAATTAATCA+TGG + chr2_3:20687828-20687847 Msa0283480:intron 5.0%
!! CAAAAATTAAATTAAAAATA+GGG - chr2_3:20688929-20688948 None:intergenic 5.0%
!! ACAAAAATTAAATTAAAAAT+AGG - chr2_3:20688930-20688949 None:intergenic 5.0%
!!! ATGAATTTTTATATTTTTTA+CGG - chr2_3:20689058-20689077 None:intergenic 5.0%
!!! TATAATATTTTAAATTTTTC+TGG + chr2_3:20689129-20689148 Msa0283480:intron 5.0%
!!! AATATATATTTTTAATAAAG+AGG - chr2_3:20690244-20690263 None:intergenic 5.0%
!!! AATCAAAAAAAATATTTTAA+AGG + chr2_3:20691452-20691471 Msa0283480:intron 5.0%
!!! ATCAAAAAAAATATTTTAAA+GGG + chr2_3:20691453-20691472 Msa0283480:intron 5.0%
!!! GTTTTAAAAAAAATTATTTT+TGG + chr2_3:20692384-20692403 Msa0283480:intron 5.0%
!!! TTTTTTTTTTTTTTTATGAA+TGG - chr2_3:20692613-20692632 None:intergenic 5.0%
!!! TTTTATTTAACTAAAAAATA+TGG - chr2_3:20693018-20693037 None:intergenic 5.0%
!!! TATAATACTTTTTTTTTTTT+TGG - chr2_3:20693059-20693078 None:intergenic 5.0%
!!! TTTTTTTTTAATTCAAAATT+AGG + chr2_3:20693253-20693272 Msa0283480:intron 5.0%
!!! TTTTTTTTAATTCAAAATTA+GGG + chr2_3:20693254-20693273 Msa0283480:intron 5.0%
TATGGTTGTGGTTGCAGCTG+GGG + chr2_3:20687862-20687881 Msa0283480:intron 50.0%
TATGATTCAAGCTCCCCCGA+TGG + chr2_3:20687910-20687929 Msa0283480:CDS 50.0%
! TCCTGATGATGCTGCACCAT+CGG - chr2_3:20687929-20687948 None:intergenic 50.0%
! TTGACTCTGAGAGGAAGAGG+AGG + chr2_3:20687965-20687984 Msa0283480:CDS 50.0%
! TATTAGGGTACCTGGTGGTG+TGG - chr2_3:20689460-20689479 None:intergenic 50.0%
TAAACCACGCGGTAAGGTCT+TGG - chr2_3:20690871-20690890 None:intergenic 50.0%
!! GAAAGAGTGGCTTTGGTGGA+AGG - chr2_3:20690997-20691016 None:intergenic 50.0%
!! GTGAGAAAGAGTGGCTTTGG+TGG - chr2_3:20691001-20691020 None:intergenic 50.0%
GTGGGTGATGTGAGAAAGAG+TGG - chr2_3:20691010-20691029 None:intergenic 50.0%
AGGGTCATTGAGAGCTGCAA+CGG - chr2_3:20693447-20693466 None:intergenic 50.0%
TTGTGGTTGCAGCTGGGGAT+TGG + chr2_3:20687867-20687886 Msa0283480:intron 55.0%
! TGATGATGCTGCACCATCGG+GGG - chr2_3:20687926-20687945 None:intergenic 55.0%
! CTGATGATGCTGCACCATCG+GGG - chr2_3:20687927-20687946 None:intergenic 55.0%
! CCTGATGATGCTGCACCATC+GGG - chr2_3:20687928-20687947 None:intergenic 55.0%
ATGACCAAGACCTTACCGCG+TGG + chr2_3:20690864-20690883 Msa0283480:intron 55.0%
TGAGAGCTGCAACGGCTGTT+TGG - chr2_3:20693439-20693458 None:intergenic 55.0%
CCCGATGGTGCAGCATCATC+AGG + chr2_3:20687925-20687944 Msa0283480:CDS 60.0%
! CCTGGTGGTGTGGCAATGGT+AGG - chr2_3:20689450-20689469 None:intergenic 60.0%
CCTACCATTGCCACACCACC+AGG + chr2_3:20689447-20689466 Msa0283480:intron 60.0%
! GGTACCTGGTGGTGTGGCAA+TGG - chr2_3:20689454-20689473 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 20687577 20693754 20687577 ID=Msa0283480;Name=Msa0283480
chr2_3 mRNA 20687577 20693754 20687577 ID=Msa0283480-mRNA-1;Parent=Msa0283480;Name=Msa0283480-mRNA-1;_AED=0.10;_eAED=0.10;_QI=120|1|1|1|1|1|5|267|244
chr2_3 exon 20687577 20687770 20687577 ID=Msa0283480-mRNA-1:exon:8196;Parent=Msa0283480-mRNA-1
chr2_3 exon 20687879 20688044 20687879 ID=Msa0283480-mRNA-1:exon:8197;Parent=Msa0283480-mRNA-1
chr2_3 exon 20688458 20688691 20688458 ID=Msa0283480-mRNA-1:exon:8198;Parent=Msa0283480-mRNA-1
chr2_3 exon 20690004 20690174 20690004 ID=Msa0283480-mRNA-1:exon:8199;Parent=Msa0283480-mRNA-1
chr2_3 exon 20693398 20693754 20693398 ID=Msa0283480-mRNA-1:exon:8200;Parent=Msa0283480-mRNA-1
chr2_3 five_prime_UTR 20687577 20687696 20687577 ID=Msa0283480-mRNA-1:five_prime_utr;Parent=Msa0283480-mRNA-1
chr2_3 CDS 20687697 20687770 20687697 ID=Msa0283480-mRNA-1:cds;Parent=Msa0283480-mRNA-1
chr2_3 CDS 20687879 20688044 20687879 ID=Msa0283480-mRNA-1:cds;Parent=Msa0283480-mRNA-1
chr2_3 CDS 20688458 20688691 20688458 ID=Msa0283480-mRNA-1:cds;Parent=Msa0283480-mRNA-1
chr2_3 CDS 20690004 20690174 20690004 ID=Msa0283480-mRNA-1:cds;Parent=Msa0283480-mRNA-1
chr2_3 CDS 20693398 20693487 20693398 ID=Msa0283480-mRNA-1:cds;Parent=Msa0283480-mRNA-1
chr2_3 three_prime_UTR 20693488 20693754 20693488 ID=Msa0283480-mRNA-1:three_prime_utr;Parent=Msa0283480-mRNA-1
Gene Sequence

>Msa0283480

ATGGAGAACATTGGTGATGAGTACAAGCTTTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAGCTTGATAGCTGGGGATTGGATGAAGCTTTTTCAGGATATTATGATTCAAGCTCCCCCGATGGTGCAGCATCATCAGGAGTTTCATCTAAGAACATTGACTCTGAGAGGAAGAGGAGGAAGAAGCTTAATGAAAGACTCTTTGCACTTAGAGCAGTGGTCCCAAACATTAGCAAGATGGATAAAGCTTCAATTATTAAGGATGCTATTGAGTACATAAAGCACTTGCATGAACAAGAGAAGATTATTCAAGCTGAGATAATGGAACTTGAATCTGGGATGCCTAATAATATTAATCCAAATTATGATTTTGATCAAGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAGATCAGTTATATGATTCTGTCACTTCAAGAAACTTTCCATTTGAAGTTCTTGAGCTTAGGGTTACATACATGGGAGAGAATACAATGGTAGTGAGCTTGACATGTAACAAAAGGGCAGACACAATGGTGAAATTGTGTGAAGTTTTCGAATCTTTGAAGCTTAAAATTATTACTGCCAACATCACCTCTTTTTCAGGCAGGCTTTTGAAGACAGTCATCATTGAGGCAAATGAGGAAGATAAAGATCTATTGCAAATAAAGATCCAAACAGCCGTTGCAGCTCTCAATGACCCTCTAAGCCCTATGAGCATCTAA

Protein sequence

>Msa0283480

MENIGDEYKLYWETNMFLQTQELDSWGLDEAFSGYYDSSSPDGAASSGVSSKNIDSERKRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIKHLHEQEKIIQAEIMELESGMPNNINPNYDFDQELPVLLRSKKKRTDQLYDSVTSRNFPFEVLELRVTYMGENTMVVSLTCNKRADTMVKLCEVFESLKLKIITANITSFSGRLLKTVIIEANEEDKDLLQIKIQTAVAALNDPLSPMSI*